Running as unit: rb-build-amd64_4-43621.service ==================================================================================== Wed Jan 22 08:55:28 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_amd64_4) on jenkins, called using "ionos15-amd64 ionos1-amd64" as arguments. Wed Jan 22 08:55:28 UTC 2025 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-SiXQ9KWk" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Wed Jan 22 08:55:28 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos15-amd64.debian.net is marked as down. Wed Jan 22 08:55:28 UTC 2025 - checking via ssh if ionos15-amd64.debian.net is up. removed '/tmp/read-only-fs-test-7KoADO' Wed Jan 22 08:55:28 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos1-amd64.debian.net is marked as down. Wed Jan 22 08:55:28 UTC 2025 - checking via ssh if ionos1-amd64.debian.net is up. removed '/tmp/read-only-fs-test-qBeYO2' ok, let's check if pyranges is building anywhere yet… ok, pyranges is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of pyranges in trixie on amd64 on jenkins now. 1st build will be done on ionos15-amd64.debian.net. 2nd build will be done on ionos1-amd64.debian.net. ============================================================================= Wed Jan 22 08:55:34 UTC 2025 I: starting to build pyranges/trixie/amd64 on jenkins on '2025-01-22 08:55' Wed Jan 22 08:55:34 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_4/43621/console.log 1737536134 amd64 trixie pyranges Wed Jan 22 08:55:34 UTC 2025 I: Downloading source for trixie/pyranges=0.0.111+ds-8 --2025-01-22 08:55:34-- http://deb.debian.org/debian/pool/main/p/pyranges/pyranges_0.0.111%2bds-8.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2428 (2.4K) [text/prs.lines.tag] Saving to: ‘pyranges_0.0.111+ds-8.dsc’ 0K .. 100% 396M=0s 2025-01-22 08:55:34 (396 MB/s) - ‘pyranges_0.0.111+ds-8.dsc’ saved [2428/2428] --2025-01-22 08:55:34-- http://deb.debian.org/debian/pool/main/p/pyranges/pyranges_0.0.111%2bds-8.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2428 (2.4K) [text/prs.lines.tag] Saving to: ‘pyranges_0.0.111+ds-8.dsc’ 0K .. 100% 396M=0s 2025-01-22 08:55:34 (396 MB/s) - ‘pyranges_0.0.111+ds-8.dsc’ saved [2428/2428] Wed Jan 22 08:55:34 UTC 2025 I: pyranges_0.0.111+ds-8.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: pyranges Binary: python3-pyranges Architecture: all Version: 0.0.111+ds-8 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller , Étienne Mollier Homepage: https://github.com/biocore-ntnu/pyranges Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/pyranges Vcs-Git: https://salsa.debian.org/med-team/pyranges.git Testsuite: autopkgtest-pkg-python Build-Depends: debhelper-compat (= 13), dh-sequence-python3, python3-setuptools, python3-all, python3-ncls , python3-pyrle , python3-pytest , python3-pytest-xdist , python3-sorted-nearest, python3-hypothesis, bedtools, samtools Package-List: python3-pyranges deb python optional arch=all Checksums-Sha1: 3591cd303505955df6c34eec755d51f27bd38e5b 3288424 pyranges_0.0.111+ds.orig.tar.xz 11c16ff4e96765e90b03b8970baf6a2a67a79508 83524 pyranges_0.0.111+ds-8.debian.tar.xz Checksums-Sha256: b22a50cb9e0109c8c14720385a5e87bef029f491d4f3e02dbe492866802144d1 3288424 pyranges_0.0.111+ds.orig.tar.xz 32f2fd274b0a1491c14271918ced0d65f4f54803de208b204d1b7e3d72c1e2da 83524 pyranges_0.0.111+ds-8.debian.tar.xz Files: 2c48870491f89e171b4aeeaa5b3b216a 3288424 pyranges_0.0.111+ds.orig.tar.xz af00bef0cfbf5e3b80414fb319855373 83524 pyranges_0.0.111+ds-8.debian.tar.xz Dgit: 695bcedb7bdf86c3affa56de602d2bfb26c335dd debian archive/debian/0.0.111+ds-8 https://git.dgit.debian.org/pyranges -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmbus6QUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdq8Ow//Wvl+goyl2sk6S9YQ4rupm9O9dr5x gH4amgn/SZvJJyeS/FDigQO8Gk7H4eOAVqUDixAW345RzTg8A24FUp1RfYl0jGK7 yYxvyOqbwspMqMPRfshEYTdE4e8EeRgcT8hBgxx1S4XJKHKmIccalG/car77mqA9 1wGYoJu+3/33hDJr03Pj4YvINMldqYrEpImE5xXajpNY7tyAEqkJ5s2BQzN5X9MH oipETIoa2BqMMcSSIVzHaxM4KskGuDAT0t7VG/J2lZtTAkszZUrCeKKfaEgKCWrm UxfxkGQTuua9v1VjsHsam1U2VOXYYDdpFo99GMyv9jw4Xzir6KxGHJhfyYjM4q/L 2Kg6Z4iQh2uL/w34ai+cuxkFvt8yRLMhWfWUcL9VC8HrLRurEH55eKUafQ/WrGth kKdKfLNKSoYsXos/b1jjv9jR7M57eKblXzHjYgTaZH5NQWxONJRmj5NQf47UvEYr TDhP193+vbWKz5WteTXgY3MhIf5qQNNfNJIP+LhG1jCb3N/Ktk0PlkRFcbFuLLdq +uusJ+9iW4w3FdsMxK52AIw78aAChS57N9xX1bBTp79oL4NfF7jUPF6swV4qax+j HlfsPHexQAGSEHGb8kym9PgywQ1Ak30ZrBjqjxjU8JDCgH7LFVBZs1OXQMj2lcsi h67qJRAM6vTfQJg= =i+Dk -----END PGP SIGNATURE----- Wed Jan 22 08:55:34 UTC 2025 I: Checking whether the package is not for us Wed Jan 22 08:55:34 UTC 2025 I: Starting 1st build on remote node ionos15-amd64.debian.net. Wed Jan 22 08:55:34 UTC 2025 I: Preparing to do remote build '1' on ionos15-amd64.debian.net. Wed Jan 22 08:55:34 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos15-amd64.debian.net is marked as down. Wed Jan 22 08:55:34 UTC 2025 - checking via ssh if ionos15-amd64.debian.net is up. removed '/tmp/read-only-fs-test-s0GAXd' ==================================================================================== Tue Feb 24 15:18:35 UTC 2026 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos15-amd64, called using "1 pyranges trixie /srv/reproducible-results/rbuild-debian/r-b-build.1OvWq7Kz 0.0.111+ds-8" as arguments. Tue Feb 24 15:18:35 UTC 2026 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-1jPUVqQf" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Tue Feb 24 15:18:35 UTC 2026 I: Downloading source for trixie/pyranges=0.0.111+ds-8 Reading package lists... NOTICE: 'pyranges' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/pyranges.git Please use: git clone https://salsa.debian.org/med-team/pyranges.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 3374 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main pyranges 0.0.111+ds-8 (dsc) [2428 B] Get:2 http://deb.debian.org/debian trixie/main pyranges 0.0.111+ds-8 (tar) [3288 kB] Get:3 http://deb.debian.org/debian trixie/main pyranges 0.0.111+ds-8 (diff) [83.5 kB] Fetched 3374 kB in 0s (18.3 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'pyranges' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/pyranges.git Please use: git clone https://salsa.debian.org/med-team/pyranges.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 3374 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main pyranges 0.0.111+ds-8 (dsc) [2428 B] Get:2 http://deb.debian.org/debian trixie/main pyranges 0.0.111+ds-8 (tar) [3288 kB] Get:3 http://deb.debian.org/debian trixie/main pyranges 0.0.111+ds-8 (diff) [83.5 kB] Fetched 3374 kB in 0s (18.3 MB/s) Download complete and in download only mode ============================================================================= Building pyranges in trixie on amd64 on ionos15-amd64 now. Date: Tue Feb 24 15:18:35 UTC 2026 Date UTC: Tue Feb 24 15:18:35 UTC 2026 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Tue Feb 24 03:18:35 -12 2026 I: pbuilder-time-stamp: 1771946315 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [pyranges_0.0.111+ds-8.dsc] I: copying [./pyranges_0.0.111+ds.orig.tar.xz] I: copying [./pyranges_0.0.111+ds-8.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./pyranges_0.0.111+ds-8.dsc: unsupported subcommand dpkg-source: info: extracting pyranges in pyranges-0.0.111+ds dpkg-source: info: unpacking pyranges_0.0.111+ds.orig.tar.xz dpkg-source: info: unpacking pyranges_0.0.111+ds-8.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix_dtype.patch dpkg-source: info: applying reorder.patch dpkg-source: info: applying numpy_1.24.patch dpkg-source: info: applying healthcheck-all.patch dpkg-source: info: applying no_install_depends_cython.patch dpkg-source: info: applying pandas2.0.patch dpkg-source: info: applying fix-test_unary.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2206354/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='2f33c3f81d794337928d93118d947e04' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2206354' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.1OvWq7Kz/pbuilderrc_p6EI --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.1OvWq7Kz/b1 --logfile b1/build.log pyranges_0.0.111+ds-8.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos15-amd64 6.11.10+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.11.10-1~bpo12+1 (2024-12-19) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2206354/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, python3-setuptools, python3-all, python3-ncls, python3-pyrle, python3-pytest, python3-pytest-xdist, python3-sorted-nearest, python3-hypothesis, bedtools, samtools dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19856 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-ncls; however: Package python3-ncls is not installed. pbuilder-satisfydepends-dummy depends on python3-pyrle; however: Package python3-pyrle is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest-xdist; however: Package python3-pytest-xdist is not installed. pbuilder-satisfydepends-dummy depends on python3-sorted-nearest; however: Package python3-sorted-nearest is not installed. pbuilder-satisfydepends-dummy depends on python3-hypothesis; however: Package python3-hypothesis is not installed. pbuilder-satisfydepends-dummy depends on bedtools; however: Package bedtools is not installed. pbuilder-satisfydepends-dummy depends on samtools; however: Package samtools is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bedtools{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libcom-err2{a} libcurl3t64-gnutls{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libgnutls30t64{a} libgssapi-krb5-2{a} libhts3t64{a} libhtscodecs2{a} libicu72{a} libidn2-0{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} libldap2{a} libmagic-mgc{a} libmagic1t64{a} libncurses6{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libnsl2{a} libp11-kit0{a} libpipeline1{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libtasn1-6{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-all{a} python3-attr{a} python3-autocommand{a} python3-dateutil{a} python3-execnet{a} python3-hypothesis{a} python3-inflect{a} python3-iniconfig{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-natsort{a} python3-ncls{a} python3-numpy{a} python3-packaging{a} python3-pandas{a} python3-pandas-lib{a} python3-pkg-resources{a} python3-pluggy{a} python3-pyrle{a} python3-pytest{a} python3-pytest-xdist{a} python3-setuptools{a} python3-sorted-nearest{a} python3-sortedcontainers{a} python3-tabulate{a} python3-typeguard{a} python3-typing-extensions{a} python3-tz{a} python3-zipp{a} python3.12{a} python3.12-minimal{a} python3.13{a} python3.13-minimal{a} readline-common{a} samtools{a} sensible-utils{a} tzdata{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libgpm2 libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx publicsuffix python3-bottleneck python3-bs4 python3-click python3-html5lib python3-jinja2 python3-lxml python3-matplotlib python3-numexpr python3-odf python3-openpyxl python3-pygments python3-scipy python3-tables wget 0 packages upgraded, 114 newly installed, 0 to remove and 0 not upgraded. Need to get 61.3 MB of archives. After unpacking 292 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 libpython3.12-minimal amd64 3.12.8-5 [817 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.6.4-1 [106 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 python3.12-minimal amd64 3.12.8-5 [2164 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 python3-minimal amd64 3.12.8-1 [26.9 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 tzdata all 2024b-6 [257 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 libffi8 amd64 3.4.6-1 [23.6 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 libkrb5support0 amd64 1.21.3-3 [32.5 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 libcom-err2 amd64 1.47.2-1 [24.0 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 libk5crypto3 amd64 1.21.3-3 [79.9 kB] Get: 12 http://deb.debian.org/debian trixie/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get: 13 http://deb.debian.org/debian trixie/main amd64 libkrb5-3 amd64 1.21.3-3 [324 kB] Get: 14 http://deb.debian.org/debian trixie/main amd64 libgssapi-krb5-2 amd64 1.21.3-3 [136 kB] Get: 15 http://deb.debian.org/debian trixie/main amd64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.3+b1 [83.1 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 libnsl2 amd64 1.3.0-3+b3 [40.6 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 readline-common all 8.2-6 [69.4 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 libreadline8t64 amd64 8.2-6 [169 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 libpython3.12-stdlib amd64 3.12.8-5 [1971 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 python3.12 amd64 3.12.8-5 [677 kB] Get: 22 http://deb.debian.org/debian trixie/main amd64 libpython3-stdlib amd64 3.12.8-1 [9788 B] Get: 23 http://deb.debian.org/debian trixie/main amd64 python3 amd64 3.12.8-1 [27.9 kB] Get: 24 http://deb.debian.org/debian trixie/main amd64 libpython3.13-minimal amd64 3.13.1-3 [858 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 python3.13-minimal amd64 3.13.1-3 [2202 kB] Get: 26 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 27 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get: 28 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get: 30 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.22.5-4 [200 kB] Get: 31 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 32 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-7 [1185 kB] Get: 33 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.40.4-1 [92.2 kB] Get: 34 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 35 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 36 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-5 [294 kB] Get: 37 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.72-3 [493 kB] Get: 38 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 39 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 40 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.22.5-4 [723 kB] Get: 41 http://deb.debian.org/debian trixie/main amd64 bedtools amd64 2.31.1+dfsg-2 [678 kB] Get: 42 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.23 [90.6 kB] Get: 43 http://deb.debian.org/debian trixie/main amd64 libtool all 2.5.4-2 [539 kB] Get: 44 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 45 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 46 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 47 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 48 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 49 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 50 http://deb.debian.org/debian trixie/main amd64 libunistring5 amd64 1.3-1 [476 kB] Get: 51 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-6 [9421 kB] Get: 52 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB] Get: 53 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.22.5-4 [1600 kB] Get: 54 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 55 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 56 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.23 [919 kB] Get: 57 http://deb.debian.org/debian trixie/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 58 http://deb.debian.org/debian trixie/main amd64 python3-more-itertools all 10.6.0-1 [65.3 kB] Get: 59 http://deb.debian.org/debian trixie/main amd64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 60 http://deb.debian.org/debian trixie/main amd64 python3-typeguard all 4.4.1-1 [37.0 kB] Get: 61 http://deb.debian.org/debian trixie/main amd64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 62 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 63 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 64 http://deb.debian.org/debian trixie/main amd64 python3-pkg-resources all 75.6.0-1 [222 kB] Get: 65 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 66 http://deb.debian.org/debian trixie/main amd64 python3-zipp all 3.21.0-1 [10.6 kB] Get: 67 http://deb.debian.org/debian trixie/main amd64 python3-setuptools all 75.6.0-1 [720 kB] Get: 68 http://deb.debian.org/debian trixie/main amd64 dh-python all 6.20250108 [113 kB] Get: 69 http://deb.debian.org/debian trixie/main amd64 libblas3 amd64 3.12.0-4 [152 kB] Get: 70 http://deb.debian.org/debian trixie/main amd64 libbrotli1 amd64 1.1.0-2+b6 [302 kB] Get: 71 http://deb.debian.org/debian trixie/main amd64 libidn2-0 amd64 2.3.7-2+b1 [129 kB] Get: 72 http://deb.debian.org/debian trixie/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB] Get: 73 http://deb.debian.org/debian trixie/main amd64 libtasn1-6 amd64 4.19.0-3+b3 [49.5 kB] Get: 74 http://deb.debian.org/debian trixie/main amd64 libgnutls30t64 amd64 3.8.8-2 [1454 kB] Get: 75 http://deb.debian.org/debian trixie/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-8+b1 [19.9 kB] Get: 76 http://deb.debian.org/debian trixie/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-8+b1 [57.6 kB] Get: 77 http://deb.debian.org/debian trixie/main amd64 libldap2 amd64 2.6.9+dfsg-1 [192 kB] Get: 78 http://deb.debian.org/debian trixie/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB] Get: 79 http://deb.debian.org/debian trixie/main amd64 libnghttp3-9 amd64 1.6.0-2 [64.8 kB] Get: 80 http://deb.debian.org/debian trixie/main amd64 libngtcp2-16 amd64 1.9.1-1 [119 kB] Get: 81 http://deb.debian.org/debian trixie/main amd64 libngtcp2-crypto-gnutls8 amd64 1.9.1-1 [18.5 kB] Get: 82 http://deb.debian.org/debian trixie/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 83 http://deb.debian.org/debian trixie/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get: 84 http://deb.debian.org/debian trixie/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 85 http://deb.debian.org/debian trixie/main amd64 libcurl3t64-gnutls amd64 8.11.1-1+b1 [360 kB] Get: 86 http://deb.debian.org/debian trixie/main amd64 libdeflate0 amd64 1.23-1+b1 [47.5 kB] Get: 87 http://deb.debian.org/debian trixie/main amd64 libgfortran5 amd64 14.2.0-12 [836 kB] Get: 88 http://deb.debian.org/debian trixie/main amd64 libhtscodecs2 amd64 1.6.1-1 [95.6 kB] Get: 89 http://deb.debian.org/debian trixie/main amd64 libhts3t64 amd64 1.20+ds-2 [455 kB] Get: 90 http://deb.debian.org/debian trixie/main amd64 liblapack3 amd64 3.12.0-4 [2450 kB] Get: 91 http://deb.debian.org/debian trixie/main amd64 libncurses6 amd64 6.5-2+b1 [105 kB] Get: 92 http://deb.debian.org/debian trixie/main amd64 libpython3.13-stdlib amd64 3.13.1-3 [1973 kB] Get: 93 http://deb.debian.org/debian trixie/main amd64 python3.13 amd64 3.13.1-3 [740 kB] Get: 94 http://deb.debian.org/debian trixie/main amd64 python3-all amd64 3.12.8-1 [1048 B] Get: 95 http://deb.debian.org/debian trixie/main amd64 python3-attr all 24.3.0-1 [68.8 kB] Get: 96 http://deb.debian.org/debian trixie/main amd64 python3-dateutil all 2.9.0-3 [79.3 kB] Get: 97 http://deb.debian.org/debian trixie/main amd64 python3-execnet all 2.1.1-1 [40.2 kB] Get: 98 http://deb.debian.org/debian trixie/main amd64 python3-sortedcontainers all 2.4.0-2 [31.9 kB] Get: 99 http://deb.debian.org/debian trixie/main amd64 python3-hypothesis all 6.122.1-1 [326 kB] Get: 100 http://deb.debian.org/debian trixie/main amd64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 101 http://deb.debian.org/debian trixie/main amd64 python3-natsort all 8.0.2-2 [39.0 kB] Get: 102 http://deb.debian.org/debian trixie/main amd64 python3-numpy amd64 1:1.26.4+ds-12 [4738 kB] Get: 103 http://deb.debian.org/debian trixie/main amd64 python3-ncls amd64 0.0.63-hotfix+ds-1+b6 [479 kB] Get: 104 http://deb.debian.org/debian trixie/main amd64 python3-packaging all 24.2-1 [55.3 kB] Get: 105 http://deb.debian.org/debian trixie/main amd64 python3-tz all 2024.2-1 [31.0 kB] Get: 106 http://deb.debian.org/debian trixie/main amd64 python3-pandas-lib amd64 2.2.3+dfsg-5+b1 [7307 kB] Get: 107 http://deb.debian.org/debian trixie/main amd64 python3-pandas all 2.2.3+dfsg-5 [3096 kB] Get: 108 http://deb.debian.org/debian trixie/main amd64 python3-pluggy all 1.5.0-1 [26.9 kB] Get: 109 http://deb.debian.org/debian trixie/main amd64 python3-tabulate all 0.9.0-1 [45.9 kB] Get: 110 http://deb.debian.org/debian trixie/main amd64 python3-pyrle amd64 0.0.33-4.1+b2 [372 kB] Get: 111 http://deb.debian.org/debian trixie/main amd64 python3-pytest all 8.3.4-1 [250 kB] Get: 112 http://deb.debian.org/debian trixie/main amd64 python3-pytest-xdist all 3.6.1-1 [44.4 kB] Get: 113 http://deb.debian.org/debian trixie/main amd64 python3-sorted-nearest amd64 0.0.39+dfsg-3 [603 kB] Get: 114 http://deb.debian.org/debian trixie/main amd64 samtools amd64 1.20-3 [653 kB] Fetched 61.3 MB in 2s (40.1 MB/s) Preconfiguring packages ... Selecting previously unselected package libpython3.12-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19856 files and directories currently installed.) Preparing to unpack .../libpython3.12-minimal_3.12.8-5_amd64.deb ... Unpacking libpython3.12-minimal:amd64 (3.12.8-5) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.6.4-1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.4-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../python3.12-minimal_3.12.8-5_amd64.deb ... Unpacking python3.12-minimal (3.12.8-5) ... Setting up libpython3.12-minimal:amd64 (3.12.8-5) ... Setting up libexpat1:amd64 (2.6.4-1) ... Setting up python3.12-minimal (3.12.8-5) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20176 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.12.8-1_amd64.deb ... Unpacking python3-minimal (3.12.8-1) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../03-tzdata_2024b-6_all.deb ... Unpacking tzdata (2024b-6) ... Selecting previously unselected package libffi8:amd64. Preparing to unpack .../04-libffi8_3.4.6-1_amd64.deb ... Unpacking libffi8:amd64 (3.4.6-1) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../05-libkrb5support0_1.21.3-3_amd64.deb ... Unpacking libkrb5support0:amd64 (1.21.3-3) ... Selecting previously unselected package libcom-err2:amd64. Preparing to unpack .../06-libcom-err2_1.47.2-1_amd64.deb ... Unpacking libcom-err2:amd64 (1.47.2-1) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../07-libk5crypto3_1.21.3-3_amd64.deb ... Unpacking libk5crypto3:amd64 (1.21.3-3) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../08-libkeyutils1_1.6.3-4_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.3-4) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../09-libkrb5-3_1.21.3-3_amd64.deb ... Unpacking libkrb5-3:amd64 (1.21.3-3) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../10-libgssapi-krb5-2_1.21.3-3_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.21.3-3) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../11-libtirpc-common_1.3.4+ds-1.3_all.deb ... Unpacking libtirpc-common (1.3.4+ds-1.3) ... Selecting previously unselected package libtirpc3t64:amd64. Preparing to unpack .../12-libtirpc3t64_1.3.4+ds-1.3+b1_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ... Selecting previously unselected package libnsl2:amd64. Preparing to unpack .../13-libnsl2_1.3.0-3+b3_amd64.deb ... Unpacking libnsl2:amd64 (1.3.0-3+b3) ... Selecting previously unselected package readline-common. Preparing to unpack .../14-readline-common_8.2-6_all.deb ... Unpacking readline-common (8.2-6) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../15-libreadline8t64_8.2-6_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-6) ... Selecting previously unselected package libpython3.12-stdlib:amd64. Preparing to unpack .../16-libpython3.12-stdlib_3.12.8-5_amd64.deb ... Unpacking libpython3.12-stdlib:amd64 (3.12.8-5) ... Selecting previously unselected package python3.12. Preparing to unpack .../17-python3.12_3.12.8-5_amd64.deb ... Unpacking python3.12 (3.12.8-5) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../18-libpython3-stdlib_3.12.8-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.12.8-1) ... Setting up python3-minimal (3.12.8-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21244 files and directories currently installed.) Preparing to unpack .../00-python3_3.12.8-1_amd64.deb ... Unpacking python3 (3.12.8-1) ... Selecting previously unselected package libpython3.13-minimal:amd64. Preparing to unpack .../01-libpython3.13-minimal_3.13.1-3_amd64.deb ... Unpacking libpython3.13-minimal:amd64 (3.13.1-3) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../02-python3.13-minimal_3.13.1-3_amd64.deb ... Unpacking python3.13-minimal (3.13.1-3) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../03-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../04-libmagic-mgc_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../05-libmagic1t64_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../06-file_1%3a5.45-3+b1_amd64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../07-gettext-base_0.22.5-4_amd64.deb ... Unpacking gettext-base (0.22.5-4) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../08-libuchardet0_0.0.8-1+b2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../09-groff-base_1.23.0-7_amd64.deb ... Unpacking groff-base (1.23.0-7) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../10-bsdextrautils_2.40.4-1_amd64.deb ... Unpacking bsdextrautils (2.40.4-1) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../11-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../12-man-db_2.13.0-1_amd64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../13-m4_1.4.19-5_amd64.deb ... Unpacking m4 (1.4.19-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../14-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../15-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../16-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../17-autopoint_0.22.5-4_all.deb ... Unpacking autopoint (0.22.5-4) ... Selecting previously unselected package bedtools. Preparing to unpack .../18-bedtools_2.31.1+dfsg-2_amd64.deb ... Unpacking bedtools (2.31.1+dfsg-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../19-libdebhelper-perl_13.23_all.deb ... Unpacking libdebhelper-perl (13.23) ... Selecting previously unselected package libtool. Preparing to unpack .../20-libtool_2.5.4-2_all.deb ... Unpacking libtool (2.5.4-2) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../21-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../22-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../23-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../24-dh-strip-nondeterminism_1.14.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.0-1) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../25-libelf1t64_0.192-4_amd64.deb ... Unpacking libelf1t64:amd64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../26-dwz_0.15-1+b1_amd64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libunistring5:amd64. Preparing to unpack .../27-libunistring5_1.3-1_amd64.deb ... Unpacking libunistring5:amd64 (1.3-1) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../28-libicu72_72.1-6_amd64.deb ... Unpacking libicu72:amd64 (72.1-6) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../29-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_amd64.deb ... Unpacking libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../30-gettext_0.22.5-4_amd64.deb ... Unpacking gettext (0.22.5-4) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../31-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../32-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../33-debhelper_13.23_all.deb ... Unpacking debhelper (13.23) ... Selecting previously unselected package python3-autocommand. Preparing to unpack .../34-python3-autocommand_2.2.2-3_all.deb ... Unpacking python3-autocommand (2.2.2-3) ... Selecting previously unselected package python3-more-itertools. Preparing to unpack .../35-python3-more-itertools_10.6.0-1_all.deb ... Unpacking python3-more-itertools (10.6.0-1) ... Selecting previously unselected package python3-typing-extensions. Preparing to unpack .../36-python3-typing-extensions_4.12.2-2_all.deb ... Unpacking python3-typing-extensions (4.12.2-2) ... Selecting previously unselected package python3-typeguard. Preparing to unpack .../37-python3-typeguard_4.4.1-1_all.deb ... Unpacking python3-typeguard (4.4.1-1) ... Selecting previously unselected package python3-inflect. Preparing to unpack .../38-python3-inflect_7.3.1-2_all.deb ... Unpacking python3-inflect (7.3.1-2) ... Selecting previously unselected package python3-jaraco.context. Preparing to unpack .../39-python3-jaraco.context_6.0.0-1_all.deb ... Unpacking python3-jaraco.context (6.0.0-1) ... Selecting previously unselected package python3-jaraco.functools. Preparing to unpack .../40-python3-jaraco.functools_4.1.0-1_all.deb ... Unpacking python3-jaraco.functools (4.1.0-1) ... Selecting previously unselected package python3-pkg-resources. Preparing to unpack .../41-python3-pkg-resources_75.6.0-1_all.deb ... Unpacking python3-pkg-resources (75.6.0-1) ... Selecting previously unselected package python3-jaraco.text. Preparing to unpack .../42-python3-jaraco.text_4.0.0-1_all.deb ... Unpacking python3-jaraco.text (4.0.0-1) ... Selecting previously unselected package python3-zipp. Preparing to unpack .../43-python3-zipp_3.21.0-1_all.deb ... Unpacking python3-zipp (3.21.0-1) ... Selecting previously unselected package python3-setuptools. Preparing to unpack .../44-python3-setuptools_75.6.0-1_all.deb ... Unpacking python3-setuptools (75.6.0-1) ... Selecting previously unselected package dh-python. Preparing to unpack .../45-dh-python_6.20250108_all.deb ... Unpacking dh-python (6.20250108) ... Selecting previously unselected package libblas3:amd64. Preparing to unpack .../46-libblas3_3.12.0-4_amd64.deb ... Unpacking libblas3:amd64 (3.12.0-4) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../47-libbrotli1_1.1.0-2+b6_amd64.deb ... Unpacking libbrotli1:amd64 (1.1.0-2+b6) ... Selecting previously unselected package libidn2-0:amd64. Preparing to unpack .../48-libidn2-0_2.3.7-2+b1_amd64.deb ... Unpacking libidn2-0:amd64 (2.3.7-2+b1) ... Selecting previously unselected package libp11-kit0:amd64. Preparing to unpack .../49-libp11-kit0_0.25.5-3_amd64.deb ... Unpacking libp11-kit0:amd64 (0.25.5-3) ... Selecting previously unselected package libtasn1-6:amd64. Preparing to unpack .../50-libtasn1-6_4.19.0-3+b3_amd64.deb ... Unpacking libtasn1-6:amd64 (4.19.0-3+b3) ... Selecting previously unselected package libgnutls30t64:amd64. Preparing to unpack .../51-libgnutls30t64_3.8.8-2_amd64.deb ... Unpacking libgnutls30t64:amd64 (3.8.8-2) ... Selecting previously unselected package libsasl2-modules-db:amd64. Preparing to unpack .../52-libsasl2-modules-db_2.1.28+dfsg1-8+b1_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.28+dfsg1-8+b1) ... Selecting previously unselected package libsasl2-2:amd64. Preparing to unpack .../53-libsasl2-2_2.1.28+dfsg1-8+b1_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.28+dfsg1-8+b1) ... Selecting previously unselected package libldap2:amd64. Preparing to unpack .../54-libldap2_2.6.9+dfsg-1_amd64.deb ... Unpacking libldap2:amd64 (2.6.9+dfsg-1) ... Selecting previously unselected package libnghttp2-14:amd64. Preparing to unpack .../55-libnghttp2-14_1.64.0-1_amd64.deb ... Unpacking libnghttp2-14:amd64 (1.64.0-1) ... Selecting previously unselected package libnghttp3-9:amd64. Preparing to unpack .../56-libnghttp3-9_1.6.0-2_amd64.deb ... Unpacking libnghttp3-9:amd64 (1.6.0-2) ... Selecting previously unselected package libngtcp2-16:amd64. Preparing to unpack .../57-libngtcp2-16_1.9.1-1_amd64.deb ... Unpacking libngtcp2-16:amd64 (1.9.1-1) ... Selecting previously unselected package libngtcp2-crypto-gnutls8:amd64. Preparing to unpack .../58-libngtcp2-crypto-gnutls8_1.9.1-1_amd64.deb ... Unpacking libngtcp2-crypto-gnutls8:amd64 (1.9.1-1) ... Selecting previously unselected package libpsl5t64:amd64. Preparing to unpack .../59-libpsl5t64_0.21.2-1.1+b1_amd64.deb ... Unpacking libpsl5t64:amd64 (0.21.2-1.1+b1) ... Selecting previously unselected package librtmp1:amd64. Preparing to unpack .../60-librtmp1_2.4+20151223.gitfa8646d.1-2+b5_amd64.deb ... Unpacking librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Selecting previously unselected package libssh2-1t64:amd64. Preparing to unpack .../61-libssh2-1t64_1.11.1-1_amd64.deb ... Unpacking libssh2-1t64:amd64 (1.11.1-1) ... Selecting previously unselected package libcurl3t64-gnutls:amd64. Preparing to unpack .../62-libcurl3t64-gnutls_8.11.1-1+b1_amd64.deb ... Unpacking libcurl3t64-gnutls:amd64 (8.11.1-1+b1) ... Selecting previously unselected package libdeflate0:amd64. Preparing to unpack .../63-libdeflate0_1.23-1+b1_amd64.deb ... Unpacking libdeflate0:amd64 (1.23-1+b1) ... Selecting previously unselected package libgfortran5:amd64. Preparing to unpack .../64-libgfortran5_14.2.0-12_amd64.deb ... Unpacking libgfortran5:amd64 (14.2.0-12) ... Selecting previously unselected package libhtscodecs2:amd64. Preparing to unpack .../65-libhtscodecs2_1.6.1-1_amd64.deb ... Unpacking libhtscodecs2:amd64 (1.6.1-1) ... Selecting previously unselected package libhts3t64:amd64. Preparing to unpack .../66-libhts3t64_1.20+ds-2_amd64.deb ... Unpacking libhts3t64:amd64 (1.20+ds-2) ... Selecting previously unselected package liblapack3:amd64. Preparing to unpack .../67-liblapack3_3.12.0-4_amd64.deb ... Unpacking liblapack3:amd64 (3.12.0-4) ... Selecting previously unselected package libncurses6:amd64. Preparing to unpack .../68-libncurses6_6.5-2+b1_amd64.deb ... Unpacking libncurses6:amd64 (6.5-2+b1) ... Selecting previously unselected package libpython3.13-stdlib:amd64. Preparing to unpack .../69-libpython3.13-stdlib_3.13.1-3_amd64.deb ... Unpacking libpython3.13-stdlib:amd64 (3.13.1-3) ... Selecting previously unselected package python3.13. Preparing to unpack .../70-python3.13_3.13.1-3_amd64.deb ... Unpacking python3.13 (3.13.1-3) ... Selecting previously unselected package python3-all. Preparing to unpack .../71-python3-all_3.12.8-1_amd64.deb ... Unpacking python3-all (3.12.8-1) ... Selecting previously unselected package python3-attr. Preparing to unpack .../72-python3-attr_24.3.0-1_all.deb ... Unpacking python3-attr (24.3.0-1) ... Selecting previously unselected package python3-dateutil. Preparing to unpack .../73-python3-dateutil_2.9.0-3_all.deb ... Unpacking python3-dateutil (2.9.0-3) ... Selecting previously unselected package python3-execnet. Preparing to unpack .../74-python3-execnet_2.1.1-1_all.deb ... Unpacking python3-execnet (2.1.1-1) ... Selecting previously unselected package python3-sortedcontainers. Preparing to unpack .../75-python3-sortedcontainers_2.4.0-2_all.deb ... Unpacking python3-sortedcontainers (2.4.0-2) ... Selecting previously unselected package python3-hypothesis. Preparing to unpack .../76-python3-hypothesis_6.122.1-1_all.deb ... Unpacking python3-hypothesis (6.122.1-1) ... Selecting previously unselected package python3-iniconfig. Preparing to unpack .../77-python3-iniconfig_1.1.1-2_all.deb ... Unpacking python3-iniconfig (1.1.1-2) ... Selecting previously unselected package python3-natsort. Preparing to unpack .../78-python3-natsort_8.0.2-2_all.deb ... Unpacking python3-natsort (8.0.2-2) ... Selecting previously unselected package python3-numpy. Preparing to unpack .../79-python3-numpy_1%3a1.26.4+ds-12_amd64.deb ... Unpacking python3-numpy (1:1.26.4+ds-12) ... Selecting previously unselected package python3-ncls. Preparing to unpack .../80-python3-ncls_0.0.63-hotfix+ds-1+b6_amd64.deb ... Unpacking python3-ncls (0.0.63-hotfix+ds-1+b6) ... Selecting previously unselected package python3-packaging. Preparing to unpack .../81-python3-packaging_24.2-1_all.deb ... Unpacking python3-packaging (24.2-1) ... Selecting previously unselected package python3-tz. Preparing to unpack .../82-python3-tz_2024.2-1_all.deb ... Unpacking python3-tz (2024.2-1) ... Selecting previously unselected package python3-pandas-lib:amd64. Preparing to unpack .../83-python3-pandas-lib_2.2.3+dfsg-5+b1_amd64.deb ... Unpacking python3-pandas-lib:amd64 (2.2.3+dfsg-5+b1) ... Selecting previously unselected package python3-pandas. Preparing to unpack .../84-python3-pandas_2.2.3+dfsg-5_all.deb ... Unpacking python3-pandas (2.2.3+dfsg-5) ... Selecting previously unselected package python3-pluggy. Preparing to unpack .../85-python3-pluggy_1.5.0-1_all.deb ... Unpacking python3-pluggy (1.5.0-1) ... Selecting previously unselected package python3-tabulate. Preparing to unpack .../86-python3-tabulate_0.9.0-1_all.deb ... Unpacking python3-tabulate (0.9.0-1) ... Selecting previously unselected package python3-pyrle. Preparing to unpack .../87-python3-pyrle_0.0.33-4.1+b2_amd64.deb ... Unpacking python3-pyrle (0.0.33-4.1+b2) ... Selecting previously unselected package python3-pytest. Preparing to unpack .../88-python3-pytest_8.3.4-1_all.deb ... Unpacking python3-pytest (8.3.4-1) ... Selecting previously unselected package python3-pytest-xdist. Preparing to unpack .../89-python3-pytest-xdist_3.6.1-1_all.deb ... Unpacking python3-pytest-xdist (3.6.1-1) ... Selecting previously unselected package python3-sorted-nearest. Preparing to unpack .../90-python3-sorted-nearest_0.0.39+dfsg-3_amd64.deb ... Unpacking python3-sorted-nearest (0.0.39+dfsg-3) ... Selecting previously unselected package samtools. Preparing to unpack .../91-samtools_1.20-3_amd64.deb ... Unpacking samtools (1.20-3) ... Setting up libhtscodecs2:amd64 (1.6.1-1) ... Setting up media-types (10.1.0) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up libkeyutils1:amd64 (1.6.3-4) ... Setting up libicu72:amd64 (72.1-6) ... Setting up bsdextrautils (2.40.4-1) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libtirpc-common (1.3.4+ds-1.3) ... Setting up libdebhelper-perl (13.23) ... Setting up libbrotli1:amd64 (1.1.0-2+b6) ... Setting up libmagic1t64:amd64 (1:5.45-3+b1) ... Setting up libnghttp2-14:amd64 (1.64.0-1) ... Setting up libdeflate0:amd64 (1.23-1+b1) ... Setting up gettext-base (0.22.5-4) ... Setting up m4 (1.4.19-5) ... Setting up libcom-err2:amd64 (1.47.2-1) ... Setting up file (1:5.45-3+b1) ... Setting up libelf1t64:amd64 (0.192-4) ... Setting up libkrb5support0:amd64 (1.21.3-3) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-8+b1) ... Setting up tzdata (2024b-6) ... Current default time zone: 'Etc/UTC' Local time is now: Tue Feb 24 15:19:46 UTC 2026. Universal Time is now: Tue Feb 24 15:19:46 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libpython3.13-minimal:amd64 (3.13.1-3) ... Setting up autotools-dev (20220109.1) ... Setting up libblas3:amd64 (3.12.0-4) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libncurses6:amd64 (6.5-2+b1) ... Setting up libunistring5:amd64 (1.3-1) ... Setting up autopoint (0.22.5-4) ... Setting up libk5crypto3:amd64 (1.21.3-3) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-8+b1) ... Setting up libgfortran5:amd64 (14.2.0-12) ... Setting up autoconf (2.72-3) ... Setting up libnghttp3-9:amd64 (1.6.0-2) ... Setting up libffi8:amd64 (3.4.6-1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:amd64 (0.0.8-1+b2) ... Setting up libtasn1-6:amd64 (4.19.0-3+b3) ... Setting up python3.13-minimal (3.13.1-3) ... Setting up netbase (6.4) ... Setting up libngtcp2-16:amd64 (1.9.1-1) ... Setting up libkrb5-3:amd64 (1.21.3-3) ... Setting up libssh2-1t64:amd64 (1.11.1-1) ... Setting up readline-common (8.2-6) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up bedtools (2.31.1+dfsg-2) ... Setting up libldap2:amd64 (2.6.9+dfsg-1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up liblapack3:amd64 (3.12.0-4) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up gettext (0.22.5-4) ... Setting up libtool (2.5.4-2) ... Setting up libidn2-0:amd64 (2.3.7-2+b1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libp11-kit0:amd64 (0.25.5-3) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-3) ... Setting up libreadline8t64:amd64 (8.2-6) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-7) ... Setting up libpython3.13-stdlib:amd64 (3.13.1-3) ... Setting up libgnutls30t64:amd64 (3.8.8-2) ... Setting up libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ... Setting up python3.13 (3.13.1-3) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpsl5t64:amd64 (0.21.2-1.1+b1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libnsl2:amd64 (1.3.0-3+b3) ... Setting up libngtcp2-crypto-gnutls8:amd64 (1.9.1-1) ... Setting up libpython3.12-stdlib:amd64 (3.12.8-5) ... Setting up python3.12 (3.12.8-5) ... Setting up libcurl3t64-gnutls:amd64 (8.11.1-1+b1) ... Setting up debhelper (13.23) ... Setting up libhts3t64:amd64 (1.20+ds-2) ... Setting up libpython3-stdlib:amd64 (3.12.8-1) ... Setting up python3 (3.12.8-1) ... Setting up python3-sortedcontainers (2.4.0-2) ... Setting up python3-zipp (3.21.0-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up python3-tz (2024.2-1) ... Setting up python3-natsort (8.0.2-2) ... Setting up samtools (1.20-3) ... Setting up python3-packaging (24.2-1) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up python3-pluggy (1.5.0-1) ... Setting up python3-dateutil (2.9.0-3) ... Setting up python3-execnet (2.1.1-1) ... Setting up python3-more-itertools (10.6.0-1) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up python3-attr (24.3.0-1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up python3-pytest (8.3.4-1) ... Setting up python3-hypothesis (6.122.1-1) ... Setting up python3-typeguard (4.4.1-1) ... Setting up python3-tabulate (0.9.0-1) ... Setting up python3-all (3.12.8-1) ... Setting up python3-inflect (7.3.1-2) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-pkg-resources (75.6.0-1) ... Setting up python3-setuptools (75.6.0-1) ... Setting up python3-pytest-xdist (3.6.1-1) ... Setting up python3-numpy (1:1.26.4+ds-12) ... Setting up python3-ncls (0.0.63-hotfix+ds-1+b6) ... Setting up dh-python (6.20250108) ... Setting up python3-pandas-lib:amd64 (2.2.3+dfsg-5+b1) ... Setting up python3-sorted-nearest (0.0.39+dfsg-3) ... Setting up python3-pandas (2.2.3+dfsg-5) ... Setting up python3-pyrle (0.0.33-4.1+b2) ... Processing triggers for libc-bin (2.40-5) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/pyranges-0.0.111+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../pyranges_0.0.111+ds-8_source.changes dpkg-buildpackage: info: source package pyranges dpkg-buildpackage: info: source version 0.0.111+ds-8 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 dpkg-source: info: using options from pyranges-0.0.111+ds/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ debian/rules clean dh clean --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py clean 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.13' does not exist -- can't clean it I: pybuild base:311: python3.12 setup.py clean 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.12' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py config I: pybuild base:311: python3.12 setup.py config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3.13 setup.py build I: pybuild base:311: /usr/bin/python3 setup.py build debian/rules execute_after_dh_auto_build make[1]: Entering directory '/build/reproducible-path/pyranges-0.0.111+ds' echo 'Generating corresponding files ...' Generating corresponding files ... cat debian/missing-sources/test_sorted.sam| samtools view -Sb - > tests/test_data/test_sorted.bam cat debian/missing-sources/control.sam| samtools view -Sb - > pyranges/example_data/control.bam samtools index tests/test_data/test_sorted.bam tests/test_data/test_sorted.bam.bai samtools index pyranges/example_data/control.bam pyranges/example_data/control.bam.bai make[1]: Leaving directory '/build/reproducible-path/pyranges-0.0.111+ds' dh_auto_test -O--buildsystem=pybuild I: pybuild pybuild:308: mkdir -pv /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges && cp -av /build/reproducible-path/pyranges-0.0.111+ds/tests/*.bed /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests && cp -av /build/reproducible-path/pyranges-0.0.111+ds/tests/test_data /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests && cp -av /build/reproducible-path/pyranges-0.0.111+ds/tests/data /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests && cp -av /build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges '/build/reproducible-path/pyranges-0.0.111+ds/tests/chip_10.bed' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/chip_10.bed' '/build/reproducible-path/pyranges-0.0.111+ds/tests/f1.bed' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/f1.bed' '/build/reproducible-path/pyranges-0.0.111+ds/tests/f2.bed' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/f2.bed' '/build/reproducible-path/pyranges-0.0.111+ds/tests/test_data' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_data' '/build/reproducible-path/pyranges-0.0.111+ds/tests/test_data/test_sorted.bam' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_data/test_sorted.bam' '/build/reproducible-path/pyranges-0.0.111+ds/tests/test_data/test_sorted.bam.bai' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_data/test_sorted.bam.bai' '/build/reproducible-path/pyranges-0.0.111+ds/tests/test_data/ensembl.gtf' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_data/ensembl.gtf' '/build/reproducible-path/pyranges-0.0.111+ds/tests/test_data/gencode.gff3' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_data/gencode.gff3' '/build/reproducible-path/pyranges-0.0.111+ds/tests/test_data/ucsc_df_to_parse.txt' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_data/ucsc_df_to_parse.txt' '/build/reproducible-path/pyranges-0.0.111+ds/tests/data' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/data' '/build/reproducible-path/pyranges-0.0.111+ds/tests/data/test_data.py' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/data/test_data.py' '/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/control.bam' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/example_data/control.bam' '/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/control.bam.bai' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/example_data/control.bam.bai' '/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/exons.bed' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/example_data/exons.bed' '/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/ensembl.gtf' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/example_data/ensembl.gtf' '/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/ucsc_human.bed.gz' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/example_data/ucsc_human.bed.gz' '/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/chipseq_background.bed' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/example_data/chipseq_background.bed' '/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/f2.bed' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/example_data/f2.bed' '/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/bw.bw' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/example_data/bw.bw' '/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/f1.bed' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/example_data/f1.bed' '/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/cpg.bed' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/example_data/cpg.bed' '/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/lamina.bed' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/example_data/lamina.bed' '/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/gencode_human.gtf.gz' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/example_data/gencode_human.gtf.gz' '/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/chipseq.bed' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/example_data/chipseq.bed' '/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/aorta.bed' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/example_data/aorta.bed' '/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/ensembl_human.gtf.gz' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/example_data/ensembl_human.gtf.gz' '/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/chromsizes.bed' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/example_data/chromsizes.bed' '/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/aorta2.bed' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/example_data/aorta2.bed' I: pybuild base:311: cd /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build; python3.13 -m pytest -v -n 42 ============================= test session starts ============================== platform linux -- Python 3.13.1, pytest-8.3.4, pluggy-1.5.0 -- /usr/bin/python3.13 cachedir: .pytest_cache hypothesis profile 'default' -> database=DirectoryBasedExampleDatabase(PosixPath('/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/.hypothesis/examples')) rootdir: /build/reproducible-path/pyranges-0.0.111+ds plugins: hypothesis-6.122.1, typeguard-4.4.1, xdist-3.6.1 created: 42/42 workers 42 workers [531 items] scheduling tests via LoadScheduling tests/test_binary.py::test_nearest[upstream-True-same] tests/test_binary.py::test_coverage[same] tests/data/test_data.py::test_all_data tests/test_binary.py::test_intersect[same] tests/test_binary.py::test_k_nearest[upstream-False-same-last] tests/test_binary.py::test_set_union[False] tests/test_concat.py::test_concat_unstranded_stranded tests/test_binary.py::test_k_nearest[upstream-True-same-last] tests/test_binary.py::test_nearest[None-True-same] tests/test_binary.py::test_nearest[None-False-same] tests/test_binary.py::test_join[opposite] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain10-method_chain10] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain13-method_chain13] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain4-method_chain4] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain16-method_chain16] tests/test_binary.py::test_nearest[upstream-False-same] tests/test_change_chromosome_custom.py::test_change_chromosomes tests/test_binary.py::test_jaccard[same] tests/test_binary.py::test_k_nearest[None-True-same-last] tests/test_binary.py::test_nearest[downstream-False-same] tests/test_binary.py::test_k_nearest[downstream-True-same-last] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain22-method_chain22] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain7-method_chain7] tests/test_binary.py::test_nearest[downstream-True-same] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain19-method_chain19] tests/test_binary.py::test_k_nearest[None-False-same-last] tests/test_binary.py::test_subtraction[opposite] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain1-method_chain1] tests/test_binary.py::test_overlap[same] tests/test_binary.py::test_k_nearest[downstream-False-same-last] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain25-method_chain25] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain34-method_chain34] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain43-method_chain43] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain31-method_chain31] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain37-method_chain37] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain28-method_chain28] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain40-method_chain40] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain46-method_chain46] [gw21] [ 0%] PASSED tests/test_change_chromosome_custom.py::test_change_chromosomes tests/test_concat.py::test_concat_stranded_unstranded tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain52-method_chain52] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain58-method_chain58] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain49-method_chain49] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain55-method_chain55] [gw22] [ 0%] PASSED tests/test_concat.py::test_concat_unstranded_stranded tests/test_count_overlaps.py::test_strand_vs_strand_same [gw21] [ 0%] PASSED tests/test_concat.py::test_concat_stranded_unstranded tests/test_concat.py::test_concat_unstranded_unstranded [gw21] [ 0%] PASSED tests/test_concat.py::test_concat_unstranded_unstranded tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain61-method_chain61] [gw22] [ 0%] PASSED tests/test_count_overlaps.py::test_strand_vs_strand_same tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain0-method_chain0] [gw0] [ 1%] PASSED tests/data/test_data.py::test_all_data tests/test_binary.py::test_set_intersect[False] [gw26] [ 1%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain16-method_chain16] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain17-method_chain17] [gw38] [ 1%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain46-method_chain46] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain47-method_chain47] [gw34] [ 1%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain34-method_chain34] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain35-method_chain35] [gw30] [ 1%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain25-method_chain25] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain26-method_chain26] [gw33] [ 2%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain31-method_chain31] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain32-method_chain32] [gw37] [ 2%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain43-method_chain43] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain44-method_chain44] [gw27] [ 2%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain13-method_chain13] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain14-method_chain14] [gw29] [ 2%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain19-method_chain19] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain20-method_chain20] [gw41] [ 2%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain58-method_chain58] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain59-method_chain59] [gw25] [ 3%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain10-method_chain10] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain11-method_chain11] [gw28] [ 3%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain22-method_chain22] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain23-method_chain23] [gw31] [ 3%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain28-method_chain28] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain29-method_chain29] [gw21] [ 3%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain61-method_chain61] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain62-method_chain62] [gw32] [ 3%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain37-method_chain37] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain38-method_chain38] [gw40] [ 3%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain55-method_chain55] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain56-method_chain56] [gw20] [ 4%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain1-method_chain1] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain2-method_chain2] [gw23] [ 4%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain4-method_chain4] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain5-method_chain5] [gw24] [ 4%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain7-method_chain7] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain8-method_chain8] [gw36] [ 4%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain49-method_chain49] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain50-method_chain50] [gw35] [ 4%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain40-method_chain40] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain41-method_chain41] [gw39] [ 5%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain52-method_chain52] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain53-method_chain53] [gw22] [ 5%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain0-method_chain0] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain64-method_chain64] [gw26] [ 5%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain17-method_chain17] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain18-method_chain18] [gw38] [ 5%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain47-method_chain47] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain48-method_chain48] [gw33] [ 5%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain32-method_chain32] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain33-method_chain33] [gw29] [ 6%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain20-method_chain20] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain21-method_chain21] [gw37] [ 6%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain44-method_chain44] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain45-method_chain45] [gw28] [ 6%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain23-method_chain23] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain24-method_chain24] [gw27] [ 6%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain14-method_chain14] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain15-method_chain15] [gw41] [ 6%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain59-method_chain59] [gw30] [ 6%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain26-method_chain26] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain60-method_chain60] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain27-method_chain27] [gw31] [ 7%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain29-method_chain29] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain30-method_chain30] [gw25] [ 7%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain11-method_chain11] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain12-method_chain12] [gw21] [ 7%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain62-method_chain62] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain63-method_chain63] [gw20] [ 7%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain2-method_chain2] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain3-method_chain3] [gw24] [ 7%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain8-method_chain8] [gw22] [ 8%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain64-method_chain64] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain9-method_chain9] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain65-method_chain65] [gw34] [ 8%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain35-method_chain35] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain36-method_chain36] [gw32] [ 8%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain38-method_chain38] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain39-method_chain39] [gw26] [ 8%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain18-method_chain18] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain67-method_chain67] [gw40] [ 8%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain56-method_chain56] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain57-method_chain57] [gw36] [ 9%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain50-method_chain50] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain51-method_chain51] [gw38] [ 9%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain48-method_chain48] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain70-method_chain70] [gw33] [ 9%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain33-method_chain33] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain73-method_chain73] [gw37] [ 9%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain45-method_chain45] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain79-method_chain79] [gw39] [ 9%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain53-method_chain53] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain54-method_chain54] [gw35] [ 9%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain41-method_chain41] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain42-method_chain42] [gw28] [ 10%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain24-method_chain24] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain82-method_chain82] [gw27] [ 10%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain15-method_chain15] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain85-method_chain85] [gw31] [ 10%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain30-method_chain30] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain94-method_chain94] [gw30] [ 10%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain27-method_chain27] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain91-method_chain91] [gw23] [ 10%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain5-method_chain5] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain6-method_chain6] [gw41] [ 11%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain60-method_chain60] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain88-method_chain88] [gw29] [ 11%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain21-method_chain21] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain76-method_chain76] [gw22] [ 11%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain65-method_chain65] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain66-method_chain66] [gw21] [ 11%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain63-method_chain63] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain100-method_chain100] [gw26] [ 11%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain67-method_chain67] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain68-method_chain68] [gw24] [ 12%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain9-method_chain9] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain106-method_chain106] [gw25] [ 12%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain12-method_chain12] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain97-method_chain97] [gw32] [ 12%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain39-method_chain39] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain112-method_chain112] [gw37] [ 12%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain79-method_chain79] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain80-method_chain80] [gw36] [ 12%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain51-method_chain51] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain118-method_chain118] [gw20] [ 12%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain3-method_chain3] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain103-method_chain103] [gw40] [ 13%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain57-method_chain57] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain115-method_chain115] [gw34] [ 13%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain36-method_chain36] [gw33] [ 13%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain73-method_chain73] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain109-method_chain109] [gw38] [ 13%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain70-method_chain70] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain74-method_chain74] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain71-method_chain71] [gw28] [ 13%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain82-method_chain82] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain83-method_chain83] [gw35] [ 14%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain42-method_chain42] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain124-method_chain124] [gw31] [ 14%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain94-method_chain94] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain95-method_chain95] [gw22] [ 14%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain66-method_chain66] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain130-method_chain130] [gw29] [ 14%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain76-method_chain76] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain77-method_chain77] [gw30] [ 14%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain91-method_chain91] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain92-method_chain92] [gw23] [ 15%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain6-method_chain6] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain127-method_chain127] [gw24] [ 15%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain106-method_chain106] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain107-method_chain107] [gw26] [ 15%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain68-method_chain68] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain69-method_chain69] [gw21] [ 15%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain100-method_chain100] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain101-method_chain101] [gw41] [ 15%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain88-method_chain88] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain89-method_chain89] [gw25] [ 16%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain97-method_chain97] [gw27] [ 16%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain85-method_chain85] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain98-method_chain98] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain86-method_chain86] [gw37] [ 16%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain80-method_chain80] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain81-method_chain81] [gw36] [ 16%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain118-method_chain118] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain119-method_chain119] [gw40] [ 16%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain115-method_chain115] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain116-method_chain116] [gw39] [ 16%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain54-method_chain54] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain121-method_chain121] [gw33] [ 17%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain74-method_chain74] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain75-method_chain75] [gw38] [ 17%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain71-method_chain71] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain72-method_chain72] [gw32] [ 17%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain112-method_chain112] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain113-method_chain113] [gw31] [ 17%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain95-method_chain95] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain96-method_chain96] [gw34] [ 17%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain109-method_chain109] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain110-method_chain110] [gw28] [ 18%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain83-method_chain83] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain84-method_chain84] [gw35] [ 18%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain124-method_chain124] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain125-method_chain125] [gw22] [ 18%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain130-method_chain130] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain131-method_chain131] [gw30] [ 18%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain92-method_chain92] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain93-method_chain93] [gw26] [ 18%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain69-method_chain69] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain133-method_chain133] [gw29] [ 19%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain77-method_chain77] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain78-method_chain78] [gw23] [ 19%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain127-method_chain127] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain128-method_chain128] [gw37] [ 19%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain81-method_chain81] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain135-method_chain135] [gw40] [ 19%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain116-method_chain116] [gw24] [ 19%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain107-method_chain107] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain117-method_chain117] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain108-method_chain108] [gw20] [ 19%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain103-method_chain103] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain104-method_chain104] [gw21] [ 20%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain101-method_chain101] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain102-method_chain102] [gw39] [ 20%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain121-method_chain121] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain122-method_chain122] [gw38] [ 20%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain72-method_chain72] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain139-method_chain139] [gw32] [ 20%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain113-method_chain113] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain114-method_chain114] [gw36] [ 20%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain119-method_chain119] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain120-method_chain120] [gw31] [ 21%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain96-method_chain96] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain141-method_chain141] [gw33] [ 21%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain75-method_chain75] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain137-method_chain137] [gw30] [ 21%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain93-method_chain93] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain145-method_chain145] [gw41] [ 21%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain89-method_chain89] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain90-method_chain90] [gw27] [ 21%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain86-method_chain86] [gw35] [ 22%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain125-method_chain125] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain87-method_chain87] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain126-method_chain126] [gw25] [ 22%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain98-method_chain98] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain99-method_chain99] [gw22] [ 22%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain131-method_chain131] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain132-method_chain132] [gw34] [ 22%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain110-method_chain110] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain111-method_chain111] [gw23] [ 22%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain128-method_chain128] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain129-method_chain129] [gw29] [ 22%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain78-method_chain78] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain147-method_chain147] [gw40] [ 23%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain117-method_chain117] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain149-method_chain149] [gw28] [ 23%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain84-method_chain84] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain143-method_chain143] [gw20] [ 23%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain104-method_chain104] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain105-method_chain105] [gw24] [ 23%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain108-method_chain108] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain151-method_chain151] [gw32] [ 23%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain114-method_chain114] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain155-method_chain155] [gw39] [ 24%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain122-method_chain122] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain123-method_chain123] [gw21] [ 24%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain102-method_chain102] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain153-method_chain153] [gw37] [ 24%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain135-method_chain135] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain136-method_chain136] [gw31] [ 24%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain141-method_chain141] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain142-method_chain142] [gw38] [ 24%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain139-method_chain139] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain140-method_chain140] [gw30] [ 25%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain145-method_chain145] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain146-method_chain146] [gw36] [ 25%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain120-method_chain120] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain157-method_chain157] [gw26] [ 25%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain133-method_chain133] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain134-method_chain134] [gw22] [ 25%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain132-method_chain132] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain167-method_chain167] [gw23] [ 25%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain129-method_chain129] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain171-method_chain171] [gw34] [ 25%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain111-method_chain111] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain169-method_chain169] [gw41] [ 26%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain90-method_chain90] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain159-method_chain159] [gw33] [ 26%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain137-method_chain137] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain138-method_chain138] [gw35] [ 26%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain126-method_chain126] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain163-method_chain163] [gw27] [ 26%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain87-method_chain87] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain161-method_chain161] [gw25] [ 26%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain99-method_chain99] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain165-method_chain165] [gw28] [ 27%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain143-method_chain143] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain144-method_chain144] [gw39] [ 27%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain123-method_chain123] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain175-method_chain175] [gw32] [ 27%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain155-method_chain155] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain156-method_chain156] [gw31] [ 27%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain142-method_chain142] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain179-method_chain179] [gw40] [ 27%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain149-method_chain149] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain150-method_chain150] [gw30] [ 28%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain146-method_chain146] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain183-method_chain183] [gw20] [ 28%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain105-method_chain105] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain173-method_chain173] [gw22] [ 28%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain167-method_chain167] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain168-method_chain168] [gw24] [ 28%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain151-method_chain151] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain152-method_chain152] [gw21] [ 28%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain153-method_chain153] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain154-method_chain154] [gw34] [ 29%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain169-method_chain169] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain170-method_chain170] [gw38] [ 29%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain140-method_chain140] [gw29] [ 29%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain147-method_chain147] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain181-method_chain181] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain148-method_chain148] [gw36] [ 29%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain157-method_chain157] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain158-method_chain158] [gw37] [ 29%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain136-method_chain136] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain177-method_chain177] [gw23] [ 29%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain171-method_chain171] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain172-method_chain172] [gw35] [ 30%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain163-method_chain163] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain164-method_chain164] [gw41] [ 30%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain159-method_chain159] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain160-method_chain160] [gw25] [ 30%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain165-method_chain165] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain166-method_chain166] [gw28] [ 30%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain144-method_chain144] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain189-method_chain189] [gw27] [ 30%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain161-method_chain161] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain162-method_chain162] [gw26] [ 31%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain134-method_chain134] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain185-method_chain185] [gw31] [ 31%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain179-method_chain179] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain180-method_chain180] [gw39] [ 31%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain175-method_chain175] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain176-method_chain176] [gw33] [ 31%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain138-method_chain138] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain187-method_chain187] [gw34] [ 31%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain170-method_chain170] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain201-method_chain201] [gw32] [ 32%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain156-method_chain156] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain191-method_chain191] [gw38] [ 32%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain181-method_chain181] [gw14] [ 32%] PASSED tests/test_binary.py::test_join[opposite] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain182-method_chain182] tests/test_binary.py::test_reldist [gw23] [ 32%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain172-method_chain172] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain207-method_chain207] [gw20] [ 32%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain173-method_chain173] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain174-method_chain174] [gw40] [ 32%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain150-method_chain150] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain193-method_chain193] [gw35] [ 33%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain164-method_chain164] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain209-method_chain209] [gw37] [ 33%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain177-method_chain177] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain178-method_chain178] [gw22] [ 33%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain168-method_chain168] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain195-method_chain195] [gw36] [ 33%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain158-method_chain158] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain205-method_chain205] [gw25] [ 33%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain166-method_chain166] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain213-method_chain213] [gw41] [ 34%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain160-method_chain160] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain211-method_chain211] [gw30] [ 34%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain183-method_chain183] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain184-method_chain184] [gw27] [ 34%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain162-method_chain162] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain215-method_chain215] [gw39] [ 34%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain176-method_chain176] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain217-method_chain217] [gw29] [ 34%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain148-method_chain148] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain203-method_chain203] [gw28] [ 35%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain189-method_chain189] [gw3] [ 35%] PASSED tests/test_binary.py::test_intersect[same] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain190-method_chain190] [gw31] [ 35%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain180-method_chain180] tests/test_binary.py::test_intersect[opposite] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain216-method_chain216] [gw2] [ 35%] PASSED tests/test_binary.py::test_overlap[same] tests/test_binary.py::test_overlap[opposite] [gw21] [ 35%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain154-method_chain154] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain199-method_chain199] [gw24] [ 35%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain152-method_chain152] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain197-method_chain197] [gw26] [ 36%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain185-method_chain185] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain186-method_chain186] [gw32] [ 36%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain191-method_chain191] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain192-method_chain192] [gw37] [ 36%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain178-method_chain178] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain220-method_chain220] [gw23] [ 36%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain207-method_chain207] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain208-method_chain208] [gw40] [ 36%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain193-method_chain193] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain194-method_chain194] [gw20] [ 37%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain174-method_chain174] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain219-method_chain219] [gw9] [ 37%] PASSED tests/test_binary.py::test_nearest[upstream-False-same] [gw35] [ 37%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain209-method_chain209] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain210-method_chain210] [gw22] [ 37%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain195-method_chain195] tests/test_binary.py::test_nearest[upstream-False-opposite] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain196-method_chain196] [gw25] [ 37%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain213-method_chain213] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain214-method_chain214] [gw36] [ 38%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain205-method_chain205] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain206-method_chain206] [gw41] [ 38%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain211-method_chain211] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain212-method_chain212] [gw27] [ 38%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain215-method_chain215] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain222-method_chain222] [gw31] [ 38%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain216-method_chain216] [gw38] [ 38%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain182-method_chain182] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain225-method_chain225] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain218-method_chain218] [gw28] [ 38%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain190-method_chain190] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain224-method_chain224] [gw39] [ 39%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain217-method_chain217] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain223-method_chain223] [gw33] [ 39%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain187-method_chain187] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain188-method_chain188] [gw30] [ 39%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain184-method_chain184] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain221-method_chain221] [gw29] [ 39%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain203-method_chain203] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain204-method_chain204] [gw11] [ 39%] PASSED tests/test_binary.py::test_nearest[downstream-False-same] [gw34] [ 40%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain201-method_chain201] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain202-method_chain202] tests/test_binary.py::test_nearest[downstream-False-opposite] [gw32] [ 40%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain192-method_chain192] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain227-method_chain227] [gw20] [ 40%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain219-method_chain219] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain231-method_chain231] [gw40] [ 40%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain194-method_chain194] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain230-method_chain230] [gw37] [ 40%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain220-method_chain220] [gw25] [ 41%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain214-method_chain214] [gw13] [ 41%] PASSED tests/test_binary.py::test_jaccard[same] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain228-method_chain228] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain234-method_chain234] tests/test_binary.py::test_join[False] [gw35] [ 41%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain210-method_chain210] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain232-method_chain232] [gw41] [ 41%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain212-method_chain212] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain236-method_chain236] [gw23] [ 41%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain208-method_chain208] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain229-method_chain229] [gw26] [ 41%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain186-method_chain186] [gw21] [ 42%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain199-method_chain199] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain226-method_chain226] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain200-method_chain200] [gw36] [ 42%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain206-method_chain206] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain235-method_chain235] [gw7] [ 42%] PASSED tests/test_binary.py::test_nearest[None-False-same] [gw24] [ 42%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain197-method_chain197] [gw31] [ 42%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain225-method_chain225] tests/test_binary.py::test_nearest[None-False-opposite] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain238-method_chain238] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain198-method_chain198] [gw39] [ 43%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain223-method_chain223] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain241-method_chain241] [gw28] [ 43%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain224-method_chain224] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain240-method_chain240] [gw38] [ 43%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain218-method_chain218] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain239-method_chain239] [gw30] [ 43%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain221-method_chain221] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain243-method_chain243] [gw0] [ 43%] PASSED tests/test_binary.py::test_set_intersect[False] tests/test_binary.py::test_set_intersect[same] [gw27] [ 44%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain222-method_chain222] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain237-method_chain237] [gw37] [ 44%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain228-method_chain228] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain249-method_chain249] [gw22] [ 44%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain196-method_chain196] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain233-method_chain233] [gw29] [ 44%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain204-method_chain204] [gw32] [ 44%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain227-method_chain227] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain244-method_chain244] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain246-method_chain246] [gw8] [ 45%] PASSED tests/test_binary.py::test_nearest[upstream-True-same] [gw40] [ 45%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain230-method_chain230] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain248-method_chain248] tests/test_binary.py::test_nearest[upstream-True-opposite] [gw33] [ 45%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain188-method_chain188] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain242-method_chain242] [gw23] [ 45%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain229-method_chain229] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain253-method_chain253] [gw6] [ 45%] PASSED tests/test_binary.py::test_nearest[None-True-same] [gw26] [ 45%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain226-method_chain226] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain254-method_chain254] tests/test_binary.py::test_nearest[None-True-opposite] [gw10] [ 46%] PASSED tests/test_binary.py::test_nearest[downstream-True-same] [gw34] [ 46%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain202-method_chain202] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain245-method_chain245] tests/test_binary.py::test_nearest[downstream-True-opposite] [gw28] [ 46%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain240-method_chain240] [gw20] [ 46%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain231-method_chain231] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain260-method_chain260] [gw39] [ 46%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain241-method_chain241] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain247-method_chain247] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain259-method_chain259] [gw38] [ 47%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain239-method_chain239] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain261-method_chain261] [gw25] [ 47%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain234-method_chain234] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain250-method_chain250] [gw16] [ 47%] PASSED tests/test_binary.py::test_k_nearest[upstream-False-same-last] tests/test_binary.py::test_k_nearest[upstream-False-False-last] [gw31] [ 47%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain238-method_chain238] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain257-method_chain257] [gw30] [ 47%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain243-method_chain243] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain262-method_chain262] [gw36] [ 48%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain235-method_chain235] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain256-method_chain256] [gw21] [ 48%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain200-method_chain200] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain255-method_chain255] [gw35] [ 48%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain232-method_chain232] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain251-method_chain251] [gw29] [ 48%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain244-method_chain244] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain267-method_chain267] [gw24] [ 48%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain198-method_chain198] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain258-method_chain258] [gw27] [ 48%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain237-method_chain237] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain264-method_chain264] [gw33] [ 49%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain242-method_chain242] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain270-method_chain270] [gw37] [ 49%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain249-method_chain249] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain265-method_chain265] [gw41] [ 49%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain236-method_chain236] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain252-method_chain252] [gw12] [ 49%] PASSED tests/test_binary.py::test_k_nearest[downstream-False-same-last] [gw22] [ 49%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain233-method_chain233] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain266-method_chain266] tests/test_binary.py::test_k_nearest[downstream-False-False-last] [gw23] [ 50%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain253-method_chain253] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain271-method_chain271] [gw40] [ 50%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain248-method_chain248] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain269-method_chain269] [gw38] [ 50%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain261-method_chain261] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain277-method_chain277] [gw28] [ 50%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain260-method_chain260] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain274-method_chain274] [gw26] [ 50%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain254-method_chain254] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain272-method_chain272] [gw32] [ 51%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain246-method_chain246] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain268-method_chain268] [gw30] [ 51%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain262-method_chain262] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain280-method_chain280] [gw20] [ 51%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain247-method_chain247] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain275-method_chain275] [gw39] [ 51%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain259-method_chain259] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain276-method_chain276] [gw36] [ 51%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain256-method_chain256] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain281-method_chain281] [gw21] [ 51%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain255-method_chain255] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain282-method_chain282] [gw29] [ 52%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain267-method_chain267] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain284-method_chain284] [gw24] [ 52%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain258-method_chain258] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain285-method_chain285] [gw27] [ 52%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain264-method_chain264] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain286-method_chain286] [gw33] [ 52%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain270-method_chain270] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain287-method_chain287] [gw31] [ 52%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain257-method_chain257] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain279-method_chain279] [gw37] [ 53%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain265-method_chain265] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain288-method_chain288] [gw19] [ 53%] PASSED tests/test_binary.py::test_k_nearest[None-False-same-last] tests/test_binary.py::test_k_nearest[None-False-False-last] [gw34] [ 53%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain245-method_chain245] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain273-method_chain273] [gw35] [ 53%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain251-method_chain251] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain283-method_chain283] [gw38] [ 53%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain277-method_chain277] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain293-method_chain293] [gw40] [ 54%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain269-method_chain269] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain292-method_chain292] [gw32] [ 54%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain268-method_chain268] [gw28] [ 54%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain274-method_chain274] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain296-method_chain296] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain294-method_chain294] [gw26] [ 54%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain272-method_chain272] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain295-method_chain295] [gw25] [ 54%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain250-method_chain250] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain278-method_chain278] [gw23] [ 54%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain271-method_chain271] [gw22] [ 55%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain266-method_chain266] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain291-method_chain291] [gw20] [ 55%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain275-method_chain275] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain290-method_chain290] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain298-method_chain298] [gw41] [ 55%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain252-method_chain252] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain289-method_chain289] [gw39] [ 55%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain276-method_chain276] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain299-method_chain299] [gw1] [ 55%] PASSED tests/test_binary.py::test_set_union[False] [gw31] [ 56%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain279-method_chain279] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain306-method_chain306] [gw37] [ 56%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain288-method_chain288] tests/test_binary.py::test_set_union[same] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain307-method_chain307] [gw21] [ 56%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain282-method_chain282] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain301-method_chain301] [gw38] [ 56%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain293-method_chain293] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain310-method_chain310] [gw29] [ 56%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain284-method_chain284] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain302-method_chain302] [gw33] [ 57%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain287-method_chain287] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain305-method_chain305] [gw27] [ 57%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain286-method_chain286] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain304-method_chain304] [gw34] [ 57%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain273-method_chain273] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain308-method_chain308] [gw30] [ 57%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain280-method_chain280] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain297-method_chain297] [gw40] [ 57%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain292-method_chain292] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain311-method_chain311] [gw36] [ 58%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain281-method_chain281] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain300-method_chain300] [gw4] [ 58%] PASSED tests/test_binary.py::test_coverage[same] [gw23] [ 58%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain291-method_chain291] tests/test_binary.py::test_coverage[opposite] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain316-method_chain316] [gw41] [ 58%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain289-method_chain289] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain319-method_chain319] [gw22] [ 58%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain290-method_chain290] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain317-method_chain317] [gw24] [ 58%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain285-method_chain285] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain303-method_chain303] [gw25] [ 59%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain278-method_chain278] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain315-method_chain315] [gw35] [ 59%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain283-method_chain283] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain309-method_chain309] [gw32] [ 59%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain296-method_chain296] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain312-method_chain312] [gw38] [ 59%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain310-method_chain310] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain324-method_chain324] [gw26] [ 59%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain295-method_chain295] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain314-method_chain314] [gw28] [ 60%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain294-method_chain294] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain313-method_chain313] [gw20] [ 60%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain298-method_chain298] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain318-method_chain318] [gw31] [ 60%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain306-method_chain306] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain321-method_chain321] [gw33] [ 60%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain305-method_chain305] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain326-method_chain326] [gw29] [ 60%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain302-method_chain302] [gw37] [ 61%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain307-method_chain307] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain325-method_chain325] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain322-method_chain322] [gw21] [ 61%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain301-method_chain301] [gw40] [ 61%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain311-method_chain311] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain323-method_chain323] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain330-method_chain330] [gw27] [ 61%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain304-method_chain304] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain327-method_chain327] [gw39] [ 61%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain299-method_chain299] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain320-method_chain320] [gw17] [ 61%] PASSED tests/test_binary.py::test_k_nearest[upstream-True-same-last] [gw15] [ 62%] PASSED tests/test_binary.py::test_k_nearest[downstream-True-same-last] [gw5] [ 62%] PASSED tests/test_binary.py::test_subtraction[opposite] tests/test_binary.py::test_k_nearest[upstream-True-False-last] [gw41] [ 62%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain319-method_chain319] tests/test_binary.py::test_k_nearest[downstream-True-False-last] [gw34] [ 62%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain308-method_chain308] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain333-method_chain333] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain328-method_chain328] tests/test_binary.py::test_subtraction[False] [gw22] [ 62%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain317-method_chain317] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain334-method_chain334] [gw23] [ 63%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain316-method_chain316] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain332-method_chain332] [gw36] [ 63%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain300-method_chain300] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain331-method_chain331] [gw30] [ 63%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain297-method_chain297] [gw32] [ 63%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain312-method_chain312] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain338-method_chain338] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain329-method_chain329] [gw24] [ 63%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain303-method_chain303] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain335-method_chain335] [gw35] [ 64%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain309-method_chain309] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain337-method_chain337] [gw38] [ 64%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain324-method_chain324] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain339-method_chain339] [gw25] [ 64%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain315-method_chain315] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain336-method_chain336] [gw33] [ 64%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain326-method_chain326] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain344-method_chain344] [gw26] [ 64%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain314-method_chain314] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain340-method_chain340] [gw14] [ 64%] PASSED tests/test_binary.py::test_reldist [gw29] [ 65%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain325-method_chain325] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain345-method_chain345] tests/test_binary.py::test_k_nearest[downstream-False-opposite-last] [gw28] [ 65%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain313-method_chain313] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain341-method_chain341] [gw31] [ 65%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain321-method_chain321] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain343-method_chain343] [gw20] [ 65%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain318-method_chain318] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain342-method_chain342] [gw27] [ 65%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain327-method_chain327] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain349-method_chain349] [gw37] [ 66%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain322-method_chain322] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain346-method_chain346] [gw21] [ 66%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain323-method_chain323] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain347-method_chain347] [gw34] [ 66%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain328-method_chain328] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain352-method_chain352] [gw32] [ 66%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain338-method_chain338] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain357-method_chain357] [gw39] [ 66%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain320-method_chain320] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain350-method_chain350] [gw40] [ 67%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain330-method_chain330] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain348-method_chain348] [gw36] [ 67%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain331-method_chain331] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain355-method_chain355] [gw26] [ 67%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain340-method_chain340] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain363-method_chain363] [gw23] [ 67%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain332-method_chain332] [gw35] [ 67%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain337-method_chain337] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain354-method_chain354] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain359-method_chain359] [gw41] [ 67%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain333-method_chain333] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain351-method_chain351] [gw38] [ 68%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain339-method_chain339] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain360-method_chain360] [gw22] [ 68%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain334-method_chain334] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain353-method_chain353] [gw25] [ 68%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain336-method_chain336] [gw20] [ 68%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain342-method_chain342] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain361-method_chain361] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain368-method_chain368] [gw24] [ 68%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain335-method_chain335] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain358-method_chain358] [gw28] [ 69%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain341-method_chain341] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain366-method_chain366] [gw33] [ 69%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain344-method_chain344] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain362-method_chain362] [gw29] [ 69%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain345-method_chain345] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain364-method_chain364] [gw3] [ 69%] PASSED tests/test_binary.py::test_intersect[opposite] tests/test_binary.py::test_coverage[False] [gw2] [ 69%] PASSED tests/test_binary.py::test_overlap[opposite] tests/test_binary.py::test_intersect[False] [gw30] [ 70%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain329-method_chain329] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain356-method_chain356] [gw21] [ 70%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain347-method_chain347] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain371-method_chain371] [gw27] [ 70%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain349-method_chain349] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain369-method_chain369] [gw34] [ 70%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain352-method_chain352] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain372-method_chain372] [gw18] [ 70%] PASSED tests/test_binary.py::test_k_nearest[None-True-same-last] tests/test_binary.py::test_k_nearest[None-True-False-last] [gw37] [ 70%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain346-method_chain346] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain370-method_chain370] [gw26] [ 71%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain363-method_chain363] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain377-method_chain377] [gw38] [ 71%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain360-method_chain360] [gw32] [ 71%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain357-method_chain357] [gw35] [ 71%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain359-method_chain359] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain373-method_chain373] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain381-method_chain381] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain379-method_chain379] [gw31] [ 71%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain343-method_chain343] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain367-method_chain367] [gw39] [ 72%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain350-method_chain350] [gw22] [ 72%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain353-method_chain353] [gw23] [ 72%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain354-method_chain354] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain374-method_chain374] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain382-method_chain382] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain378-method_chain378] [gw25] [ 72%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain361-method_chain361] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain383-method_chain383] [gw36] [ 72%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain355-method_chain355] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain376-method_chain376] [gw20] [ 73%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain368-method_chain368] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain384-method_chain384] [gw24] [ 73%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain358-method_chain358] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain385-method_chain385] [gw41] [ 73%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain351-method_chain351] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain380-method_chain380] [gw28] [ 73%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain366-method_chain366] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain386-method_chain386] [gw40] [ 73%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain348-method_chain348] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain375-method_chain375] [gw29] [ 74%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain364-method_chain364] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain388-method_chain388] [gw33] [ 74%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain362-method_chain362] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain387-method_chain387] [gw34] [ 74%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain372-method_chain372] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain394-method_chain394] [gw21] [ 74%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain371-method_chain371] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain392-method_chain392] [gw27] [ 74%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain369-method_chain369] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain393-method_chain393] [gw37] [ 74%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain370-method_chain370] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain395-method_chain395] [gw30] [ 75%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain356-method_chain356] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain391-method_chain391] [gw31] [ 75%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain367-method_chain367] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain400-method_chain400] [gw32] [ 75%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain373-method_chain373] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain397-method_chain397] [gw26] [ 75%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain377-method_chain377] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain396-method_chain396] [gw39] [ 75%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain374-method_chain374] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain401-method_chain401] [gw36] [ 76%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain376-method_chain376] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain405-method_chain405] [gw28] [ 76%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain386-method_chain386] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain409-method_chain409] [gw38] [ 76%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain381-method_chain381] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain398-method_chain398] [gw40] [ 76%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain375-method_chain375] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain410-method_chain410] [gw20] [ 76%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain384-method_chain384] [gw35] [ 77%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain379-method_chain379] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain406-method_chain406] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain399-method_chain399] [gw29] [ 77%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain388-method_chain388] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain411-method_chain411] [gw24] [ 77%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain385-method_chain385] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain407-method_chain407] [gw33] [ 77%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain387-method_chain387] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain412-method_chain412] [gw9] [ 77%] PASSED tests/test_binary.py::test_nearest[upstream-False-opposite] tests/test_binary.py::test_nearest[downstream-True-False] [gw23] [ 77%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain378-method_chain378] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain403-method_chain403] [gw30] [ 78%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain391-method_chain391] [gw41] [ 78%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain380-method_chain380] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain408-method_chain408] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain417-method_chain417] [gw22] [ 78%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain382-method_chain382] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain402-method_chain402] [gw11] [ 78%] PASSED tests/test_binary.py::test_nearest[downstream-False-opposite] tests/test_binary.py::test_jaccard[False] [gw25] [ 78%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain383-method_chain383] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain404-method_chain404] [gw31] [ 79%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain400-method_chain400] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain418-method_chain418] [gw28] [ 79%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain409-method_chain409] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain423-method_chain423] [gw39] [ 79%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain401-method_chain401] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain421-method_chain421] [gw34] [ 79%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain394-method_chain394] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain413-method_chain413] [gw40] [ 79%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain410-method_chain410] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain425-method_chain425] [gw27] [ 80%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain393-method_chain393] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain415-method_chain415] [gw33] [ 80%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain412-method_chain412] [gw36] [ 80%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain405-method_chain405] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain430-method_chain430] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain422-method_chain422] [gw29] [ 80%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain411-method_chain411] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain428-method_chain428] [gw37] [ 80%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain395-method_chain395] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain416-method_chain416] [gw24] [ 80%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain407-method_chain407] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain429-method_chain429] [gw26] [ 81%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain396-method_chain396] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain420-method_chain420] [gw41] [ 81%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain408-method_chain408] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain433-method_chain433] [gw21] [ 81%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain392-method_chain392] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain414-method_chain414] [gw20] [ 81%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain406-method_chain406] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain426-method_chain426] [gw30] [ 81%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain417-method_chain417] [gw32] [ 82%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain397-method_chain397] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain434-method_chain434] [gw13] [ 82%] PASSED tests/test_binary.py::test_join[False] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain419-method_chain419] tests/test_binary.py::test_join[same] [gw35] [ 82%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain399-method_chain399] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain427-method_chain427] [gw23] [ 82%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain403-method_chain403] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain432-method_chain432] [gw22] [ 82%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain402-method_chain402] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain435-method_chain435] [gw28] [ 83%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain423-method_chain423] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain439-method_chain439] [gw7] [ 83%] PASSED tests/test_binary.py::test_nearest[None-False-opposite] [gw38] [ 83%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain398-method_chain398] tests/test_binary.py::test_nearest[upstream-True-False] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain424-method_chain424] [gw39] [ 83%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain421-method_chain421] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain440-method_chain440] [gw25] [ 83%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain404-method_chain404] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain437-method_chain437] [gw36] [ 83%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain422-method_chain422] tests/test_io.py::test_read_gtf [gw36] [ 84%] PASSED tests/test_io.py::test_read_gtf tests/windows/test_windows.py::test_windows [gw36] [ 84%] PASSED tests/windows/test_windows.py::test_windows tests/windows/test_windows.py::test_windows2 [gw36] [ 84%] PASSED tests/windows/test_windows.py::test_windows2 [gw27] [ 84%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain415-method_chain415] tests/test_getset_attr.py::test_getsetattr_fails [gw27] [ 84%] PASSED tests/test_getset_attr.py::test_getsetattr_fails [gw31] [ 85%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain418-method_chain418] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain438-method_chain438] [gw40] [ 85%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain425-method_chain425] tests/test_getset_attr.py::test_getsetattr [gw40] [ 85%] PASSED tests/test_getset_attr.py::test_getsetattr [gw34] [ 85%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain413-method_chain413] tests/test_genomicfeatures.py::test_introns_single [gw37] [ 85%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain416-method_chain416] tests/test_io.py::test_read_bed [gw37] [ 86%] PASSED tests/test_io.py::test_read_bed [gw32] [ 86%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain419-method_chain419] tests/test_unary.py::test_cluster[False] [gw21] [ 86%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain414-method_chain414] [gw20] [ 86%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain426-method_chain426] tests/test_unary.py::test_merge[False] tests/test_unary.py::test_merge[True] [gw33] [ 86%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain430-method_chain430] tests/test_getset_attr.py::test_getsetattr_with_str [gw33] [ 87%] PASSED tests/test_getset_attr.py::test_getsetattr_with_str [gw30] [ 87%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain434-method_chain434] tests/test_unary.py::test_cluster[True] [gw10] [ 87%] PASSED tests/test_binary.py::test_nearest[downstream-True-opposite] tests/test_binary.py::test_nearest[downstream-False-False] [gw8] [ 87%] PASSED tests/test_binary.py::test_nearest[upstream-True-opposite] tests/test_binary.py::test_nearest[upstream-False-False] [gw26] [ 87%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain420-method_chain420] tests/test_stranded.py::test_stranded [gw26] [ 87%] PASSED tests/test_stranded.py::test_stranded [gw28] [ 88%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain439-method_chain439] tests/test_unary.py::test_windows [gw38] [ 88%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain424-method_chain424] tests/test_unary.py::test_init[False] [gw39] [ 88%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain440-method_chain440] tests/test_unary.py::test_getitem [gw41] [ 88%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain433-method_chain433] tests/test_stranded.py::test_unstrand [gw41] [ 88%] PASSED tests/test_stranded.py::test_unstrand [gw25] [ 89%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain437-method_chain437] [gw22] [ 89%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain435-method_chain435] tests/test_unary.py::test_summary [gw24] [ 89%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain429-method_chain429] tests/test_unary.py::test_merge_by[False] tests/test_pickle.py::test_pickle [gw24] [ 89%] PASSED tests/test_pickle.py::test_pickle [gw29] [ 89%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain428-method_chain428] tests/test_io.py::test_read_gff3 [gw29] [ 90%] PASSED tests/test_io.py::test_read_gff3 [gw31] [ 90%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain438-method_chain438] [gw35] [ 90%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain427-method_chain427] tests/test_unary.py::test_cluster_by[False] [gw34] [ 90%] PASSED tests/test_genomicfeatures.py::test_introns_single [gw6] [ 90%] PASSED tests/test_binary.py::test_nearest[None-True-opposite] tests/test_binary.py::test_nearest[None-False-False] [gw23] [ 90%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain432-method_chain432] tests/test_unary.py::test_merge_by[True] [gw0] [ 91%] PASSED tests/test_binary.py::test_set_intersect[same] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain263-method_chain263] [gw38] [ 91%] PASSED tests/test_unary.py::test_init[False] [gw0] [ 91%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain263-method_chain263] [gw12] [ 91%] PASSED tests/test_binary.py::test_k_nearest[downstream-False-False-last] tests/test_binary.py::test_k_nearest[downstream-True-opposite-last] [gw16] [ 91%] PASSED tests/test_binary.py::test_k_nearest[upstream-False-False-last] tests/test_binary.py::test_k_nearest[upstream-True-opposite-last] [gw39] [ 92%] PASSED tests/test_unary.py::test_getitem [gw1] [ 92%] PASSED tests/test_binary.py::test_set_union[same] tests/test_binary.py::test_overlap[False] [gw2] [ 92%] PASSED tests/test_binary.py::test_intersect[False] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain390-method_chain390] [gw19] [ 92%] PASSED tests/test_binary.py::test_k_nearest[None-False-False-last] tests/test_binary.py::test_k_nearest[None-True-opposite-last] [gw2] [ 92%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain390-method_chain390] [gw14] [ 93%] PASSED tests/test_binary.py::test_k_nearest[downstream-False-opposite-last] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain365-method_chain365] [gw14] [ 93%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain365-method_chain365] [gw4] [ 93%] PASSED tests/test_binary.py::test_coverage[opposite] tests/test_binary.py::test_subtraction[same] [gw11] [ 93%] PASSED tests/test_binary.py::test_jaccard[False] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain436-method_chain436] [gw25] [ 93%] PASSED tests/test_unary.py::test_summary [gw5] [ 93%] PASSED tests/test_binary.py::test_subtraction[False] tests/test_binary.py::test_nearest[None-True-False] [gw11] [ 94%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain436-method_chain436] [gw13] [ 94%] PASSED tests/test_binary.py::test_join[same] tests/test_unary.py::test_cluster_by[True] [gw20] [ 94%] PASSED tests/test_unary.py::test_merge[False] [gw21] [ 94%] PASSED tests/test_unary.py::test_merge[True] [gw9] [ 94%] PASSED tests/test_binary.py::test_nearest[downstream-True-False] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain431-method_chain431] [gw3] [ 95%] PASSED tests/test_binary.py::test_coverage[False] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain389-method_chain389] [gw10] [ 95%] PASSED tests/test_binary.py::test_nearest[downstream-False-False] [gw17] [ 95%] PASSED tests/test_binary.py::test_k_nearest[upstream-True-False-last] tests/test_binary.py::test_k_nearest[None-False-opposite-last] [gw8] [ 95%] PASSED tests/test_binary.py::test_nearest[upstream-False-False] [gw15] [ 95%] PASSED tests/test_binary.py::test_k_nearest[downstream-True-False-last] tests/test_binary.py::test_k_nearest[upstream-False-opposite-last] [gw9] [ 96%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain431-method_chain431] [gw7] [ 96%] PASSED tests/test_binary.py::test_nearest[upstream-True-False] tests/test_unary.py::test_init[True] [gw3] [ 96%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain389-method_chain389] [gw28] [ 96%] PASSED tests/test_unary.py::test_windows [gw22] [ 96%] PASSED tests/test_unary.py::test_merge_by[False] [gw23] [ 96%] PASSED tests/test_unary.py::test_merge_by[True] [gw6] [ 97%] PASSED tests/test_binary.py::test_nearest[None-False-False] [gw1] [ 97%] PASSED tests/test_binary.py::test_overlap[False] [gw30] [ 97%] PASSED tests/test_unary.py::test_cluster[True] [gw18] [ 97%] PASSED tests/test_binary.py::test_k_nearest[None-True-False-last] tests/test_binary.py::test_k_nearest_1_vs_nearest [gw7] [ 97%] PASSED tests/test_unary.py::test_init[True] [gw32] [ 98%] PASSED tests/test_unary.py::test_cluster[False] [gw12] [ 98%] PASSED tests/test_binary.py::test_k_nearest[downstream-True-opposite-last] [gw16] [ 98%] PASSED tests/test_binary.py::test_k_nearest[upstream-True-opposite-last] [gw19] [ 98%] PASSED tests/test_binary.py::test_k_nearest[None-True-opposite-last] [gw5] [ 98%] PASSED tests/test_binary.py::test_nearest[None-True-False] [gw4] [ 99%] PASSED tests/test_binary.py::test_subtraction[same] [gw15] [ 99%] PASSED tests/test_binary.py::test_k_nearest[upstream-False-opposite-last] [gw17] [ 99%] PASSED tests/test_binary.py::test_k_nearest[None-False-opposite-last] [gw35] [ 99%] PASSED tests/test_unary.py::test_cluster_by[False] [gw13] [ 99%] PASSED tests/test_unary.py::test_cluster_by[True] [gw18] [100%] PASSED tests/test_binary.py::test_k_nearest_1_vs_nearest =============================== warnings summary =============================== tests/conftest.py:83 /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/conftest.py:83: SyntaxWarning: invalid escape sequence '\s' sep="\s+", pyranges/__init__.py:18: 43 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/__init__.py:18: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html import pkg_resources tests/test_binary.py:118: 42 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_binary.py:118: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) tests/test_binary.py:139: 42 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_binary.py:139: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) tests/test_binary.py:160: 42 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_binary.py:160: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) tests/test_binary.py:187: 42 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_binary.py:187: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) tests/test_binary.py:212: 42 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_binary.py:212: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) tests/test_binary.py:291: 42 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_binary.py:291: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) tests/test_binary.py:329: 42 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_binary.py:329: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) tests/test_binary.py:368: 42 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_binary.py:368: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) tests/test_binary.py:392: 42 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_binary.py:392: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) tests/test_binary.py:426: 42 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_binary.py:426: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) tests/test_binary.py:516: 42 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_binary.py:516: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) tests/test_binary.py:579: 42 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_binary.py:579: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) pyranges/methods/init.py:60: 210 warnings .pybuild/cpython3_3.13_pyranges/build/tests/test_change_chromosome_custom.py: 2 warnings .pybuild/cpython3_3.13_pyranges/build/tests/test_concat.py: 8 warnings .pybuild/cpython3_3.13_pyranges/build/tests/test_count_overlaps.py: 1 warning .pybuild/cpython3_3.13_pyranges/build/tests/data/test_data.py: 9 warnings .pybuild/cpython3_3.13_pyranges/build/tests/test_do_not_error.py: 160544 warnings .pybuild/cpython3_3.13_pyranges/build/tests/test_binary.py: 159291 warnings .pybuild/cpython3_3.13_pyranges/build/tests/test_io.py: 4 warnings .pybuild/cpython3_3.13_pyranges/build/tests/windows/test_windows.py: 2 warnings .pybuild/cpython3_3.13_pyranges/build/tests/test_getset_attr.py: 3 warnings .pybuild/cpython3_3.13_pyranges/build/tests/test_stranded.py: 6 warnings .pybuild/cpython3_3.13_pyranges/build/tests/test_pickle.py: 1 warning .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py: 358 warnings .pybuild/cpython3_3.13_pyranges/build/tests/test_unary.py: 24091 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/methods/init.py:60: FutureWarning: The default of observed=False is deprecated and will be changed to True in a future version of pandas. Pass observed=False to retain current behavior or observed=True to adopt the future default and silence this warning. return {k: v for k, v in df.groupby(grpby_key)} pyranges/methods/init.py:189: 168 warnings .pybuild/cpython3_3.13_pyranges/build/tests/test_change_chromosome_custom.py: 1 warning .pybuild/cpython3_3.13_pyranges/build/tests/test_concat.py: 7 warnings .pybuild/cpython3_3.13_pyranges/build/tests/test_do_not_error.py: 4447 warnings .pybuild/cpython3_3.13_pyranges/build/tests/test_binary.py: 2000 warnings .pybuild/cpython3_3.13_pyranges/build/tests/test_stranded.py: 2 warnings .pybuild/cpython3_3.13_pyranges/build/tests/test_unary.py: 6615 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/methods/init.py:189: FutureWarning: The default of observed=False is deprecated and will be changed to True in a future version of pandas. Pass observed=False to retain current behavior or observed=True to adopt the future default and silence this warning. empty_removed = df.groupby("Chromosome") tests/test_do_not_error.py:46: 42 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_do_not_error.py:46: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) tests/test_unary.py:35: 42 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_unary.py:35: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) tests/test_unary.py:100: 42 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_unary.py:100: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) tests/test_unary.py:163: 42 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_unary.py:163: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) tests/test_unary.py:205: 42 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_unary.py:205: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) tests/test_unary.py:234: 42 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_unary.py:234: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) tests/test_unary.py:272: 42 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_unary.py:272: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) tests/test_unary.py:287: 42 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_unary.py:287: HypothesisDeprecationWarning: The return_value health check is deprecated, because this is always an error. @settings( tests/test_unary.py:315: 42 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_unary.py:315: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) .pybuild/cpython3_3.13_pyranges/build/tests/test_concat.py::test_concat_unstranded_stranded /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/methods/concat.py:47: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[NaN, NaN, NaN, '+', '-'] Categories (3, object): ['+', '-', '.']' has dtype incompatible with category, please explicitly cast to a compatible dtype first. v.loc[:, "Strand"] = type_v.cat.add_categories(["."]) .pybuild/cpython3_3.13_pyranges/build/tests/test_concat.py::test_concat_stranded_unstranded /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/methods/concat.py:47: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['+', '+', '-', NaN, NaN] Categories (3, object): ['+', '-', '.']' has dtype incompatible with category, please explicitly cast to a compatible dtype first. v.loc[:, "Strand"] = type_v.cat.add_categories(["."]) .pybuild/cpython3_3.13_pyranges/build/tests/test_concat.py: 1 warning .pybuild/cpython3_3.13_pyranges/build/tests/test_do_not_error.py: 3078 warnings .pybuild/cpython3_3.13_pyranges/build/tests/test_stranded.py: 2 warnings .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py: 119 warnings .pybuild/cpython3_3.13_pyranges/build/tests/test_unary.py: 5615 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/methods/init.py:187: FutureWarning: The default of observed=False is deprecated and will be changed to True in a future version of pandas. Pass observed=False to retain current behavior or observed=True to adopt the future default and silence this warning. empty_removed = df.groupby(["Chromosome", "Strand"]) .pybuild/cpython3_3.13_pyranges/build/tests/test_do_not_error.py: 7358 warnings .pybuild/cpython3_3.13_pyranges/build/tests/test_binary.py: 15629 warnings .pybuild/cpython3_3.13_pyranges/build/tests/test_unary.py: 17454 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/tostring2.py:31: FutureWarning: The behavior of DataFrame concatenation with empty or all-NA entries is deprecated. In a future version, this will no longer exclude empty or all-NA columns when determining the result dtypes. To retain the old behavior, exclude the relevant entries before the concat operation. df = pd.concat([plus, minus]) .pybuild/cpython3_3.13_pyranges/build/tests/test_do_not_error.py: 1565 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/pyranges.py:3779: FutureWarning: The behavior of Series.replace (and DataFrame.replace) with CategoricalDtype is deprecated. In a future version, replace will only be used for cases that preserve the categories. To change the categories, use ser.cat.rename_categories instead. other.Strand = other.Strand.replace({"+": "-", "-": "+"}) .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1217804. 1221351. 1223357. 1223968. 1227319. 1228946. 1232031.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000078808.16' 'ENSG00000078808.16' 'ENSG00000078808.16' 'ENSG00000078808.16' 'ENSG00000078808.16' 'ENSG00000078808.16']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1336515. 1337055. 1338183. 1338436. 1338653. 1339812. 1340190. 1340365. 1340503. 1342156. 1342484. 1342758. 1349350.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000107404.19' 'ENSG00000107404.19' 'ENSG00000107404.19' 'ENSG00000107404.19' 'ENSG00000107404.19' 'ENSG00000107404.19' 'ENSG00000107404.19' 'ENSG00000107404.19' 'ENSG00000107404.19' 'ENSG00000107404.19' 'ENSG00000107404.19' 'ENSG00000107404.19']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1311924. 1312147. 1313592. 1315697. 1317450. 1321096. 1321984. 1323287. 1324691.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000127054.20' 'ENSG00000127054.20' 'ENSG00000127054.20' 'ENSG00000127054.20' 'ENSG00000127054.20' 'ENSG00000127054.20' 'ENSG00000127054.20' 'ENSG00000127054.20']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1293708. 1293933. 1294199. 1294628. 1295008. 1295554. 1295938. 1296109. 1296280. 1296633. 1297933. 1298265. 1298421. 1299905. 1300068. 1300202. 1300692. 1302046. 1302975. 1305929. 1307156. 1307383. 1308018. 1309609.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1084506. 1085310. 1086012. 1087636. 1092294. 1092813. 1106127. 1106871. 1115075. 1116361.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000131591.17' 'ENSG00000131591.17' 'ENSG00000131591.17' 'ENSG00000131591.17' 'ENSG00000131591.17' 'ENSG00000131591.17' 'ENSG00000131591.17' 'ENSG00000131591.17' 'ENSG00000131591.17']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1472089. 1477350. 1478745. 1479108. 1480936. 1482303. 1482662. 1485171. 1486235. 1486668. 1487914. 1490671. 1497848.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000160072.19' 'ENSG00000160072.19' 'ENSG00000160072.19' 'ENSG00000160072.19' 'ENSG00000160072.19' 'ENSG00000160072.19' 'ENSG00000160072.19' 'ENSG00000160072.19' 'ENSG00000160072.19' 'ENSG00000160072.19' 'ENSG00000160072.19' 'ENSG00000160072.19']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1255487. 1256335. 1257130. 1257310. 1262390. 1263569. 1264830. 1266290. 1267992. 1271637. 1273885.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000160087.20' 'ENSG00000160087.20' 'ENSG00000160087.20' 'ENSG00000160087.20' 'ENSG00000160087.20' 'ENSG00000160087.20' 'ENSG00000160087.20' 'ENSG00000160087.20' 'ENSG00000160087.20' 'ENSG00000160087.20']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1173926. 1174321. 1174489. 1175034. 1179333. 1179853. 1180340. 1180884. 1181815. 1182446. 1183047. 1184091. 1185864. 1196488. 1196716. 1197186. 1197935.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000162571.13' 'ENSG00000162571.13' 'ENSG00000162571.13' 'ENSG00000162571.13' 'ENSG00000162571.13' 'ENSG00000162571.13' 'ENSG00000162571.13' 'ENSG00000162571.13' 'ENSG00000162571.13' 'ENSG00000162571.13' 'ENSG00000162571.13' 'ENSG00000162571.13' 'ENSG00000162571.13' 'ENSG00000162571.13' 'ENSG00000162571.13' 'ENSG00000162571.13']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1281610. 1282010. 1282319. 1284090. 1285664. 1286278. 1286975. 1287299. 1287836. 1288037. 1290388. 1290555. 1290694. 1290953. 1291140. 1292029.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000162572.20' 'ENSG00000162572.20' 'ENSG00000162572.20' 'ENSG00000162572.20' 'ENSG00000162572.20' 'ENSG00000162572.20' 'ENSG00000162572.20' 'ENSG00000162572.20' 'ENSG00000162572.20' 'ENSG00000162572.20' 'ENSG00000162572.20' 'ENSG00000162572.20' 'ENSG00000162572.20' 'ENSG00000162572.20' 'ENSG00000162572.20']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1353946. 1354106. 1354509. 1355752. 1356704. 1358794. 1361777.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000162576.16' 'ENSG00000162576.16' 'ENSG00000162576.16' 'ENSG00000162576.16' 'ENSG00000162576.16' 'ENSG00000162576.16']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1331536. 1331938. 1332806. 1333124. 1333379. 1335306.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000169962.4' 'ENSG00000169962.4' 'ENSG00000169962.4' 'ENSG00000169962.4' 'ENSG00000169962.4']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1308720. 1308972. 1309851. 1311071. 1311677.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000169972.11' 'ENSG00000169972.11' 'ENSG00000169972.11' 'ENSG00000169972.11']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1373902. 1375495.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000175756.13']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1235041.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 818202. 819837.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000177757.2']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1435146. 1435821. 1437484. 1442882.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000179403.11' 'ENSG00000179403.11' 'ENSG00000179403.11']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1242646. 1243552. 1244275. 1244724. 1246722.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000184163.3' 'ENSG00000184163.3' 'ENSG00000184163.3' 'ENSG00000184163.3']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 65433. 65573. 71585.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000186092.6' 'ENSG00000186092.6']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1211832. 1212138. 1212704. 1213785. 1214138.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000186827.10' 'ENSG00000186827.10' 'ENSG00000186827.10' 'ENSG00000186827.10']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1203968. 1204236. 1204486. 1205680. 1206691.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000186891.13' 'ENSG00000186891.13' 'ENSG00000186891.13' 'ENSG00000186891.13']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 966614. 966803. 970423. 970601. 971006. 971208. 971523. 972150. 972424. 973010. 973326. 973640. 974051. 974364. 975108. 975865.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000187583.10' 'ENSG00000187583.10' 'ENSG00000187583.10' 'ENSG00000187583.10' 'ENSG00000187583.10' 'ENSG00000187583.10' 'ENSG00000187583.10' 'ENSG00000187583.10' 'ENSG00000187583.10' 'ENSG00000187583.10' 'ENSG00000187583.10' 'ENSG00000187583.10' 'ENSG00000187583.10' 'ENSG00000187583.10' 'ENSG00000187583.10']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1001281. 1008279. 1013576. 1014540.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000187608.9' 'ENSG00000187608.9' 'ENSG00000187608.9']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 924948. 925189. 925800. 926013. 930336. 931089. 935896. 939129. 939460. 940462. 941306. 943058. 943377. 944581.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000187634.11' 'ENSG00000187634.11' 'ENSG00000187634.11' 'ENSG00000187634.11' 'ENSG00000187634.11' 'ENSG00000187634.11' 'ENSG00000187634.11' 'ENSG00000187634.11' 'ENSG00000187634.11' 'ENSG00000187634.11' 'ENSG00000187634.11' 'ENSG00000187634.11' 'ENSG00000187634.11']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 976269. 976641. 981029. 981173. 982093.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000187642.9' 'ENSG00000187642.9' 'ENSG00000187642.9' 'ENSG00000187642.9']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 960800. 961750. 962478. 962917. 963253. 963504. 964008. 964180. 964530. 965715.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000187961.13' 'ENSG00000187961.13' 'ENSG00000187961.13' 'ENSG00000187961.13' 'ENSG00000187961.13' 'ENSG00000187961.13' 'ENSG00000187961.13' 'ENSG00000187961.13' 'ENSG00000187961.13']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1020373. 1022462. 1034703. 1035324. 1040880. 1041397. 1041702. 1042162. 1043457. 1043732. 1044023. 1044257. 1044439. 1045277. 1045523. 1045876. 1046088. 1046349. 1046735. 1046957. 1047454. 1047687. 1047895. 1048365. 1049059. 1049451. 1049795. 1050037. 1050329. 1050591. 1050837. 1051043. 1051369. 1051645. 1051815. 1053977. 1054551. 1056118.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 999432. 1000172.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000188290.10']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 944800. 945146. 945422. 945653. 946286. 947060. 948232. 948603. 951238. 952139. 952600. 953288. 953892. 954523. 956013. 956215. 957025. 959081. 959309.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000188976.10' 'ENSG00000188976.10' 'ENSG00000188976.10' 'ENSG00000188976.10' 'ENSG00000188976.10' 'ENSG00000188976.10' 'ENSG00000188976.10' 'ENSG00000188976.10' 'ENSG00000188976.10' 'ENSG00000188976.10' 'ENSG00000188976.10' 'ENSG00000188976.10' 'ENSG00000188976.10' 'ENSG00000188976.10' 'ENSG00000188976.10' 'ENSG00000188976.10' 'ENSG00000188976.10' 'ENSG00000188976.10']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1512473. 1516088. 1517412. 1517775. 1518990. 1520306. 1520617.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000197785.13' 'ENSG00000197785.13' 'ENSG00000197785.13' 'ENSG00000197785.13' 'ENSG00000197785.13' 'ENSG00000197785.13' 'ENSG00000197785.13']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 634922.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1169087.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1426385. 1427787.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000205116.3']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1176396. 1179555.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000205231.1']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1167952.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1167198.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1450758. 1452122. 1452434. 1454500. 1455519. 1455916. 1456349. 1457180. 1459231. 1460917. 1462708. 1470158.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000215915.9' 'ENSG00000215915.9' 'ENSG00000215915.9' 'ENSG00000215915.9' 'ENSG00000215915.9' 'ENSG00000215915.9' 'ENSG00000215915.9' 'ENSG00000215915.9' 'ENSG00000215915.9' 'ENSG00000215915.9' 'ENSG00000215915.9']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1059846. 1060393. 1061117. 1063201. 1063566. 1064401. 1064589. 1065475. 1066456. 1066667. 1067646. 1068003. 1068724. 1069355.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000217801.9' 'ENSG00000217801.9' 'ENSG00000217801.9' 'ENSG00000217801.9' 'ENSG00000217801.9' 'ENSG00000217801.9' 'ENSG00000217801.9' 'ENSG00000217801.9' 'ENSG00000217801.9' 'ENSG00000217801.9' 'ENSG00000217801.9' 'ENSG00000217801.9' 'ENSG00000217801.9']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1387582. 1387869. 1388743. 1388830. 1389047. 1389473. 1390371. 1390563. 1392803. 1393460. 1395537. 1398366. 1398956. 1399328.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000221978.11' 'ENSG00000221978.11' 'ENSG00000221978.11' 'ENSG00000221978.11' 'ENSG00000221978.11' 'ENSG00000221978.11' 'ENSG00000221978.11' 'ENSG00000221978.11' 'ENSG00000221978.11' 'ENSG00000221978.11' 'ENSG00000221978.11' 'ENSG00000221978.11' 'ENSG00000221978.11']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 157887.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 758336.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1379032.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 921016.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1137110. 1141032. 1144056.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000223823.1' 'ENSG00000223823.1']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 12227. 12721. 13052. 14409.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000223972.5' 'ENSG00000223972.5' 'ENSG00000223972.5']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1325102. 1325595. 1327032. 1328897.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000224051.6' 'ENSG00000224051.6' 'ENSG00000224051.6']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1402046.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1012190. 1013193.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000224969.1']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1430954. 1431843. 1434573.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000225285.1' 'ENSG00000225285.1']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 630683.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 827522.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1420564. 1422691.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000225905.1']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 629433.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 14501. 15038. 15947. 16765. 17055. 17368. 17742. 18061. 18366. 24891. 29570.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000227232.5' 'ENSG00000227232.5' 'ENSG00000227232.5' 'ENSG00000227232.5' 'ENSG00000227232.5' 'ENSG00000227232.5' 'ENSG00000227232.5' 'ENSG00000227232.5' 'ENSG00000227232.5' 'ENSG00000227232.5']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 729804. 733364. 735613. 743350. 744391. 744825. 746818. 756141. 759123. 765247. 766387. 768613. 769712. 773107. 774280. 778626.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000228327.3' 'ENSG00000228327.3' 'ENSG00000228327.3' 'ENSG00000228327.3' 'ENSG00000228327.3' 'ENSG00000228327.3' 'ENSG00000228327.3' 'ENSG00000228327.3' 'ENSG00000228327.3' 'ENSG00000228327.3' 'ENSG00000228327.3' 'ENSG00000228327.3' 'ENSG00000228327.3' 'ENSG00000228327.3' 'ENSG00000228327.3']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 259025. 261634. 268204. 268816. 289370. 297502. 357586. 358183. 359681.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000228463.10' 'ENSG00000228463.10' 'ENSG00000228463.10' 'ENSG00000228463.10' 'ENSG00000228463.10' 'ENSG00000228463.10' 'ENSG00000228463.10' 'ENSG00000228463.10']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 825552. 826923. 827775. 827853. 829104. 831677. 842020. 847806. 849602. 850351. 852515. 852766. 859446.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000228794.8' 'ENSG00000228794.8' 'ENSG00000228794.8' 'ENSG00000228794.8' 'ENSG00000228794.8' 'ENSG00000228794.8' 'ENSG00000228794.8' 'ENSG00000228794.8' 'ENSG00000228794.8' 'ENSG00000228794.8' 'ENSG00000228794.8' 'ENSG00000228794.8']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 633438.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 724360. 724903.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000229376.3']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 761154. 761989.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000229905.1']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 586358. 586955. 588453. 594756. 598551. 601577. 608056. 612864. 627823. 628223. 629006. 631204. 633129. 698959. 702340. 703789. 711922. 720206. 724564. 732212. 733064. 827796.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000230021.10' 'ENSG00000230021.10' 'ENSG00000230021.10' 'ENSG00000230021.10' 'ENSG00000230021.10' 'ENSG00000230021.10' 'ENSG00000230021.10' 'ENSG00000230021.10' 'ENSG00000230021.10' 'ENSG00000230021.10' 'ENSG00000230021.10' 'ENSG00000230021.10' 'ENSG00000230021.10' 'ENSG00000230021.10' 'ENSG00000230021.10' 'ENSG00000230021.10' 'ENSG00000230021.10' 'ENSG00000230021.10' 'ENSG00000230021.10' 'ENSG00000230021.10' 'ENSG00000230021.10']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 801163. 805891. 808623. 810170. 817712.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000230092.7' 'ENSG00000230092.7' 'ENSG00000230092.7' 'ENSG00000230092.7']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 868675. 869575. 870201. 875155. 876903.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000230368.2' 'ENSG00000230368.2' 'ENSG00000230368.2' 'ENSG00000230368.2']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1275299. 1279393. 1280420.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000230415.1' 'ENSG00000230415.1']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 911473. 914948.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000230699.2']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1008229.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 489387. 489906.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000233653.3']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 134836.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 874349.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1419549. 1420592. 1421769.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000235098.8' 'ENSG00000235098.8']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 587729. 594768.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000235146.2']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 358957. 360168. 366052.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000236601.2' 'ENSG00000236601.2']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 348366.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 365692. 366151. 368450. 373323. 379972. 476945. 485208. 489553. 494898. 495049. 495476. 496605. 497299. 498305. 499369. 501620. 502243. 502955. 505103. 514423. 517266. 522928.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000237094.12' 'ENSG00000237094.12' 'ENSG00000237094.12' 'ENSG00000237094.12' 'ENSG00000237094.12' 'ENSG00000237094.12' 'ENSG00000237094.12' 'ENSG00000237094.12' 'ENSG00000237094.12' 'ENSG00000237094.12' 'ENSG00000237094.12' 'ENSG00000237094.12' 'ENSG00000237094.12' 'ENSG00000237094.12' 'ENSG00000237094.12' 'ENSG00000237094.12' 'ENSG00000237094.12' 'ENSG00000237094.12' 'ENSG00000237094.12' 'ENSG00000237094.12' 'ENSG00000237094.12']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1072575. 1074307.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000237330.2']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 779092. 782191. 783363. 784977. 787672. 793041. 795582. 801876. 803667. 804222. 805270. 806459. 807465. 810060.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000237491.8' 'ENSG00000237491.8' 'ENSG00000237491.8' 'ENSG00000237491.8' 'ENSG00000237491.8' 'ENSG00000237491.8' 'ENSG00000237491.8' 'ENSG00000237491.8' 'ENSG00000237491.8' 'ENSG00000237491.8' 'ENSG00000237491.8' 'ENSG00000237491.8' 'ENSG00000237491.8']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 35174. 35481. 36081.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000237613.2' 'ENSG00000237613.2']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 632616.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 91629. 92240. 111357. 112804. 120932. 129223. 133723.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000238009.6' 'ENSG00000238009.6' 'ENSG00000238009.6' 'ENSG00000238009.6' 'ENSG00000238009.6' 'ENSG00000238009.6']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 139847. 140339.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000239906.1']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 90050. 91105.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000239945.1']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 57653. 58856. 64116.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000240361.2' 'ENSG00000240361.2']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 633741.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1317899. 1318689.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000240731.1']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 914444. 914971.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000241180.1']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 160690. 161525.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000241599.1']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 143011. 149707. 155831. 164791. 165942. 168165. 168767. 169264. 172688. 173862.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000241860.6' 'ENSG00000241860.6' 'ENSG00000241860.6' 'ENSG00000241860.6' 'ENSG00000241860.6' 'ENSG00000241860.6' 'ENSG00000241860.6' 'ENSG00000241860.6' 'ENSG00000241860.6']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1402601. 1407019. 1407313.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000242485.5' 'ENSG00000242485.5']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1055215. 1056116.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000242590.1']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 30039. 30667. 31109.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000243485.5' 'ENSG00000243485.5']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 634376.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 491989. 493241.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000250575.1']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1251334.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1405752.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 53312.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 675265.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 135895.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 440232.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 137965.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1170343.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 904957. 915976.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000272438.1']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1410618.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 998051.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1062808. 1063288.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000273443.1']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 187958.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1296170.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 17436.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 516479.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 632413.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 185350. 185559. 186469. 187287. 187577. 187890. 188266. 188584. 188902. 195411.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000279457.4' 'ENSG00000279457.4' 'ENSG00000279457.4' 'ENSG00000279457.4' 'ENSG00000279457.4' 'ENSG00000279457.4' 'ENSG00000279457.4' 'ENSG00000279457.4' 'ENSG00000279457.4']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 182746. 183216. 183571. 183901. 184174.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000279928.2' 'ENSG00000279928.2' 'ENSG00000279928.2' 'ENSG00000279928.2']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 874591. 875155. 875625. 876611. 877234.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000283040.1' 'ENSG00000283040.1' 'ENSG00000283040.1' 'ENSG00000283040.1']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1312566.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 30503.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1339708.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 686673.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 451697.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1503661. 1509452.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000284740.1']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 782050.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1098113. 1104598.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000285812.1']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_unary.py: 2000 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_unary.py:153: FutureWarning: A value is trying to be set on a copy of a DataFrame or Series through chained assignment using an inplace method. The behavior will change in pandas 3.0. This inplace method will never work because the intermediate object on which we are setting values always behaves as a copy. For example, when doing 'df[col].method(value, inplace=True)', try using 'df.method({col: value}, inplace=True)' or df[col] = df[col].method(value) instead, to perform the operation inplace on the original object. result_df.Cluster.replace(cluster_ids, inplace=True) .pybuild/cpython3_3.13_pyranges/build/tests/test_unary.py: 2000 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_unary.py:178: FutureWarning: The default of observed=False is deprecated and will be changed to True in a future version of pandas. Pass observed=False to retain current behavior or observed=True to adopt the future default and silence this warning. for _, gdf in natsorted(df.groupby(groupby)): -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html =============== 531 passed, 413715 warnings in 722.40s (0:12:02) =============== I: pybuild pybuild:308: mkdir -pv /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges && cp -av /build/reproducible-path/pyranges-0.0.111+ds/tests/*.bed /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests && cp -av /build/reproducible-path/pyranges-0.0.111+ds/tests/test_data /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests && cp -av /build/reproducible-path/pyranges-0.0.111+ds/tests/data /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests && cp -av /build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges '/build/reproducible-path/pyranges-0.0.111+ds/tests/chip_10.bed' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/chip_10.bed' '/build/reproducible-path/pyranges-0.0.111+ds/tests/f1.bed' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/f1.bed' '/build/reproducible-path/pyranges-0.0.111+ds/tests/f2.bed' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/f2.bed' '/build/reproducible-path/pyranges-0.0.111+ds/tests/test_data' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_data' '/build/reproducible-path/pyranges-0.0.111+ds/tests/test_data/test_sorted.bam' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_data/test_sorted.bam' '/build/reproducible-path/pyranges-0.0.111+ds/tests/test_data/test_sorted.bam.bai' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_data/test_sorted.bam.bai' '/build/reproducible-path/pyranges-0.0.111+ds/tests/test_data/ensembl.gtf' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_data/ensembl.gtf' '/build/reproducible-path/pyranges-0.0.111+ds/tests/test_data/gencode.gff3' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_data/gencode.gff3' '/build/reproducible-path/pyranges-0.0.111+ds/tests/test_data/ucsc_df_to_parse.txt' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_data/ucsc_df_to_parse.txt' '/build/reproducible-path/pyranges-0.0.111+ds/tests/data' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/data' '/build/reproducible-path/pyranges-0.0.111+ds/tests/data/test_data.py' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/data/test_data.py' '/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/control.bam' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/example_data/control.bam' '/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/control.bam.bai' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/example_data/control.bam.bai' '/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/exons.bed' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/example_data/exons.bed' '/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/ensembl.gtf' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/example_data/ensembl.gtf' '/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/ucsc_human.bed.gz' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/example_data/ucsc_human.bed.gz' '/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/chipseq_background.bed' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/example_data/chipseq_background.bed' '/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/f2.bed' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/example_data/f2.bed' '/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/bw.bw' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/example_data/bw.bw' '/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/f1.bed' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/example_data/f1.bed' '/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/cpg.bed' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/example_data/cpg.bed' '/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/lamina.bed' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/example_data/lamina.bed' '/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/gencode_human.gtf.gz' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/example_data/gencode_human.gtf.gz' '/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/chipseq.bed' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/example_data/chipseq.bed' '/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/aorta.bed' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/example_data/aorta.bed' '/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/ensembl_human.gtf.gz' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/example_data/ensembl_human.gtf.gz' '/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/chromsizes.bed' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/example_data/chromsizes.bed' '/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/aorta2.bed' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/example_data/aorta2.bed' I: pybuild base:311: cd /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build; python3.12 -m pytest -v -n 42 ============================= test session starts ============================== platform linux -- Python 3.12.8, pytest-8.3.4, pluggy-1.5.0 -- /usr/bin/python3.12 cachedir: .pytest_cache hypothesis profile 'default' -> database=DirectoryBasedExampleDatabase(PosixPath('/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/.hypothesis/examples')) rootdir: /build/reproducible-path/pyranges-0.0.111+ds plugins: hypothesis-6.122.1, typeguard-4.4.1, xdist-3.6.1 created: 42/42 workers 42 workers [531 items] scheduling tests via LoadScheduling tests/data/test_data.py::test_all_data tests/test_binary.py::test_overlap[same] tests/test_binary.py::test_set_union[False] tests/test_binary.py::test_nearest[None-False-same] tests/test_binary.py::test_intersect[same] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain58-method_chain58] tests/test_binary.py::test_nearest[downstream-False-same] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain43-method_chain43] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain34-method_chain34] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain28-method_chain28] tests/test_binary.py::test_nearest[downstream-True-same] tests/test_binary.py::test_nearest[upstream-False-same] tests/test_binary.py::test_k_nearest[upstream-True-same-last] tests/test_binary.py::test_join[opposite] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain13-method_chain13] tests/test_binary.py::test_nearest[upstream-True-same] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain25-method_chain25] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain52-method_chain52] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain37-method_chain37] tests/test_change_chromosome_custom.py::test_change_chromosomes tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain22-method_chain22] tests/test_binary.py::test_k_nearest[None-False-same-last] tests/test_binary.py::test_coverage[same] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain4-method_chain4] tests/test_binary.py::test_subtraction[opposite] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain40-method_chain40] tests/test_binary.py::test_k_nearest[downstream-False-same-last] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain19-method_chain19] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain10-method_chain10] tests/test_binary.py::test_k_nearest[upstream-False-same-last] tests/test_concat.py::test_concat_unstranded_stranded tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain16-method_chain16] tests/test_binary.py::test_k_nearest[None-True-same-last] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain1-method_chain1] tests/test_binary.py::test_nearest[None-True-same] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain46-method_chain46] tests/test_binary.py::test_k_nearest[downstream-True-same-last] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain49-method_chain49] tests/test_binary.py::test_jaccard[same] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain7-method_chain7] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain31-method_chain31] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain55-method_chain55] [gw20] [ 0%] PASSED tests/test_change_chromosome_custom.py::test_change_chromosomes tests/test_concat.py::test_concat_stranded_unstranded [gw21] [ 0%] PASSED tests/test_concat.py::test_concat_unstranded_stranded tests/test_count_overlaps.py::test_strand_vs_strand_same [gw20] [ 0%] PASSED tests/test_concat.py::test_concat_stranded_unstranded tests/test_concat.py::test_concat_unstranded_unstranded [gw20] [ 0%] PASSED tests/test_concat.py::test_concat_unstranded_unstranded tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain61-method_chain61] [gw21] [ 0%] PASSED tests/test_count_overlaps.py::test_strand_vs_strand_same tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain0-method_chain0] [gw0] [ 1%] PASSED tests/data/test_data.py::test_all_data tests/test_binary.py::test_set_intersect[False] [gw33] [ 1%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain31-method_chain31] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain32-method_chain32] [gw27] [ 1%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain16-method_chain16] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain17-method_chain17] [gw32] [ 1%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain34-method_chain34] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain35-method_chain35] [gw30] [ 1%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain25-method_chain25] [gw37] [ 2%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain43-method_chain43] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain44-method_chain44] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain26-method_chain26] [gw34] [ 2%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain46-method_chain46] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain47-method_chain47] [gw29] [ 2%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain22-method_chain22] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain23-method_chain23] [gw31] [ 2%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain28-method_chain28] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain29-method_chain29] [gw20] [ 2%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain61-method_chain61] [gw28] [ 3%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain19-method_chain19] [gw41] [ 3%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain58-method_chain58] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain20-method_chain20] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain59-method_chain59] [gw26] [ 3%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain13-method_chain13] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain62-method_chain62] [gw23] [ 3%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain4-method_chain4] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain14-method_chain14] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain5-method_chain5] [gw25] [ 3%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain10-method_chain10] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain11-method_chain11] [gw40] [ 3%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain55-method_chain55] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain56-method_chain56] [gw24] [ 4%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain7-method_chain7] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain8-method_chain8] [gw35] [ 4%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain37-method_chain37] [gw39] [ 4%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain52-method_chain52] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain38-method_chain38] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain53-method_chain53] [gw22] [ 4%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain1-method_chain1] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain2-method_chain2] [gw38] [ 4%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain49-method_chain49] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain50-method_chain50] [gw21] [ 5%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain0-method_chain0] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain64-method_chain64] [gw27] [ 5%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain17-method_chain17] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain18-method_chain18] [gw33] [ 5%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain32-method_chain32] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain33-method_chain33] [gw36] [ 5%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain40-method_chain40] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain41-method_chain41] [gw37] [ 5%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain44-method_chain44] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain45-method_chain45] [gw34] [ 6%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain47-method_chain47] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain48-method_chain48] [gw28] [ 6%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain20-method_chain20] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain21-method_chain21] [gw31] [ 6%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain29-method_chain29] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain30-method_chain30] [gw29] [ 6%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain23-method_chain23] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain24-method_chain24] [gw30] [ 6%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain26-method_chain26] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain27-method_chain27] [gw20] [ 6%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain62-method_chain62] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain63-method_chain63] [gw41] [ 7%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain59-method_chain59] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain60-method_chain60] [gw25] [ 7%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain11-method_chain11] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain12-method_chain12] [gw26] [ 7%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain14-method_chain14] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain15-method_chain15] [gw40] [ 7%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain56-method_chain56] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain57-method_chain57] [gw32] [ 7%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain35-method_chain35] [gw24] [ 8%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain8-method_chain8] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain9-method_chain9] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain36-method_chain36] [gw39] [ 8%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain53-method_chain53] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain54-method_chain54] [gw21] [ 8%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain64-method_chain64] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain65-method_chain65] [gw27] [ 8%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain18-method_chain18] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain67-method_chain67] [gw33] [ 8%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain33-method_chain33] [gw22] [ 9%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain2-method_chain2] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain70-method_chain70] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain3-method_chain3] [gw37] [ 9%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain45-method_chain45] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain73-method_chain73] [gw23] [ 9%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain5-method_chain5] [gw35] [ 9%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain38-method_chain38] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain6-method_chain6] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain39-method_chain39] [gw31] [ 9%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain30-method_chain30] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain82-method_chain82] [gw30] [ 9%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain27-method_chain27] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain88-method_chain88] [gw34] [ 10%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain48-method_chain48] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain76-method_chain76] [gw36] [ 10%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain41-method_chain41] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain42-method_chain42] [gw29] [ 10%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain24-method_chain24] [gw38] [ 10%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain50-method_chain50] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain51-method_chain51] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain85-method_chain85] [gw28] [ 10%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain21-method_chain21] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain79-method_chain79] [gw20] [ 11%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain63-method_chain63] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain91-method_chain91] [gw26] [ 11%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain15-method_chain15] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain100-method_chain100] [gw41] [ 11%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain60-method_chain60] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain94-method_chain94] [gw21] [ 11%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain65-method_chain65] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain66-method_chain66] [gw25] [ 11%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain12-method_chain12] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain97-method_chain97] [gw27] [ 12%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain67-method_chain67] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain68-method_chain68] [gw40] [ 12%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain57-method_chain57] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain103-method_chain103] [gw24] [ 12%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain9-method_chain9] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain106-method_chain106] [gw37] [ 12%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain73-method_chain73] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain74-method_chain74] [gw33] [ 12%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain70-method_chain70] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain71-method_chain71] [gw34] [ 12%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain76-method_chain76] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain77-method_chain77] [gw32] [ 13%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain36-method_chain36] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain109-method_chain109] [gw28] [ 13%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain79-method_chain79] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain80-method_chain80] [gw39] [ 13%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain54-method_chain54] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain112-method_chain112] [gw31] [ 13%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain82-method_chain82] [gw35] [ 13%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain39-method_chain39] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain83-method_chain83] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain121-method_chain121] [gw38] [ 14%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain51-method_chain51] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain127-method_chain127] [gw22] [ 14%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain3-method_chain3] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain115-method_chain115] [gw23] [ 14%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain6-method_chain6] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain118-method_chain118] [gw20] [ 14%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain91-method_chain91] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain92-method_chain92] [gw36] [ 14%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain42-method_chain42] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain124-method_chain124] [gw41] [ 15%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain94-method_chain94] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain95-method_chain95] [gw30] [ 15%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain88-method_chain88] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain89-method_chain89] [gw21] [ 15%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain66-method_chain66] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain130-method_chain130] [gw26] [ 15%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain100-method_chain100] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain101-method_chain101] [gw25] [ 15%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain97-method_chain97] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain98-method_chain98] [gw27] [ 16%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain68-method_chain68] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain69-method_chain69] [gw37] [ 16%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain74-method_chain74] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain75-method_chain75] [gw33] [ 16%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain71-method_chain71] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain72-method_chain72] [gw29] [ 16%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain85-method_chain85] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain86-method_chain86] [gw24] [ 16%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain106-method_chain106] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain107-method_chain107] [gw22] [ 16%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain115-method_chain115] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain116-method_chain116] [gw34] [ 17%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain77-method_chain77] [gw28] [ 17%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain80-method_chain80] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain78-method_chain78] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain81-method_chain81] [gw38] [ 17%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain127-method_chain127] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain128-method_chain128] [gw31] [ 17%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain83-method_chain83] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain84-method_chain84] [gw35] [ 17%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain121-method_chain121] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain122-method_chain122] [gw23] [ 18%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain118-method_chain118] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain119-method_chain119] [gw41] [ 18%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain95-method_chain95] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain96-method_chain96] [gw20] [ 18%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain92-method_chain92] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain93-method_chain93] [gw32] [ 18%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain109-method_chain109] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain110-method_chain110] [gw40] [ 18%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain103-method_chain103] [gw39] [ 19%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain112-method_chain112] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain104-method_chain104] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain113-method_chain113] [gw21] [ 19%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain130-method_chain130] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain131-method_chain131] [gw27] [ 19%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain69-method_chain69] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain133-method_chain133] [gw26] [ 19%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain101-method_chain101] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain102-method_chain102] [gw36] [ 19%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain124-method_chain124] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain125-method_chain125] [gw33] [ 19%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain72-method_chain72] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain137-method_chain137] [gw37] [ 20%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain75-method_chain75] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain135-method_chain135] [gw22] [ 20%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain116-method_chain116] [gw24] [ 20%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain107-method_chain107] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain117-method_chain117] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain108-method_chain108] [gw28] [ 20%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain81-method_chain81] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain141-method_chain141] [gw38] [ 20%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain128-method_chain128] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain129-method_chain129] [gw30] [ 21%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain89-method_chain89] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain90-method_chain90] [gw34] [ 21%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain78-method_chain78] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain139-method_chain139] [gw29] [ 21%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain86-method_chain86] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain87-method_chain87] [gw20] [ 21%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain93-method_chain93] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain147-method_chain147] [gw35] [ 21%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain122-method_chain122] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain123-method_chain123] [gw41] [ 22%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain96-method_chain96] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain145-method_chain145] [gw21] [ 22%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain131-method_chain131] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain132-method_chain132] [gw25] [ 22%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain98-method_chain98] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain99-method_chain99] [gw39] [ 22%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain113-method_chain113] [gw32] [ 22%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain110-method_chain110] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain111-method_chain111] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain114-method_chain114] [gw23] [ 22%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain119-method_chain119] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain120-method_chain120] [gw40] [ 23%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain104-method_chain104] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain105-method_chain105] [gw36] [ 23%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain125-method_chain125] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain126-method_chain126] [gw26] [ 23%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain102-method_chain102] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain149-method_chain149] [gw31] [ 23%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain84-method_chain84] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain143-method_chain143] [gw28] [ 23%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain141-method_chain141] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain142-method_chain142] [gw38] [ 24%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain129-method_chain129] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain155-method_chain155] [gw33] [ 24%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain137-method_chain137] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain138-method_chain138] [gw35] [ 24%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain123-method_chain123] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain161-method_chain161] [gw22] [ 24%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain117-method_chain117] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain151-method_chain151] [gw24] [ 24%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain108-method_chain108] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain153-method_chain153] [gw27] [ 25%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain133-method_chain133] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain134-method_chain134] [gw41] [ 25%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain145-method_chain145] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain146-method_chain146] [gw37] [ 25%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain135-method_chain135] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain136-method_chain136] [gw21] [ 25%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain132-method_chain132] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain163-method_chain163] [gw39] [ 25%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain114-method_chain114] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain169-method_chain169] [gw30] [ 25%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain90-method_chain90] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain157-method_chain157] [gw32] [ 26%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain111-method_chain111] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain167-method_chain167] [gw34] [ 26%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain139-method_chain139] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain140-method_chain140] [gw29] [ 26%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain87-method_chain87] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain159-method_chain159] [gw23] [ 26%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain120-method_chain120] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain171-method_chain171] [gw31] [ 26%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain143-method_chain143] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain144-method_chain144] [gw25] [ 27%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain99-method_chain99] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain165-method_chain165] [gw28] [ 27%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain142-method_chain142] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain177-method_chain177] [gw36] [ 27%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain126-method_chain126] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain175-method_chain175] [gw40] [ 27%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain105-method_chain105] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain173-method_chain173] [gw38] [ 27%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain155-method_chain155] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain156-method_chain156] [gw26] [ 28%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain149-method_chain149] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain150-method_chain150] [gw21] [ 28%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain163-method_chain163] [gw20] [ 28%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain147-method_chain147] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain164-method_chain164] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain148-method_chain148] [gw41] [ 28%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain146-method_chain146] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain183-method_chain183] [gw35] [ 28%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain161-method_chain161] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain162-method_chain162] [gw39] [ 29%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain169-method_chain169] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain170-method_chain170] [gw32] [ 29%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain167-method_chain167] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain168-method_chain168] [gw22] [ 29%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain151-method_chain151] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain152-method_chain152] [gw24] [ 29%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain153-method_chain153] [gw30] [ 29%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain157-method_chain157] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain154-method_chain154] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain158-method_chain158] [gw37] [ 29%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain136-method_chain136] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain185-method_chain185] [gw31] [ 30%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain144-method_chain144] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain189-method_chain189] [gw27] [ 30%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain134-method_chain134] [gw33] [ 30%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain138-method_chain138] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain179-method_chain179] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain181-method_chain181] [gw25] [ 30%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain165-method_chain165] [gw23] [ 30%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain171-method_chain171] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain166-method_chain166] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain172-method_chain172] [gw34] [ 31%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain140-method_chain140] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain187-method_chain187] [gw28] [ 31%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain177-method_chain177] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain178-method_chain178] [gw29] [ 31%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain159-method_chain159] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain160-method_chain160] [gw21] [ 31%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain164-method_chain164] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain195-method_chain195] [gw40] [ 31%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain173-method_chain173] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain174-method_chain174] [gw38] [ 32%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain156-method_chain156] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain191-method_chain191] [gw36] [ 32%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain175-method_chain175] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain176-method_chain176] [gw39] [ 32%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain170-method_chain170] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain201-method_chain201] [gw3] [ 32%] PASSED tests/test_binary.py::test_intersect[same] tests/test_binary.py::test_intersect[opposite] [gw35] [ 32%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain162-method_chain162] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain199-method_chain199] [gw13] [ 32%] PASSED tests/test_binary.py::test_join[opposite] tests/test_binary.py::test_reldist [gw41] [ 33%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain183-method_chain183] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain184-method_chain184] [gw32] [ 33%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain168-method_chain168] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain203-method_chain203] [gw33] [ 33%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain179-method_chain179] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain180-method_chain180] [gw2] [ 33%] PASSED tests/test_binary.py::test_overlap[same] [gw26] [ 33%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain150-method_chain150] [gw27] [ 34%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain181-method_chain181] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain193-method_chain193] tests/test_binary.py::test_overlap[opposite] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain182-method_chain182] [gw25] [ 34%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain166-method_chain166] [gw23] [ 34%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain172-method_chain172] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain211-method_chain211] [gw30] [ 34%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain158-method_chain158] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain213-method_chain213] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain209-method_chain209] [gw28] [ 34%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain178-method_chain178] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain215-method_chain215] [gw31] [ 35%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain189-method_chain189] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain190-method_chain190] [gw20] [ 35%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain148-method_chain148] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain197-method_chain197] [gw24] [ 35%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain154-method_chain154] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain207-method_chain207] [gw29] [ 35%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain160-method_chain160] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain216-method_chain216] [gw21] [ 35%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain195-method_chain195] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain196-method_chain196] [gw38] [ 35%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain191-method_chain191] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain192-method_chain192] [gw40] [ 36%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain174-method_chain174] [gw37] [ 36%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain185-method_chain185] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain217-method_chain217] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain186-method_chain186] [gw12] [ 36%] PASSED tests/test_binary.py::test_jaccard[same] tests/test_binary.py::test_join[False] [gw36] [ 36%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain176-method_chain176] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain218-method_chain218] [gw34] [ 36%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain187-method_chain187] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain188-method_chain188] [gw22] [ 37%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain152-method_chain152] [gw26] [ 37%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain193-method_chain193] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain194-method_chain194] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain205-method_chain205] [gw33] [ 37%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain180-method_chain180] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain220-method_chain220] [gw23] [ 37%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain213-method_chain213] [gw9] [ 37%] PASSED tests/test_binary.py::test_nearest[upstream-False-same] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain214-method_chain214] [gw25] [ 38%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain211-method_chain211] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain212-method_chain212] tests/test_binary.py::test_nearest[upstream-False-opposite] [gw32] [ 38%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain203-method_chain203] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain204-method_chain204] [gw31] [ 38%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain190-method_chain190] [gw28] [ 38%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain215-method_chain215] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain223-method_chain223] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain222-method_chain222] [gw30] [ 38%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain209-method_chain209] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain210-method_chain210] [gw11] [ 38%] PASSED tests/test_binary.py::test_nearest[downstream-False-same] [gw24] [ 39%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain207-method_chain207] [gw29] [ 39%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain216-method_chain216] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain224-method_chain224] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain208-method_chain208] tests/test_binary.py::test_nearest[downstream-False-opposite] [gw39] [ 39%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain201-method_chain201] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain202-method_chain202] [gw41] [ 39%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain184-method_chain184] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain219-method_chain219] [gw38] [ 39%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain192-method_chain192] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain226-method_chain226] [gw40] [ 40%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain217-method_chain217] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain227-method_chain227] [gw35] [ 40%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain199-method_chain199] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain200-method_chain200] [gw36] [ 40%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain218-method_chain218] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain229-method_chain229] [gw25] [ 40%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain212-method_chain212] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain234-method_chain234] [gw33] [ 40%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain220-method_chain220] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain232-method_chain232] [gw7] [ 41%] PASSED tests/test_binary.py::test_nearest[None-False-same] [gw0] [ 41%] PASSED tests/test_binary.py::test_set_intersect[False] tests/test_binary.py::test_nearest[None-False-opposite] tests/test_binary.py::test_set_intersect[same] [gw27] [ 41%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain182-method_chain182] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain221-method_chain221] [gw20] [ 41%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain197-method_chain197] [gw26] [ 41%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain194-method_chain194] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain198-method_chain198] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain231-method_chain231] [gw37] [ 41%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain186-method_chain186] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain228-method_chain228] [gw23] [ 42%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain214-method_chain214] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain233-method_chain233] [gw21] [ 42%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain196-method_chain196] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain225-method_chain225] [gw22] [ 42%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain205-method_chain205] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain206-method_chain206] [gw31] [ 42%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain223-method_chain223] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain236-method_chain236] [gw8] [ 42%] PASSED tests/test_binary.py::test_nearest[upstream-True-same] tests/test_binary.py::test_nearest[upstream-True-opposite] [gw34] [ 43%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain188-method_chain188] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain230-method_chain230] [gw32] [ 43%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain204-method_chain204] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain235-method_chain235] [gw29] [ 43%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain224-method_chain224] [gw28] [ 43%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain222-method_chain222] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain240-method_chain240] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain237-method_chain237] [gw30] [ 43%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain210-method_chain210] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain238-method_chain238] [gw40] [ 44%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain227-method_chain227] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain244-method_chain244] [gw38] [ 44%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain226-method_chain226] [gw41] [ 44%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain219-method_chain219] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain243-method_chain243] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain242-method_chain242] [gw24] [ 44%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain208-method_chain208] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain239-method_chain239] [gw36] [ 44%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain229-method_chain229] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain246-method_chain246] [gw39] [ 45%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain202-method_chain202] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain241-method_chain241] [gw37] [ 45%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain228-method_chain228] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain253-method_chain253] [gw35] [ 45%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain200-method_chain200] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain245-method_chain245] [gw21] [ 45%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain225-method_chain225] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain255-method_chain255] [gw27] [ 45%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain221-method_chain221] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain250-method_chain250] [gw22] [ 45%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain206-method_chain206] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain256-method_chain256] [gw10] [ 46%] PASSED tests/test_binary.py::test_nearest[downstream-True-same] tests/test_binary.py::test_nearest[downstream-True-opposite] [gw34] [ 46%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain230-method_chain230] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain258-method_chain258] [gw29] [ 46%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain240-method_chain240] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain260-method_chain260] [gw41] [ 46%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain242-method_chain242] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain265-method_chain265] [gw40] [ 46%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain244-method_chain244] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain263-method_chain263] [gw23] [ 47%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain233-method_chain233] [gw33] [ 47%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain232-method_chain232] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain254-method_chain254] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain248-method_chain248] [gw25] [ 47%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain234-method_chain234] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain247-method_chain247] [gw20] [ 47%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain198-method_chain198] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain251-method_chain251] [gw6] [ 47%] PASSED tests/test_binary.py::test_nearest[None-True-same] [gw30] [ 48%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain238-method_chain238] [gw24] [ 48%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain239-method_chain239] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain262-method_chain262] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain266-method_chain266] tests/test_binary.py::test_nearest[None-True-opposite] [gw38] [ 48%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain243-method_chain243] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain264-method_chain264] [gw32] [ 48%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain235-method_chain235] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain259-method_chain259] [gw26] [ 48%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain231-method_chain231] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain252-method_chain252] [gw39] [ 48%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain241-method_chain241] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain268-method_chain268] [gw14] [ 49%] PASSED tests/test_binary.py::test_k_nearest[downstream-False-same-last] tests/test_binary.py::test_k_nearest[downstream-False-False-last] [gw31] [ 49%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain236-method_chain236] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain257-method_chain257] [gw16] [ 49%] PASSED tests/test_binary.py::test_k_nearest[upstream-False-same-last] tests/test_binary.py::test_k_nearest[upstream-False-False-last] [gw28] [ 49%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain237-method_chain237] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain261-method_chain261] [gw37] [ 49%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain253-method_chain253] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain269-method_chain269] [gw21] [ 50%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain255-method_chain255] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain271-method_chain271] [gw41] [ 50%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain265-method_chain265] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain276-method_chain276] [gw40] [ 50%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain263-method_chain263] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain277-method_chain277] [gw22] [ 50%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain256-method_chain256] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain273-method_chain273] [gw29] [ 50%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain260-method_chain260] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain275-method_chain275] [gw36] [ 51%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain246-method_chain246] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain267-method_chain267] [gw34] [ 51%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain258-method_chain258] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain274-method_chain274] [gw30] [ 51%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain262-method_chain262] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain282-method_chain282] [gw23] [ 51%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain254-method_chain254] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain278-method_chain278] [gw38] [ 51%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain264-method_chain264] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain284-method_chain284] [gw39] [ 51%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain268-method_chain268] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain287-method_chain287] [gw25] [ 52%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain247-method_chain247] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain280-method_chain280] [gw24] [ 52%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain266-method_chain266] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain283-method_chain283] [gw28] [ 52%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain261-method_chain261] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain289-method_chain289] [gw32] [ 52%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain259-method_chain259] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain285-method_chain285] [gw33] [ 52%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain248-method_chain248] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain279-method_chain279] [gw35] [ 53%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain245-method_chain245] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain270-method_chain270] [gw31] [ 53%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain257-method_chain257] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain288-method_chain288] [gw1] [ 53%] PASSED tests/test_binary.py::test_set_union[False] [gw29] [ 53%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain275-method_chain275] [gw40] [ 53%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain277-method_chain277] [gw20] [ 54%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain251-method_chain251] [gw26] [ 54%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain252-method_chain252] [gw41] [ 54%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain276-method_chain276] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain295-method_chain295] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain293-method_chain293] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain281-method_chain281] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain292-method_chain292] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain286-method_chain286] tests/test_binary.py::test_set_union[same] [gw37] [ 54%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain269-method_chain269] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain290-method_chain290] [gw34] [ 54%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain274-method_chain274] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain297-method_chain297] [gw21] [ 54%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain271-method_chain271] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain291-method_chain291] [gw27] [ 55%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain250-method_chain250] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain272-method_chain272] [gw36] [ 55%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain267-method_chain267] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain296-method_chain296] [gw22] [ 55%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain273-method_chain273] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain294-method_chain294] [gw23] [ 55%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain278-method_chain278] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain299-method_chain299] [gw28] [ 55%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain289-method_chain289] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain304-method_chain304] [gw33] [ 56%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain279-method_chain279] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain306-method_chain306] [gw30] [ 56%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain282-method_chain282] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain298-method_chain298] [gw31] [ 56%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain288-method_chain288] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain308-method_chain308] [gw35] [ 56%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain270-method_chain270] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain307-method_chain307] [gw38] [ 56%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain284-method_chain284] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain300-method_chain300] [gw39] [ 57%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain287-method_chain287] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain301-method_chain301] [gw18] [ 57%] PASSED tests/test_binary.py::test_k_nearest[None-False-same-last] tests/test_binary.py::test_k_nearest[None-False-False-last] [gw4] [ 57%] PASSED tests/test_binary.py::test_coverage[same] [gw37] [ 57%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain290-method_chain290] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain314-method_chain314] [gw41] [ 57%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain292-method_chain292] [gw40] [ 58%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain293-method_chain293] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain312-method_chain312] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain310-method_chain310] tests/test_binary.py::test_coverage[opposite] [gw21] [ 58%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain291-method_chain291] [gw24] [ 58%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain283-method_chain283] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain303-method_chain303] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain316-method_chain316] [gw27] [ 58%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain272-method_chain272] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain317-method_chain317] [gw26] [ 58%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain286-method_chain286] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain313-method_chain313] [gw32] [ 58%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain285-method_chain285] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain305-method_chain305] [gw36] [ 59%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain296-method_chain296] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain318-method_chain318] [gw25] [ 59%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain280-method_chain280] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain302-method_chain302] [gw20] [ 59%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain281-method_chain281] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain311-method_chain311] [gw29] [ 59%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain295-method_chain295] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain309-method_chain309] [gw34] [ 59%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain297-method_chain297] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain315-method_chain315] [gw28] [ 60%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain304-method_chain304] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain321-method_chain321] [gw23] [ 60%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain299-method_chain299] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain320-method_chain320] [gw35] [ 60%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain307-method_chain307] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain325-method_chain325] [gw37] [ 60%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain314-method_chain314] [gw33] [ 60%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain306-method_chain306] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain322-method_chain322] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain328-method_chain328] [gw15] [ 61%] PASSED tests/test_binary.py::test_k_nearest[downstream-True-same-last] [gw40] [ 61%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain310-method_chain310] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain330-method_chain330] tests/test_binary.py::test_k_nearest[downstream-True-False-last] [gw31] [ 61%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain308-method_chain308] [gw41] [ 61%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain312-method_chain312] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain324-method_chain324] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain329-method_chain329] [gw21] [ 61%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain316-method_chain316] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain332-method_chain332] [gw30] [ 61%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain298-method_chain298] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain323-method_chain323] [gw5] [ 62%] PASSED tests/test_binary.py::test_subtraction[opposite] tests/test_binary.py::test_subtraction[False] [gw22] [ 62%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain294-method_chain294] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain319-method_chain319] [gw39] [ 62%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain301-method_chain301] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain327-method_chain327] [gw24] [ 62%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain303-method_chain303] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain331-method_chain331] [gw38] [ 62%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain300-method_chain300] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain326-method_chain326] [gw27] [ 63%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain317-method_chain317] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain333-method_chain333] [gw17] [ 63%] PASSED tests/test_binary.py::test_k_nearest[upstream-True-same-last] tests/test_binary.py::test_k_nearest[upstream-True-False-last] [gw36] [ 63%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain318-method_chain318] [gw26] [ 63%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain313-method_chain313] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain336-method_chain336] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain334-method_chain334] [gw32] [ 63%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain305-method_chain305] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain335-method_chain335] [gw20] [ 64%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain311-method_chain311] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain338-method_chain338] [gw25] [ 64%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain302-method_chain302] [gw29] [ 64%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain309-method_chain309] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain337-method_chain337] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain339-method_chain339] [gw28] [ 64%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain321-method_chain321] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain341-method_chain341] [gw35] [ 64%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain325-method_chain325] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain343-method_chain343] [gw37] [ 64%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain328-method_chain328] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain345-method_chain345] [gw31] [ 65%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain324-method_chain324] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain347-method_chain347] [gw30] [ 65%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain323-method_chain323] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain350-method_chain350] [gw33] [ 65%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain322-method_chain322] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain344-method_chain344] [gw23] [ 65%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain320-method_chain320] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain342-method_chain342] [gw38] [ 65%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain326-method_chain326] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain354-method_chain354] [gw34] [ 66%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain315-method_chain315] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain340-method_chain340] [gw22] [ 66%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain319-method_chain319] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain351-method_chain351] [gw40] [ 66%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain330-method_chain330] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain346-method_chain346] [gw39] [ 66%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain327-method_chain327] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain352-method_chain352] [gw21] [ 66%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain332-method_chain332] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain349-method_chain349] [gw24] [ 67%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain331-method_chain331] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain353-method_chain353] [gw29] [ 67%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain339-method_chain339] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain361-method_chain361] [gw41] [ 67%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain329-method_chain329] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain348-method_chain348] [gw25] [ 67%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain337-method_chain337] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain360-method_chain360] [gw27] [ 67%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain333-method_chain333] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain355-method_chain355] [gw36] [ 67%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain336-method_chain336] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain356-method_chain356] [gw20] [ 68%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain338-method_chain338] [gw13] [ 68%] PASSED tests/test_binary.py::test_reldist tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain359-method_chain359] tests/test_binary.py::test_k_nearest[downstream-False-opposite-last] [gw28] [ 68%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain341-method_chain341] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain362-method_chain362] [gw37] [ 68%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain345-method_chain345] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain364-method_chain364] [gw3] [ 68%] PASSED tests/test_binary.py::test_intersect[opposite] tests/test_binary.py::test_coverage[False] [gw19] [ 69%] PASSED tests/test_binary.py::test_k_nearest[None-True-same-last] tests/test_binary.py::test_k_nearest[None-True-False-last] [gw23] [ 69%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain342-method_chain342] [gw38] [ 69%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain354-method_chain354] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain368-method_chain368] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain369-method_chain369] [gw34] [ 69%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain340-method_chain340] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain370-method_chain370] [gw32] [ 69%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain335-method_chain335] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain358-method_chain358] [gw31] [ 70%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain347-method_chain347] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain365-method_chain365] [gw26] [ 70%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain334-method_chain334] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain357-method_chain357] [gw22] [ 70%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain351-method_chain351] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain371-method_chain371] [gw2] [ 70%] PASSED tests/test_binary.py::test_overlap[opposite] tests/test_binary.py::test_intersect[False] [gw30] [ 70%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain350-method_chain350] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain366-method_chain366] [gw35] [ 70%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain343-method_chain343] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain363-method_chain363] [gw29] [ 71%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain361-method_chain361] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain376-method_chain376] [gw25] [ 71%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain360-method_chain360] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain378-method_chain378] [gw39] [ 71%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain352-method_chain352] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain373-method_chain373] [gw33] [ 71%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain344-method_chain344] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain367-method_chain367] [gw21] [ 71%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain349-method_chain349] [gw20] [ 72%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain359-method_chain359] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain381-method_chain381] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain374-method_chain374] [gw24] [ 72%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain353-method_chain353] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain375-method_chain375] [gw36] [ 72%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain356-method_chain356] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain380-method_chain380] [gw40] [ 72%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain346-method_chain346] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain372-method_chain372] [gw28] [ 72%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain362-method_chain362] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain383-method_chain383] [gw27] [ 73%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain355-method_chain355] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain379-method_chain379] [gw23] [ 73%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain368-method_chain368] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain386-method_chain386] [gw34] [ 73%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain370-method_chain370] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain388-method_chain388] [gw32] [ 73%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain358-method_chain358] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain389-method_chain389] [gw38] [ 73%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain369-method_chain369] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain387-method_chain387] [gw37] [ 74%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain364-method_chain364] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain384-method_chain384] [gw31] [ 74%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain365-method_chain365] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain390-method_chain390] [gw26] [ 74%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain357-method_chain357] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain391-method_chain391] [gw30] [ 74%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain366-method_chain366] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain394-method_chain394] [gw22] [ 74%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain371-method_chain371] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain392-method_chain392] [gw35] [ 74%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain363-method_chain363] [gw39] [ 75%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain373-method_chain373] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain395-method_chain395] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain398-method_chain398] [gw41] [ 75%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain348-method_chain348] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain377-method_chain377] [gw33] [ 75%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain367-method_chain367] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain399-method_chain399] [gw24] [ 75%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain375-method_chain375] [gw21] [ 75%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain374-method_chain374] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain402-method_chain402] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain401-method_chain401] [gw29] [ 76%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain376-method_chain376] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain396-method_chain396] [gw40] [ 76%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain372-method_chain372] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain404-method_chain404] [gw36] [ 76%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain380-method_chain380] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain403-method_chain403] [gw23] [ 76%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain386-method_chain386] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain407-method_chain407] [gw32] [ 76%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain389-method_chain389] [gw34] [ 77%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain388-method_chain388] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain409-method_chain409] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain408-method_chain408] [gw26] [ 77%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain391-method_chain391] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain413-method_chain413] [gw20] [ 77%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain381-method_chain381] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain400-method_chain400] [gw38] [ 77%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain387-method_chain387] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain410-method_chain410] [gw25] [ 77%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain378-method_chain378] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain397-method_chain397] [gw41] [ 77%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain377-method_chain377] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain418-method_chain418] [gw27] [ 78%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain379-method_chain379] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain406-method_chain406] [gw31] [ 78%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain390-method_chain390] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain412-method_chain412] [gw28] [ 78%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain383-method_chain383] [gw37] [ 78%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain384-method_chain384] [gw30] [ 78%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain394-method_chain394] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain405-method_chain405] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain411-method_chain411] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain414-method_chain414] [gw33] [ 79%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain399-method_chain399] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain419-method_chain419] [gw21] [ 79%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain401-method_chain401] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain421-method_chain421] [gw12] [ 79%] PASSED tests/test_binary.py::test_join[False] [gw24] [ 79%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain402-method_chain402] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain420-method_chain420] tests/test_binary.py::test_join[same] [gw36] [ 79%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain403-method_chain403] [gw40] [ 80%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain404-method_chain404] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain424-method_chain424] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain423-method_chain423] [gw35] [ 80%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain395-method_chain395] [gw11] [ 80%] PASSED tests/test_binary.py::test_nearest[downstream-False-opposite] [gw39] [ 80%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain398-method_chain398] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain416-method_chain416] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain417-method_chain417] tests/test_binary.py::test_jaccard[False] [gw38] [ 80%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain410-method_chain410] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain430-method_chain430] [gw9] [ 80%] PASSED tests/test_binary.py::test_nearest[upstream-False-opposite] [gw32] [ 81%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain409-method_chain409] [gw23] [ 81%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain407-method_chain407] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain426-method_chain426] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain425-method_chain425] tests/test_binary.py::test_nearest[downstream-True-False] [gw34] [ 81%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain408-method_chain408] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain427-method_chain427] [gw26] [ 81%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain413-method_chain413] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain428-method_chain428] [gw29] [ 81%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain396-method_chain396] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain422-method_chain422] [gw22] [ 82%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain392-method_chain392] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain415-method_chain415] [gw31] [ 82%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain412-method_chain412] [gw20] [ 82%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain400-method_chain400] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain434-method_chain434] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain429-method_chain429] [gw37] [ 82%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain411-method_chain411] [gw28] [ 82%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain405-method_chain405] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain436-method_chain436] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain435-method_chain435] [gw33] [ 83%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain419-method_chain419] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain438-method_chain438] [gw41] [ 83%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain418-method_chain418] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain432-method_chain432] [gw30] [ 83%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain414-method_chain414] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain437-method_chain437] [gw21] [ 83%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain421-method_chain421] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain439-method_chain439] [gw27] [ 83%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain406-method_chain406] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain433-method_chain433] [gw40] [ 83%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain423-method_chain423] tests/test_getset_attr.py::test_getsetattr_fails [gw40] [ 84%] PASSED tests/test_getset_attr.py::test_getsetattr_fails tests/windows/test_windows.py::test_windows [gw40] [ 84%] PASSED tests/windows/test_windows.py::test_windows tests/windows/test_windows.py::test_windows2 [gw40] [ 84%] PASSED tests/windows/test_windows.py::test_windows2 [gw36] [ 84%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain424-method_chain424] tests/test_getset_attr.py::test_getsetattr [gw36] [ 84%] PASSED tests/test_getset_attr.py::test_getsetattr [gw39] [ 85%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain417-method_chain417] tests/test_io.py::test_read_gtf [gw39] [ 85%] PASSED tests/test_io.py::test_read_gtf [gw7] [ 85%] PASSED tests/test_binary.py::test_nearest[None-False-opposite] [gw8] [ 85%] PASSED tests/test_binary.py::test_nearest[upstream-True-opposite] tests/test_binary.py::test_nearest[upstream-True-False] [gw35] [ 85%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain416-method_chain416] [gw32] [ 86%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain426-method_chain426] tests/test_binary.py::test_nearest[upstream-False-False] tests/test_getset_attr.py::test_getsetattr_with_str tests/test_pickle.py::test_pickle [gw32] [ 86%] PASSED tests/test_pickle.py::test_pickle [gw35] [ 86%] PASSED tests/test_getset_attr.py::test_getsetattr_with_str [gw23] [ 86%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain425-method_chain425] [gw29] [ 86%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain422-method_chain422] tests/test_unary.py::test_cluster[True] [gw24] [ 87%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain420-method_chain420] tests/test_stranded.py::test_stranded tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain440-method_chain440] [gw23] [ 87%] PASSED tests/test_stranded.py::test_stranded [gw22] [ 87%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain415-method_chain415] tests/test_unary.py::test_cluster[False] [gw25] [ 87%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain397-method_chain397] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain431-method_chain431] [gw33] [ 87%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain438-method_chain438] tests/test_unary.py::test_windows [gw28] [ 87%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain435-method_chain435] [gw31] [ 88%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain434-method_chain434] tests/test_unary.py::test_merge_by[False] tests/test_unary.py::test_cluster_by[True] [gw37] [ 88%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain436-method_chain436] tests/test_unary.py::test_merge_by[True] [gw30] [ 88%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain437-method_chain437] tests/test_unary.py::test_init[False] [gw38] [ 88%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain430-method_chain430] tests/test_io.py::test_read_bed [gw38] [ 88%] PASSED tests/test_io.py::test_read_bed [gw26] [ 89%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain428-method_chain428] tests/test_unary.py::test_merge[False] [gw21] [ 89%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain439-method_chain439] tests/test_unary.py::test_getitem [gw10] [ 89%] PASSED tests/test_binary.py::test_nearest[downstream-True-opposite] [gw20] [ 89%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain429-method_chain429] [gw24] [ 89%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain440-method_chain440] tests/test_binary.py::test_nearest[downstream-False-False] tests/test_unary.py::test_cluster_by[False] [gw34] [ 90%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain427-method_chain427] tests/test_unary.py::test_merge[True] [gw27] [ 90%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain433-method_chain433] tests/test_unary.py::test_summary [gw0] [ 90%] PASSED tests/test_binary.py::test_set_intersect[same] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain249-method_chain249] [gw41] [ 90%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain432-method_chain432] tests/test_unary.py::test_init[True] [gw25] [ 90%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain431-method_chain431] [gw6] [ 90%] PASSED tests/test_binary.py::test_nearest[None-True-opposite] tests/test_binary.py::test_nearest[None-False-False] [gw0] [ 91%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain249-method_chain249] [gw30] [ 91%] PASSED tests/test_unary.py::test_init[False] [gw41] [ 91%] PASSED tests/test_unary.py::test_init[True] [gw1] [ 91%] PASSED tests/test_binary.py::test_set_union[same] tests/test_binary.py::test_overlap[False] [gw16] [ 91%] PASSED tests/test_binary.py::test_k_nearest[upstream-False-False-last] tests/test_binary.py::test_k_nearest[upstream-True-opposite-last] [gw21] [ 92%] PASSED tests/test_unary.py::test_getitem [gw2] [ 92%] PASSED tests/test_binary.py::test_intersect[False] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain393-method_chain393] [gw14] [ 92%] PASSED tests/test_binary.py::test_k_nearest[downstream-False-False-last] tests/test_binary.py::test_k_nearest[downstream-True-opposite-last] [gw4] [ 92%] PASSED tests/test_binary.py::test_coverage[opposite] [gw2] [ 92%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain393-method_chain393] tests/test_binary.py::test_subtraction[same] [gw13] [ 93%] PASSED tests/test_binary.py::test_k_nearest[downstream-False-opposite-last] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain382-method_chain382] [gw12] [ 93%] PASSED tests/test_binary.py::test_join[same] tests/test_genomicfeatures.py::test_introns_single [gw27] [ 93%] PASSED tests/test_unary.py::test_summary [gw18] [ 93%] PASSED tests/test_binary.py::test_k_nearest[None-False-False-last] tests/test_binary.py::test_k_nearest[None-True-opposite-last] [gw13] [ 93%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain382-method_chain382] [gw5] [ 93%] PASSED tests/test_binary.py::test_subtraction[False] tests/test_binary.py::test_nearest[None-True-False] [gw12] [ 94%] PASSED tests/test_genomicfeatures.py::test_introns_single [gw11] [ 94%] PASSED tests/test_binary.py::test_jaccard[False] tests/test_io.py::test_read_gff3 [gw11] [ 94%] PASSED tests/test_io.py::test_read_gff3 [gw26] [ 94%] PASSED tests/test_unary.py::test_merge[False] [gw8] [ 94%] PASSED tests/test_binary.py::test_nearest[upstream-False-False] [gw3] [ 95%] PASSED tests/test_binary.py::test_coverage[False] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain385-method_chain385] [gw15] [ 95%] PASSED tests/test_binary.py::test_k_nearest[downstream-True-False-last] tests/test_binary.py::test_k_nearest[upstream-False-opposite-last] [gw9] [ 95%] PASSED tests/test_binary.py::test_nearest[downstream-True-False] tests/test_stranded.py::test_unstrand [gw9] [ 95%] PASSED tests/test_stranded.py::test_unstrand [gw10] [ 95%] PASSED tests/test_binary.py::test_nearest[downstream-False-False] [gw34] [ 96%] PASSED tests/test_unary.py::test_merge[True] [gw28] [ 96%] PASSED tests/test_unary.py::test_merge_by[False] [gw7] [ 96%] PASSED tests/test_binary.py::test_nearest[upstream-True-False] [gw3] [ 96%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain385-method_chain385] [gw37] [ 96%] PASSED tests/test_unary.py::test_merge_by[True] [gw33] [ 96%] PASSED tests/test_unary.py::test_windows [gw17] [ 97%] PASSED tests/test_binary.py::test_k_nearest[upstream-True-False-last] tests/test_binary.py::test_k_nearest[None-False-opposite-last] [gw1] [ 97%] PASSED tests/test_binary.py::test_overlap[False] [gw6] [ 97%] PASSED tests/test_binary.py::test_nearest[None-False-False] [gw29] [ 97%] PASSED tests/test_unary.py::test_cluster[True] [gw19] [ 97%] PASSED tests/test_binary.py::test_k_nearest[None-True-False-last] tests/test_binary.py::test_k_nearest_1_vs_nearest [gw22] [ 98%] PASSED tests/test_unary.py::test_cluster[False] [gw31] [ 98%] PASSED tests/test_unary.py::test_cluster_by[True] [gw16] [ 98%] PASSED tests/test_binary.py::test_k_nearest[upstream-True-opposite-last] [gw14] [ 98%] PASSED tests/test_binary.py::test_k_nearest[downstream-True-opposite-last] [gw5] [ 98%] PASSED tests/test_binary.py::test_nearest[None-True-False] [gw15] [ 99%] PASSED tests/test_binary.py::test_k_nearest[upstream-False-opposite-last] [gw4] [ 99%] PASSED tests/test_binary.py::test_subtraction[same] [gw20] [ 99%] PASSED tests/test_unary.py::test_cluster_by[False] [gw18] [ 99%] PASSED tests/test_binary.py::test_k_nearest[None-True-opposite-last] [gw17] [ 99%] PASSED tests/test_binary.py::test_k_nearest[None-False-opposite-last] [gw19] [100%] PASSED tests/test_binary.py::test_k_nearest_1_vs_nearest =============================== warnings summary =============================== tests/conftest.py:83 /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/conftest.py:83: SyntaxWarning: invalid escape sequence '\s' sep="\s+", pyranges/__init__.py:18: 43 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/__init__.py:18: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html import pkg_resources tests/test_binary.py:118: 42 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_binary.py:118: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) tests/test_binary.py:139: 42 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_binary.py:139: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) tests/test_binary.py:160: 42 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_binary.py:160: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) tests/test_binary.py:187: 42 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_binary.py:187: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) tests/test_binary.py:212: 42 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_binary.py:212: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) tests/test_binary.py:291: 42 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_binary.py:291: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) tests/test_binary.py:329: 42 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_binary.py:329: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) tests/test_binary.py:368: 42 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_binary.py:368: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) tests/test_binary.py:392: 42 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_binary.py:392: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) tests/test_binary.py:426: 42 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_binary.py:426: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) tests/test_binary.py:516: 42 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_binary.py:516: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) tests/test_binary.py:579: 42 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_binary.py:579: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) pyranges/methods/init.py:60: 210 warnings .pybuild/cpython3_3.12_pyranges/build/tests/test_change_chromosome_custom.py: 2 warnings .pybuild/cpython3_3.12_pyranges/build/tests/test_concat.py: 8 warnings .pybuild/cpython3_3.12_pyranges/build/tests/test_count_overlaps.py: 1 warning .pybuild/cpython3_3.12_pyranges/build/tests/data/test_data.py: 9 warnings .pybuild/cpython3_3.12_pyranges/build/tests/test_do_not_error.py: 159782 warnings .pybuild/cpython3_3.12_pyranges/build/tests/test_binary.py: 160279 warnings .pybuild/cpython3_3.12_pyranges/build/tests/test_getset_attr.py: 3 warnings .pybuild/cpython3_3.12_pyranges/build/tests/windows/test_windows.py: 2 warnings .pybuild/cpython3_3.12_pyranges/build/tests/test_io.py: 4 warnings .pybuild/cpython3_3.12_pyranges/build/tests/test_pickle.py: 1 warning .pybuild/cpython3_3.12_pyranges/build/tests/test_stranded.py: 6 warnings .pybuild/cpython3_3.12_pyranges/build/tests/test_unary.py: 24083 warnings .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py: 358 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/methods/init.py:60: FutureWarning: The default of observed=False is deprecated and will be changed to True in a future version of pandas. Pass observed=False to retain current behavior or observed=True to adopt the future default and silence this warning. return {k: v for k, v in df.groupby(grpby_key)} pyranges/methods/init.py:189: 168 warnings .pybuild/cpython3_3.12_pyranges/build/tests/test_change_chromosome_custom.py: 1 warning .pybuild/cpython3_3.12_pyranges/build/tests/test_concat.py: 7 warnings .pybuild/cpython3_3.12_pyranges/build/tests/test_do_not_error.py: 4408 warnings .pybuild/cpython3_3.12_pyranges/build/tests/test_binary.py: 2000 warnings .pybuild/cpython3_3.12_pyranges/build/tests/test_stranded.py: 2 warnings .pybuild/cpython3_3.12_pyranges/build/tests/test_unary.py: 6391 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/methods/init.py:189: FutureWarning: The default of observed=False is deprecated and will be changed to True in a future version of pandas. Pass observed=False to retain current behavior or observed=True to adopt the future default and silence this warning. empty_removed = df.groupby("Chromosome") tests/test_do_not_error.py:46: 42 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_do_not_error.py:46: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) tests/test_unary.py:35: 42 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_unary.py:35: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) tests/test_unary.py:100: 42 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_unary.py:100: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) tests/test_unary.py:163: 42 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_unary.py:163: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) tests/test_unary.py:205: 42 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_unary.py:205: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) tests/test_unary.py:234: 42 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_unary.py:234: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) tests/test_unary.py:272: 42 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_unary.py:272: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) tests/test_unary.py:287: 42 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_unary.py:287: HypothesisDeprecationWarning: The return_value health check is deprecated, because this is always an error. @settings( tests/test_unary.py:315: 42 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_unary.py:315: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) .pybuild/cpython3_3.12_pyranges/build/tests/test_concat.py::test_concat_unstranded_stranded /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/methods/concat.py:47: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[NaN, NaN, NaN, '+', '-'] Categories (3, object): ['+', '-', '.']' has dtype incompatible with category, please explicitly cast to a compatible dtype first. v.loc[:, "Strand"] = type_v.cat.add_categories(["."]) .pybuild/cpython3_3.12_pyranges/build/tests/test_concat.py::test_concat_stranded_unstranded /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/methods/concat.py:47: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['+', '+', '-', NaN, NaN] Categories (3, object): ['+', '-', '.']' has dtype incompatible with category, please explicitly cast to a compatible dtype first. v.loc[:, "Strand"] = type_v.cat.add_categories(["."]) .pybuild/cpython3_3.12_pyranges/build/tests/test_concat.py: 1 warning .pybuild/cpython3_3.12_pyranges/build/tests/test_do_not_error.py: 3073 warnings .pybuild/cpython3_3.12_pyranges/build/tests/test_stranded.py: 2 warnings .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py: 119 warnings .pybuild/cpython3_3.12_pyranges/build/tests/test_unary.py: 5391 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/methods/init.py:187: FutureWarning: The default of observed=False is deprecated and will be changed to True in a future version of pandas. Pass observed=False to retain current behavior or observed=True to adopt the future default and silence this warning. empty_removed = df.groupby(["Chromosome", "Strand"]) .pybuild/cpython3_3.12_pyranges/build/tests/test_do_not_error.py: 7007 warnings .pybuild/cpython3_3.12_pyranges/build/tests/test_binary.py: 16456 warnings .pybuild/cpython3_3.12_pyranges/build/tests/test_unary.py: 15688 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/tostring2.py:31: FutureWarning: The behavior of DataFrame concatenation with empty or all-NA entries is deprecated. In a future version, this will no longer exclude empty or all-NA columns when determining the result dtypes. To retain the old behavior, exclude the relevant entries before the concat operation. df = pd.concat([plus, minus]) .pybuild/cpython3_3.12_pyranges/build/tests/test_do_not_error.py: 1474 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/pyranges.py:3779: FutureWarning: The behavior of Series.replace (and DataFrame.replace) with CategoricalDtype is deprecated. In a future version, replace will only be used for cases that preserve the categories. To change the categories, use ser.cat.rename_categories instead. other.Strand = other.Strand.replace({"+": "-", "-": "+"}) .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1217804. 1221351. 1223357. 1223968. 1227319. 1228946. 1232031.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000078808.16' 'ENSG00000078808.16' 'ENSG00000078808.16' 'ENSG00000078808.16' 'ENSG00000078808.16' 'ENSG00000078808.16']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1336515. 1337055. 1338183. 1338436. 1338653. 1339812. 1340190. 1340365. 1340503. 1342156. 1342484. 1342758. 1349350.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000107404.19' 'ENSG00000107404.19' 'ENSG00000107404.19' 'ENSG00000107404.19' 'ENSG00000107404.19' 'ENSG00000107404.19' 'ENSG00000107404.19' 'ENSG00000107404.19' 'ENSG00000107404.19' 'ENSG00000107404.19' 'ENSG00000107404.19' 'ENSG00000107404.19']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1311924. 1312147. 1313592. 1315697. 1317450. 1321096. 1321984. 1323287. 1324691.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000127054.20' 'ENSG00000127054.20' 'ENSG00000127054.20' 'ENSG00000127054.20' 'ENSG00000127054.20' 'ENSG00000127054.20' 'ENSG00000127054.20' 'ENSG00000127054.20']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1293708. 1293933. 1294199. 1294628. 1295008. 1295554. 1295938. 1296109. 1296280. 1296633. 1297933. 1298265. 1298421. 1299905. 1300068. 1300202. 1300692. 1302046. 1302975. 1305929. 1307156. 1307383. 1308018. 1309609.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1084506. 1085310. 1086012. 1087636. 1092294. 1092813. 1106127. 1106871. 1115075. 1116361.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000131591.17' 'ENSG00000131591.17' 'ENSG00000131591.17' 'ENSG00000131591.17' 'ENSG00000131591.17' 'ENSG00000131591.17' 'ENSG00000131591.17' 'ENSG00000131591.17' 'ENSG00000131591.17']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1472089. 1477350. 1478745. 1479108. 1480936. 1482303. 1482662. 1485171. 1486235. 1486668. 1487914. 1490671. 1497848.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000160072.19' 'ENSG00000160072.19' 'ENSG00000160072.19' 'ENSG00000160072.19' 'ENSG00000160072.19' 'ENSG00000160072.19' 'ENSG00000160072.19' 'ENSG00000160072.19' 'ENSG00000160072.19' 'ENSG00000160072.19' 'ENSG00000160072.19' 'ENSG00000160072.19']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1255487. 1256335. 1257130. 1257310. 1262390. 1263569. 1264830. 1266290. 1267992. 1271637. 1273885.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000160087.20' 'ENSG00000160087.20' 'ENSG00000160087.20' 'ENSG00000160087.20' 'ENSG00000160087.20' 'ENSG00000160087.20' 'ENSG00000160087.20' 'ENSG00000160087.20' 'ENSG00000160087.20' 'ENSG00000160087.20']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1173926. 1174321. 1174489. 1175034. 1179333. 1179853. 1180340. 1180884. 1181815. 1182446. 1183047. 1184091. 1185864. 1196488. 1196716. 1197186. 1197935.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000162571.13' 'ENSG00000162571.13' 'ENSG00000162571.13' 'ENSG00000162571.13' 'ENSG00000162571.13' 'ENSG00000162571.13' 'ENSG00000162571.13' 'ENSG00000162571.13' 'ENSG00000162571.13' 'ENSG00000162571.13' 'ENSG00000162571.13' 'ENSG00000162571.13' 'ENSG00000162571.13' 'ENSG00000162571.13' 'ENSG00000162571.13' 'ENSG00000162571.13']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1281610. 1282010. 1282319. 1284090. 1285664. 1286278. 1286975. 1287299. 1287836. 1288037. 1290388. 1290555. 1290694. 1290953. 1291140. 1292029.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000162572.20' 'ENSG00000162572.20' 'ENSG00000162572.20' 'ENSG00000162572.20' 'ENSG00000162572.20' 'ENSG00000162572.20' 'ENSG00000162572.20' 'ENSG00000162572.20' 'ENSG00000162572.20' 'ENSG00000162572.20' 'ENSG00000162572.20' 'ENSG00000162572.20' 'ENSG00000162572.20' 'ENSG00000162572.20' 'ENSG00000162572.20']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1353946. 1354106. 1354509. 1355752. 1356704. 1358794. 1361777.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000162576.16' 'ENSG00000162576.16' 'ENSG00000162576.16' 'ENSG00000162576.16' 'ENSG00000162576.16' 'ENSG00000162576.16']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1331536. 1331938. 1332806. 1333124. 1333379. 1335306.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000169962.4' 'ENSG00000169962.4' 'ENSG00000169962.4' 'ENSG00000169962.4' 'ENSG00000169962.4']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1308720. 1308972. 1309851. 1311071. 1311677.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000169972.11' 'ENSG00000169972.11' 'ENSG00000169972.11' 'ENSG00000169972.11']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1373902. 1375495.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000175756.13']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1235041.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 818202. 819837.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000177757.2']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1435146. 1435821. 1437484. 1442882.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000179403.11' 'ENSG00000179403.11' 'ENSG00000179403.11']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1242646. 1243552. 1244275. 1244724. 1246722.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000184163.3' 'ENSG00000184163.3' 'ENSG00000184163.3' 'ENSG00000184163.3']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 65433. 65573. 71585.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000186092.6' 'ENSG00000186092.6']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1211832. 1212138. 1212704. 1213785. 1214138.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000186827.10' 'ENSG00000186827.10' 'ENSG00000186827.10' 'ENSG00000186827.10']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1203968. 1204236. 1204486. 1205680. 1206691.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000186891.13' 'ENSG00000186891.13' 'ENSG00000186891.13' 'ENSG00000186891.13']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 966614. 966803. 970423. 970601. 971006. 971208. 971523. 972150. 972424. 973010. 973326. 973640. 974051. 974364. 975108. 975865.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000187583.10' 'ENSG00000187583.10' 'ENSG00000187583.10' 'ENSG00000187583.10' 'ENSG00000187583.10' 'ENSG00000187583.10' 'ENSG00000187583.10' 'ENSG00000187583.10' 'ENSG00000187583.10' 'ENSG00000187583.10' 'ENSG00000187583.10' 'ENSG00000187583.10' 'ENSG00000187583.10' 'ENSG00000187583.10' 'ENSG00000187583.10']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1001281. 1008279. 1013576. 1014540.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000187608.9' 'ENSG00000187608.9' 'ENSG00000187608.9']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 924948. 925189. 925800. 926013. 930336. 931089. 935896. 939129. 939460. 940462. 941306. 943058. 943377. 944581.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000187634.11' 'ENSG00000187634.11' 'ENSG00000187634.11' 'ENSG00000187634.11' 'ENSG00000187634.11' 'ENSG00000187634.11' 'ENSG00000187634.11' 'ENSG00000187634.11' 'ENSG00000187634.11' 'ENSG00000187634.11' 'ENSG00000187634.11' 'ENSG00000187634.11' 'ENSG00000187634.11']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 976269. 976641. 981029. 981173. 982093.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000187642.9' 'ENSG00000187642.9' 'ENSG00000187642.9' 'ENSG00000187642.9']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 960800. 961750. 962478. 962917. 963253. 963504. 964008. 964180. 964530. 965715.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000187961.13' 'ENSG00000187961.13' 'ENSG00000187961.13' 'ENSG00000187961.13' 'ENSG00000187961.13' 'ENSG00000187961.13' 'ENSG00000187961.13' 'ENSG00000187961.13' 'ENSG00000187961.13']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1020373. 1022462. 1034703. 1035324. 1040880. 1041397. 1041702. 1042162. 1043457. 1043732. 1044023. 1044257. 1044439. 1045277. 1045523. 1045876. 1046088. 1046349. 1046735. 1046957. 1047454. 1047687. 1047895. 1048365. 1049059. 1049451. 1049795. 1050037. 1050329. 1050591. 1050837. 1051043. 1051369. 1051645. 1051815. 1053977. 1054551. 1056118.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 999432. 1000172.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000188290.10']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 944800. 945146. 945422. 945653. 946286. 947060. 948232. 948603. 951238. 952139. 952600. 953288. 953892. 954523. 956013. 956215. 957025. 959081. 959309.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000188976.10' 'ENSG00000188976.10' 'ENSG00000188976.10' 'ENSG00000188976.10' 'ENSG00000188976.10' 'ENSG00000188976.10' 'ENSG00000188976.10' 'ENSG00000188976.10' 'ENSG00000188976.10' 'ENSG00000188976.10' 'ENSG00000188976.10' 'ENSG00000188976.10' 'ENSG00000188976.10' 'ENSG00000188976.10' 'ENSG00000188976.10' 'ENSG00000188976.10' 'ENSG00000188976.10' 'ENSG00000188976.10']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1512473. 1516088. 1517412. 1517775. 1518990. 1520306. 1520617.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000197785.13' 'ENSG00000197785.13' 'ENSG00000197785.13' 'ENSG00000197785.13' 'ENSG00000197785.13' 'ENSG00000197785.13' 'ENSG00000197785.13']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 634922.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1169087.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1426385. 1427787.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000205116.3']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1176396. 1179555.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000205231.1']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1167952.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1167198.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1450758. 1452122. 1452434. 1454500. 1455519. 1455916. 1456349. 1457180. 1459231. 1460917. 1462708. 1470158.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000215915.9' 'ENSG00000215915.9' 'ENSG00000215915.9' 'ENSG00000215915.9' 'ENSG00000215915.9' 'ENSG00000215915.9' 'ENSG00000215915.9' 'ENSG00000215915.9' 'ENSG00000215915.9' 'ENSG00000215915.9' 'ENSG00000215915.9']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1059846. 1060393. 1061117. 1063201. 1063566. 1064401. 1064589. 1065475. 1066456. 1066667. 1067646. 1068003. 1068724. 1069355.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000217801.9' 'ENSG00000217801.9' 'ENSG00000217801.9' 'ENSG00000217801.9' 'ENSG00000217801.9' 'ENSG00000217801.9' 'ENSG00000217801.9' 'ENSG00000217801.9' 'ENSG00000217801.9' 'ENSG00000217801.9' 'ENSG00000217801.9' 'ENSG00000217801.9' 'ENSG00000217801.9']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1387582. 1387869. 1388743. 1388830. 1389047. 1389473. 1390371. 1390563. 1392803. 1393460. 1395537. 1398366. 1398956. 1399328.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000221978.11' 'ENSG00000221978.11' 'ENSG00000221978.11' 'ENSG00000221978.11' 'ENSG00000221978.11' 'ENSG00000221978.11' 'ENSG00000221978.11' 'ENSG00000221978.11' 'ENSG00000221978.11' 'ENSG00000221978.11' 'ENSG00000221978.11' 'ENSG00000221978.11' 'ENSG00000221978.11']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 157887.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 758336.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1379032.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 921016.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1137110. 1141032. 1144056.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000223823.1' 'ENSG00000223823.1']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 12227. 12721. 13052. 14409.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000223972.5' 'ENSG00000223972.5' 'ENSG00000223972.5']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1325102. 1325595. 1327032. 1328897.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000224051.6' 'ENSG00000224051.6' 'ENSG00000224051.6']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1402046.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1012190. 1013193.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000224969.1']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1430954. 1431843. 1434573.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000225285.1' 'ENSG00000225285.1']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 630683.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 827522.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1420564. 1422691.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000225905.1']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 629433.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 14501. 15038. 15947. 16765. 17055. 17368. 17742. 18061. 18366. 24891. 29570.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000227232.5' 'ENSG00000227232.5' 'ENSG00000227232.5' 'ENSG00000227232.5' 'ENSG00000227232.5' 'ENSG00000227232.5' 'ENSG00000227232.5' 'ENSG00000227232.5' 'ENSG00000227232.5' 'ENSG00000227232.5']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 729804. 733364. 735613. 743350. 744391. 744825. 746818. 756141. 759123. 765247. 766387. 768613. 769712. 773107. 774280. 778626.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000228327.3' 'ENSG00000228327.3' 'ENSG00000228327.3' 'ENSG00000228327.3' 'ENSG00000228327.3' 'ENSG00000228327.3' 'ENSG00000228327.3' 'ENSG00000228327.3' 'ENSG00000228327.3' 'ENSG00000228327.3' 'ENSG00000228327.3' 'ENSG00000228327.3' 'ENSG00000228327.3' 'ENSG00000228327.3' 'ENSG00000228327.3']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 259025. 261634. 268204. 268816. 289370. 297502. 357586. 358183. 359681.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000228463.10' 'ENSG00000228463.10' 'ENSG00000228463.10' 'ENSG00000228463.10' 'ENSG00000228463.10' 'ENSG00000228463.10' 'ENSG00000228463.10' 'ENSG00000228463.10']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 825552. 826923. 827775. 827853. 829104. 831677. 842020. 847806. 849602. 850351. 852515. 852766. 859446.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000228794.8' 'ENSG00000228794.8' 'ENSG00000228794.8' 'ENSG00000228794.8' 'ENSG00000228794.8' 'ENSG00000228794.8' 'ENSG00000228794.8' 'ENSG00000228794.8' 'ENSG00000228794.8' 'ENSG00000228794.8' 'ENSG00000228794.8' 'ENSG00000228794.8']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 633438.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 724360. 724903.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000229376.3']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 761154. 761989.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000229905.1']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 586358. 586955. 588453. 594756. 598551. 601577. 608056. 612864. 627823. 628223. 629006. 631204. 633129. 698959. 702340. 703789. 711922. 720206. 724564. 732212. 733064. 827796.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000230021.10' 'ENSG00000230021.10' 'ENSG00000230021.10' 'ENSG00000230021.10' 'ENSG00000230021.10' 'ENSG00000230021.10' 'ENSG00000230021.10' 'ENSG00000230021.10' 'ENSG00000230021.10' 'ENSG00000230021.10' 'ENSG00000230021.10' 'ENSG00000230021.10' 'ENSG00000230021.10' 'ENSG00000230021.10' 'ENSG00000230021.10' 'ENSG00000230021.10' 'ENSG00000230021.10' 'ENSG00000230021.10' 'ENSG00000230021.10' 'ENSG00000230021.10' 'ENSG00000230021.10']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 801163. 805891. 808623. 810170. 817712.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000230092.7' 'ENSG00000230092.7' 'ENSG00000230092.7' 'ENSG00000230092.7']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 868675. 869575. 870201. 875155. 876903.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000230368.2' 'ENSG00000230368.2' 'ENSG00000230368.2' 'ENSG00000230368.2']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1275299. 1279393. 1280420.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000230415.1' 'ENSG00000230415.1']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 911473. 914948.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000230699.2']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1008229.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 489387. 489906.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000233653.3']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 134836.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 874349.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1419549. 1420592. 1421769.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000235098.8' 'ENSG00000235098.8']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 587729. 594768.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000235146.2']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 358957. 360168. 366052.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000236601.2' 'ENSG00000236601.2']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 348366.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 365692. 366151. 368450. 373323. 379972. 476945. 485208. 489553. 494898. 495049. 495476. 496605. 497299. 498305. 499369. 501620. 502243. 502955. 505103. 514423. 517266. 522928.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000237094.12' 'ENSG00000237094.12' 'ENSG00000237094.12' 'ENSG00000237094.12' 'ENSG00000237094.12' 'ENSG00000237094.12' 'ENSG00000237094.12' 'ENSG00000237094.12' 'ENSG00000237094.12' 'ENSG00000237094.12' 'ENSG00000237094.12' 'ENSG00000237094.12' 'ENSG00000237094.12' 'ENSG00000237094.12' 'ENSG00000237094.12' 'ENSG00000237094.12' 'ENSG00000237094.12' 'ENSG00000237094.12' 'ENSG00000237094.12' 'ENSG00000237094.12' 'ENSG00000237094.12']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1072575. 1074307.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000237330.2']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 779092. 782191. 783363. 784977. 787672. 793041. 795582. 801876. 803667. 804222. 805270. 806459. 807465. 810060.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000237491.8' 'ENSG00000237491.8' 'ENSG00000237491.8' 'ENSG00000237491.8' 'ENSG00000237491.8' 'ENSG00000237491.8' 'ENSG00000237491.8' 'ENSG00000237491.8' 'ENSG00000237491.8' 'ENSG00000237491.8' 'ENSG00000237491.8' 'ENSG00000237491.8' 'ENSG00000237491.8']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 35174. 35481. 36081.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000237613.2' 'ENSG00000237613.2']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 632616.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 91629. 92240. 111357. 112804. 120932. 129223. 133723.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000238009.6' 'ENSG00000238009.6' 'ENSG00000238009.6' 'ENSG00000238009.6' 'ENSG00000238009.6' 'ENSG00000238009.6']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 139847. 140339.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000239906.1']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 90050. 91105.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000239945.1']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 57653. 58856. 64116.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000240361.2' 'ENSG00000240361.2']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 633741.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1317899. 1318689.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000240731.1']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 914444. 914971.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000241180.1']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 160690. 161525.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000241599.1']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 143011. 149707. 155831. 164791. 165942. 168165. 168767. 169264. 172688. 173862.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000241860.6' 'ENSG00000241860.6' 'ENSG00000241860.6' 'ENSG00000241860.6' 'ENSG00000241860.6' 'ENSG00000241860.6' 'ENSG00000241860.6' 'ENSG00000241860.6' 'ENSG00000241860.6']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1402601. 1407019. 1407313.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000242485.5' 'ENSG00000242485.5']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1055215. 1056116.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000242590.1']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 30039. 30667. 31109.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000243485.5' 'ENSG00000243485.5']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 634376.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 491989. 493241.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000250575.1']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1251334.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1405752.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 53312.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 675265.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 135895.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 440232.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 137965.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1170343.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 904957. 915976.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000272438.1']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1410618.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 998051.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1062808. 1063288.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000273443.1']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 187958.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1296170.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 17436.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 516479.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 632413.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 185350. 185559. 186469. 187287. 187577. 187890. 188266. 188584. 188902. 195411.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000279457.4' 'ENSG00000279457.4' 'ENSG00000279457.4' 'ENSG00000279457.4' 'ENSG00000279457.4' 'ENSG00000279457.4' 'ENSG00000279457.4' 'ENSG00000279457.4' 'ENSG00000279457.4']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 182746. 183216. 183571. 183901. 184174.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000279928.2' 'ENSG00000279928.2' 'ENSG00000279928.2' 'ENSG00000279928.2']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 874591. 875155. 875625. 876611. 877234.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000283040.1' 'ENSG00000283040.1' 'ENSG00000283040.1' 'ENSG00000283040.1']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1312566.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 30503.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1339708.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 686673.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 451697.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1503661. 1509452.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000284740.1']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 782050.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1098113. 1104598.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000285812.1']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_unary.py: 2000 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_unary.py:153: FutureWarning: A value is trying to be set on a copy of a DataFrame or Series through chained assignment using an inplace method. The behavior will change in pandas 3.0. This inplace method will never work because the intermediate object on which we are setting values always behaves as a copy. For example, when doing 'df[col].method(value, inplace=True)', try using 'df.method({col: value}, inplace=True)' or df[col] = df[col].method(value) instead, to perform the operation inplace on the original object. result_df.Cluster.replace(cluster_ids, inplace=True) .pybuild/cpython3_3.12_pyranges/build/tests/test_unary.py: 2000 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_unary.py:178: FutureWarning: The default of observed=False is deprecated and will be changed to True in a future version of pandas. Pass observed=False to retain current behavior or observed=True to adopt the future default and silence this warning. for _, gdf in natsorted(df.groupby(groupby)): -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html =============== 531 passed, 412060 warnings in 754.08s (0:12:34) =============== create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/python3-pyranges/ -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3.13 setup.py install --root /build/reproducible-path/pyranges-0.0.111+ds/debian/python3-pyranges /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() /usr/lib/python3.13/dist-packages/tests/conftest.py:83: SyntaxWarning: invalid escape sequence '\s' I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/pyranges-0.0.111+ds/debian/python3-pyranges /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() /usr/lib/python3.12/dist-packages/tests/conftest.py:83: SyntaxWarning: invalid escape sequence '\s' debian/rules execute_after_dh_install make[1]: Entering directory '/build/reproducible-path/pyranges-0.0.111+ds' find debian/ -name *.bam* | xargs rm -rf find debian/ -name 'hi' | xargs rm -rf find debian/ -name '.hypothesis' | xargs rm -rf make[1]: Leaving directory '/build/reproducible-path/pyranges-0.0.111+ds' dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-pyranges' in '../python3-pyranges_0.0.111+ds-8_all.deb'. dpkg-genbuildinfo --build=binary -O../pyranges_0.0.111+ds-8_amd64.buildinfo dpkg-genchanges --build=binary -O../pyranges_0.0.111+ds-8_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-source: info: using options from pyranges-0.0.111+ds/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2206354 and its subdirectories I: Current time: Tue Feb 24 03:45:27 -12 2026 I: pbuilder-time-stamp: 1771947927 Tue Feb 24 15:45:27 UTC 2026 I: Signing ./b1/pyranges_0.0.111+ds-8_amd64.buildinfo as pyranges_0.0.111+ds-8_amd64.buildinfo.asc Tue Feb 24 15:45:27 UTC 2026 I: Signed ./b1/pyranges_0.0.111+ds-8_amd64.buildinfo as ./b1/pyranges_0.0.111+ds-8_amd64.buildinfo.asc Tue Feb 24 15:45:27 UTC 2026 - build #1 for pyranges/trixie/amd64 on ionos15-amd64 done. Starting cleanup. All cleanup done. Tue Feb 24 15:45:27 UTC 2026 - reproducible_build.sh stopped running as /tmp/jenkins-script-1jPUVqQf, removing. /srv/reproducible-results/rbuild-debian/r-b-build.1OvWq7Kz: total 16 drwxr-xr-x 2 jenkins jenkins 4096 Jan 22 09:22 b1 drwxr-xr-x 2 jenkins jenkins 4096 Jan 22 08:55 b2 -rw-r--r-- 1 jenkins jenkins 2428 Sep 21 12:03 pyranges_0.0.111+ds-8.dsc -rw------- 1 jenkins jenkins 3559 Jan 22 08:55 rbuildlog.EBpd1D3 /srv/reproducible-results/rbuild-debian/r-b-build.1OvWq7Kz/b1: total 1048 -rw-r--r-- 1 jenkins jenkins 508571 Jan 22 09:22 build.log -rw-r--r-- 1 jenkins jenkins 83524 Jan 22 09:22 pyranges_0.0.111+ds-8.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2428 Jan 22 09:22 pyranges_0.0.111+ds-8.dsc -rw-r--r-- 1 jenkins jenkins 7505 Jan 22 09:22 pyranges_0.0.111+ds-8_amd64.buildinfo -rw-r--r-- 1 jenkins jenkins 8387 Jan 22 09:22 pyranges_0.0.111+ds-8_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1327 Jan 22 09:22 pyranges_0.0.111+ds-8_amd64.changes -rw-r--r-- 1 jenkins jenkins 1453 Jan 22 09:22 pyranges_0.0.111+ds-8_source.changes -rw-r--r-- 1 jenkins jenkins 438280 Jan 22 09:22 python3-pyranges_0.0.111+ds-8_all.deb /srv/reproducible-results/rbuild-debian/r-b-build.1OvWq7Kz/b2: total 0 Wed Jan 22 09:22:28 UTC 2025 I: Deleting $TMPDIR on ionos15-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Tue Feb 24 03:18:35 -12 2026 I: pbuilder-time-stamp: 1771946315 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [pyranges_0.0.111+ds-8.dsc] I: copying [./pyranges_0.0.111+ds.orig.tar.xz] I: copying [./pyranges_0.0.111+ds-8.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./pyranges_0.0.111+ds-8.dsc: unsupported subcommand dpkg-source: info: extracting pyranges in pyranges-0.0.111+ds dpkg-source: info: unpacking pyranges_0.0.111+ds.orig.tar.xz dpkg-source: info: unpacking pyranges_0.0.111+ds-8.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix_dtype.patch dpkg-source: info: applying reorder.patch dpkg-source: info: applying numpy_1.24.patch dpkg-source: info: applying healthcheck-all.patch dpkg-source: info: applying no_install_depends_cython.patch dpkg-source: info: applying pandas2.0.patch dpkg-source: info: applying fix-test_unary.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2206354/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='2f33c3f81d794337928d93118d947e04' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2206354' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.1OvWq7Kz/pbuilderrc_p6EI --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.1OvWq7Kz/b1 --logfile b1/build.log pyranges_0.0.111+ds-8.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos15-amd64 6.11.10+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.11.10-1~bpo12+1 (2024-12-19) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2206354/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, python3-setuptools, python3-all, python3-ncls, python3-pyrle, python3-pytest, python3-pytest-xdist, python3-sorted-nearest, python3-hypothesis, bedtools, samtools dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19856 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-ncls; however: Package python3-ncls is not installed. pbuilder-satisfydepends-dummy depends on python3-pyrle; however: Package python3-pyrle is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest-xdist; however: Package python3-pytest-xdist is not installed. pbuilder-satisfydepends-dummy depends on python3-sorted-nearest; however: Package python3-sorted-nearest is not installed. pbuilder-satisfydepends-dummy depends on python3-hypothesis; however: Package python3-hypothesis is not installed. pbuilder-satisfydepends-dummy depends on bedtools; however: Package bedtools is not installed. pbuilder-satisfydepends-dummy depends on samtools; however: Package samtools is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bedtools{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libcom-err2{a} libcurl3t64-gnutls{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libgnutls30t64{a} libgssapi-krb5-2{a} libhts3t64{a} libhtscodecs2{a} libicu72{a} libidn2-0{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} libldap2{a} libmagic-mgc{a} libmagic1t64{a} libncurses6{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libnsl2{a} libp11-kit0{a} libpipeline1{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libtasn1-6{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-all{a} python3-attr{a} python3-autocommand{a} python3-dateutil{a} python3-execnet{a} python3-hypothesis{a} python3-inflect{a} python3-iniconfig{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-natsort{a} python3-ncls{a} python3-numpy{a} python3-packaging{a} python3-pandas{a} python3-pandas-lib{a} python3-pkg-resources{a} python3-pluggy{a} python3-pyrle{a} python3-pytest{a} python3-pytest-xdist{a} python3-setuptools{a} python3-sorted-nearest{a} python3-sortedcontainers{a} python3-tabulate{a} python3-typeguard{a} python3-typing-extensions{a} python3-tz{a} python3-zipp{a} python3.12{a} python3.12-minimal{a} python3.13{a} python3.13-minimal{a} readline-common{a} samtools{a} sensible-utils{a} tzdata{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libgpm2 libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx publicsuffix python3-bottleneck python3-bs4 python3-click python3-html5lib python3-jinja2 python3-lxml python3-matplotlib python3-numexpr python3-odf python3-openpyxl python3-pygments python3-scipy python3-tables wget 0 packages upgraded, 114 newly installed, 0 to remove and 0 not upgraded. Need to get 61.3 MB of archives. After unpacking 292 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 libpython3.12-minimal amd64 3.12.8-5 [817 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.6.4-1 [106 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 python3.12-minimal amd64 3.12.8-5 [2164 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 python3-minimal amd64 3.12.8-1 [26.9 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 tzdata all 2024b-6 [257 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 libffi8 amd64 3.4.6-1 [23.6 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 libkrb5support0 amd64 1.21.3-3 [32.5 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 libcom-err2 amd64 1.47.2-1 [24.0 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 libk5crypto3 amd64 1.21.3-3 [79.9 kB] Get: 12 http://deb.debian.org/debian trixie/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get: 13 http://deb.debian.org/debian trixie/main amd64 libkrb5-3 amd64 1.21.3-3 [324 kB] Get: 14 http://deb.debian.org/debian trixie/main amd64 libgssapi-krb5-2 amd64 1.21.3-3 [136 kB] Get: 15 http://deb.debian.org/debian trixie/main amd64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.3+b1 [83.1 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 libnsl2 amd64 1.3.0-3+b3 [40.6 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 readline-common all 8.2-6 [69.4 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 libreadline8t64 amd64 8.2-6 [169 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 libpython3.12-stdlib amd64 3.12.8-5 [1971 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 python3.12 amd64 3.12.8-5 [677 kB] Get: 22 http://deb.debian.org/debian trixie/main amd64 libpython3-stdlib amd64 3.12.8-1 [9788 B] Get: 23 http://deb.debian.org/debian trixie/main amd64 python3 amd64 3.12.8-1 [27.9 kB] Get: 24 http://deb.debian.org/debian trixie/main amd64 libpython3.13-minimal amd64 3.13.1-3 [858 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 python3.13-minimal amd64 3.13.1-3 [2202 kB] Get: 26 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 27 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get: 28 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get: 30 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.22.5-4 [200 kB] Get: 31 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 32 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-7 [1185 kB] Get: 33 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.40.4-1 [92.2 kB] Get: 34 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 35 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 36 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-5 [294 kB] Get: 37 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.72-3 [493 kB] Get: 38 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 39 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 40 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.22.5-4 [723 kB] Get: 41 http://deb.debian.org/debian trixie/main amd64 bedtools amd64 2.31.1+dfsg-2 [678 kB] Get: 42 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.23 [90.6 kB] Get: 43 http://deb.debian.org/debian trixie/main amd64 libtool all 2.5.4-2 [539 kB] Get: 44 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 45 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 46 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 47 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 48 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 49 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 50 http://deb.debian.org/debian trixie/main amd64 libunistring5 amd64 1.3-1 [476 kB] Get: 51 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-6 [9421 kB] Get: 52 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB] Get: 53 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.22.5-4 [1600 kB] Get: 54 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 55 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 56 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.23 [919 kB] Get: 57 http://deb.debian.org/debian trixie/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 58 http://deb.debian.org/debian trixie/main amd64 python3-more-itertools all 10.6.0-1 [65.3 kB] Get: 59 http://deb.debian.org/debian trixie/main amd64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 60 http://deb.debian.org/debian trixie/main amd64 python3-typeguard all 4.4.1-1 [37.0 kB] Get: 61 http://deb.debian.org/debian trixie/main amd64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 62 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 63 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 64 http://deb.debian.org/debian trixie/main amd64 python3-pkg-resources all 75.6.0-1 [222 kB] Get: 65 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 66 http://deb.debian.org/debian trixie/main amd64 python3-zipp all 3.21.0-1 [10.6 kB] Get: 67 http://deb.debian.org/debian trixie/main amd64 python3-setuptools all 75.6.0-1 [720 kB] Get: 68 http://deb.debian.org/debian trixie/main amd64 dh-python all 6.20250108 [113 kB] Get: 69 http://deb.debian.org/debian trixie/main amd64 libblas3 amd64 3.12.0-4 [152 kB] Get: 70 http://deb.debian.org/debian trixie/main amd64 libbrotli1 amd64 1.1.0-2+b6 [302 kB] Get: 71 http://deb.debian.org/debian trixie/main amd64 libidn2-0 amd64 2.3.7-2+b1 [129 kB] Get: 72 http://deb.debian.org/debian trixie/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB] Get: 73 http://deb.debian.org/debian trixie/main amd64 libtasn1-6 amd64 4.19.0-3+b3 [49.5 kB] Get: 74 http://deb.debian.org/debian trixie/main amd64 libgnutls30t64 amd64 3.8.8-2 [1454 kB] Get: 75 http://deb.debian.org/debian trixie/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-8+b1 [19.9 kB] Get: 76 http://deb.debian.org/debian trixie/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-8+b1 [57.6 kB] Get: 77 http://deb.debian.org/debian trixie/main amd64 libldap2 amd64 2.6.9+dfsg-1 [192 kB] Get: 78 http://deb.debian.org/debian trixie/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB] Get: 79 http://deb.debian.org/debian trixie/main amd64 libnghttp3-9 amd64 1.6.0-2 [64.8 kB] Get: 80 http://deb.debian.org/debian trixie/main amd64 libngtcp2-16 amd64 1.9.1-1 [119 kB] Get: 81 http://deb.debian.org/debian trixie/main amd64 libngtcp2-crypto-gnutls8 amd64 1.9.1-1 [18.5 kB] Get: 82 http://deb.debian.org/debian trixie/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 83 http://deb.debian.org/debian trixie/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get: 84 http://deb.debian.org/debian trixie/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 85 http://deb.debian.org/debian trixie/main amd64 libcurl3t64-gnutls amd64 8.11.1-1+b1 [360 kB] Get: 86 http://deb.debian.org/debian trixie/main amd64 libdeflate0 amd64 1.23-1+b1 [47.5 kB] Get: 87 http://deb.debian.org/debian trixie/main amd64 libgfortran5 amd64 14.2.0-12 [836 kB] Get: 88 http://deb.debian.org/debian trixie/main amd64 libhtscodecs2 amd64 1.6.1-1 [95.6 kB] Get: 89 http://deb.debian.org/debian trixie/main amd64 libhts3t64 amd64 1.20+ds-2 [455 kB] Get: 90 http://deb.debian.org/debian trixie/main amd64 liblapack3 amd64 3.12.0-4 [2450 kB] Get: 91 http://deb.debian.org/debian trixie/main amd64 libncurses6 amd64 6.5-2+b1 [105 kB] Get: 92 http://deb.debian.org/debian trixie/main amd64 libpython3.13-stdlib amd64 3.13.1-3 [1973 kB] Get: 93 http://deb.debian.org/debian trixie/main amd64 python3.13 amd64 3.13.1-3 [740 kB] Get: 94 http://deb.debian.org/debian trixie/main amd64 python3-all amd64 3.12.8-1 [1048 B] Get: 95 http://deb.debian.org/debian trixie/main amd64 python3-attr all 24.3.0-1 [68.8 kB] Get: 96 http://deb.debian.org/debian trixie/main amd64 python3-dateutil all 2.9.0-3 [79.3 kB] Get: 97 http://deb.debian.org/debian trixie/main amd64 python3-execnet all 2.1.1-1 [40.2 kB] Get: 98 http://deb.debian.org/debian trixie/main amd64 python3-sortedcontainers all 2.4.0-2 [31.9 kB] Get: 99 http://deb.debian.org/debian trixie/main amd64 python3-hypothesis all 6.122.1-1 [326 kB] Get: 100 http://deb.debian.org/debian trixie/main amd64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 101 http://deb.debian.org/debian trixie/main amd64 python3-natsort all 8.0.2-2 [39.0 kB] Get: 102 http://deb.debian.org/debian trixie/main amd64 python3-numpy amd64 1:1.26.4+ds-12 [4738 kB] Get: 103 http://deb.debian.org/debian trixie/main amd64 python3-ncls amd64 0.0.63-hotfix+ds-1+b6 [479 kB] Get: 104 http://deb.debian.org/debian trixie/main amd64 python3-packaging all 24.2-1 [55.3 kB] Get: 105 http://deb.debian.org/debian trixie/main amd64 python3-tz all 2024.2-1 [31.0 kB] Get: 106 http://deb.debian.org/debian trixie/main amd64 python3-pandas-lib amd64 2.2.3+dfsg-5+b1 [7307 kB] Get: 107 http://deb.debian.org/debian trixie/main amd64 python3-pandas all 2.2.3+dfsg-5 [3096 kB] Get: 108 http://deb.debian.org/debian trixie/main amd64 python3-pluggy all 1.5.0-1 [26.9 kB] Get: 109 http://deb.debian.org/debian trixie/main amd64 python3-tabulate all 0.9.0-1 [45.9 kB] Get: 110 http://deb.debian.org/debian trixie/main amd64 python3-pyrle amd64 0.0.33-4.1+b2 [372 kB] Get: 111 http://deb.debian.org/debian trixie/main amd64 python3-pytest all 8.3.4-1 [250 kB] Get: 112 http://deb.debian.org/debian trixie/main amd64 python3-pytest-xdist all 3.6.1-1 [44.4 kB] Get: 113 http://deb.debian.org/debian trixie/main amd64 python3-sorted-nearest amd64 0.0.39+dfsg-3 [603 kB] Get: 114 http://deb.debian.org/debian trixie/main amd64 samtools amd64 1.20-3 [653 kB] Fetched 61.3 MB in 2s (40.1 MB/s) Preconfiguring packages ... Selecting previously unselected package libpython3.12-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19856 files and directories currently installed.) Preparing to unpack .../libpython3.12-minimal_3.12.8-5_amd64.deb ... Unpacking libpython3.12-minimal:amd64 (3.12.8-5) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.6.4-1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.4-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../python3.12-minimal_3.12.8-5_amd64.deb ... Unpacking python3.12-minimal (3.12.8-5) ... Setting up libpython3.12-minimal:amd64 (3.12.8-5) ... Setting up libexpat1:amd64 (2.6.4-1) ... Setting up python3.12-minimal (3.12.8-5) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20176 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.12.8-1_amd64.deb ... Unpacking python3-minimal (3.12.8-1) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../03-tzdata_2024b-6_all.deb ... Unpacking tzdata (2024b-6) ... Selecting previously unselected package libffi8:amd64. Preparing to unpack .../04-libffi8_3.4.6-1_amd64.deb ... Unpacking libffi8:amd64 (3.4.6-1) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../05-libkrb5support0_1.21.3-3_amd64.deb ... Unpacking libkrb5support0:amd64 (1.21.3-3) ... Selecting previously unselected package libcom-err2:amd64. Preparing to unpack .../06-libcom-err2_1.47.2-1_amd64.deb ... Unpacking libcom-err2:amd64 (1.47.2-1) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../07-libk5crypto3_1.21.3-3_amd64.deb ... Unpacking libk5crypto3:amd64 (1.21.3-3) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../08-libkeyutils1_1.6.3-4_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.3-4) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../09-libkrb5-3_1.21.3-3_amd64.deb ... Unpacking libkrb5-3:amd64 (1.21.3-3) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../10-libgssapi-krb5-2_1.21.3-3_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.21.3-3) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../11-libtirpc-common_1.3.4+ds-1.3_all.deb ... Unpacking libtirpc-common (1.3.4+ds-1.3) ... Selecting previously unselected package libtirpc3t64:amd64. Preparing to unpack .../12-libtirpc3t64_1.3.4+ds-1.3+b1_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ... Selecting previously unselected package libnsl2:amd64. Preparing to unpack .../13-libnsl2_1.3.0-3+b3_amd64.deb ... Unpacking libnsl2:amd64 (1.3.0-3+b3) ... Selecting previously unselected package readline-common. Preparing to unpack .../14-readline-common_8.2-6_all.deb ... Unpacking readline-common (8.2-6) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../15-libreadline8t64_8.2-6_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-6) ... Selecting previously unselected package libpython3.12-stdlib:amd64. Preparing to unpack .../16-libpython3.12-stdlib_3.12.8-5_amd64.deb ... Unpacking libpython3.12-stdlib:amd64 (3.12.8-5) ... Selecting previously unselected package python3.12. Preparing to unpack .../17-python3.12_3.12.8-5_amd64.deb ... Unpacking python3.12 (3.12.8-5) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../18-libpython3-stdlib_3.12.8-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.12.8-1) ... Setting up python3-minimal (3.12.8-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21244 files and directories currently installed.) Preparing to unpack .../00-python3_3.12.8-1_amd64.deb ... Unpacking python3 (3.12.8-1) ... Selecting previously unselected package libpython3.13-minimal:amd64. Preparing to unpack .../01-libpython3.13-minimal_3.13.1-3_amd64.deb ... Unpacking libpython3.13-minimal:amd64 (3.13.1-3) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../02-python3.13-minimal_3.13.1-3_amd64.deb ... Unpacking python3.13-minimal (3.13.1-3) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../03-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../04-libmagic-mgc_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../05-libmagic1t64_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../06-file_1%3a5.45-3+b1_amd64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../07-gettext-base_0.22.5-4_amd64.deb ... Unpacking gettext-base (0.22.5-4) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../08-libuchardet0_0.0.8-1+b2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../09-groff-base_1.23.0-7_amd64.deb ... Unpacking groff-base (1.23.0-7) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../10-bsdextrautils_2.40.4-1_amd64.deb ... Unpacking bsdextrautils (2.40.4-1) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../11-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../12-man-db_2.13.0-1_amd64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../13-m4_1.4.19-5_amd64.deb ... Unpacking m4 (1.4.19-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../14-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../15-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../16-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../17-autopoint_0.22.5-4_all.deb ... Unpacking autopoint (0.22.5-4) ... Selecting previously unselected package bedtools. Preparing to unpack .../18-bedtools_2.31.1+dfsg-2_amd64.deb ... Unpacking bedtools (2.31.1+dfsg-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../19-libdebhelper-perl_13.23_all.deb ... Unpacking libdebhelper-perl (13.23) ... Selecting previously unselected package libtool. Preparing to unpack .../20-libtool_2.5.4-2_all.deb ... Unpacking libtool (2.5.4-2) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../21-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../22-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../23-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../24-dh-strip-nondeterminism_1.14.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.0-1) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../25-libelf1t64_0.192-4_amd64.deb ... Unpacking libelf1t64:amd64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../26-dwz_0.15-1+b1_amd64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libunistring5:amd64. Preparing to unpack .../27-libunistring5_1.3-1_amd64.deb ... Unpacking libunistring5:amd64 (1.3-1) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../28-libicu72_72.1-6_amd64.deb ... Unpacking libicu72:amd64 (72.1-6) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../29-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_amd64.deb ... Unpacking libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../30-gettext_0.22.5-4_amd64.deb ... Unpacking gettext (0.22.5-4) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../31-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../32-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../33-debhelper_13.23_all.deb ... Unpacking debhelper (13.23) ... Selecting previously unselected package python3-autocommand. Preparing to unpack .../34-python3-autocommand_2.2.2-3_all.deb ... Unpacking python3-autocommand (2.2.2-3) ... Selecting previously unselected package python3-more-itertools. Preparing to unpack .../35-python3-more-itertools_10.6.0-1_all.deb ... Unpacking python3-more-itertools (10.6.0-1) ... Selecting previously unselected package python3-typing-extensions. Preparing to unpack .../36-python3-typing-extensions_4.12.2-2_all.deb ... Unpacking python3-typing-extensions (4.12.2-2) ... Selecting previously unselected package python3-typeguard. Preparing to unpack .../37-python3-typeguard_4.4.1-1_all.deb ... Unpacking python3-typeguard (4.4.1-1) ... Selecting previously unselected package python3-inflect. Preparing to unpack .../38-python3-inflect_7.3.1-2_all.deb ... Unpacking python3-inflect (7.3.1-2) ... Selecting previously unselected package python3-jaraco.context. Preparing to unpack .../39-python3-jaraco.context_6.0.0-1_all.deb ... Unpacking python3-jaraco.context (6.0.0-1) ... Selecting previously unselected package python3-jaraco.functools. Preparing to unpack .../40-python3-jaraco.functools_4.1.0-1_all.deb ... Unpacking python3-jaraco.functools (4.1.0-1) ... Selecting previously unselected package python3-pkg-resources. Preparing to unpack .../41-python3-pkg-resources_75.6.0-1_all.deb ... Unpacking python3-pkg-resources (75.6.0-1) ... Selecting previously unselected package python3-jaraco.text. Preparing to unpack .../42-python3-jaraco.text_4.0.0-1_all.deb ... Unpacking python3-jaraco.text (4.0.0-1) ... Selecting previously unselected package python3-zipp. Preparing to unpack .../43-python3-zipp_3.21.0-1_all.deb ... Unpacking python3-zipp (3.21.0-1) ... Selecting previously unselected package python3-setuptools. Preparing to unpack .../44-python3-setuptools_75.6.0-1_all.deb ... Unpacking python3-setuptools (75.6.0-1) ... Selecting previously unselected package dh-python. Preparing to unpack .../45-dh-python_6.20250108_all.deb ... Unpacking dh-python (6.20250108) ... Selecting previously unselected package libblas3:amd64. Preparing to unpack .../46-libblas3_3.12.0-4_amd64.deb ... Unpacking libblas3:amd64 (3.12.0-4) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../47-libbrotli1_1.1.0-2+b6_amd64.deb ... Unpacking libbrotli1:amd64 (1.1.0-2+b6) ... Selecting previously unselected package libidn2-0:amd64. Preparing to unpack .../48-libidn2-0_2.3.7-2+b1_amd64.deb ... Unpacking libidn2-0:amd64 (2.3.7-2+b1) ... Selecting previously unselected package libp11-kit0:amd64. Preparing to unpack .../49-libp11-kit0_0.25.5-3_amd64.deb ... Unpacking libp11-kit0:amd64 (0.25.5-3) ... Selecting previously unselected package libtasn1-6:amd64. Preparing to unpack .../50-libtasn1-6_4.19.0-3+b3_amd64.deb ... Unpacking libtasn1-6:amd64 (4.19.0-3+b3) ... Selecting previously unselected package libgnutls30t64:amd64. Preparing to unpack .../51-libgnutls30t64_3.8.8-2_amd64.deb ... Unpacking libgnutls30t64:amd64 (3.8.8-2) ... Selecting previously unselected package libsasl2-modules-db:amd64. Preparing to unpack .../52-libsasl2-modules-db_2.1.28+dfsg1-8+b1_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.28+dfsg1-8+b1) ... Selecting previously unselected package libsasl2-2:amd64. Preparing to unpack .../53-libsasl2-2_2.1.28+dfsg1-8+b1_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.28+dfsg1-8+b1) ... Selecting previously unselected package libldap2:amd64. Preparing to unpack .../54-libldap2_2.6.9+dfsg-1_amd64.deb ... Unpacking libldap2:amd64 (2.6.9+dfsg-1) ... Selecting previously unselected package libnghttp2-14:amd64. Preparing to unpack .../55-libnghttp2-14_1.64.0-1_amd64.deb ... Unpacking libnghttp2-14:amd64 (1.64.0-1) ... Selecting previously unselected package libnghttp3-9:amd64. Preparing to unpack .../56-libnghttp3-9_1.6.0-2_amd64.deb ... Unpacking libnghttp3-9:amd64 (1.6.0-2) ... Selecting previously unselected package libngtcp2-16:amd64. Preparing to unpack .../57-libngtcp2-16_1.9.1-1_amd64.deb ... Unpacking libngtcp2-16:amd64 (1.9.1-1) ... Selecting previously unselected package libngtcp2-crypto-gnutls8:amd64. Preparing to unpack .../58-libngtcp2-crypto-gnutls8_1.9.1-1_amd64.deb ... Unpacking libngtcp2-crypto-gnutls8:amd64 (1.9.1-1) ... Selecting previously unselected package libpsl5t64:amd64. Preparing to unpack .../59-libpsl5t64_0.21.2-1.1+b1_amd64.deb ... Unpacking libpsl5t64:amd64 (0.21.2-1.1+b1) ... Selecting previously unselected package librtmp1:amd64. Preparing to unpack .../60-librtmp1_2.4+20151223.gitfa8646d.1-2+b5_amd64.deb ... Unpacking librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Selecting previously unselected package libssh2-1t64:amd64. Preparing to unpack .../61-libssh2-1t64_1.11.1-1_amd64.deb ... Unpacking libssh2-1t64:amd64 (1.11.1-1) ... Selecting previously unselected package libcurl3t64-gnutls:amd64. Preparing to unpack .../62-libcurl3t64-gnutls_8.11.1-1+b1_amd64.deb ... Unpacking libcurl3t64-gnutls:amd64 (8.11.1-1+b1) ... Selecting previously unselected package libdeflate0:amd64. Preparing to unpack .../63-libdeflate0_1.23-1+b1_amd64.deb ... Unpacking libdeflate0:amd64 (1.23-1+b1) ... Selecting previously unselected package libgfortran5:amd64. Preparing to unpack .../64-libgfortran5_14.2.0-12_amd64.deb ... Unpacking libgfortran5:amd64 (14.2.0-12) ... Selecting previously unselected package libhtscodecs2:amd64. Preparing to unpack .../65-libhtscodecs2_1.6.1-1_amd64.deb ... Unpacking libhtscodecs2:amd64 (1.6.1-1) ... Selecting previously unselected package libhts3t64:amd64. Preparing to unpack .../66-libhts3t64_1.20+ds-2_amd64.deb ... Unpacking libhts3t64:amd64 (1.20+ds-2) ... Selecting previously unselected package liblapack3:amd64. Preparing to unpack .../67-liblapack3_3.12.0-4_amd64.deb ... Unpacking liblapack3:amd64 (3.12.0-4) ... Selecting previously unselected package libncurses6:amd64. Preparing to unpack .../68-libncurses6_6.5-2+b1_amd64.deb ... Unpacking libncurses6:amd64 (6.5-2+b1) ... Selecting previously unselected package libpython3.13-stdlib:amd64. Preparing to unpack .../69-libpython3.13-stdlib_3.13.1-3_amd64.deb ... Unpacking libpython3.13-stdlib:amd64 (3.13.1-3) ... Selecting previously unselected package python3.13. Preparing to unpack .../70-python3.13_3.13.1-3_amd64.deb ... Unpacking python3.13 (3.13.1-3) ... Selecting previously unselected package python3-all. Preparing to unpack .../71-python3-all_3.12.8-1_amd64.deb ... Unpacking python3-all (3.12.8-1) ... Selecting previously unselected package python3-attr. Preparing to unpack .../72-python3-attr_24.3.0-1_all.deb ... Unpacking python3-attr (24.3.0-1) ... Selecting previously unselected package python3-dateutil. Preparing to unpack .../73-python3-dateutil_2.9.0-3_all.deb ... Unpacking python3-dateutil (2.9.0-3) ... Selecting previously unselected package python3-execnet. Preparing to unpack .../74-python3-execnet_2.1.1-1_all.deb ... Unpacking python3-execnet (2.1.1-1) ... Selecting previously unselected package python3-sortedcontainers. Preparing to unpack .../75-python3-sortedcontainers_2.4.0-2_all.deb ... Unpacking python3-sortedcontainers (2.4.0-2) ... Selecting previously unselected package python3-hypothesis. Preparing to unpack .../76-python3-hypothesis_6.122.1-1_all.deb ... Unpacking python3-hypothesis (6.122.1-1) ... Selecting previously unselected package python3-iniconfig. Preparing to unpack .../77-python3-iniconfig_1.1.1-2_all.deb ... Unpacking python3-iniconfig (1.1.1-2) ... Selecting previously unselected package python3-natsort. Preparing to unpack .../78-python3-natsort_8.0.2-2_all.deb ... Unpacking python3-natsort (8.0.2-2) ... Selecting previously unselected package python3-numpy. Preparing to unpack .../79-python3-numpy_1%3a1.26.4+ds-12_amd64.deb ... Unpacking python3-numpy (1:1.26.4+ds-12) ... Selecting previously unselected package python3-ncls. Preparing to unpack .../80-python3-ncls_0.0.63-hotfix+ds-1+b6_amd64.deb ... Unpacking python3-ncls (0.0.63-hotfix+ds-1+b6) ... Selecting previously unselected package python3-packaging. Preparing to unpack .../81-python3-packaging_24.2-1_all.deb ... Unpacking python3-packaging (24.2-1) ... Selecting previously unselected package python3-tz. Preparing to unpack .../82-python3-tz_2024.2-1_all.deb ... Unpacking python3-tz (2024.2-1) ... Selecting previously unselected package python3-pandas-lib:amd64. Preparing to unpack .../83-python3-pandas-lib_2.2.3+dfsg-5+b1_amd64.deb ... Unpacking python3-pandas-lib:amd64 (2.2.3+dfsg-5+b1) ... Selecting previously unselected package python3-pandas. Preparing to unpack .../84-python3-pandas_2.2.3+dfsg-5_all.deb ... Unpacking python3-pandas (2.2.3+dfsg-5) ... Selecting previously unselected package python3-pluggy. Preparing to unpack .../85-python3-pluggy_1.5.0-1_all.deb ... Unpacking python3-pluggy (1.5.0-1) ... Selecting previously unselected package python3-tabulate. Preparing to unpack .../86-python3-tabulate_0.9.0-1_all.deb ... Unpacking python3-tabulate (0.9.0-1) ... Selecting previously unselected package python3-pyrle. Preparing to unpack .../87-python3-pyrle_0.0.33-4.1+b2_amd64.deb ... Unpacking python3-pyrle (0.0.33-4.1+b2) ... Selecting previously unselected package python3-pytest. Preparing to unpack .../88-python3-pytest_8.3.4-1_all.deb ... Unpacking python3-pytest (8.3.4-1) ... Selecting previously unselected package python3-pytest-xdist. Preparing to unpack .../89-python3-pytest-xdist_3.6.1-1_all.deb ... Unpacking python3-pytest-xdist (3.6.1-1) ... Selecting previously unselected package python3-sorted-nearest. Preparing to unpack .../90-python3-sorted-nearest_0.0.39+dfsg-3_amd64.deb ... Unpacking python3-sorted-nearest (0.0.39+dfsg-3) ... Selecting previously unselected package samtools. Preparing to unpack .../91-samtools_1.20-3_amd64.deb ... Unpacking samtools (1.20-3) ... Setting up libhtscodecs2:amd64 (1.6.1-1) ... Setting up media-types (10.1.0) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up libkeyutils1:amd64 (1.6.3-4) ... Setting up libicu72:amd64 (72.1-6) ... Setting up bsdextrautils (2.40.4-1) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libtirpc-common (1.3.4+ds-1.3) ... Setting up libdebhelper-perl (13.23) ... Setting up libbrotli1:amd64 (1.1.0-2+b6) ... Setting up libmagic1t64:amd64 (1:5.45-3+b1) ... Setting up libnghttp2-14:amd64 (1.64.0-1) ... Setting up libdeflate0:amd64 (1.23-1+b1) ... Setting up gettext-base (0.22.5-4) ... Setting up m4 (1.4.19-5) ... Setting up libcom-err2:amd64 (1.47.2-1) ... Setting up file (1:5.45-3+b1) ... Setting up libelf1t64:amd64 (0.192-4) ... Setting up libkrb5support0:amd64 (1.21.3-3) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-8+b1) ... Setting up tzdata (2024b-6) ... Current default time zone: 'Etc/UTC' Local time is now: Tue Feb 24 15:19:46 UTC 2026. Universal Time is now: Tue Feb 24 15:19:46 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libpython3.13-minimal:amd64 (3.13.1-3) ... Setting up autotools-dev (20220109.1) ... Setting up libblas3:amd64 (3.12.0-4) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libncurses6:amd64 (6.5-2+b1) ... Setting up libunistring5:amd64 (1.3-1) ... Setting up autopoint (0.22.5-4) ... Setting up libk5crypto3:amd64 (1.21.3-3) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-8+b1) ... Setting up libgfortran5:amd64 (14.2.0-12) ... Setting up autoconf (2.72-3) ... Setting up libnghttp3-9:amd64 (1.6.0-2) ... Setting up libffi8:amd64 (3.4.6-1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:amd64 (0.0.8-1+b2) ... Setting up libtasn1-6:amd64 (4.19.0-3+b3) ... Setting up python3.13-minimal (3.13.1-3) ... Setting up netbase (6.4) ... Setting up libngtcp2-16:amd64 (1.9.1-1) ... Setting up libkrb5-3:amd64 (1.21.3-3) ... Setting up libssh2-1t64:amd64 (1.11.1-1) ... Setting up readline-common (8.2-6) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up bedtools (2.31.1+dfsg-2) ... Setting up libldap2:amd64 (2.6.9+dfsg-1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up liblapack3:amd64 (3.12.0-4) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up gettext (0.22.5-4) ... Setting up libtool (2.5.4-2) ... Setting up libidn2-0:amd64 (2.3.7-2+b1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libp11-kit0:amd64 (0.25.5-3) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-3) ... Setting up libreadline8t64:amd64 (8.2-6) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-7) ... Setting up libpython3.13-stdlib:amd64 (3.13.1-3) ... Setting up libgnutls30t64:amd64 (3.8.8-2) ... Setting up libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ... Setting up python3.13 (3.13.1-3) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpsl5t64:amd64 (0.21.2-1.1+b1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libnsl2:amd64 (1.3.0-3+b3) ... Setting up libngtcp2-crypto-gnutls8:amd64 (1.9.1-1) ... Setting up libpython3.12-stdlib:amd64 (3.12.8-5) ... Setting up python3.12 (3.12.8-5) ... Setting up libcurl3t64-gnutls:amd64 (8.11.1-1+b1) ... Setting up debhelper (13.23) ... Setting up libhts3t64:amd64 (1.20+ds-2) ... Setting up libpython3-stdlib:amd64 (3.12.8-1) ... Setting up python3 (3.12.8-1) ... Setting up python3-sortedcontainers (2.4.0-2) ... Setting up python3-zipp (3.21.0-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up python3-tz (2024.2-1) ... Setting up python3-natsort (8.0.2-2) ... Setting up samtools (1.20-3) ... Setting up python3-packaging (24.2-1) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up python3-pluggy (1.5.0-1) ... Setting up python3-dateutil (2.9.0-3) ... Setting up python3-execnet (2.1.1-1) ... Setting up python3-more-itertools (10.6.0-1) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up python3-attr (24.3.0-1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up python3-pytest (8.3.4-1) ... Setting up python3-hypothesis (6.122.1-1) ... Setting up python3-typeguard (4.4.1-1) ... Setting up python3-tabulate (0.9.0-1) ... Setting up python3-all (3.12.8-1) ... Setting up python3-inflect (7.3.1-2) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-pkg-resources (75.6.0-1) ... Setting up python3-setuptools (75.6.0-1) ... Setting up python3-pytest-xdist (3.6.1-1) ... Setting up python3-numpy (1:1.26.4+ds-12) ... Setting up python3-ncls (0.0.63-hotfix+ds-1+b6) ... Setting up dh-python (6.20250108) ... Setting up python3-pandas-lib:amd64 (2.2.3+dfsg-5+b1) ... Setting up python3-sorted-nearest (0.0.39+dfsg-3) ... Setting up python3-pandas (2.2.3+dfsg-5) ... Setting up python3-pyrle (0.0.33-4.1+b2) ... Processing triggers for libc-bin (2.40-5) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/pyranges-0.0.111+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../pyranges_0.0.111+ds-8_source.changes dpkg-buildpackage: info: source package pyranges dpkg-buildpackage: info: source version 0.0.111+ds-8 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 dpkg-source: info: using options from pyranges-0.0.111+ds/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ debian/rules clean dh clean --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py clean 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.13' does not exist -- can't clean it I: pybuild base:311: python3.12 setup.py clean 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.12' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py config I: pybuild base:311: python3.12 setup.py config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3.13 setup.py build I: pybuild base:311: /usr/bin/python3 setup.py build debian/rules execute_after_dh_auto_build make[1]: Entering directory '/build/reproducible-path/pyranges-0.0.111+ds' echo 'Generating corresponding files ...' Generating corresponding files ... cat debian/missing-sources/test_sorted.sam| samtools view -Sb - > tests/test_data/test_sorted.bam cat debian/missing-sources/control.sam| samtools view -Sb - > pyranges/example_data/control.bam samtools index tests/test_data/test_sorted.bam tests/test_data/test_sorted.bam.bai samtools index pyranges/example_data/control.bam pyranges/example_data/control.bam.bai make[1]: Leaving directory '/build/reproducible-path/pyranges-0.0.111+ds' dh_auto_test -O--buildsystem=pybuild I: pybuild pybuild:308: mkdir -pv /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges && cp -av /build/reproducible-path/pyranges-0.0.111+ds/tests/*.bed /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests && cp -av /build/reproducible-path/pyranges-0.0.111+ds/tests/test_data /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests && cp -av /build/reproducible-path/pyranges-0.0.111+ds/tests/data /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests && cp -av /build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges '/build/reproducible-path/pyranges-0.0.111+ds/tests/chip_10.bed' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/chip_10.bed' '/build/reproducible-path/pyranges-0.0.111+ds/tests/f1.bed' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/f1.bed' '/build/reproducible-path/pyranges-0.0.111+ds/tests/f2.bed' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/f2.bed' '/build/reproducible-path/pyranges-0.0.111+ds/tests/test_data' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_data' '/build/reproducible-path/pyranges-0.0.111+ds/tests/test_data/test_sorted.bam' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_data/test_sorted.bam' '/build/reproducible-path/pyranges-0.0.111+ds/tests/test_data/test_sorted.bam.bai' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_data/test_sorted.bam.bai' '/build/reproducible-path/pyranges-0.0.111+ds/tests/test_data/ensembl.gtf' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_data/ensembl.gtf' '/build/reproducible-path/pyranges-0.0.111+ds/tests/test_data/gencode.gff3' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_data/gencode.gff3' '/build/reproducible-path/pyranges-0.0.111+ds/tests/test_data/ucsc_df_to_parse.txt' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_data/ucsc_df_to_parse.txt' '/build/reproducible-path/pyranges-0.0.111+ds/tests/data' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/data' '/build/reproducible-path/pyranges-0.0.111+ds/tests/data/test_data.py' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/data/test_data.py' '/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/control.bam' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/example_data/control.bam' '/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/control.bam.bai' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/example_data/control.bam.bai' '/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/exons.bed' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/example_data/exons.bed' '/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/ensembl.gtf' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/example_data/ensembl.gtf' '/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/ucsc_human.bed.gz' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/example_data/ucsc_human.bed.gz' '/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/chipseq_background.bed' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/example_data/chipseq_background.bed' '/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/f2.bed' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/example_data/f2.bed' '/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/bw.bw' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/example_data/bw.bw' '/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/f1.bed' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/example_data/f1.bed' '/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/cpg.bed' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/example_data/cpg.bed' '/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/lamina.bed' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/example_data/lamina.bed' '/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/gencode_human.gtf.gz' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/example_data/gencode_human.gtf.gz' '/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/chipseq.bed' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/example_data/chipseq.bed' '/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/aorta.bed' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/example_data/aorta.bed' '/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/ensembl_human.gtf.gz' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/example_data/ensembl_human.gtf.gz' '/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/chromsizes.bed' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/example_data/chromsizes.bed' '/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/aorta2.bed' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/example_data/aorta2.bed' I: pybuild base:311: cd /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build; python3.13 -m pytest -v -n 42 ============================= test session starts ============================== platform linux -- Python 3.13.1, pytest-8.3.4, pluggy-1.5.0 -- /usr/bin/python3.13 cachedir: .pytest_cache hypothesis profile 'default' -> database=DirectoryBasedExampleDatabase(PosixPath('/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/.hypothesis/examples')) rootdir: /build/reproducible-path/pyranges-0.0.111+ds plugins: hypothesis-6.122.1, typeguard-4.4.1, xdist-3.6.1 created: 42/42 workers 42 workers [531 items] scheduling tests via LoadScheduling tests/test_binary.py::test_nearest[upstream-True-same] tests/test_binary.py::test_coverage[same] tests/data/test_data.py::test_all_data tests/test_binary.py::test_intersect[same] tests/test_binary.py::test_k_nearest[upstream-False-same-last] tests/test_binary.py::test_set_union[False] tests/test_concat.py::test_concat_unstranded_stranded tests/test_binary.py::test_k_nearest[upstream-True-same-last] tests/test_binary.py::test_nearest[None-True-same] tests/test_binary.py::test_nearest[None-False-same] tests/test_binary.py::test_join[opposite] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain10-method_chain10] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain13-method_chain13] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain4-method_chain4] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain16-method_chain16] tests/test_binary.py::test_nearest[upstream-False-same] tests/test_change_chromosome_custom.py::test_change_chromosomes tests/test_binary.py::test_jaccard[same] tests/test_binary.py::test_k_nearest[None-True-same-last] tests/test_binary.py::test_nearest[downstream-False-same] tests/test_binary.py::test_k_nearest[downstream-True-same-last] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain22-method_chain22] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain7-method_chain7] tests/test_binary.py::test_nearest[downstream-True-same] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain19-method_chain19] tests/test_binary.py::test_k_nearest[None-False-same-last] tests/test_binary.py::test_subtraction[opposite] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain1-method_chain1] tests/test_binary.py::test_overlap[same] tests/test_binary.py::test_k_nearest[downstream-False-same-last] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain25-method_chain25] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain34-method_chain34] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain43-method_chain43] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain31-method_chain31] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain37-method_chain37] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain28-method_chain28] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain40-method_chain40] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain46-method_chain46] [gw21] [ 0%] PASSED tests/test_change_chromosome_custom.py::test_change_chromosomes tests/test_concat.py::test_concat_stranded_unstranded tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain52-method_chain52] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain58-method_chain58] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain49-method_chain49] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain55-method_chain55] [gw22] [ 0%] PASSED tests/test_concat.py::test_concat_unstranded_stranded tests/test_count_overlaps.py::test_strand_vs_strand_same [gw21] [ 0%] PASSED tests/test_concat.py::test_concat_stranded_unstranded tests/test_concat.py::test_concat_unstranded_unstranded [gw21] [ 0%] PASSED tests/test_concat.py::test_concat_unstranded_unstranded tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain61-method_chain61] [gw22] [ 0%] PASSED tests/test_count_overlaps.py::test_strand_vs_strand_same tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain0-method_chain0] [gw0] [ 1%] PASSED tests/data/test_data.py::test_all_data tests/test_binary.py::test_set_intersect[False] [gw26] [ 1%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain16-method_chain16] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain17-method_chain17] [gw38] [ 1%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain46-method_chain46] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain47-method_chain47] [gw34] [ 1%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain34-method_chain34] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain35-method_chain35] [gw30] [ 1%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain25-method_chain25] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain26-method_chain26] [gw33] [ 2%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain31-method_chain31] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain32-method_chain32] [gw37] [ 2%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain43-method_chain43] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain44-method_chain44] [gw27] [ 2%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain13-method_chain13] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain14-method_chain14] [gw29] [ 2%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain19-method_chain19] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain20-method_chain20] [gw41] [ 2%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain58-method_chain58] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain59-method_chain59] [gw25] [ 3%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain10-method_chain10] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain11-method_chain11] [gw28] [ 3%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain22-method_chain22] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain23-method_chain23] [gw31] [ 3%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain28-method_chain28] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain29-method_chain29] [gw21] [ 3%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain61-method_chain61] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain62-method_chain62] [gw32] [ 3%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain37-method_chain37] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain38-method_chain38] [gw40] [ 3%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain55-method_chain55] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain56-method_chain56] [gw20] [ 4%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain1-method_chain1] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain2-method_chain2] [gw23] [ 4%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain4-method_chain4] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain5-method_chain5] [gw24] [ 4%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain7-method_chain7] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain8-method_chain8] [gw36] [ 4%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain49-method_chain49] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain50-method_chain50] [gw35] [ 4%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain40-method_chain40] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain41-method_chain41] [gw39] [ 5%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain52-method_chain52] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain53-method_chain53] [gw22] [ 5%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain0-method_chain0] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain64-method_chain64] [gw26] [ 5%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain17-method_chain17] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain18-method_chain18] [gw38] [ 5%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain47-method_chain47] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain48-method_chain48] [gw33] [ 5%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain32-method_chain32] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain33-method_chain33] [gw29] [ 6%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain20-method_chain20] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain21-method_chain21] [gw37] [ 6%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain44-method_chain44] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain45-method_chain45] [gw28] [ 6%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain23-method_chain23] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain24-method_chain24] [gw27] [ 6%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain14-method_chain14] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain15-method_chain15] [gw41] [ 6%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain59-method_chain59] [gw30] [ 6%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain26-method_chain26] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain60-method_chain60] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain27-method_chain27] [gw31] [ 7%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain29-method_chain29] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain30-method_chain30] [gw25] [ 7%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain11-method_chain11] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain12-method_chain12] [gw21] [ 7%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain62-method_chain62] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain63-method_chain63] [gw20] [ 7%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain2-method_chain2] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain3-method_chain3] [gw24] [ 7%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain8-method_chain8] [gw22] [ 8%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain64-method_chain64] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain9-method_chain9] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain65-method_chain65] [gw34] [ 8%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain35-method_chain35] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain36-method_chain36] [gw32] [ 8%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain38-method_chain38] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain39-method_chain39] [gw26] [ 8%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain18-method_chain18] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain67-method_chain67] [gw40] [ 8%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain56-method_chain56] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain57-method_chain57] [gw36] [ 9%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain50-method_chain50] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain51-method_chain51] [gw38] [ 9%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain48-method_chain48] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain70-method_chain70] [gw33] [ 9%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain33-method_chain33] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain73-method_chain73] [gw37] [ 9%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain45-method_chain45] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain79-method_chain79] [gw39] [ 9%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain53-method_chain53] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain54-method_chain54] [gw35] [ 9%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain41-method_chain41] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain42-method_chain42] [gw28] [ 10%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain24-method_chain24] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain82-method_chain82] [gw27] [ 10%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain15-method_chain15] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain85-method_chain85] [gw31] [ 10%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain30-method_chain30] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain94-method_chain94] [gw30] [ 10%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain27-method_chain27] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain91-method_chain91] [gw23] [ 10%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain5-method_chain5] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain6-method_chain6] [gw41] [ 11%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain60-method_chain60] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain88-method_chain88] [gw29] [ 11%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain21-method_chain21] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain76-method_chain76] [gw22] [ 11%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain65-method_chain65] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain66-method_chain66] [gw21] [ 11%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain63-method_chain63] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain100-method_chain100] [gw26] [ 11%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain67-method_chain67] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain68-method_chain68] [gw24] [ 12%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain9-method_chain9] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain106-method_chain106] [gw25] [ 12%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain12-method_chain12] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain97-method_chain97] [gw32] [ 12%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain39-method_chain39] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain112-method_chain112] [gw37] [ 12%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain79-method_chain79] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain80-method_chain80] [gw36] [ 12%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain51-method_chain51] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain118-method_chain118] [gw20] [ 12%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain3-method_chain3] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain103-method_chain103] [gw40] [ 13%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain57-method_chain57] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain115-method_chain115] [gw34] [ 13%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain36-method_chain36] [gw33] [ 13%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain73-method_chain73] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain109-method_chain109] [gw38] [ 13%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain70-method_chain70] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain74-method_chain74] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain71-method_chain71] [gw28] [ 13%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain82-method_chain82] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain83-method_chain83] [gw35] [ 14%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain42-method_chain42] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain124-method_chain124] [gw31] [ 14%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain94-method_chain94] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain95-method_chain95] [gw22] [ 14%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain66-method_chain66] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain130-method_chain130] [gw29] [ 14%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain76-method_chain76] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain77-method_chain77] [gw30] [ 14%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain91-method_chain91] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain92-method_chain92] [gw23] [ 15%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain6-method_chain6] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain127-method_chain127] [gw24] [ 15%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain106-method_chain106] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain107-method_chain107] [gw26] [ 15%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain68-method_chain68] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain69-method_chain69] [gw21] [ 15%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain100-method_chain100] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain101-method_chain101] [gw41] [ 15%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain88-method_chain88] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain89-method_chain89] [gw25] [ 16%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain97-method_chain97] [gw27] [ 16%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain85-method_chain85] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain98-method_chain98] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain86-method_chain86] [gw37] [ 16%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain80-method_chain80] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain81-method_chain81] [gw36] [ 16%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain118-method_chain118] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain119-method_chain119] [gw40] [ 16%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain115-method_chain115] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain116-method_chain116] [gw39] [ 16%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain54-method_chain54] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain121-method_chain121] [gw33] [ 17%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain74-method_chain74] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain75-method_chain75] [gw38] [ 17%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain71-method_chain71] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain72-method_chain72] [gw32] [ 17%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain112-method_chain112] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain113-method_chain113] [gw31] [ 17%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain95-method_chain95] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain96-method_chain96] [gw34] [ 17%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain109-method_chain109] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain110-method_chain110] [gw28] [ 18%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain83-method_chain83] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain84-method_chain84] [gw35] [ 18%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain124-method_chain124] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain125-method_chain125] [gw22] [ 18%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain130-method_chain130] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain131-method_chain131] [gw30] [ 18%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain92-method_chain92] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain93-method_chain93] [gw26] [ 18%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain69-method_chain69] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain133-method_chain133] [gw29] [ 19%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain77-method_chain77] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain78-method_chain78] [gw23] [ 19%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain127-method_chain127] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain128-method_chain128] [gw37] [ 19%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain81-method_chain81] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain135-method_chain135] [gw40] [ 19%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain116-method_chain116] [gw24] [ 19%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain107-method_chain107] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain117-method_chain117] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain108-method_chain108] [gw20] [ 19%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain103-method_chain103] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain104-method_chain104] [gw21] [ 20%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain101-method_chain101] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain102-method_chain102] [gw39] [ 20%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain121-method_chain121] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain122-method_chain122] [gw38] [ 20%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain72-method_chain72] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain139-method_chain139] [gw32] [ 20%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain113-method_chain113] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain114-method_chain114] [gw36] [ 20%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain119-method_chain119] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain120-method_chain120] [gw31] [ 21%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain96-method_chain96] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain141-method_chain141] [gw33] [ 21%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain75-method_chain75] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain137-method_chain137] [gw30] [ 21%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain93-method_chain93] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain145-method_chain145] [gw41] [ 21%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain89-method_chain89] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain90-method_chain90] [gw27] [ 21%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain86-method_chain86] [gw35] [ 22%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain125-method_chain125] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain87-method_chain87] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain126-method_chain126] [gw25] [ 22%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain98-method_chain98] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain99-method_chain99] [gw22] [ 22%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain131-method_chain131] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain132-method_chain132] [gw34] [ 22%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain110-method_chain110] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain111-method_chain111] [gw23] [ 22%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain128-method_chain128] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain129-method_chain129] [gw29] [ 22%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain78-method_chain78] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain147-method_chain147] [gw40] [ 23%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain117-method_chain117] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain149-method_chain149] [gw28] [ 23%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain84-method_chain84] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain143-method_chain143] [gw20] [ 23%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain104-method_chain104] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain105-method_chain105] [gw24] [ 23%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain108-method_chain108] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain151-method_chain151] [gw32] [ 23%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain114-method_chain114] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain155-method_chain155] [gw39] [ 24%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain122-method_chain122] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain123-method_chain123] [gw21] [ 24%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain102-method_chain102] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain153-method_chain153] [gw37] [ 24%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain135-method_chain135] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain136-method_chain136] [gw31] [ 24%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain141-method_chain141] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain142-method_chain142] [gw38] [ 24%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain139-method_chain139] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain140-method_chain140] [gw30] [ 25%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain145-method_chain145] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain146-method_chain146] [gw36] [ 25%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain120-method_chain120] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain157-method_chain157] [gw26] [ 25%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain133-method_chain133] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain134-method_chain134] [gw22] [ 25%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain132-method_chain132] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain167-method_chain167] [gw23] [ 25%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain129-method_chain129] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain171-method_chain171] [gw34] [ 25%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain111-method_chain111] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain169-method_chain169] [gw41] [ 26%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain90-method_chain90] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain159-method_chain159] [gw33] [ 26%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain137-method_chain137] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain138-method_chain138] [gw35] [ 26%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain126-method_chain126] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain163-method_chain163] [gw27] [ 26%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain87-method_chain87] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain161-method_chain161] [gw25] [ 26%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain99-method_chain99] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain165-method_chain165] [gw28] [ 27%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain143-method_chain143] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain144-method_chain144] [gw39] [ 27%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain123-method_chain123] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain175-method_chain175] [gw32] [ 27%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain155-method_chain155] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain156-method_chain156] [gw31] [ 27%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain142-method_chain142] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain179-method_chain179] [gw40] [ 27%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain149-method_chain149] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain150-method_chain150] [gw30] [ 28%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain146-method_chain146] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain183-method_chain183] [gw20] [ 28%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain105-method_chain105] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain173-method_chain173] [gw22] [ 28%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain167-method_chain167] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain168-method_chain168] [gw24] [ 28%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain151-method_chain151] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain152-method_chain152] [gw21] [ 28%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain153-method_chain153] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain154-method_chain154] [gw34] [ 29%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain169-method_chain169] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain170-method_chain170] [gw38] [ 29%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain140-method_chain140] [gw29] [ 29%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain147-method_chain147] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain181-method_chain181] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain148-method_chain148] [gw36] [ 29%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain157-method_chain157] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain158-method_chain158] [gw37] [ 29%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain136-method_chain136] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain177-method_chain177] [gw23] [ 29%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain171-method_chain171] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain172-method_chain172] [gw35] [ 30%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain163-method_chain163] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain164-method_chain164] [gw41] [ 30%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain159-method_chain159] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain160-method_chain160] [gw25] [ 30%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain165-method_chain165] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain166-method_chain166] [gw28] [ 30%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain144-method_chain144] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain189-method_chain189] [gw27] [ 30%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain161-method_chain161] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain162-method_chain162] [gw26] [ 31%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain134-method_chain134] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain185-method_chain185] [gw31] [ 31%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain179-method_chain179] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain180-method_chain180] [gw39] [ 31%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain175-method_chain175] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain176-method_chain176] [gw33] [ 31%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain138-method_chain138] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain187-method_chain187] [gw34] [ 31%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain170-method_chain170] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain201-method_chain201] [gw32] [ 32%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain156-method_chain156] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain191-method_chain191] [gw38] [ 32%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain181-method_chain181] [gw14] [ 32%] PASSED tests/test_binary.py::test_join[opposite] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain182-method_chain182] tests/test_binary.py::test_reldist [gw23] [ 32%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain172-method_chain172] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain207-method_chain207] [gw20] [ 32%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain173-method_chain173] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain174-method_chain174] [gw40] [ 32%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain150-method_chain150] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain193-method_chain193] [gw35] [ 33%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain164-method_chain164] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain209-method_chain209] [gw37] [ 33%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain177-method_chain177] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain178-method_chain178] [gw22] [ 33%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain168-method_chain168] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain195-method_chain195] [gw36] [ 33%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain158-method_chain158] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain205-method_chain205] [gw25] [ 33%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain166-method_chain166] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain213-method_chain213] [gw41] [ 34%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain160-method_chain160] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain211-method_chain211] [gw30] [ 34%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain183-method_chain183] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain184-method_chain184] [gw27] [ 34%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain162-method_chain162] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain215-method_chain215] [gw39] [ 34%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain176-method_chain176] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain217-method_chain217] [gw29] [ 34%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain148-method_chain148] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain203-method_chain203] [gw28] [ 35%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain189-method_chain189] [gw3] [ 35%] PASSED tests/test_binary.py::test_intersect[same] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain190-method_chain190] [gw31] [ 35%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain180-method_chain180] tests/test_binary.py::test_intersect[opposite] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain216-method_chain216] [gw2] [ 35%] PASSED tests/test_binary.py::test_overlap[same] tests/test_binary.py::test_overlap[opposite] [gw21] [ 35%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain154-method_chain154] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain199-method_chain199] [gw24] [ 35%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain152-method_chain152] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain197-method_chain197] [gw26] [ 36%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain185-method_chain185] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain186-method_chain186] [gw32] [ 36%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain191-method_chain191] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain192-method_chain192] [gw37] [ 36%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain178-method_chain178] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain220-method_chain220] [gw23] [ 36%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain207-method_chain207] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain208-method_chain208] [gw40] [ 36%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain193-method_chain193] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain194-method_chain194] [gw20] [ 37%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain174-method_chain174] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain219-method_chain219] [gw9] [ 37%] PASSED tests/test_binary.py::test_nearest[upstream-False-same] [gw35] [ 37%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain209-method_chain209] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain210-method_chain210] [gw22] [ 37%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain195-method_chain195] tests/test_binary.py::test_nearest[upstream-False-opposite] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain196-method_chain196] [gw25] [ 37%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain213-method_chain213] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain214-method_chain214] [gw36] [ 38%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain205-method_chain205] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain206-method_chain206] [gw41] [ 38%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain211-method_chain211] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain212-method_chain212] [gw27] [ 38%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain215-method_chain215] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain222-method_chain222] [gw31] [ 38%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain216-method_chain216] [gw38] [ 38%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain182-method_chain182] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain225-method_chain225] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain218-method_chain218] [gw28] [ 38%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain190-method_chain190] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain224-method_chain224] [gw39] [ 39%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain217-method_chain217] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain223-method_chain223] [gw33] [ 39%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain187-method_chain187] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain188-method_chain188] [gw30] [ 39%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain184-method_chain184] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain221-method_chain221] [gw29] [ 39%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain203-method_chain203] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain204-method_chain204] [gw11] [ 39%] PASSED tests/test_binary.py::test_nearest[downstream-False-same] [gw34] [ 40%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain201-method_chain201] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain202-method_chain202] tests/test_binary.py::test_nearest[downstream-False-opposite] [gw32] [ 40%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain192-method_chain192] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain227-method_chain227] [gw20] [ 40%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain219-method_chain219] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain231-method_chain231] [gw40] [ 40%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain194-method_chain194] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain230-method_chain230] [gw37] [ 40%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain220-method_chain220] [gw25] [ 41%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain214-method_chain214] [gw13] [ 41%] PASSED tests/test_binary.py::test_jaccard[same] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain228-method_chain228] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain234-method_chain234] tests/test_binary.py::test_join[False] [gw35] [ 41%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain210-method_chain210] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain232-method_chain232] [gw41] [ 41%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain212-method_chain212] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain236-method_chain236] [gw23] [ 41%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain208-method_chain208] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain229-method_chain229] [gw26] [ 41%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain186-method_chain186] [gw21] [ 42%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain199-method_chain199] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain226-method_chain226] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain200-method_chain200] [gw36] [ 42%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain206-method_chain206] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain235-method_chain235] [gw7] [ 42%] PASSED tests/test_binary.py::test_nearest[None-False-same] [gw24] [ 42%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain197-method_chain197] [gw31] [ 42%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain225-method_chain225] tests/test_binary.py::test_nearest[None-False-opposite] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain238-method_chain238] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain198-method_chain198] [gw39] [ 43%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain223-method_chain223] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain241-method_chain241] [gw28] [ 43%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain224-method_chain224] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain240-method_chain240] [gw38] [ 43%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain218-method_chain218] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain239-method_chain239] [gw30] [ 43%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain221-method_chain221] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain243-method_chain243] [gw0] [ 43%] PASSED tests/test_binary.py::test_set_intersect[False] tests/test_binary.py::test_set_intersect[same] [gw27] [ 44%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain222-method_chain222] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain237-method_chain237] [gw37] [ 44%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain228-method_chain228] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain249-method_chain249] [gw22] [ 44%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain196-method_chain196] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain233-method_chain233] [gw29] [ 44%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain204-method_chain204] [gw32] [ 44%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain227-method_chain227] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain244-method_chain244] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain246-method_chain246] [gw8] [ 45%] PASSED tests/test_binary.py::test_nearest[upstream-True-same] [gw40] [ 45%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain230-method_chain230] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain248-method_chain248] tests/test_binary.py::test_nearest[upstream-True-opposite] [gw33] [ 45%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain188-method_chain188] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain242-method_chain242] [gw23] [ 45%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain229-method_chain229] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain253-method_chain253] [gw6] [ 45%] PASSED tests/test_binary.py::test_nearest[None-True-same] [gw26] [ 45%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain226-method_chain226] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain254-method_chain254] tests/test_binary.py::test_nearest[None-True-opposite] [gw10] [ 46%] PASSED tests/test_binary.py::test_nearest[downstream-True-same] [gw34] [ 46%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain202-method_chain202] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain245-method_chain245] tests/test_binary.py::test_nearest[downstream-True-opposite] [gw28] [ 46%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain240-method_chain240] [gw20] [ 46%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain231-method_chain231] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain260-method_chain260] [gw39] [ 46%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain241-method_chain241] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain247-method_chain247] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain259-method_chain259] [gw38] [ 47%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain239-method_chain239] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain261-method_chain261] [gw25] [ 47%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain234-method_chain234] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain250-method_chain250] [gw16] [ 47%] PASSED tests/test_binary.py::test_k_nearest[upstream-False-same-last] tests/test_binary.py::test_k_nearest[upstream-False-False-last] [gw31] [ 47%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain238-method_chain238] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain257-method_chain257] [gw30] [ 47%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain243-method_chain243] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain262-method_chain262] [gw36] [ 48%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain235-method_chain235] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain256-method_chain256] [gw21] [ 48%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain200-method_chain200] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain255-method_chain255] [gw35] [ 48%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain232-method_chain232] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain251-method_chain251] [gw29] [ 48%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain244-method_chain244] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain267-method_chain267] [gw24] [ 48%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain198-method_chain198] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain258-method_chain258] [gw27] [ 48%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain237-method_chain237] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain264-method_chain264] [gw33] [ 49%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain242-method_chain242] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain270-method_chain270] [gw37] [ 49%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain249-method_chain249] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain265-method_chain265] [gw41] [ 49%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain236-method_chain236] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain252-method_chain252] [gw12] [ 49%] PASSED tests/test_binary.py::test_k_nearest[downstream-False-same-last] [gw22] [ 49%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain233-method_chain233] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain266-method_chain266] tests/test_binary.py::test_k_nearest[downstream-False-False-last] [gw23] [ 50%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain253-method_chain253] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain271-method_chain271] [gw40] [ 50%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain248-method_chain248] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain269-method_chain269] [gw38] [ 50%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain261-method_chain261] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain277-method_chain277] [gw28] [ 50%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain260-method_chain260] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain274-method_chain274] [gw26] [ 50%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain254-method_chain254] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain272-method_chain272] [gw32] [ 51%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain246-method_chain246] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain268-method_chain268] [gw30] [ 51%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain262-method_chain262] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain280-method_chain280] [gw20] [ 51%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain247-method_chain247] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain275-method_chain275] [gw39] [ 51%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain259-method_chain259] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain276-method_chain276] [gw36] [ 51%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain256-method_chain256] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain281-method_chain281] [gw21] [ 51%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain255-method_chain255] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain282-method_chain282] [gw29] [ 52%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain267-method_chain267] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain284-method_chain284] [gw24] [ 52%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain258-method_chain258] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain285-method_chain285] [gw27] [ 52%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain264-method_chain264] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain286-method_chain286] [gw33] [ 52%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain270-method_chain270] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain287-method_chain287] [gw31] [ 52%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain257-method_chain257] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain279-method_chain279] [gw37] [ 53%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain265-method_chain265] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain288-method_chain288] [gw19] [ 53%] PASSED tests/test_binary.py::test_k_nearest[None-False-same-last] tests/test_binary.py::test_k_nearest[None-False-False-last] [gw34] [ 53%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain245-method_chain245] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain273-method_chain273] [gw35] [ 53%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain251-method_chain251] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain283-method_chain283] [gw38] [ 53%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain277-method_chain277] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain293-method_chain293] [gw40] [ 54%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain269-method_chain269] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain292-method_chain292] [gw32] [ 54%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain268-method_chain268] [gw28] [ 54%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain274-method_chain274] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain296-method_chain296] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain294-method_chain294] [gw26] [ 54%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain272-method_chain272] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain295-method_chain295] [gw25] [ 54%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain250-method_chain250] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain278-method_chain278] [gw23] [ 54%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain271-method_chain271] [gw22] [ 55%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain266-method_chain266] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain291-method_chain291] [gw20] [ 55%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain275-method_chain275] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain290-method_chain290] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain298-method_chain298] [gw41] [ 55%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain252-method_chain252] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain289-method_chain289] [gw39] [ 55%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain276-method_chain276] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain299-method_chain299] [gw1] [ 55%] PASSED tests/test_binary.py::test_set_union[False] [gw31] [ 56%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain279-method_chain279] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain306-method_chain306] [gw37] [ 56%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain288-method_chain288] tests/test_binary.py::test_set_union[same] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain307-method_chain307] [gw21] [ 56%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain282-method_chain282] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain301-method_chain301] [gw38] [ 56%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain293-method_chain293] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain310-method_chain310] [gw29] [ 56%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain284-method_chain284] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain302-method_chain302] [gw33] [ 57%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain287-method_chain287] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain305-method_chain305] [gw27] [ 57%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain286-method_chain286] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain304-method_chain304] [gw34] [ 57%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain273-method_chain273] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain308-method_chain308] [gw30] [ 57%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain280-method_chain280] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain297-method_chain297] [gw40] [ 57%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain292-method_chain292] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain311-method_chain311] [gw36] [ 58%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain281-method_chain281] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain300-method_chain300] [gw4] [ 58%] PASSED tests/test_binary.py::test_coverage[same] [gw23] [ 58%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain291-method_chain291] tests/test_binary.py::test_coverage[opposite] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain316-method_chain316] [gw41] [ 58%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain289-method_chain289] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain319-method_chain319] [gw22] [ 58%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain290-method_chain290] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain317-method_chain317] [gw24] [ 58%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain285-method_chain285] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain303-method_chain303] [gw25] [ 59%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain278-method_chain278] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain315-method_chain315] [gw35] [ 59%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain283-method_chain283] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain309-method_chain309] [gw32] [ 59%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain296-method_chain296] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain312-method_chain312] [gw38] [ 59%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain310-method_chain310] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain324-method_chain324] [gw26] [ 59%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain295-method_chain295] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain314-method_chain314] [gw28] [ 60%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain294-method_chain294] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain313-method_chain313] [gw20] [ 60%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain298-method_chain298] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain318-method_chain318] [gw31] [ 60%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain306-method_chain306] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain321-method_chain321] [gw33] [ 60%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain305-method_chain305] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain326-method_chain326] [gw29] [ 60%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain302-method_chain302] [gw37] [ 61%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain307-method_chain307] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain325-method_chain325] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain322-method_chain322] [gw21] [ 61%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain301-method_chain301] [gw40] [ 61%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain311-method_chain311] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain323-method_chain323] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain330-method_chain330] [gw27] [ 61%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain304-method_chain304] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain327-method_chain327] [gw39] [ 61%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain299-method_chain299] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain320-method_chain320] [gw17] [ 61%] PASSED tests/test_binary.py::test_k_nearest[upstream-True-same-last] [gw15] [ 62%] PASSED tests/test_binary.py::test_k_nearest[downstream-True-same-last] [gw5] [ 62%] PASSED tests/test_binary.py::test_subtraction[opposite] tests/test_binary.py::test_k_nearest[upstream-True-False-last] [gw41] [ 62%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain319-method_chain319] tests/test_binary.py::test_k_nearest[downstream-True-False-last] [gw34] [ 62%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain308-method_chain308] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain333-method_chain333] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain328-method_chain328] tests/test_binary.py::test_subtraction[False] [gw22] [ 62%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain317-method_chain317] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain334-method_chain334] [gw23] [ 63%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain316-method_chain316] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain332-method_chain332] [gw36] [ 63%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain300-method_chain300] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain331-method_chain331] [gw30] [ 63%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain297-method_chain297] [gw32] [ 63%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain312-method_chain312] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain338-method_chain338] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain329-method_chain329] [gw24] [ 63%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain303-method_chain303] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain335-method_chain335] [gw35] [ 64%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain309-method_chain309] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain337-method_chain337] [gw38] [ 64%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain324-method_chain324] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain339-method_chain339] [gw25] [ 64%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain315-method_chain315] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain336-method_chain336] [gw33] [ 64%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain326-method_chain326] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain344-method_chain344] [gw26] [ 64%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain314-method_chain314] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain340-method_chain340] [gw14] [ 64%] PASSED tests/test_binary.py::test_reldist [gw29] [ 65%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain325-method_chain325] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain345-method_chain345] tests/test_binary.py::test_k_nearest[downstream-False-opposite-last] [gw28] [ 65%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain313-method_chain313] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain341-method_chain341] [gw31] [ 65%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain321-method_chain321] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain343-method_chain343] [gw20] [ 65%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain318-method_chain318] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain342-method_chain342] [gw27] [ 65%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain327-method_chain327] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain349-method_chain349] [gw37] [ 66%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain322-method_chain322] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain346-method_chain346] [gw21] [ 66%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain323-method_chain323] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain347-method_chain347] [gw34] [ 66%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain328-method_chain328] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain352-method_chain352] [gw32] [ 66%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain338-method_chain338] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain357-method_chain357] [gw39] [ 66%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain320-method_chain320] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain350-method_chain350] [gw40] [ 67%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain330-method_chain330] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain348-method_chain348] [gw36] [ 67%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain331-method_chain331] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain355-method_chain355] [gw26] [ 67%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain340-method_chain340] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain363-method_chain363] [gw23] [ 67%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain332-method_chain332] [gw35] [ 67%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain337-method_chain337] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain354-method_chain354] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain359-method_chain359] [gw41] [ 67%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain333-method_chain333] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain351-method_chain351] [gw38] [ 68%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain339-method_chain339] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain360-method_chain360] [gw22] [ 68%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain334-method_chain334] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain353-method_chain353] [gw25] [ 68%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain336-method_chain336] [gw20] [ 68%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain342-method_chain342] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain361-method_chain361] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain368-method_chain368] [gw24] [ 68%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain335-method_chain335] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain358-method_chain358] [gw28] [ 69%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain341-method_chain341] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain366-method_chain366] [gw33] [ 69%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain344-method_chain344] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain362-method_chain362] [gw29] [ 69%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain345-method_chain345] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain364-method_chain364] [gw3] [ 69%] PASSED tests/test_binary.py::test_intersect[opposite] tests/test_binary.py::test_coverage[False] [gw2] [ 69%] PASSED tests/test_binary.py::test_overlap[opposite] tests/test_binary.py::test_intersect[False] [gw30] [ 70%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain329-method_chain329] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain356-method_chain356] [gw21] [ 70%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain347-method_chain347] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain371-method_chain371] [gw27] [ 70%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain349-method_chain349] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain369-method_chain369] [gw34] [ 70%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain352-method_chain352] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain372-method_chain372] [gw18] [ 70%] PASSED tests/test_binary.py::test_k_nearest[None-True-same-last] tests/test_binary.py::test_k_nearest[None-True-False-last] [gw37] [ 70%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain346-method_chain346] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain370-method_chain370] [gw26] [ 71%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain363-method_chain363] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain377-method_chain377] [gw38] [ 71%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain360-method_chain360] [gw32] [ 71%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain357-method_chain357] [gw35] [ 71%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain359-method_chain359] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain373-method_chain373] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain381-method_chain381] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain379-method_chain379] [gw31] [ 71%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain343-method_chain343] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain367-method_chain367] [gw39] [ 72%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain350-method_chain350] [gw22] [ 72%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain353-method_chain353] [gw23] [ 72%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain354-method_chain354] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain374-method_chain374] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain382-method_chain382] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain378-method_chain378] [gw25] [ 72%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain361-method_chain361] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain383-method_chain383] [gw36] [ 72%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain355-method_chain355] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain376-method_chain376] [gw20] [ 73%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain368-method_chain368] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain384-method_chain384] [gw24] [ 73%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain358-method_chain358] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain385-method_chain385] [gw41] [ 73%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain351-method_chain351] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain380-method_chain380] [gw28] [ 73%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain366-method_chain366] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain386-method_chain386] [gw40] [ 73%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain348-method_chain348] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain375-method_chain375] [gw29] [ 74%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain364-method_chain364] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain388-method_chain388] [gw33] [ 74%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain362-method_chain362] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain387-method_chain387] [gw34] [ 74%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain372-method_chain372] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain394-method_chain394] [gw21] [ 74%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain371-method_chain371] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain392-method_chain392] [gw27] [ 74%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain369-method_chain369] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain393-method_chain393] [gw37] [ 74%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain370-method_chain370] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain395-method_chain395] [gw30] [ 75%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain356-method_chain356] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain391-method_chain391] [gw31] [ 75%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain367-method_chain367] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain400-method_chain400] [gw32] [ 75%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain373-method_chain373] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain397-method_chain397] [gw26] [ 75%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain377-method_chain377] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain396-method_chain396] [gw39] [ 75%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain374-method_chain374] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain401-method_chain401] [gw36] [ 76%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain376-method_chain376] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain405-method_chain405] [gw28] [ 76%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain386-method_chain386] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain409-method_chain409] [gw38] [ 76%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain381-method_chain381] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain398-method_chain398] [gw40] [ 76%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain375-method_chain375] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain410-method_chain410] [gw20] [ 76%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain384-method_chain384] [gw35] [ 77%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain379-method_chain379] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain406-method_chain406] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain399-method_chain399] [gw29] [ 77%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain388-method_chain388] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain411-method_chain411] [gw24] [ 77%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain385-method_chain385] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain407-method_chain407] [gw33] [ 77%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain387-method_chain387] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain412-method_chain412] [gw9] [ 77%] PASSED tests/test_binary.py::test_nearest[upstream-False-opposite] tests/test_binary.py::test_nearest[downstream-True-False] [gw23] [ 77%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain378-method_chain378] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain403-method_chain403] [gw30] [ 78%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain391-method_chain391] [gw41] [ 78%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain380-method_chain380] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain408-method_chain408] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain417-method_chain417] [gw22] [ 78%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain382-method_chain382] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain402-method_chain402] [gw11] [ 78%] PASSED tests/test_binary.py::test_nearest[downstream-False-opposite] tests/test_binary.py::test_jaccard[False] [gw25] [ 78%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain383-method_chain383] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain404-method_chain404] [gw31] [ 79%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain400-method_chain400] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain418-method_chain418] [gw28] [ 79%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain409-method_chain409] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain423-method_chain423] [gw39] [ 79%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain401-method_chain401] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain421-method_chain421] [gw34] [ 79%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain394-method_chain394] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain413-method_chain413] [gw40] [ 79%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain410-method_chain410] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain425-method_chain425] [gw27] [ 80%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain393-method_chain393] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain415-method_chain415] [gw33] [ 80%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain412-method_chain412] [gw36] [ 80%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain405-method_chain405] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain430-method_chain430] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain422-method_chain422] [gw29] [ 80%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain411-method_chain411] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain428-method_chain428] [gw37] [ 80%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain395-method_chain395] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain416-method_chain416] [gw24] [ 80%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain407-method_chain407] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain429-method_chain429] [gw26] [ 81%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain396-method_chain396] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain420-method_chain420] [gw41] [ 81%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain408-method_chain408] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain433-method_chain433] [gw21] [ 81%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain392-method_chain392] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain414-method_chain414] [gw20] [ 81%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain406-method_chain406] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain426-method_chain426] [gw30] [ 81%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain417-method_chain417] [gw32] [ 82%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain397-method_chain397] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain434-method_chain434] [gw13] [ 82%] PASSED tests/test_binary.py::test_join[False] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain419-method_chain419] tests/test_binary.py::test_join[same] [gw35] [ 82%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain399-method_chain399] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain427-method_chain427] [gw23] [ 82%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain403-method_chain403] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain432-method_chain432] [gw22] [ 82%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain402-method_chain402] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain435-method_chain435] [gw28] [ 83%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain423-method_chain423] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain439-method_chain439] [gw7] [ 83%] PASSED tests/test_binary.py::test_nearest[None-False-opposite] [gw38] [ 83%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain398-method_chain398] tests/test_binary.py::test_nearest[upstream-True-False] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain424-method_chain424] [gw39] [ 83%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain421-method_chain421] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain440-method_chain440] [gw25] [ 83%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain404-method_chain404] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain437-method_chain437] [gw36] [ 83%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain422-method_chain422] tests/test_io.py::test_read_gtf [gw36] [ 84%] PASSED tests/test_io.py::test_read_gtf tests/windows/test_windows.py::test_windows [gw36] [ 84%] PASSED tests/windows/test_windows.py::test_windows tests/windows/test_windows.py::test_windows2 [gw36] [ 84%] PASSED tests/windows/test_windows.py::test_windows2 [gw27] [ 84%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain415-method_chain415] tests/test_getset_attr.py::test_getsetattr_fails [gw27] [ 84%] PASSED tests/test_getset_attr.py::test_getsetattr_fails [gw31] [ 85%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain418-method_chain418] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain438-method_chain438] [gw40] [ 85%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain425-method_chain425] tests/test_getset_attr.py::test_getsetattr [gw40] [ 85%] PASSED tests/test_getset_attr.py::test_getsetattr [gw34] [ 85%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain413-method_chain413] tests/test_genomicfeatures.py::test_introns_single [gw37] [ 85%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain416-method_chain416] tests/test_io.py::test_read_bed [gw37] [ 86%] PASSED tests/test_io.py::test_read_bed [gw32] [ 86%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain419-method_chain419] tests/test_unary.py::test_cluster[False] [gw21] [ 86%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain414-method_chain414] [gw20] [ 86%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain426-method_chain426] tests/test_unary.py::test_merge[False] tests/test_unary.py::test_merge[True] [gw33] [ 86%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain430-method_chain430] tests/test_getset_attr.py::test_getsetattr_with_str [gw33] [ 87%] PASSED tests/test_getset_attr.py::test_getsetattr_with_str [gw30] [ 87%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain434-method_chain434] tests/test_unary.py::test_cluster[True] [gw10] [ 87%] PASSED tests/test_binary.py::test_nearest[downstream-True-opposite] tests/test_binary.py::test_nearest[downstream-False-False] [gw8] [ 87%] PASSED tests/test_binary.py::test_nearest[upstream-True-opposite] tests/test_binary.py::test_nearest[upstream-False-False] [gw26] [ 87%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain420-method_chain420] tests/test_stranded.py::test_stranded [gw26] [ 87%] PASSED tests/test_stranded.py::test_stranded [gw28] [ 88%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain439-method_chain439] tests/test_unary.py::test_windows [gw38] [ 88%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain424-method_chain424] tests/test_unary.py::test_init[False] [gw39] [ 88%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain440-method_chain440] tests/test_unary.py::test_getitem [gw41] [ 88%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain433-method_chain433] tests/test_stranded.py::test_unstrand [gw41] [ 88%] PASSED tests/test_stranded.py::test_unstrand [gw25] [ 89%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain437-method_chain437] [gw22] [ 89%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain435-method_chain435] tests/test_unary.py::test_summary [gw24] [ 89%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain429-method_chain429] tests/test_unary.py::test_merge_by[False] tests/test_pickle.py::test_pickle [gw24] [ 89%] PASSED tests/test_pickle.py::test_pickle [gw29] [ 89%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain428-method_chain428] tests/test_io.py::test_read_gff3 [gw29] [ 90%] PASSED tests/test_io.py::test_read_gff3 [gw31] [ 90%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain438-method_chain438] [gw35] [ 90%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain427-method_chain427] tests/test_unary.py::test_cluster_by[False] [gw34] [ 90%] PASSED tests/test_genomicfeatures.py::test_introns_single [gw6] [ 90%] PASSED tests/test_binary.py::test_nearest[None-True-opposite] tests/test_binary.py::test_nearest[None-False-False] [gw23] [ 90%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain432-method_chain432] tests/test_unary.py::test_merge_by[True] [gw0] [ 91%] PASSED tests/test_binary.py::test_set_intersect[same] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain263-method_chain263] [gw38] [ 91%] PASSED tests/test_unary.py::test_init[False] [gw0] [ 91%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain263-method_chain263] [gw12] [ 91%] PASSED tests/test_binary.py::test_k_nearest[downstream-False-False-last] tests/test_binary.py::test_k_nearest[downstream-True-opposite-last] [gw16] [ 91%] PASSED tests/test_binary.py::test_k_nearest[upstream-False-False-last] tests/test_binary.py::test_k_nearest[upstream-True-opposite-last] [gw39] [ 92%] PASSED tests/test_unary.py::test_getitem [gw1] [ 92%] PASSED tests/test_binary.py::test_set_union[same] tests/test_binary.py::test_overlap[False] [gw2] [ 92%] PASSED tests/test_binary.py::test_intersect[False] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain390-method_chain390] [gw19] [ 92%] PASSED tests/test_binary.py::test_k_nearest[None-False-False-last] tests/test_binary.py::test_k_nearest[None-True-opposite-last] [gw2] [ 92%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain390-method_chain390] [gw14] [ 93%] PASSED tests/test_binary.py::test_k_nearest[downstream-False-opposite-last] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain365-method_chain365] [gw14] [ 93%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain365-method_chain365] [gw4] [ 93%] PASSED tests/test_binary.py::test_coverage[opposite] tests/test_binary.py::test_subtraction[same] [gw11] [ 93%] PASSED tests/test_binary.py::test_jaccard[False] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain436-method_chain436] [gw25] [ 93%] PASSED tests/test_unary.py::test_summary [gw5] [ 93%] PASSED tests/test_binary.py::test_subtraction[False] tests/test_binary.py::test_nearest[None-True-False] [gw11] [ 94%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain436-method_chain436] [gw13] [ 94%] PASSED tests/test_binary.py::test_join[same] tests/test_unary.py::test_cluster_by[True] [gw20] [ 94%] PASSED tests/test_unary.py::test_merge[False] [gw21] [ 94%] PASSED tests/test_unary.py::test_merge[True] [gw9] [ 94%] PASSED tests/test_binary.py::test_nearest[downstream-True-False] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain431-method_chain431] [gw3] [ 95%] PASSED tests/test_binary.py::test_coverage[False] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain389-method_chain389] [gw10] [ 95%] PASSED tests/test_binary.py::test_nearest[downstream-False-False] [gw17] [ 95%] PASSED tests/test_binary.py::test_k_nearest[upstream-True-False-last] tests/test_binary.py::test_k_nearest[None-False-opposite-last] [gw8] [ 95%] PASSED tests/test_binary.py::test_nearest[upstream-False-False] [gw15] [ 95%] PASSED tests/test_binary.py::test_k_nearest[downstream-True-False-last] tests/test_binary.py::test_k_nearest[upstream-False-opposite-last] [gw9] [ 96%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain431-method_chain431] [gw7] [ 96%] PASSED tests/test_binary.py::test_nearest[upstream-True-False] tests/test_unary.py::test_init[True] [gw3] [ 96%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain389-method_chain389] [gw28] [ 96%] PASSED tests/test_unary.py::test_windows [gw22] [ 96%] PASSED tests/test_unary.py::test_merge_by[False] [gw23] [ 96%] PASSED tests/test_unary.py::test_merge_by[True] [gw6] [ 97%] PASSED tests/test_binary.py::test_nearest[None-False-False] [gw1] [ 97%] PASSED tests/test_binary.py::test_overlap[False] [gw30] [ 97%] PASSED tests/test_unary.py::test_cluster[True] [gw18] [ 97%] PASSED tests/test_binary.py::test_k_nearest[None-True-False-last] tests/test_binary.py::test_k_nearest_1_vs_nearest [gw7] [ 97%] PASSED tests/test_unary.py::test_init[True] [gw32] [ 98%] PASSED tests/test_unary.py::test_cluster[False] [gw12] [ 98%] PASSED tests/test_binary.py::test_k_nearest[downstream-True-opposite-last] [gw16] [ 98%] PASSED tests/test_binary.py::test_k_nearest[upstream-True-opposite-last] [gw19] [ 98%] PASSED tests/test_binary.py::test_k_nearest[None-True-opposite-last] [gw5] [ 98%] PASSED tests/test_binary.py::test_nearest[None-True-False] [gw4] [ 99%] PASSED tests/test_binary.py::test_subtraction[same] [gw15] [ 99%] PASSED tests/test_binary.py::test_k_nearest[upstream-False-opposite-last] [gw17] [ 99%] PASSED tests/test_binary.py::test_k_nearest[None-False-opposite-last] [gw35] [ 99%] PASSED tests/test_unary.py::test_cluster_by[False] [gw13] [ 99%] PASSED tests/test_unary.py::test_cluster_by[True] [gw18] [100%] PASSED tests/test_binary.py::test_k_nearest_1_vs_nearest =============================== warnings summary =============================== tests/conftest.py:83 /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/conftest.py:83: SyntaxWarning: invalid escape sequence '\s' sep="\s+", pyranges/__init__.py:18: 43 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/__init__.py:18: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html import pkg_resources tests/test_binary.py:118: 42 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_binary.py:118: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) tests/test_binary.py:139: 42 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_binary.py:139: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) tests/test_binary.py:160: 42 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_binary.py:160: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) tests/test_binary.py:187: 42 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_binary.py:187: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) tests/test_binary.py:212: 42 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_binary.py:212: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) tests/test_binary.py:291: 42 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_binary.py:291: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) tests/test_binary.py:329: 42 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_binary.py:329: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) tests/test_binary.py:368: 42 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_binary.py:368: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) tests/test_binary.py:392: 42 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_binary.py:392: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) tests/test_binary.py:426: 42 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_binary.py:426: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) tests/test_binary.py:516: 42 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_binary.py:516: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) tests/test_binary.py:579: 42 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_binary.py:579: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) pyranges/methods/init.py:60: 210 warnings .pybuild/cpython3_3.13_pyranges/build/tests/test_change_chromosome_custom.py: 2 warnings .pybuild/cpython3_3.13_pyranges/build/tests/test_concat.py: 8 warnings .pybuild/cpython3_3.13_pyranges/build/tests/test_count_overlaps.py: 1 warning .pybuild/cpython3_3.13_pyranges/build/tests/data/test_data.py: 9 warnings .pybuild/cpython3_3.13_pyranges/build/tests/test_do_not_error.py: 160544 warnings .pybuild/cpython3_3.13_pyranges/build/tests/test_binary.py: 159291 warnings .pybuild/cpython3_3.13_pyranges/build/tests/test_io.py: 4 warnings .pybuild/cpython3_3.13_pyranges/build/tests/windows/test_windows.py: 2 warnings .pybuild/cpython3_3.13_pyranges/build/tests/test_getset_attr.py: 3 warnings .pybuild/cpython3_3.13_pyranges/build/tests/test_stranded.py: 6 warnings .pybuild/cpython3_3.13_pyranges/build/tests/test_pickle.py: 1 warning .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py: 358 warnings .pybuild/cpython3_3.13_pyranges/build/tests/test_unary.py: 24091 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/methods/init.py:60: FutureWarning: The default of observed=False is deprecated and will be changed to True in a future version of pandas. Pass observed=False to retain current behavior or observed=True to adopt the future default and silence this warning. return {k: v for k, v in df.groupby(grpby_key)} pyranges/methods/init.py:189: 168 warnings .pybuild/cpython3_3.13_pyranges/build/tests/test_change_chromosome_custom.py: 1 warning .pybuild/cpython3_3.13_pyranges/build/tests/test_concat.py: 7 warnings .pybuild/cpython3_3.13_pyranges/build/tests/test_do_not_error.py: 4447 warnings .pybuild/cpython3_3.13_pyranges/build/tests/test_binary.py: 2000 warnings .pybuild/cpython3_3.13_pyranges/build/tests/test_stranded.py: 2 warnings .pybuild/cpython3_3.13_pyranges/build/tests/test_unary.py: 6615 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/methods/init.py:189: FutureWarning: The default of observed=False is deprecated and will be changed to True in a future version of pandas. Pass observed=False to retain current behavior or observed=True to adopt the future default and silence this warning. empty_removed = df.groupby("Chromosome") tests/test_do_not_error.py:46: 42 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_do_not_error.py:46: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) tests/test_unary.py:35: 42 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_unary.py:35: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) tests/test_unary.py:100: 42 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_unary.py:100: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) tests/test_unary.py:163: 42 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_unary.py:163: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) tests/test_unary.py:205: 42 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_unary.py:205: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) tests/test_unary.py:234: 42 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_unary.py:234: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) tests/test_unary.py:272: 42 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_unary.py:272: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) tests/test_unary.py:287: 42 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_unary.py:287: HypothesisDeprecationWarning: The return_value health check is deprecated, because this is always an error. @settings( tests/test_unary.py:315: 42 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_unary.py:315: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) .pybuild/cpython3_3.13_pyranges/build/tests/test_concat.py::test_concat_unstranded_stranded /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/methods/concat.py:47: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[NaN, NaN, NaN, '+', '-'] Categories (3, object): ['+', '-', '.']' has dtype incompatible with category, please explicitly cast to a compatible dtype first. v.loc[:, "Strand"] = type_v.cat.add_categories(["."]) .pybuild/cpython3_3.13_pyranges/build/tests/test_concat.py::test_concat_stranded_unstranded /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/methods/concat.py:47: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['+', '+', '-', NaN, NaN] Categories (3, object): ['+', '-', '.']' has dtype incompatible with category, please explicitly cast to a compatible dtype first. v.loc[:, "Strand"] = type_v.cat.add_categories(["."]) .pybuild/cpython3_3.13_pyranges/build/tests/test_concat.py: 1 warning .pybuild/cpython3_3.13_pyranges/build/tests/test_do_not_error.py: 3078 warnings .pybuild/cpython3_3.13_pyranges/build/tests/test_stranded.py: 2 warnings .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py: 119 warnings .pybuild/cpython3_3.13_pyranges/build/tests/test_unary.py: 5615 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/methods/init.py:187: FutureWarning: The default of observed=False is deprecated and will be changed to True in a future version of pandas. Pass observed=False to retain current behavior or observed=True to adopt the future default and silence this warning. empty_removed = df.groupby(["Chromosome", "Strand"]) .pybuild/cpython3_3.13_pyranges/build/tests/test_do_not_error.py: 7358 warnings .pybuild/cpython3_3.13_pyranges/build/tests/test_binary.py: 15629 warnings .pybuild/cpython3_3.13_pyranges/build/tests/test_unary.py: 17454 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/tostring2.py:31: FutureWarning: The behavior of DataFrame concatenation with empty or all-NA entries is deprecated. In a future version, this will no longer exclude empty or all-NA columns when determining the result dtypes. To retain the old behavior, exclude the relevant entries before the concat operation. df = pd.concat([plus, minus]) .pybuild/cpython3_3.13_pyranges/build/tests/test_do_not_error.py: 1565 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/pyranges.py:3779: FutureWarning: The behavior of Series.replace (and DataFrame.replace) with CategoricalDtype is deprecated. In a future version, replace will only be used for cases that preserve the categories. To change the categories, use ser.cat.rename_categories instead. other.Strand = other.Strand.replace({"+": "-", "-": "+"}) .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1217804. 1221351. 1223357. 1223968. 1227319. 1228946. 1232031.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000078808.16' 'ENSG00000078808.16' 'ENSG00000078808.16' 'ENSG00000078808.16' 'ENSG00000078808.16' 'ENSG00000078808.16']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1336515. 1337055. 1338183. 1338436. 1338653. 1339812. 1340190. 1340365. 1340503. 1342156. 1342484. 1342758. 1349350.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000107404.19' 'ENSG00000107404.19' 'ENSG00000107404.19' 'ENSG00000107404.19' 'ENSG00000107404.19' 'ENSG00000107404.19' 'ENSG00000107404.19' 'ENSG00000107404.19' 'ENSG00000107404.19' 'ENSG00000107404.19' 'ENSG00000107404.19' 'ENSG00000107404.19']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1311924. 1312147. 1313592. 1315697. 1317450. 1321096. 1321984. 1323287. 1324691.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000127054.20' 'ENSG00000127054.20' 'ENSG00000127054.20' 'ENSG00000127054.20' 'ENSG00000127054.20' 'ENSG00000127054.20' 'ENSG00000127054.20' 'ENSG00000127054.20']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1293708. 1293933. 1294199. 1294628. 1295008. 1295554. 1295938. 1296109. 1296280. 1296633. 1297933. 1298265. 1298421. 1299905. 1300068. 1300202. 1300692. 1302046. 1302975. 1305929. 1307156. 1307383. 1308018. 1309609.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1084506. 1085310. 1086012. 1087636. 1092294. 1092813. 1106127. 1106871. 1115075. 1116361.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000131591.17' 'ENSG00000131591.17' 'ENSG00000131591.17' 'ENSG00000131591.17' 'ENSG00000131591.17' 'ENSG00000131591.17' 'ENSG00000131591.17' 'ENSG00000131591.17' 'ENSG00000131591.17']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1472089. 1477350. 1478745. 1479108. 1480936. 1482303. 1482662. 1485171. 1486235. 1486668. 1487914. 1490671. 1497848.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000160072.19' 'ENSG00000160072.19' 'ENSG00000160072.19' 'ENSG00000160072.19' 'ENSG00000160072.19' 'ENSG00000160072.19' 'ENSG00000160072.19' 'ENSG00000160072.19' 'ENSG00000160072.19' 'ENSG00000160072.19' 'ENSG00000160072.19' 'ENSG00000160072.19']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1255487. 1256335. 1257130. 1257310. 1262390. 1263569. 1264830. 1266290. 1267992. 1271637. 1273885.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000160087.20' 'ENSG00000160087.20' 'ENSG00000160087.20' 'ENSG00000160087.20' 'ENSG00000160087.20' 'ENSG00000160087.20' 'ENSG00000160087.20' 'ENSG00000160087.20' 'ENSG00000160087.20' 'ENSG00000160087.20']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1173926. 1174321. 1174489. 1175034. 1179333. 1179853. 1180340. 1180884. 1181815. 1182446. 1183047. 1184091. 1185864. 1196488. 1196716. 1197186. 1197935.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000162571.13' 'ENSG00000162571.13' 'ENSG00000162571.13' 'ENSG00000162571.13' 'ENSG00000162571.13' 'ENSG00000162571.13' 'ENSG00000162571.13' 'ENSG00000162571.13' 'ENSG00000162571.13' 'ENSG00000162571.13' 'ENSG00000162571.13' 'ENSG00000162571.13' 'ENSG00000162571.13' 'ENSG00000162571.13' 'ENSG00000162571.13' 'ENSG00000162571.13']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1281610. 1282010. 1282319. 1284090. 1285664. 1286278. 1286975. 1287299. 1287836. 1288037. 1290388. 1290555. 1290694. 1290953. 1291140. 1292029.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000162572.20' 'ENSG00000162572.20' 'ENSG00000162572.20' 'ENSG00000162572.20' 'ENSG00000162572.20' 'ENSG00000162572.20' 'ENSG00000162572.20' 'ENSG00000162572.20' 'ENSG00000162572.20' 'ENSG00000162572.20' 'ENSG00000162572.20' 'ENSG00000162572.20' 'ENSG00000162572.20' 'ENSG00000162572.20' 'ENSG00000162572.20']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1353946. 1354106. 1354509. 1355752. 1356704. 1358794. 1361777.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000162576.16' 'ENSG00000162576.16' 'ENSG00000162576.16' 'ENSG00000162576.16' 'ENSG00000162576.16' 'ENSG00000162576.16']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1331536. 1331938. 1332806. 1333124. 1333379. 1335306.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000169962.4' 'ENSG00000169962.4' 'ENSG00000169962.4' 'ENSG00000169962.4' 'ENSG00000169962.4']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1308720. 1308972. 1309851. 1311071. 1311677.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000169972.11' 'ENSG00000169972.11' 'ENSG00000169972.11' 'ENSG00000169972.11']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1373902. 1375495.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000175756.13']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1235041.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 818202. 819837.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000177757.2']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1435146. 1435821. 1437484. 1442882.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000179403.11' 'ENSG00000179403.11' 'ENSG00000179403.11']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1242646. 1243552. 1244275. 1244724. 1246722.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000184163.3' 'ENSG00000184163.3' 'ENSG00000184163.3' 'ENSG00000184163.3']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 65433. 65573. 71585.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000186092.6' 'ENSG00000186092.6']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1211832. 1212138. 1212704. 1213785. 1214138.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000186827.10' 'ENSG00000186827.10' 'ENSG00000186827.10' 'ENSG00000186827.10']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1203968. 1204236. 1204486. 1205680. 1206691.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000186891.13' 'ENSG00000186891.13' 'ENSG00000186891.13' 'ENSG00000186891.13']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 966614. 966803. 970423. 970601. 971006. 971208. 971523. 972150. 972424. 973010. 973326. 973640. 974051. 974364. 975108. 975865.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000187583.10' 'ENSG00000187583.10' 'ENSG00000187583.10' 'ENSG00000187583.10' 'ENSG00000187583.10' 'ENSG00000187583.10' 'ENSG00000187583.10' 'ENSG00000187583.10' 'ENSG00000187583.10' 'ENSG00000187583.10' 'ENSG00000187583.10' 'ENSG00000187583.10' 'ENSG00000187583.10' 'ENSG00000187583.10' 'ENSG00000187583.10']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1001281. 1008279. 1013576. 1014540.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000187608.9' 'ENSG00000187608.9' 'ENSG00000187608.9']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 924948. 925189. 925800. 926013. 930336. 931089. 935896. 939129. 939460. 940462. 941306. 943058. 943377. 944581.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000187634.11' 'ENSG00000187634.11' 'ENSG00000187634.11' 'ENSG00000187634.11' 'ENSG00000187634.11' 'ENSG00000187634.11' 'ENSG00000187634.11' 'ENSG00000187634.11' 'ENSG00000187634.11' 'ENSG00000187634.11' 'ENSG00000187634.11' 'ENSG00000187634.11' 'ENSG00000187634.11']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 976269. 976641. 981029. 981173. 982093.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000187642.9' 'ENSG00000187642.9' 'ENSG00000187642.9' 'ENSG00000187642.9']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 960800. 961750. 962478. 962917. 963253. 963504. 964008. 964180. 964530. 965715.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000187961.13' 'ENSG00000187961.13' 'ENSG00000187961.13' 'ENSG00000187961.13' 'ENSG00000187961.13' 'ENSG00000187961.13' 'ENSG00000187961.13' 'ENSG00000187961.13' 'ENSG00000187961.13']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1020373. 1022462. 1034703. 1035324. 1040880. 1041397. 1041702. 1042162. 1043457. 1043732. 1044023. 1044257. 1044439. 1045277. 1045523. 1045876. 1046088. 1046349. 1046735. 1046957. 1047454. 1047687. 1047895. 1048365. 1049059. 1049451. 1049795. 1050037. 1050329. 1050591. 1050837. 1051043. 1051369. 1051645. 1051815. 1053977. 1054551. 1056118.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 999432. 1000172.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000188290.10']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 944800. 945146. 945422. 945653. 946286. 947060. 948232. 948603. 951238. 952139. 952600. 953288. 953892. 954523. 956013. 956215. 957025. 959081. 959309.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000188976.10' 'ENSG00000188976.10' 'ENSG00000188976.10' 'ENSG00000188976.10' 'ENSG00000188976.10' 'ENSG00000188976.10' 'ENSG00000188976.10' 'ENSG00000188976.10' 'ENSG00000188976.10' 'ENSG00000188976.10' 'ENSG00000188976.10' 'ENSG00000188976.10' 'ENSG00000188976.10' 'ENSG00000188976.10' 'ENSG00000188976.10' 'ENSG00000188976.10' 'ENSG00000188976.10' 'ENSG00000188976.10']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1512473. 1516088. 1517412. 1517775. 1518990. 1520306. 1520617.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000197785.13' 'ENSG00000197785.13' 'ENSG00000197785.13' 'ENSG00000197785.13' 'ENSG00000197785.13' 'ENSG00000197785.13' 'ENSG00000197785.13']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 634922.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1169087.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1426385. 1427787.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000205116.3']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1176396. 1179555.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000205231.1']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1167952.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1167198.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1450758. 1452122. 1452434. 1454500. 1455519. 1455916. 1456349. 1457180. 1459231. 1460917. 1462708. 1470158.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000215915.9' 'ENSG00000215915.9' 'ENSG00000215915.9' 'ENSG00000215915.9' 'ENSG00000215915.9' 'ENSG00000215915.9' 'ENSG00000215915.9' 'ENSG00000215915.9' 'ENSG00000215915.9' 'ENSG00000215915.9' 'ENSG00000215915.9']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1059846. 1060393. 1061117. 1063201. 1063566. 1064401. 1064589. 1065475. 1066456. 1066667. 1067646. 1068003. 1068724. 1069355.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000217801.9' 'ENSG00000217801.9' 'ENSG00000217801.9' 'ENSG00000217801.9' 'ENSG00000217801.9' 'ENSG00000217801.9' 'ENSG00000217801.9' 'ENSG00000217801.9' 'ENSG00000217801.9' 'ENSG00000217801.9' 'ENSG00000217801.9' 'ENSG00000217801.9' 'ENSG00000217801.9']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1387582. 1387869. 1388743. 1388830. 1389047. 1389473. 1390371. 1390563. 1392803. 1393460. 1395537. 1398366. 1398956. 1399328.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000221978.11' 'ENSG00000221978.11' 'ENSG00000221978.11' 'ENSG00000221978.11' 'ENSG00000221978.11' 'ENSG00000221978.11' 'ENSG00000221978.11' 'ENSG00000221978.11' 'ENSG00000221978.11' 'ENSG00000221978.11' 'ENSG00000221978.11' 'ENSG00000221978.11' 'ENSG00000221978.11']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 157887.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 758336.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1379032.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 921016.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1137110. 1141032. 1144056.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000223823.1' 'ENSG00000223823.1']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 12227. 12721. 13052. 14409.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000223972.5' 'ENSG00000223972.5' 'ENSG00000223972.5']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1325102. 1325595. 1327032. 1328897.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000224051.6' 'ENSG00000224051.6' 'ENSG00000224051.6']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1402046.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1012190. 1013193.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000224969.1']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1430954. 1431843. 1434573.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000225285.1' 'ENSG00000225285.1']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 630683.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 827522.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1420564. 1422691.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000225905.1']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 629433.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 14501. 15038. 15947. 16765. 17055. 17368. 17742. 18061. 18366. 24891. 29570.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000227232.5' 'ENSG00000227232.5' 'ENSG00000227232.5' 'ENSG00000227232.5' 'ENSG00000227232.5' 'ENSG00000227232.5' 'ENSG00000227232.5' 'ENSG00000227232.5' 'ENSG00000227232.5' 'ENSG00000227232.5']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 729804. 733364. 735613. 743350. 744391. 744825. 746818. 756141. 759123. 765247. 766387. 768613. 769712. 773107. 774280. 778626.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000228327.3' 'ENSG00000228327.3' 'ENSG00000228327.3' 'ENSG00000228327.3' 'ENSG00000228327.3' 'ENSG00000228327.3' 'ENSG00000228327.3' 'ENSG00000228327.3' 'ENSG00000228327.3' 'ENSG00000228327.3' 'ENSG00000228327.3' 'ENSG00000228327.3' 'ENSG00000228327.3' 'ENSG00000228327.3' 'ENSG00000228327.3']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 259025. 261634. 268204. 268816. 289370. 297502. 357586. 358183. 359681.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000228463.10' 'ENSG00000228463.10' 'ENSG00000228463.10' 'ENSG00000228463.10' 'ENSG00000228463.10' 'ENSG00000228463.10' 'ENSG00000228463.10' 'ENSG00000228463.10']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 825552. 826923. 827775. 827853. 829104. 831677. 842020. 847806. 849602. 850351. 852515. 852766. 859446.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000228794.8' 'ENSG00000228794.8' 'ENSG00000228794.8' 'ENSG00000228794.8' 'ENSG00000228794.8' 'ENSG00000228794.8' 'ENSG00000228794.8' 'ENSG00000228794.8' 'ENSG00000228794.8' 'ENSG00000228794.8' 'ENSG00000228794.8' 'ENSG00000228794.8']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 633438.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 724360. 724903.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000229376.3']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 761154. 761989.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000229905.1']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 586358. 586955. 588453. 594756. 598551. 601577. 608056. 612864. 627823. 628223. 629006. 631204. 633129. 698959. 702340. 703789. 711922. 720206. 724564. 732212. 733064. 827796.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000230021.10' 'ENSG00000230021.10' 'ENSG00000230021.10' 'ENSG00000230021.10' 'ENSG00000230021.10' 'ENSG00000230021.10' 'ENSG00000230021.10' 'ENSG00000230021.10' 'ENSG00000230021.10' 'ENSG00000230021.10' 'ENSG00000230021.10' 'ENSG00000230021.10' 'ENSG00000230021.10' 'ENSG00000230021.10' 'ENSG00000230021.10' 'ENSG00000230021.10' 'ENSG00000230021.10' 'ENSG00000230021.10' 'ENSG00000230021.10' 'ENSG00000230021.10' 'ENSG00000230021.10']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 801163. 805891. 808623. 810170. 817712.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000230092.7' 'ENSG00000230092.7' 'ENSG00000230092.7' 'ENSG00000230092.7']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 868675. 869575. 870201. 875155. 876903.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000230368.2' 'ENSG00000230368.2' 'ENSG00000230368.2' 'ENSG00000230368.2']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1275299. 1279393. 1280420.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000230415.1' 'ENSG00000230415.1']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 911473. 914948.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000230699.2']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1008229.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 489387. 489906.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000233653.3']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 134836.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 874349.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1419549. 1420592. 1421769.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000235098.8' 'ENSG00000235098.8']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 587729. 594768.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000235146.2']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 358957. 360168. 366052.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000236601.2' 'ENSG00000236601.2']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 348366.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 365692. 366151. 368450. 373323. 379972. 476945. 485208. 489553. 494898. 495049. 495476. 496605. 497299. 498305. 499369. 501620. 502243. 502955. 505103. 514423. 517266. 522928.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000237094.12' 'ENSG00000237094.12' 'ENSG00000237094.12' 'ENSG00000237094.12' 'ENSG00000237094.12' 'ENSG00000237094.12' 'ENSG00000237094.12' 'ENSG00000237094.12' 'ENSG00000237094.12' 'ENSG00000237094.12' 'ENSG00000237094.12' 'ENSG00000237094.12' 'ENSG00000237094.12' 'ENSG00000237094.12' 'ENSG00000237094.12' 'ENSG00000237094.12' 'ENSG00000237094.12' 'ENSG00000237094.12' 'ENSG00000237094.12' 'ENSG00000237094.12' 'ENSG00000237094.12']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1072575. 1074307.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000237330.2']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 779092. 782191. 783363. 784977. 787672. 793041. 795582. 801876. 803667. 804222. 805270. 806459. 807465. 810060.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000237491.8' 'ENSG00000237491.8' 'ENSG00000237491.8' 'ENSG00000237491.8' 'ENSG00000237491.8' 'ENSG00000237491.8' 'ENSG00000237491.8' 'ENSG00000237491.8' 'ENSG00000237491.8' 'ENSG00000237491.8' 'ENSG00000237491.8' 'ENSG00000237491.8' 'ENSG00000237491.8']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 35174. 35481. 36081.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000237613.2' 'ENSG00000237613.2']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 632616.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 91629. 92240. 111357. 112804. 120932. 129223. 133723.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000238009.6' 'ENSG00000238009.6' 'ENSG00000238009.6' 'ENSG00000238009.6' 'ENSG00000238009.6' 'ENSG00000238009.6']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 139847. 140339.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000239906.1']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 90050. 91105.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000239945.1']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 57653. 58856. 64116.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000240361.2' 'ENSG00000240361.2']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 633741.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1317899. 1318689.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000240731.1']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 914444. 914971.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000241180.1']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 160690. 161525.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000241599.1']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 143011. 149707. 155831. 164791. 165942. 168165. 168767. 169264. 172688. 173862.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000241860.6' 'ENSG00000241860.6' 'ENSG00000241860.6' 'ENSG00000241860.6' 'ENSG00000241860.6' 'ENSG00000241860.6' 'ENSG00000241860.6' 'ENSG00000241860.6' 'ENSG00000241860.6']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1402601. 1407019. 1407313.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000242485.5' 'ENSG00000242485.5']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1055215. 1056116.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000242590.1']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 30039. 30667. 31109.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000243485.5' 'ENSG00000243485.5']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 634376.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 491989. 493241.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000250575.1']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1251334.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1405752.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 53312.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 675265.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 135895.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 440232.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 137965.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1170343.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 904957. 915976.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000272438.1']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1410618.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 998051.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1062808. 1063288.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000273443.1']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 187958.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1296170.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 17436.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 516479.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 632413.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 185350. 185559. 186469. 187287. 187577. 187890. 188266. 188584. 188902. 195411.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000279457.4' 'ENSG00000279457.4' 'ENSG00000279457.4' 'ENSG00000279457.4' 'ENSG00000279457.4' 'ENSG00000279457.4' 'ENSG00000279457.4' 'ENSG00000279457.4' 'ENSG00000279457.4']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 182746. 183216. 183571. 183901. 184174.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000279928.2' 'ENSG00000279928.2' 'ENSG00000279928.2' 'ENSG00000279928.2']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 874591. 875155. 875625. 876611. 877234.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000283040.1' 'ENSG00000283040.1' 'ENSG00000283040.1' 'ENSG00000283040.1']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1312566.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 30503.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1339708.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 686673.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 451697.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1503661. 1509452.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000284740.1']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 782050.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1098113. 1104598.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000285812.1']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_unary.py: 2000 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_unary.py:153: FutureWarning: A value is trying to be set on a copy of a DataFrame or Series through chained assignment using an inplace method. The behavior will change in pandas 3.0. This inplace method will never work because the intermediate object on which we are setting values always behaves as a copy. For example, when doing 'df[col].method(value, inplace=True)', try using 'df.method({col: value}, inplace=True)' or df[col] = df[col].method(value) instead, to perform the operation inplace on the original object. result_df.Cluster.replace(cluster_ids, inplace=True) .pybuild/cpython3_3.13_pyranges/build/tests/test_unary.py: 2000 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_unary.py:178: FutureWarning: The default of observed=False is deprecated and will be changed to True in a future version of pandas. Pass observed=False to retain current behavior or observed=True to adopt the future default and silence this warning. for _, gdf in natsorted(df.groupby(groupby)): -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html =============== 531 passed, 413715 warnings in 722.40s (0:12:02) =============== I: pybuild pybuild:308: mkdir -pv /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges && cp -av /build/reproducible-path/pyranges-0.0.111+ds/tests/*.bed /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests && cp -av /build/reproducible-path/pyranges-0.0.111+ds/tests/test_data /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests && cp -av /build/reproducible-path/pyranges-0.0.111+ds/tests/data /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests && cp -av /build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges '/build/reproducible-path/pyranges-0.0.111+ds/tests/chip_10.bed' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/chip_10.bed' '/build/reproducible-path/pyranges-0.0.111+ds/tests/f1.bed' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/f1.bed' '/build/reproducible-path/pyranges-0.0.111+ds/tests/f2.bed' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/f2.bed' '/build/reproducible-path/pyranges-0.0.111+ds/tests/test_data' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_data' '/build/reproducible-path/pyranges-0.0.111+ds/tests/test_data/test_sorted.bam' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_data/test_sorted.bam' '/build/reproducible-path/pyranges-0.0.111+ds/tests/test_data/test_sorted.bam.bai' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_data/test_sorted.bam.bai' '/build/reproducible-path/pyranges-0.0.111+ds/tests/test_data/ensembl.gtf' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_data/ensembl.gtf' '/build/reproducible-path/pyranges-0.0.111+ds/tests/test_data/gencode.gff3' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_data/gencode.gff3' '/build/reproducible-path/pyranges-0.0.111+ds/tests/test_data/ucsc_df_to_parse.txt' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_data/ucsc_df_to_parse.txt' '/build/reproducible-path/pyranges-0.0.111+ds/tests/data' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/data' '/build/reproducible-path/pyranges-0.0.111+ds/tests/data/test_data.py' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/data/test_data.py' '/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/control.bam' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/example_data/control.bam' '/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/control.bam.bai' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/example_data/control.bam.bai' '/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/exons.bed' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/example_data/exons.bed' '/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/ensembl.gtf' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/example_data/ensembl.gtf' '/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/ucsc_human.bed.gz' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/example_data/ucsc_human.bed.gz' '/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/chipseq_background.bed' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/example_data/chipseq_background.bed' '/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/f2.bed' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/example_data/f2.bed' '/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/bw.bw' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/example_data/bw.bw' '/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/f1.bed' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/example_data/f1.bed' '/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/cpg.bed' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/example_data/cpg.bed' '/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/lamina.bed' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/example_data/lamina.bed' '/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/gencode_human.gtf.gz' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/example_data/gencode_human.gtf.gz' '/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/chipseq.bed' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/example_data/chipseq.bed' '/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/aorta.bed' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/example_data/aorta.bed' '/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/ensembl_human.gtf.gz' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/example_data/ensembl_human.gtf.gz' '/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/chromsizes.bed' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/example_data/chromsizes.bed' '/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/aorta2.bed' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/example_data/aorta2.bed' I: pybuild base:311: cd /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build; python3.12 -m pytest -v -n 42 ============================= test session starts ============================== platform linux -- Python 3.12.8, pytest-8.3.4, pluggy-1.5.0 -- /usr/bin/python3.12 cachedir: .pytest_cache hypothesis profile 'default' -> database=DirectoryBasedExampleDatabase(PosixPath('/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/.hypothesis/examples')) rootdir: /build/reproducible-path/pyranges-0.0.111+ds plugins: hypothesis-6.122.1, typeguard-4.4.1, xdist-3.6.1 created: 42/42 workers 42 workers [531 items] scheduling tests via LoadScheduling tests/data/test_data.py::test_all_data tests/test_binary.py::test_overlap[same] tests/test_binary.py::test_set_union[False] tests/test_binary.py::test_nearest[None-False-same] tests/test_binary.py::test_intersect[same] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain58-method_chain58] tests/test_binary.py::test_nearest[downstream-False-same] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain43-method_chain43] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain34-method_chain34] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain28-method_chain28] tests/test_binary.py::test_nearest[downstream-True-same] tests/test_binary.py::test_nearest[upstream-False-same] tests/test_binary.py::test_k_nearest[upstream-True-same-last] tests/test_binary.py::test_join[opposite] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain13-method_chain13] tests/test_binary.py::test_nearest[upstream-True-same] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain25-method_chain25] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain52-method_chain52] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain37-method_chain37] tests/test_change_chromosome_custom.py::test_change_chromosomes tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain22-method_chain22] tests/test_binary.py::test_k_nearest[None-False-same-last] tests/test_binary.py::test_coverage[same] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain4-method_chain4] tests/test_binary.py::test_subtraction[opposite] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain40-method_chain40] tests/test_binary.py::test_k_nearest[downstream-False-same-last] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain19-method_chain19] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain10-method_chain10] tests/test_binary.py::test_k_nearest[upstream-False-same-last] tests/test_concat.py::test_concat_unstranded_stranded tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain16-method_chain16] tests/test_binary.py::test_k_nearest[None-True-same-last] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain1-method_chain1] tests/test_binary.py::test_nearest[None-True-same] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain46-method_chain46] tests/test_binary.py::test_k_nearest[downstream-True-same-last] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain49-method_chain49] tests/test_binary.py::test_jaccard[same] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain7-method_chain7] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain31-method_chain31] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain55-method_chain55] [gw20] [ 0%] PASSED tests/test_change_chromosome_custom.py::test_change_chromosomes tests/test_concat.py::test_concat_stranded_unstranded [gw21] [ 0%] PASSED tests/test_concat.py::test_concat_unstranded_stranded tests/test_count_overlaps.py::test_strand_vs_strand_same [gw20] [ 0%] PASSED tests/test_concat.py::test_concat_stranded_unstranded tests/test_concat.py::test_concat_unstranded_unstranded [gw20] [ 0%] PASSED tests/test_concat.py::test_concat_unstranded_unstranded tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain61-method_chain61] [gw21] [ 0%] PASSED tests/test_count_overlaps.py::test_strand_vs_strand_same tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain0-method_chain0] [gw0] [ 1%] PASSED tests/data/test_data.py::test_all_data tests/test_binary.py::test_set_intersect[False] [gw33] [ 1%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain31-method_chain31] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain32-method_chain32] [gw27] [ 1%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain16-method_chain16] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain17-method_chain17] [gw32] [ 1%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain34-method_chain34] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain35-method_chain35] [gw30] [ 1%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain25-method_chain25] [gw37] [ 2%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain43-method_chain43] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain44-method_chain44] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain26-method_chain26] [gw34] [ 2%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain46-method_chain46] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain47-method_chain47] [gw29] [ 2%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain22-method_chain22] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain23-method_chain23] [gw31] [ 2%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain28-method_chain28] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain29-method_chain29] [gw20] [ 2%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain61-method_chain61] [gw28] [ 3%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain19-method_chain19] [gw41] [ 3%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain58-method_chain58] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain20-method_chain20] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain59-method_chain59] [gw26] [ 3%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain13-method_chain13] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain62-method_chain62] [gw23] [ 3%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain4-method_chain4] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain14-method_chain14] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain5-method_chain5] [gw25] [ 3%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain10-method_chain10] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain11-method_chain11] [gw40] [ 3%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain55-method_chain55] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain56-method_chain56] [gw24] [ 4%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain7-method_chain7] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain8-method_chain8] [gw35] [ 4%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain37-method_chain37] [gw39] [ 4%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain52-method_chain52] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain38-method_chain38] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain53-method_chain53] [gw22] [ 4%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain1-method_chain1] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain2-method_chain2] [gw38] [ 4%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain49-method_chain49] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain50-method_chain50] [gw21] [ 5%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain0-method_chain0] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain64-method_chain64] [gw27] [ 5%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain17-method_chain17] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain18-method_chain18] [gw33] [ 5%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain32-method_chain32] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain33-method_chain33] [gw36] [ 5%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain40-method_chain40] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain41-method_chain41] [gw37] [ 5%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain44-method_chain44] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain45-method_chain45] [gw34] [ 6%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain47-method_chain47] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain48-method_chain48] [gw28] [ 6%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain20-method_chain20] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain21-method_chain21] [gw31] [ 6%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain29-method_chain29] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain30-method_chain30] [gw29] [ 6%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain23-method_chain23] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain24-method_chain24] [gw30] [ 6%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain26-method_chain26] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain27-method_chain27] [gw20] [ 6%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain62-method_chain62] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain63-method_chain63] [gw41] [ 7%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain59-method_chain59] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain60-method_chain60] [gw25] [ 7%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain11-method_chain11] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain12-method_chain12] [gw26] [ 7%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain14-method_chain14] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain15-method_chain15] [gw40] [ 7%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain56-method_chain56] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain57-method_chain57] [gw32] [ 7%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain35-method_chain35] [gw24] [ 8%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain8-method_chain8] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain9-method_chain9] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain36-method_chain36] [gw39] [ 8%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain53-method_chain53] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain54-method_chain54] [gw21] [ 8%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain64-method_chain64] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain65-method_chain65] [gw27] [ 8%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain18-method_chain18] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain67-method_chain67] [gw33] [ 8%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain33-method_chain33] [gw22] [ 9%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain2-method_chain2] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain70-method_chain70] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain3-method_chain3] [gw37] [ 9%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain45-method_chain45] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain73-method_chain73] [gw23] [ 9%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain5-method_chain5] [gw35] [ 9%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain38-method_chain38] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain6-method_chain6] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain39-method_chain39] [gw31] [ 9%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain30-method_chain30] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain82-method_chain82] [gw30] [ 9%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain27-method_chain27] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain88-method_chain88] [gw34] [ 10%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain48-method_chain48] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain76-method_chain76] [gw36] [ 10%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain41-method_chain41] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain42-method_chain42] [gw29] [ 10%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain24-method_chain24] [gw38] [ 10%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain50-method_chain50] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain51-method_chain51] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain85-method_chain85] [gw28] [ 10%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain21-method_chain21] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain79-method_chain79] [gw20] [ 11%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain63-method_chain63] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain91-method_chain91] [gw26] [ 11%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain15-method_chain15] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain100-method_chain100] [gw41] [ 11%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain60-method_chain60] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain94-method_chain94] [gw21] [ 11%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain65-method_chain65] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain66-method_chain66] [gw25] [ 11%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain12-method_chain12] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain97-method_chain97] [gw27] [ 12%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain67-method_chain67] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain68-method_chain68] [gw40] [ 12%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain57-method_chain57] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain103-method_chain103] [gw24] [ 12%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain9-method_chain9] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain106-method_chain106] [gw37] [ 12%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain73-method_chain73] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain74-method_chain74] [gw33] [ 12%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain70-method_chain70] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain71-method_chain71] [gw34] [ 12%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain76-method_chain76] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain77-method_chain77] [gw32] [ 13%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain36-method_chain36] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain109-method_chain109] [gw28] [ 13%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain79-method_chain79] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain80-method_chain80] [gw39] [ 13%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain54-method_chain54] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain112-method_chain112] [gw31] [ 13%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain82-method_chain82] [gw35] [ 13%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain39-method_chain39] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain83-method_chain83] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain121-method_chain121] [gw38] [ 14%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain51-method_chain51] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain127-method_chain127] [gw22] [ 14%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain3-method_chain3] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain115-method_chain115] [gw23] [ 14%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain6-method_chain6] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain118-method_chain118] [gw20] [ 14%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain91-method_chain91] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain92-method_chain92] [gw36] [ 14%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain42-method_chain42] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain124-method_chain124] [gw41] [ 15%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain94-method_chain94] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain95-method_chain95] [gw30] [ 15%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain88-method_chain88] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain89-method_chain89] [gw21] [ 15%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain66-method_chain66] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain130-method_chain130] [gw26] [ 15%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain100-method_chain100] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain101-method_chain101] [gw25] [ 15%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain97-method_chain97] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain98-method_chain98] [gw27] [ 16%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain68-method_chain68] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain69-method_chain69] [gw37] [ 16%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain74-method_chain74] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain75-method_chain75] [gw33] [ 16%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain71-method_chain71] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain72-method_chain72] [gw29] [ 16%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain85-method_chain85] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain86-method_chain86] [gw24] [ 16%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain106-method_chain106] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain107-method_chain107] [gw22] [ 16%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain115-method_chain115] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain116-method_chain116] [gw34] [ 17%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain77-method_chain77] [gw28] [ 17%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain80-method_chain80] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain78-method_chain78] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain81-method_chain81] [gw38] [ 17%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain127-method_chain127] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain128-method_chain128] [gw31] [ 17%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain83-method_chain83] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain84-method_chain84] [gw35] [ 17%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain121-method_chain121] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain122-method_chain122] [gw23] [ 18%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain118-method_chain118] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain119-method_chain119] [gw41] [ 18%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain95-method_chain95] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain96-method_chain96] [gw20] [ 18%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain92-method_chain92] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain93-method_chain93] [gw32] [ 18%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain109-method_chain109] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain110-method_chain110] [gw40] [ 18%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain103-method_chain103] [gw39] [ 19%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain112-method_chain112] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain104-method_chain104] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain113-method_chain113] [gw21] [ 19%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain130-method_chain130] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain131-method_chain131] [gw27] [ 19%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain69-method_chain69] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain133-method_chain133] [gw26] [ 19%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain101-method_chain101] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain102-method_chain102] [gw36] [ 19%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain124-method_chain124] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain125-method_chain125] [gw33] [ 19%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain72-method_chain72] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain137-method_chain137] [gw37] [ 20%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain75-method_chain75] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain135-method_chain135] [gw22] [ 20%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain116-method_chain116] [gw24] [ 20%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain107-method_chain107] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain117-method_chain117] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain108-method_chain108] [gw28] [ 20%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain81-method_chain81] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain141-method_chain141] [gw38] [ 20%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain128-method_chain128] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain129-method_chain129] [gw30] [ 21%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain89-method_chain89] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain90-method_chain90] [gw34] [ 21%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain78-method_chain78] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain139-method_chain139] [gw29] [ 21%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain86-method_chain86] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain87-method_chain87] [gw20] [ 21%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain93-method_chain93] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain147-method_chain147] [gw35] [ 21%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain122-method_chain122] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain123-method_chain123] [gw41] [ 22%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain96-method_chain96] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain145-method_chain145] [gw21] [ 22%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain131-method_chain131] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain132-method_chain132] [gw25] [ 22%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain98-method_chain98] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain99-method_chain99] [gw39] [ 22%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain113-method_chain113] [gw32] [ 22%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain110-method_chain110] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain111-method_chain111] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain114-method_chain114] [gw23] [ 22%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain119-method_chain119] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain120-method_chain120] [gw40] [ 23%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain104-method_chain104] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain105-method_chain105] [gw36] [ 23%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain125-method_chain125] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain126-method_chain126] [gw26] [ 23%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain102-method_chain102] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain149-method_chain149] [gw31] [ 23%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain84-method_chain84] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain143-method_chain143] [gw28] [ 23%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain141-method_chain141] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain142-method_chain142] [gw38] [ 24%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain129-method_chain129] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain155-method_chain155] [gw33] [ 24%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain137-method_chain137] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain138-method_chain138] [gw35] [ 24%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain123-method_chain123] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain161-method_chain161] [gw22] [ 24%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain117-method_chain117] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain151-method_chain151] [gw24] [ 24%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain108-method_chain108] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain153-method_chain153] [gw27] [ 25%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain133-method_chain133] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain134-method_chain134] [gw41] [ 25%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain145-method_chain145] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain146-method_chain146] [gw37] [ 25%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain135-method_chain135] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain136-method_chain136] [gw21] [ 25%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain132-method_chain132] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain163-method_chain163] [gw39] [ 25%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain114-method_chain114] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain169-method_chain169] [gw30] [ 25%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain90-method_chain90] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain157-method_chain157] [gw32] [ 26%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain111-method_chain111] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain167-method_chain167] [gw34] [ 26%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain139-method_chain139] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain140-method_chain140] [gw29] [ 26%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain87-method_chain87] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain159-method_chain159] [gw23] [ 26%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain120-method_chain120] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain171-method_chain171] [gw31] [ 26%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain143-method_chain143] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain144-method_chain144] [gw25] [ 27%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain99-method_chain99] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain165-method_chain165] [gw28] [ 27%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain142-method_chain142] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain177-method_chain177] [gw36] [ 27%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain126-method_chain126] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain175-method_chain175] [gw40] [ 27%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain105-method_chain105] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain173-method_chain173] [gw38] [ 27%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain155-method_chain155] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain156-method_chain156] [gw26] [ 28%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain149-method_chain149] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain150-method_chain150] [gw21] [ 28%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain163-method_chain163] [gw20] [ 28%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain147-method_chain147] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain164-method_chain164] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain148-method_chain148] [gw41] [ 28%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain146-method_chain146] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain183-method_chain183] [gw35] [ 28%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain161-method_chain161] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain162-method_chain162] [gw39] [ 29%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain169-method_chain169] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain170-method_chain170] [gw32] [ 29%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain167-method_chain167] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain168-method_chain168] [gw22] [ 29%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain151-method_chain151] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain152-method_chain152] [gw24] [ 29%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain153-method_chain153] [gw30] [ 29%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain157-method_chain157] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain154-method_chain154] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain158-method_chain158] [gw37] [ 29%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain136-method_chain136] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain185-method_chain185] [gw31] [ 30%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain144-method_chain144] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain189-method_chain189] [gw27] [ 30%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain134-method_chain134] [gw33] [ 30%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain138-method_chain138] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain179-method_chain179] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain181-method_chain181] [gw25] [ 30%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain165-method_chain165] [gw23] [ 30%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain171-method_chain171] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain166-method_chain166] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain172-method_chain172] [gw34] [ 31%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain140-method_chain140] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain187-method_chain187] [gw28] [ 31%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain177-method_chain177] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain178-method_chain178] [gw29] [ 31%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain159-method_chain159] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain160-method_chain160] [gw21] [ 31%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain164-method_chain164] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain195-method_chain195] [gw40] [ 31%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain173-method_chain173] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain174-method_chain174] [gw38] [ 32%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain156-method_chain156] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain191-method_chain191] [gw36] [ 32%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain175-method_chain175] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain176-method_chain176] [gw39] [ 32%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain170-method_chain170] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain201-method_chain201] [gw3] [ 32%] PASSED tests/test_binary.py::test_intersect[same] tests/test_binary.py::test_intersect[opposite] [gw35] [ 32%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain162-method_chain162] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain199-method_chain199] [gw13] [ 32%] PASSED tests/test_binary.py::test_join[opposite] tests/test_binary.py::test_reldist [gw41] [ 33%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain183-method_chain183] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain184-method_chain184] [gw32] [ 33%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain168-method_chain168] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain203-method_chain203] [gw33] [ 33%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain179-method_chain179] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain180-method_chain180] [gw2] [ 33%] PASSED tests/test_binary.py::test_overlap[same] [gw26] [ 33%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain150-method_chain150] [gw27] [ 34%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain181-method_chain181] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain193-method_chain193] tests/test_binary.py::test_overlap[opposite] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain182-method_chain182] [gw25] [ 34%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain166-method_chain166] [gw23] [ 34%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain172-method_chain172] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain211-method_chain211] [gw30] [ 34%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain158-method_chain158] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain213-method_chain213] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain209-method_chain209] [gw28] [ 34%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain178-method_chain178] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain215-method_chain215] [gw31] [ 35%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain189-method_chain189] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain190-method_chain190] [gw20] [ 35%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain148-method_chain148] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain197-method_chain197] [gw24] [ 35%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain154-method_chain154] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain207-method_chain207] [gw29] [ 35%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain160-method_chain160] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain216-method_chain216] [gw21] [ 35%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain195-method_chain195] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain196-method_chain196] [gw38] [ 35%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain191-method_chain191] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain192-method_chain192] [gw40] [ 36%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain174-method_chain174] [gw37] [ 36%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain185-method_chain185] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain217-method_chain217] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain186-method_chain186] [gw12] [ 36%] PASSED tests/test_binary.py::test_jaccard[same] tests/test_binary.py::test_join[False] [gw36] [ 36%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain176-method_chain176] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain218-method_chain218] [gw34] [ 36%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain187-method_chain187] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain188-method_chain188] [gw22] [ 37%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain152-method_chain152] [gw26] [ 37%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain193-method_chain193] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain194-method_chain194] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain205-method_chain205] [gw33] [ 37%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain180-method_chain180] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain220-method_chain220] [gw23] [ 37%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain213-method_chain213] [gw9] [ 37%] PASSED tests/test_binary.py::test_nearest[upstream-False-same] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain214-method_chain214] [gw25] [ 38%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain211-method_chain211] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain212-method_chain212] tests/test_binary.py::test_nearest[upstream-False-opposite] [gw32] [ 38%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain203-method_chain203] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain204-method_chain204] [gw31] [ 38%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain190-method_chain190] [gw28] [ 38%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain215-method_chain215] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain223-method_chain223] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain222-method_chain222] [gw30] [ 38%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain209-method_chain209] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain210-method_chain210] [gw11] [ 38%] PASSED tests/test_binary.py::test_nearest[downstream-False-same] [gw24] [ 39%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain207-method_chain207] [gw29] [ 39%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain216-method_chain216] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain224-method_chain224] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain208-method_chain208] tests/test_binary.py::test_nearest[downstream-False-opposite] [gw39] [ 39%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain201-method_chain201] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain202-method_chain202] [gw41] [ 39%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain184-method_chain184] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain219-method_chain219] [gw38] [ 39%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain192-method_chain192] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain226-method_chain226] [gw40] [ 40%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain217-method_chain217] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain227-method_chain227] [gw35] [ 40%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain199-method_chain199] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain200-method_chain200] [gw36] [ 40%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain218-method_chain218] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain229-method_chain229] [gw25] [ 40%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain212-method_chain212] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain234-method_chain234] [gw33] [ 40%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain220-method_chain220] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain232-method_chain232] [gw7] [ 41%] PASSED tests/test_binary.py::test_nearest[None-False-same] [gw0] [ 41%] PASSED tests/test_binary.py::test_set_intersect[False] tests/test_binary.py::test_nearest[None-False-opposite] tests/test_binary.py::test_set_intersect[same] [gw27] [ 41%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain182-method_chain182] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain221-method_chain221] [gw20] [ 41%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain197-method_chain197] [gw26] [ 41%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain194-method_chain194] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain198-method_chain198] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain231-method_chain231] [gw37] [ 41%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain186-method_chain186] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain228-method_chain228] [gw23] [ 42%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain214-method_chain214] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain233-method_chain233] [gw21] [ 42%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain196-method_chain196] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain225-method_chain225] [gw22] [ 42%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain205-method_chain205] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain206-method_chain206] [gw31] [ 42%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain223-method_chain223] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain236-method_chain236] [gw8] [ 42%] PASSED tests/test_binary.py::test_nearest[upstream-True-same] tests/test_binary.py::test_nearest[upstream-True-opposite] [gw34] [ 43%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain188-method_chain188] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain230-method_chain230] [gw32] [ 43%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain204-method_chain204] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain235-method_chain235] [gw29] [ 43%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain224-method_chain224] [gw28] [ 43%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain222-method_chain222] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain240-method_chain240] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain237-method_chain237] [gw30] [ 43%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain210-method_chain210] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain238-method_chain238] [gw40] [ 44%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain227-method_chain227] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain244-method_chain244] [gw38] [ 44%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain226-method_chain226] [gw41] [ 44%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain219-method_chain219] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain243-method_chain243] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain242-method_chain242] [gw24] [ 44%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain208-method_chain208] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain239-method_chain239] [gw36] [ 44%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain229-method_chain229] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain246-method_chain246] [gw39] [ 45%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain202-method_chain202] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain241-method_chain241] [gw37] [ 45%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain228-method_chain228] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain253-method_chain253] [gw35] [ 45%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain200-method_chain200] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain245-method_chain245] [gw21] [ 45%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain225-method_chain225] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain255-method_chain255] [gw27] [ 45%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain221-method_chain221] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain250-method_chain250] [gw22] [ 45%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain206-method_chain206] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain256-method_chain256] [gw10] [ 46%] PASSED tests/test_binary.py::test_nearest[downstream-True-same] tests/test_binary.py::test_nearest[downstream-True-opposite] [gw34] [ 46%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain230-method_chain230] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain258-method_chain258] [gw29] [ 46%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain240-method_chain240] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain260-method_chain260] [gw41] [ 46%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain242-method_chain242] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain265-method_chain265] [gw40] [ 46%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain244-method_chain244] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain263-method_chain263] [gw23] [ 47%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain233-method_chain233] [gw33] [ 47%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain232-method_chain232] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain254-method_chain254] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain248-method_chain248] [gw25] [ 47%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain234-method_chain234] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain247-method_chain247] [gw20] [ 47%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain198-method_chain198] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain251-method_chain251] [gw6] [ 47%] PASSED tests/test_binary.py::test_nearest[None-True-same] [gw30] [ 48%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain238-method_chain238] [gw24] [ 48%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain239-method_chain239] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain262-method_chain262] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain266-method_chain266] tests/test_binary.py::test_nearest[None-True-opposite] [gw38] [ 48%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain243-method_chain243] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain264-method_chain264] [gw32] [ 48%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain235-method_chain235] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain259-method_chain259] [gw26] [ 48%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain231-method_chain231] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain252-method_chain252] [gw39] [ 48%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain241-method_chain241] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain268-method_chain268] [gw14] [ 49%] PASSED tests/test_binary.py::test_k_nearest[downstream-False-same-last] tests/test_binary.py::test_k_nearest[downstream-False-False-last] [gw31] [ 49%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain236-method_chain236] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain257-method_chain257] [gw16] [ 49%] PASSED tests/test_binary.py::test_k_nearest[upstream-False-same-last] tests/test_binary.py::test_k_nearest[upstream-False-False-last] [gw28] [ 49%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain237-method_chain237] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain261-method_chain261] [gw37] [ 49%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain253-method_chain253] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain269-method_chain269] [gw21] [ 50%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain255-method_chain255] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain271-method_chain271] [gw41] [ 50%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain265-method_chain265] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain276-method_chain276] [gw40] [ 50%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain263-method_chain263] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain277-method_chain277] [gw22] [ 50%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain256-method_chain256] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain273-method_chain273] [gw29] [ 50%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain260-method_chain260] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain275-method_chain275] [gw36] [ 51%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain246-method_chain246] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain267-method_chain267] [gw34] [ 51%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain258-method_chain258] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain274-method_chain274] [gw30] [ 51%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain262-method_chain262] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain282-method_chain282] [gw23] [ 51%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain254-method_chain254] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain278-method_chain278] [gw38] [ 51%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain264-method_chain264] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain284-method_chain284] [gw39] [ 51%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain268-method_chain268] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain287-method_chain287] [gw25] [ 52%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain247-method_chain247] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain280-method_chain280] [gw24] [ 52%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain266-method_chain266] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain283-method_chain283] [gw28] [ 52%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain261-method_chain261] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain289-method_chain289] [gw32] [ 52%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain259-method_chain259] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain285-method_chain285] [gw33] [ 52%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain248-method_chain248] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain279-method_chain279] [gw35] [ 53%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain245-method_chain245] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain270-method_chain270] [gw31] [ 53%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain257-method_chain257] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain288-method_chain288] [gw1] [ 53%] PASSED tests/test_binary.py::test_set_union[False] [gw29] [ 53%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain275-method_chain275] [gw40] [ 53%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain277-method_chain277] [gw20] [ 54%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain251-method_chain251] [gw26] [ 54%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain252-method_chain252] [gw41] [ 54%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain276-method_chain276] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain295-method_chain295] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain293-method_chain293] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain281-method_chain281] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain292-method_chain292] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain286-method_chain286] tests/test_binary.py::test_set_union[same] [gw37] [ 54%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain269-method_chain269] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain290-method_chain290] [gw34] [ 54%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain274-method_chain274] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain297-method_chain297] [gw21] [ 54%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain271-method_chain271] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain291-method_chain291] [gw27] [ 55%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain250-method_chain250] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain272-method_chain272] [gw36] [ 55%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain267-method_chain267] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain296-method_chain296] [gw22] [ 55%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain273-method_chain273] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain294-method_chain294] [gw23] [ 55%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain278-method_chain278] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain299-method_chain299] [gw28] [ 55%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain289-method_chain289] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain304-method_chain304] [gw33] [ 56%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain279-method_chain279] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain306-method_chain306] [gw30] [ 56%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain282-method_chain282] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain298-method_chain298] [gw31] [ 56%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain288-method_chain288] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain308-method_chain308] [gw35] [ 56%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain270-method_chain270] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain307-method_chain307] [gw38] [ 56%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain284-method_chain284] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain300-method_chain300] [gw39] [ 57%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain287-method_chain287] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain301-method_chain301] [gw18] [ 57%] PASSED tests/test_binary.py::test_k_nearest[None-False-same-last] tests/test_binary.py::test_k_nearest[None-False-False-last] [gw4] [ 57%] PASSED tests/test_binary.py::test_coverage[same] [gw37] [ 57%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain290-method_chain290] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain314-method_chain314] [gw41] [ 57%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain292-method_chain292] [gw40] [ 58%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain293-method_chain293] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain312-method_chain312] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain310-method_chain310] tests/test_binary.py::test_coverage[opposite] [gw21] [ 58%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain291-method_chain291] [gw24] [ 58%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain283-method_chain283] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain303-method_chain303] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain316-method_chain316] [gw27] [ 58%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain272-method_chain272] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain317-method_chain317] [gw26] [ 58%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain286-method_chain286] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain313-method_chain313] [gw32] [ 58%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain285-method_chain285] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain305-method_chain305] [gw36] [ 59%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain296-method_chain296] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain318-method_chain318] [gw25] [ 59%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain280-method_chain280] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain302-method_chain302] [gw20] [ 59%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain281-method_chain281] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain311-method_chain311] [gw29] [ 59%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain295-method_chain295] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain309-method_chain309] [gw34] [ 59%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain297-method_chain297] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain315-method_chain315] [gw28] [ 60%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain304-method_chain304] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain321-method_chain321] [gw23] [ 60%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain299-method_chain299] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain320-method_chain320] [gw35] [ 60%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain307-method_chain307] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain325-method_chain325] [gw37] [ 60%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain314-method_chain314] [gw33] [ 60%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain306-method_chain306] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain322-method_chain322] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain328-method_chain328] [gw15] [ 61%] PASSED tests/test_binary.py::test_k_nearest[downstream-True-same-last] [gw40] [ 61%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain310-method_chain310] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain330-method_chain330] tests/test_binary.py::test_k_nearest[downstream-True-False-last] [gw31] [ 61%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain308-method_chain308] [gw41] [ 61%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain312-method_chain312] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain324-method_chain324] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain329-method_chain329] [gw21] [ 61%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain316-method_chain316] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain332-method_chain332] [gw30] [ 61%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain298-method_chain298] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain323-method_chain323] [gw5] [ 62%] PASSED tests/test_binary.py::test_subtraction[opposite] tests/test_binary.py::test_subtraction[False] [gw22] [ 62%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain294-method_chain294] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain319-method_chain319] [gw39] [ 62%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain301-method_chain301] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain327-method_chain327] [gw24] [ 62%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain303-method_chain303] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain331-method_chain331] [gw38] [ 62%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain300-method_chain300] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain326-method_chain326] [gw27] [ 63%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain317-method_chain317] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain333-method_chain333] [gw17] [ 63%] PASSED tests/test_binary.py::test_k_nearest[upstream-True-same-last] tests/test_binary.py::test_k_nearest[upstream-True-False-last] [gw36] [ 63%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain318-method_chain318] [gw26] [ 63%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain313-method_chain313] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain336-method_chain336] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain334-method_chain334] [gw32] [ 63%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain305-method_chain305] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain335-method_chain335] [gw20] [ 64%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain311-method_chain311] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain338-method_chain338] [gw25] [ 64%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain302-method_chain302] [gw29] [ 64%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain309-method_chain309] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain337-method_chain337] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain339-method_chain339] [gw28] [ 64%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain321-method_chain321] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain341-method_chain341] [gw35] [ 64%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain325-method_chain325] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain343-method_chain343] [gw37] [ 64%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain328-method_chain328] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain345-method_chain345] [gw31] [ 65%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain324-method_chain324] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain347-method_chain347] [gw30] [ 65%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain323-method_chain323] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain350-method_chain350] [gw33] [ 65%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain322-method_chain322] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain344-method_chain344] [gw23] [ 65%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain320-method_chain320] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain342-method_chain342] [gw38] [ 65%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain326-method_chain326] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain354-method_chain354] [gw34] [ 66%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain315-method_chain315] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain340-method_chain340] [gw22] [ 66%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain319-method_chain319] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain351-method_chain351] [gw40] [ 66%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain330-method_chain330] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain346-method_chain346] [gw39] [ 66%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain327-method_chain327] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain352-method_chain352] [gw21] [ 66%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain332-method_chain332] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain349-method_chain349] [gw24] [ 67%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain331-method_chain331] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain353-method_chain353] [gw29] [ 67%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain339-method_chain339] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain361-method_chain361] [gw41] [ 67%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain329-method_chain329] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain348-method_chain348] [gw25] [ 67%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain337-method_chain337] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain360-method_chain360] [gw27] [ 67%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain333-method_chain333] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain355-method_chain355] [gw36] [ 67%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain336-method_chain336] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain356-method_chain356] [gw20] [ 68%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain338-method_chain338] [gw13] [ 68%] PASSED tests/test_binary.py::test_reldist tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain359-method_chain359] tests/test_binary.py::test_k_nearest[downstream-False-opposite-last] [gw28] [ 68%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain341-method_chain341] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain362-method_chain362] [gw37] [ 68%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain345-method_chain345] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain364-method_chain364] [gw3] [ 68%] PASSED tests/test_binary.py::test_intersect[opposite] tests/test_binary.py::test_coverage[False] [gw19] [ 69%] PASSED tests/test_binary.py::test_k_nearest[None-True-same-last] tests/test_binary.py::test_k_nearest[None-True-False-last] [gw23] [ 69%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain342-method_chain342] [gw38] [ 69%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain354-method_chain354] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain368-method_chain368] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain369-method_chain369] [gw34] [ 69%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain340-method_chain340] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain370-method_chain370] [gw32] [ 69%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain335-method_chain335] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain358-method_chain358] [gw31] [ 70%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain347-method_chain347] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain365-method_chain365] [gw26] [ 70%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain334-method_chain334] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain357-method_chain357] [gw22] [ 70%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain351-method_chain351] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain371-method_chain371] [gw2] [ 70%] PASSED tests/test_binary.py::test_overlap[opposite] tests/test_binary.py::test_intersect[False] [gw30] [ 70%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain350-method_chain350] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain366-method_chain366] [gw35] [ 70%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain343-method_chain343] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain363-method_chain363] [gw29] [ 71%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain361-method_chain361] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain376-method_chain376] [gw25] [ 71%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain360-method_chain360] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain378-method_chain378] [gw39] [ 71%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain352-method_chain352] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain373-method_chain373] [gw33] [ 71%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain344-method_chain344] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain367-method_chain367] [gw21] [ 71%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain349-method_chain349] [gw20] [ 72%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain359-method_chain359] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain381-method_chain381] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain374-method_chain374] [gw24] [ 72%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain353-method_chain353] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain375-method_chain375] [gw36] [ 72%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain356-method_chain356] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain380-method_chain380] [gw40] [ 72%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain346-method_chain346] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain372-method_chain372] [gw28] [ 72%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain362-method_chain362] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain383-method_chain383] [gw27] [ 73%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain355-method_chain355] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain379-method_chain379] [gw23] [ 73%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain368-method_chain368] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain386-method_chain386] [gw34] [ 73%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain370-method_chain370] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain388-method_chain388] [gw32] [ 73%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain358-method_chain358] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain389-method_chain389] [gw38] [ 73%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain369-method_chain369] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain387-method_chain387] [gw37] [ 74%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain364-method_chain364] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain384-method_chain384] [gw31] [ 74%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain365-method_chain365] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain390-method_chain390] [gw26] [ 74%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain357-method_chain357] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain391-method_chain391] [gw30] [ 74%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain366-method_chain366] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain394-method_chain394] [gw22] [ 74%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain371-method_chain371] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain392-method_chain392] [gw35] [ 74%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain363-method_chain363] [gw39] [ 75%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain373-method_chain373] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain395-method_chain395] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain398-method_chain398] [gw41] [ 75%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain348-method_chain348] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain377-method_chain377] [gw33] [ 75%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain367-method_chain367] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain399-method_chain399] [gw24] [ 75%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain375-method_chain375] [gw21] [ 75%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain374-method_chain374] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain402-method_chain402] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain401-method_chain401] [gw29] [ 76%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain376-method_chain376] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain396-method_chain396] [gw40] [ 76%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain372-method_chain372] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain404-method_chain404] [gw36] [ 76%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain380-method_chain380] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain403-method_chain403] [gw23] [ 76%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain386-method_chain386] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain407-method_chain407] [gw32] [ 76%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain389-method_chain389] [gw34] [ 77%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain388-method_chain388] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain409-method_chain409] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain408-method_chain408] [gw26] [ 77%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain391-method_chain391] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain413-method_chain413] [gw20] [ 77%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain381-method_chain381] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain400-method_chain400] [gw38] [ 77%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain387-method_chain387] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain410-method_chain410] [gw25] [ 77%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain378-method_chain378] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain397-method_chain397] [gw41] [ 77%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain377-method_chain377] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain418-method_chain418] [gw27] [ 78%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain379-method_chain379] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain406-method_chain406] [gw31] [ 78%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain390-method_chain390] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain412-method_chain412] [gw28] [ 78%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain383-method_chain383] [gw37] [ 78%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain384-method_chain384] [gw30] [ 78%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain394-method_chain394] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain405-method_chain405] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain411-method_chain411] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain414-method_chain414] [gw33] [ 79%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain399-method_chain399] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain419-method_chain419] [gw21] [ 79%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain401-method_chain401] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain421-method_chain421] [gw12] [ 79%] PASSED tests/test_binary.py::test_join[False] [gw24] [ 79%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain402-method_chain402] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain420-method_chain420] tests/test_binary.py::test_join[same] [gw36] [ 79%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain403-method_chain403] [gw40] [ 80%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain404-method_chain404] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain424-method_chain424] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain423-method_chain423] [gw35] [ 80%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain395-method_chain395] [gw11] [ 80%] PASSED tests/test_binary.py::test_nearest[downstream-False-opposite] [gw39] [ 80%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain398-method_chain398] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain416-method_chain416] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain417-method_chain417] tests/test_binary.py::test_jaccard[False] [gw38] [ 80%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain410-method_chain410] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain430-method_chain430] [gw9] [ 80%] PASSED tests/test_binary.py::test_nearest[upstream-False-opposite] [gw32] [ 81%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain409-method_chain409] [gw23] [ 81%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain407-method_chain407] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain426-method_chain426] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain425-method_chain425] tests/test_binary.py::test_nearest[downstream-True-False] [gw34] [ 81%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain408-method_chain408] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain427-method_chain427] [gw26] [ 81%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain413-method_chain413] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain428-method_chain428] [gw29] [ 81%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain396-method_chain396] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain422-method_chain422] [gw22] [ 82%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain392-method_chain392] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain415-method_chain415] [gw31] [ 82%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain412-method_chain412] [gw20] [ 82%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain400-method_chain400] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain434-method_chain434] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain429-method_chain429] [gw37] [ 82%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain411-method_chain411] [gw28] [ 82%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain405-method_chain405] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain436-method_chain436] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain435-method_chain435] [gw33] [ 83%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain419-method_chain419] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain438-method_chain438] [gw41] [ 83%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain418-method_chain418] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain432-method_chain432] [gw30] [ 83%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain414-method_chain414] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain437-method_chain437] [gw21] [ 83%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain421-method_chain421] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain439-method_chain439] [gw27] [ 83%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain406-method_chain406] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain433-method_chain433] [gw40] [ 83%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain423-method_chain423] tests/test_getset_attr.py::test_getsetattr_fails [gw40] [ 84%] PASSED tests/test_getset_attr.py::test_getsetattr_fails tests/windows/test_windows.py::test_windows [gw40] [ 84%] PASSED tests/windows/test_windows.py::test_windows tests/windows/test_windows.py::test_windows2 [gw40] [ 84%] PASSED tests/windows/test_windows.py::test_windows2 [gw36] [ 84%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain424-method_chain424] tests/test_getset_attr.py::test_getsetattr [gw36] [ 84%] PASSED tests/test_getset_attr.py::test_getsetattr [gw39] [ 85%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain417-method_chain417] tests/test_io.py::test_read_gtf [gw39] [ 85%] PASSED tests/test_io.py::test_read_gtf [gw7] [ 85%] PASSED tests/test_binary.py::test_nearest[None-False-opposite] [gw8] [ 85%] PASSED tests/test_binary.py::test_nearest[upstream-True-opposite] tests/test_binary.py::test_nearest[upstream-True-False] [gw35] [ 85%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain416-method_chain416] [gw32] [ 86%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain426-method_chain426] tests/test_binary.py::test_nearest[upstream-False-False] tests/test_getset_attr.py::test_getsetattr_with_str tests/test_pickle.py::test_pickle [gw32] [ 86%] PASSED tests/test_pickle.py::test_pickle [gw35] [ 86%] PASSED tests/test_getset_attr.py::test_getsetattr_with_str [gw23] [ 86%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain425-method_chain425] [gw29] [ 86%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain422-method_chain422] tests/test_unary.py::test_cluster[True] [gw24] [ 87%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain420-method_chain420] tests/test_stranded.py::test_stranded tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain440-method_chain440] [gw23] [ 87%] PASSED tests/test_stranded.py::test_stranded [gw22] [ 87%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain415-method_chain415] tests/test_unary.py::test_cluster[False] [gw25] [ 87%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain397-method_chain397] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain431-method_chain431] [gw33] [ 87%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain438-method_chain438] tests/test_unary.py::test_windows [gw28] [ 87%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain435-method_chain435] [gw31] [ 88%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain434-method_chain434] tests/test_unary.py::test_merge_by[False] tests/test_unary.py::test_cluster_by[True] [gw37] [ 88%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain436-method_chain436] tests/test_unary.py::test_merge_by[True] [gw30] [ 88%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain437-method_chain437] tests/test_unary.py::test_init[False] [gw38] [ 88%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain430-method_chain430] tests/test_io.py::test_read_bed [gw38] [ 88%] PASSED tests/test_io.py::test_read_bed [gw26] [ 89%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain428-method_chain428] tests/test_unary.py::test_merge[False] [gw21] [ 89%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain439-method_chain439] tests/test_unary.py::test_getitem [gw10] [ 89%] PASSED tests/test_binary.py::test_nearest[downstream-True-opposite] [gw20] [ 89%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain429-method_chain429] [gw24] [ 89%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain440-method_chain440] tests/test_binary.py::test_nearest[downstream-False-False] tests/test_unary.py::test_cluster_by[False] [gw34] [ 90%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain427-method_chain427] tests/test_unary.py::test_merge[True] [gw27] [ 90%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain433-method_chain433] tests/test_unary.py::test_summary [gw0] [ 90%] PASSED tests/test_binary.py::test_set_intersect[same] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain249-method_chain249] [gw41] [ 90%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain432-method_chain432] tests/test_unary.py::test_init[True] [gw25] [ 90%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain431-method_chain431] [gw6] [ 90%] PASSED tests/test_binary.py::test_nearest[None-True-opposite] tests/test_binary.py::test_nearest[None-False-False] [gw0] [ 91%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain249-method_chain249] [gw30] [ 91%] PASSED tests/test_unary.py::test_init[False] [gw41] [ 91%] PASSED tests/test_unary.py::test_init[True] [gw1] [ 91%] PASSED tests/test_binary.py::test_set_union[same] tests/test_binary.py::test_overlap[False] [gw16] [ 91%] PASSED tests/test_binary.py::test_k_nearest[upstream-False-False-last] tests/test_binary.py::test_k_nearest[upstream-True-opposite-last] [gw21] [ 92%] PASSED tests/test_unary.py::test_getitem [gw2] [ 92%] PASSED tests/test_binary.py::test_intersect[False] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain393-method_chain393] [gw14] [ 92%] PASSED tests/test_binary.py::test_k_nearest[downstream-False-False-last] tests/test_binary.py::test_k_nearest[downstream-True-opposite-last] [gw4] [ 92%] PASSED tests/test_binary.py::test_coverage[opposite] [gw2] [ 92%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain393-method_chain393] tests/test_binary.py::test_subtraction[same] [gw13] [ 93%] PASSED tests/test_binary.py::test_k_nearest[downstream-False-opposite-last] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain382-method_chain382] [gw12] [ 93%] PASSED tests/test_binary.py::test_join[same] tests/test_genomicfeatures.py::test_introns_single [gw27] [ 93%] PASSED tests/test_unary.py::test_summary [gw18] [ 93%] PASSED tests/test_binary.py::test_k_nearest[None-False-False-last] tests/test_binary.py::test_k_nearest[None-True-opposite-last] [gw13] [ 93%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain382-method_chain382] [gw5] [ 93%] PASSED tests/test_binary.py::test_subtraction[False] tests/test_binary.py::test_nearest[None-True-False] [gw12] [ 94%] PASSED tests/test_genomicfeatures.py::test_introns_single [gw11] [ 94%] PASSED tests/test_binary.py::test_jaccard[False] tests/test_io.py::test_read_gff3 [gw11] [ 94%] PASSED tests/test_io.py::test_read_gff3 [gw26] [ 94%] PASSED tests/test_unary.py::test_merge[False] [gw8] [ 94%] PASSED tests/test_binary.py::test_nearest[upstream-False-False] [gw3] [ 95%] PASSED tests/test_binary.py::test_coverage[False] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain385-method_chain385] [gw15] [ 95%] PASSED tests/test_binary.py::test_k_nearest[downstream-True-False-last] tests/test_binary.py::test_k_nearest[upstream-False-opposite-last] [gw9] [ 95%] PASSED tests/test_binary.py::test_nearest[downstream-True-False] tests/test_stranded.py::test_unstrand [gw9] [ 95%] PASSED tests/test_stranded.py::test_unstrand [gw10] [ 95%] PASSED tests/test_binary.py::test_nearest[downstream-False-False] [gw34] [ 96%] PASSED tests/test_unary.py::test_merge[True] [gw28] [ 96%] PASSED tests/test_unary.py::test_merge_by[False] [gw7] [ 96%] PASSED tests/test_binary.py::test_nearest[upstream-True-False] [gw3] [ 96%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain385-method_chain385] [gw37] [ 96%] PASSED tests/test_unary.py::test_merge_by[True] [gw33] [ 96%] PASSED tests/test_unary.py::test_windows [gw17] [ 97%] PASSED tests/test_binary.py::test_k_nearest[upstream-True-False-last] tests/test_binary.py::test_k_nearest[None-False-opposite-last] [gw1] [ 97%] PASSED tests/test_binary.py::test_overlap[False] [gw6] [ 97%] PASSED tests/test_binary.py::test_nearest[None-False-False] [gw29] [ 97%] PASSED tests/test_unary.py::test_cluster[True] [gw19] [ 97%] PASSED tests/test_binary.py::test_k_nearest[None-True-False-last] tests/test_binary.py::test_k_nearest_1_vs_nearest [gw22] [ 98%] PASSED tests/test_unary.py::test_cluster[False] [gw31] [ 98%] PASSED tests/test_unary.py::test_cluster_by[True] [gw16] [ 98%] PASSED tests/test_binary.py::test_k_nearest[upstream-True-opposite-last] [gw14] [ 98%] PASSED tests/test_binary.py::test_k_nearest[downstream-True-opposite-last] [gw5] [ 98%] PASSED tests/test_binary.py::test_nearest[None-True-False] [gw15] [ 99%] PASSED tests/test_binary.py::test_k_nearest[upstream-False-opposite-last] [gw4] [ 99%] PASSED tests/test_binary.py::test_subtraction[same] [gw20] [ 99%] PASSED tests/test_unary.py::test_cluster_by[False] [gw18] [ 99%] PASSED tests/test_binary.py::test_k_nearest[None-True-opposite-last] [gw17] [ 99%] PASSED tests/test_binary.py::test_k_nearest[None-False-opposite-last] [gw19] [100%] PASSED tests/test_binary.py::test_k_nearest_1_vs_nearest =============================== warnings summary =============================== tests/conftest.py:83 /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/conftest.py:83: SyntaxWarning: invalid escape sequence '\s' sep="\s+", pyranges/__init__.py:18: 43 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/__init__.py:18: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html import pkg_resources tests/test_binary.py:118: 42 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_binary.py:118: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) tests/test_binary.py:139: 42 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_binary.py:139: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) tests/test_binary.py:160: 42 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_binary.py:160: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) tests/test_binary.py:187: 42 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_binary.py:187: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) tests/test_binary.py:212: 42 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_binary.py:212: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) tests/test_binary.py:291: 42 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_binary.py:291: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) tests/test_binary.py:329: 42 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_binary.py:329: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) tests/test_binary.py:368: 42 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_binary.py:368: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) tests/test_binary.py:392: 42 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_binary.py:392: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) tests/test_binary.py:426: 42 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_binary.py:426: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) tests/test_binary.py:516: 42 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_binary.py:516: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) tests/test_binary.py:579: 42 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_binary.py:579: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) pyranges/methods/init.py:60: 210 warnings .pybuild/cpython3_3.12_pyranges/build/tests/test_change_chromosome_custom.py: 2 warnings .pybuild/cpython3_3.12_pyranges/build/tests/test_concat.py: 8 warnings .pybuild/cpython3_3.12_pyranges/build/tests/test_count_overlaps.py: 1 warning .pybuild/cpython3_3.12_pyranges/build/tests/data/test_data.py: 9 warnings .pybuild/cpython3_3.12_pyranges/build/tests/test_do_not_error.py: 159782 warnings .pybuild/cpython3_3.12_pyranges/build/tests/test_binary.py: 160279 warnings .pybuild/cpython3_3.12_pyranges/build/tests/test_getset_attr.py: 3 warnings .pybuild/cpython3_3.12_pyranges/build/tests/windows/test_windows.py: 2 warnings .pybuild/cpython3_3.12_pyranges/build/tests/test_io.py: 4 warnings .pybuild/cpython3_3.12_pyranges/build/tests/test_pickle.py: 1 warning .pybuild/cpython3_3.12_pyranges/build/tests/test_stranded.py: 6 warnings .pybuild/cpython3_3.12_pyranges/build/tests/test_unary.py: 24083 warnings .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py: 358 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/methods/init.py:60: FutureWarning: The default of observed=False is deprecated and will be changed to True in a future version of pandas. Pass observed=False to retain current behavior or observed=True to adopt the future default and silence this warning. return {k: v for k, v in df.groupby(grpby_key)} pyranges/methods/init.py:189: 168 warnings .pybuild/cpython3_3.12_pyranges/build/tests/test_change_chromosome_custom.py: 1 warning .pybuild/cpython3_3.12_pyranges/build/tests/test_concat.py: 7 warnings .pybuild/cpython3_3.12_pyranges/build/tests/test_do_not_error.py: 4408 warnings .pybuild/cpython3_3.12_pyranges/build/tests/test_binary.py: 2000 warnings .pybuild/cpython3_3.12_pyranges/build/tests/test_stranded.py: 2 warnings .pybuild/cpython3_3.12_pyranges/build/tests/test_unary.py: 6391 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/methods/init.py:189: FutureWarning: The default of observed=False is deprecated and will be changed to True in a future version of pandas. Pass observed=False to retain current behavior or observed=True to adopt the future default and silence this warning. empty_removed = df.groupby("Chromosome") tests/test_do_not_error.py:46: 42 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_do_not_error.py:46: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) tests/test_unary.py:35: 42 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_unary.py:35: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) tests/test_unary.py:100: 42 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_unary.py:100: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) tests/test_unary.py:163: 42 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_unary.py:163: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) tests/test_unary.py:205: 42 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_unary.py:205: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) tests/test_unary.py:234: 42 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_unary.py:234: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) tests/test_unary.py:272: 42 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_unary.py:272: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) tests/test_unary.py:287: 42 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_unary.py:287: HypothesisDeprecationWarning: The return_value health check is deprecated, because this is always an error. @settings( tests/test_unary.py:315: 42 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_unary.py:315: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) .pybuild/cpython3_3.12_pyranges/build/tests/test_concat.py::test_concat_unstranded_stranded /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/methods/concat.py:47: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[NaN, NaN, NaN, '+', '-'] Categories (3, object): ['+', '-', '.']' has dtype incompatible with category, please explicitly cast to a compatible dtype first. v.loc[:, "Strand"] = type_v.cat.add_categories(["."]) .pybuild/cpython3_3.12_pyranges/build/tests/test_concat.py::test_concat_stranded_unstranded /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/methods/concat.py:47: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['+', '+', '-', NaN, NaN] Categories (3, object): ['+', '-', '.']' has dtype incompatible with category, please explicitly cast to a compatible dtype first. v.loc[:, "Strand"] = type_v.cat.add_categories(["."]) .pybuild/cpython3_3.12_pyranges/build/tests/test_concat.py: 1 warning .pybuild/cpython3_3.12_pyranges/build/tests/test_do_not_error.py: 3073 warnings .pybuild/cpython3_3.12_pyranges/build/tests/test_stranded.py: 2 warnings .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py: 119 warnings .pybuild/cpython3_3.12_pyranges/build/tests/test_unary.py: 5391 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/methods/init.py:187: FutureWarning: The default of observed=False is deprecated and will be changed to True in a future version of pandas. Pass observed=False to retain current behavior or observed=True to adopt the future default and silence this warning. empty_removed = df.groupby(["Chromosome", "Strand"]) .pybuild/cpython3_3.12_pyranges/build/tests/test_do_not_error.py: 7007 warnings .pybuild/cpython3_3.12_pyranges/build/tests/test_binary.py: 16456 warnings .pybuild/cpython3_3.12_pyranges/build/tests/test_unary.py: 15688 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/tostring2.py:31: FutureWarning: The behavior of DataFrame concatenation with empty or all-NA entries is deprecated. In a future version, this will no longer exclude empty or all-NA columns when determining the result dtypes. To retain the old behavior, exclude the relevant entries before the concat operation. df = pd.concat([plus, minus]) .pybuild/cpython3_3.12_pyranges/build/tests/test_do_not_error.py: 1474 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/pyranges.py:3779: FutureWarning: The behavior of Series.replace (and DataFrame.replace) with CategoricalDtype is deprecated. In a future version, replace will only be used for cases that preserve the categories. To change the categories, use ser.cat.rename_categories instead. other.Strand = other.Strand.replace({"+": "-", "-": "+"}) .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1217804. 1221351. 1223357. 1223968. 1227319. 1228946. 1232031.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000078808.16' 'ENSG00000078808.16' 'ENSG00000078808.16' 'ENSG00000078808.16' 'ENSG00000078808.16' 'ENSG00000078808.16']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1336515. 1337055. 1338183. 1338436. 1338653. 1339812. 1340190. 1340365. 1340503. 1342156. 1342484. 1342758. 1349350.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000107404.19' 'ENSG00000107404.19' 'ENSG00000107404.19' 'ENSG00000107404.19' 'ENSG00000107404.19' 'ENSG00000107404.19' 'ENSG00000107404.19' 'ENSG00000107404.19' 'ENSG00000107404.19' 'ENSG00000107404.19' 'ENSG00000107404.19' 'ENSG00000107404.19']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1311924. 1312147. 1313592. 1315697. 1317450. 1321096. 1321984. 1323287. 1324691.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000127054.20' 'ENSG00000127054.20' 'ENSG00000127054.20' 'ENSG00000127054.20' 'ENSG00000127054.20' 'ENSG00000127054.20' 'ENSG00000127054.20' 'ENSG00000127054.20']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1293708. 1293933. 1294199. 1294628. 1295008. 1295554. 1295938. 1296109. 1296280. 1296633. 1297933. 1298265. 1298421. 1299905. 1300068. 1300202. 1300692. 1302046. 1302975. 1305929. 1307156. 1307383. 1308018. 1309609.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1084506. 1085310. 1086012. 1087636. 1092294. 1092813. 1106127. 1106871. 1115075. 1116361.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000131591.17' 'ENSG00000131591.17' 'ENSG00000131591.17' 'ENSG00000131591.17' 'ENSG00000131591.17' 'ENSG00000131591.17' 'ENSG00000131591.17' 'ENSG00000131591.17' 'ENSG00000131591.17']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1472089. 1477350. 1478745. 1479108. 1480936. 1482303. 1482662. 1485171. 1486235. 1486668. 1487914. 1490671. 1497848.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000160072.19' 'ENSG00000160072.19' 'ENSG00000160072.19' 'ENSG00000160072.19' 'ENSG00000160072.19' 'ENSG00000160072.19' 'ENSG00000160072.19' 'ENSG00000160072.19' 'ENSG00000160072.19' 'ENSG00000160072.19' 'ENSG00000160072.19' 'ENSG00000160072.19']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1255487. 1256335. 1257130. 1257310. 1262390. 1263569. 1264830. 1266290. 1267992. 1271637. 1273885.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000160087.20' 'ENSG00000160087.20' 'ENSG00000160087.20' 'ENSG00000160087.20' 'ENSG00000160087.20' 'ENSG00000160087.20' 'ENSG00000160087.20' 'ENSG00000160087.20' 'ENSG00000160087.20' 'ENSG00000160087.20']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1173926. 1174321. 1174489. 1175034. 1179333. 1179853. 1180340. 1180884. 1181815. 1182446. 1183047. 1184091. 1185864. 1196488. 1196716. 1197186. 1197935.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000162571.13' 'ENSG00000162571.13' 'ENSG00000162571.13' 'ENSG00000162571.13' 'ENSG00000162571.13' 'ENSG00000162571.13' 'ENSG00000162571.13' 'ENSG00000162571.13' 'ENSG00000162571.13' 'ENSG00000162571.13' 'ENSG00000162571.13' 'ENSG00000162571.13' 'ENSG00000162571.13' 'ENSG00000162571.13' 'ENSG00000162571.13' 'ENSG00000162571.13']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1281610. 1282010. 1282319. 1284090. 1285664. 1286278. 1286975. 1287299. 1287836. 1288037. 1290388. 1290555. 1290694. 1290953. 1291140. 1292029.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000162572.20' 'ENSG00000162572.20' 'ENSG00000162572.20' 'ENSG00000162572.20' 'ENSG00000162572.20' 'ENSG00000162572.20' 'ENSG00000162572.20' 'ENSG00000162572.20' 'ENSG00000162572.20' 'ENSG00000162572.20' 'ENSG00000162572.20' 'ENSG00000162572.20' 'ENSG00000162572.20' 'ENSG00000162572.20' 'ENSG00000162572.20']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1353946. 1354106. 1354509. 1355752. 1356704. 1358794. 1361777.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000162576.16' 'ENSG00000162576.16' 'ENSG00000162576.16' 'ENSG00000162576.16' 'ENSG00000162576.16' 'ENSG00000162576.16']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1331536. 1331938. 1332806. 1333124. 1333379. 1335306.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000169962.4' 'ENSG00000169962.4' 'ENSG00000169962.4' 'ENSG00000169962.4' 'ENSG00000169962.4']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1308720. 1308972. 1309851. 1311071. 1311677.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000169972.11' 'ENSG00000169972.11' 'ENSG00000169972.11' 'ENSG00000169972.11']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1373902. 1375495.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000175756.13']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1235041.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 818202. 819837.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000177757.2']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1435146. 1435821. 1437484. 1442882.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000179403.11' 'ENSG00000179403.11' 'ENSG00000179403.11']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1242646. 1243552. 1244275. 1244724. 1246722.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000184163.3' 'ENSG00000184163.3' 'ENSG00000184163.3' 'ENSG00000184163.3']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 65433. 65573. 71585.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000186092.6' 'ENSG00000186092.6']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1211832. 1212138. 1212704. 1213785. 1214138.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000186827.10' 'ENSG00000186827.10' 'ENSG00000186827.10' 'ENSG00000186827.10']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1203968. 1204236. 1204486. 1205680. 1206691.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000186891.13' 'ENSG00000186891.13' 'ENSG00000186891.13' 'ENSG00000186891.13']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 966614. 966803. 970423. 970601. 971006. 971208. 971523. 972150. 972424. 973010. 973326. 973640. 974051. 974364. 975108. 975865.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000187583.10' 'ENSG00000187583.10' 'ENSG00000187583.10' 'ENSG00000187583.10' 'ENSG00000187583.10' 'ENSG00000187583.10' 'ENSG00000187583.10' 'ENSG00000187583.10' 'ENSG00000187583.10' 'ENSG00000187583.10' 'ENSG00000187583.10' 'ENSG00000187583.10' 'ENSG00000187583.10' 'ENSG00000187583.10' 'ENSG00000187583.10']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1001281. 1008279. 1013576. 1014540.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000187608.9' 'ENSG00000187608.9' 'ENSG00000187608.9']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 924948. 925189. 925800. 926013. 930336. 931089. 935896. 939129. 939460. 940462. 941306. 943058. 943377. 944581.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000187634.11' 'ENSG00000187634.11' 'ENSG00000187634.11' 'ENSG00000187634.11' 'ENSG00000187634.11' 'ENSG00000187634.11' 'ENSG00000187634.11' 'ENSG00000187634.11' 'ENSG00000187634.11' 'ENSG00000187634.11' 'ENSG00000187634.11' 'ENSG00000187634.11' 'ENSG00000187634.11']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 976269. 976641. 981029. 981173. 982093.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000187642.9' 'ENSG00000187642.9' 'ENSG00000187642.9' 'ENSG00000187642.9']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 960800. 961750. 962478. 962917. 963253. 963504. 964008. 964180. 964530. 965715.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000187961.13' 'ENSG00000187961.13' 'ENSG00000187961.13' 'ENSG00000187961.13' 'ENSG00000187961.13' 'ENSG00000187961.13' 'ENSG00000187961.13' 'ENSG00000187961.13' 'ENSG00000187961.13']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1020373. 1022462. 1034703. 1035324. 1040880. 1041397. 1041702. 1042162. 1043457. 1043732. 1044023. 1044257. 1044439. 1045277. 1045523. 1045876. 1046088. 1046349. 1046735. 1046957. 1047454. 1047687. 1047895. 1048365. 1049059. 1049451. 1049795. 1050037. 1050329. 1050591. 1050837. 1051043. 1051369. 1051645. 1051815. 1053977. 1054551. 1056118.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 999432. 1000172.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000188290.10']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 944800. 945146. 945422. 945653. 946286. 947060. 948232. 948603. 951238. 952139. 952600. 953288. 953892. 954523. 956013. 956215. 957025. 959081. 959309.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000188976.10' 'ENSG00000188976.10' 'ENSG00000188976.10' 'ENSG00000188976.10' 'ENSG00000188976.10' 'ENSG00000188976.10' 'ENSG00000188976.10' 'ENSG00000188976.10' 'ENSG00000188976.10' 'ENSG00000188976.10' 'ENSG00000188976.10' 'ENSG00000188976.10' 'ENSG00000188976.10' 'ENSG00000188976.10' 'ENSG00000188976.10' 'ENSG00000188976.10' 'ENSG00000188976.10' 'ENSG00000188976.10']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1512473. 1516088. 1517412. 1517775. 1518990. 1520306. 1520617.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000197785.13' 'ENSG00000197785.13' 'ENSG00000197785.13' 'ENSG00000197785.13' 'ENSG00000197785.13' 'ENSG00000197785.13' 'ENSG00000197785.13']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 634922.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1169087.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1426385. 1427787.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000205116.3']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1176396. 1179555.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000205231.1']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1167952.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1167198.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1450758. 1452122. 1452434. 1454500. 1455519. 1455916. 1456349. 1457180. 1459231. 1460917. 1462708. 1470158.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000215915.9' 'ENSG00000215915.9' 'ENSG00000215915.9' 'ENSG00000215915.9' 'ENSG00000215915.9' 'ENSG00000215915.9' 'ENSG00000215915.9' 'ENSG00000215915.9' 'ENSG00000215915.9' 'ENSG00000215915.9' 'ENSG00000215915.9']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1059846. 1060393. 1061117. 1063201. 1063566. 1064401. 1064589. 1065475. 1066456. 1066667. 1067646. 1068003. 1068724. 1069355.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000217801.9' 'ENSG00000217801.9' 'ENSG00000217801.9' 'ENSG00000217801.9' 'ENSG00000217801.9' 'ENSG00000217801.9' 'ENSG00000217801.9' 'ENSG00000217801.9' 'ENSG00000217801.9' 'ENSG00000217801.9' 'ENSG00000217801.9' 'ENSG00000217801.9' 'ENSG00000217801.9']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1387582. 1387869. 1388743. 1388830. 1389047. 1389473. 1390371. 1390563. 1392803. 1393460. 1395537. 1398366. 1398956. 1399328.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000221978.11' 'ENSG00000221978.11' 'ENSG00000221978.11' 'ENSG00000221978.11' 'ENSG00000221978.11' 'ENSG00000221978.11' 'ENSG00000221978.11' 'ENSG00000221978.11' 'ENSG00000221978.11' 'ENSG00000221978.11' 'ENSG00000221978.11' 'ENSG00000221978.11' 'ENSG00000221978.11']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 157887.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 758336.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1379032.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 921016.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1137110. 1141032. 1144056.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000223823.1' 'ENSG00000223823.1']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 12227. 12721. 13052. 14409.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000223972.5' 'ENSG00000223972.5' 'ENSG00000223972.5']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1325102. 1325595. 1327032. 1328897.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000224051.6' 'ENSG00000224051.6' 'ENSG00000224051.6']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1402046.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1012190. 1013193.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000224969.1']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1430954. 1431843. 1434573.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000225285.1' 'ENSG00000225285.1']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 630683.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 827522.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1420564. 1422691.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000225905.1']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 629433.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 14501. 15038. 15947. 16765. 17055. 17368. 17742. 18061. 18366. 24891. 29570.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000227232.5' 'ENSG00000227232.5' 'ENSG00000227232.5' 'ENSG00000227232.5' 'ENSG00000227232.5' 'ENSG00000227232.5' 'ENSG00000227232.5' 'ENSG00000227232.5' 'ENSG00000227232.5' 'ENSG00000227232.5']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 729804. 733364. 735613. 743350. 744391. 744825. 746818. 756141. 759123. 765247. 766387. 768613. 769712. 773107. 774280. 778626.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000228327.3' 'ENSG00000228327.3' 'ENSG00000228327.3' 'ENSG00000228327.3' 'ENSG00000228327.3' 'ENSG00000228327.3' 'ENSG00000228327.3' 'ENSG00000228327.3' 'ENSG00000228327.3' 'ENSG00000228327.3' 'ENSG00000228327.3' 'ENSG00000228327.3' 'ENSG00000228327.3' 'ENSG00000228327.3' 'ENSG00000228327.3']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 259025. 261634. 268204. 268816. 289370. 297502. 357586. 358183. 359681.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000228463.10' 'ENSG00000228463.10' 'ENSG00000228463.10' 'ENSG00000228463.10' 'ENSG00000228463.10' 'ENSG00000228463.10' 'ENSG00000228463.10' 'ENSG00000228463.10']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 825552. 826923. 827775. 827853. 829104. 831677. 842020. 847806. 849602. 850351. 852515. 852766. 859446.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000228794.8' 'ENSG00000228794.8' 'ENSG00000228794.8' 'ENSG00000228794.8' 'ENSG00000228794.8' 'ENSG00000228794.8' 'ENSG00000228794.8' 'ENSG00000228794.8' 'ENSG00000228794.8' 'ENSG00000228794.8' 'ENSG00000228794.8' 'ENSG00000228794.8']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 633438.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 724360. 724903.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000229376.3']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 761154. 761989.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000229905.1']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 586358. 586955. 588453. 594756. 598551. 601577. 608056. 612864. 627823. 628223. 629006. 631204. 633129. 698959. 702340. 703789. 711922. 720206. 724564. 732212. 733064. 827796.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000230021.10' 'ENSG00000230021.10' 'ENSG00000230021.10' 'ENSG00000230021.10' 'ENSG00000230021.10' 'ENSG00000230021.10' 'ENSG00000230021.10' 'ENSG00000230021.10' 'ENSG00000230021.10' 'ENSG00000230021.10' 'ENSG00000230021.10' 'ENSG00000230021.10' 'ENSG00000230021.10' 'ENSG00000230021.10' 'ENSG00000230021.10' 'ENSG00000230021.10' 'ENSG00000230021.10' 'ENSG00000230021.10' 'ENSG00000230021.10' 'ENSG00000230021.10' 'ENSG00000230021.10']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 801163. 805891. 808623. 810170. 817712.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000230092.7' 'ENSG00000230092.7' 'ENSG00000230092.7' 'ENSG00000230092.7']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 868675. 869575. 870201. 875155. 876903.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000230368.2' 'ENSG00000230368.2' 'ENSG00000230368.2' 'ENSG00000230368.2']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1275299. 1279393. 1280420.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000230415.1' 'ENSG00000230415.1']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 911473. 914948.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000230699.2']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1008229.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 489387. 489906.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000233653.3']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 134836.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 874349.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1419549. 1420592. 1421769.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000235098.8' 'ENSG00000235098.8']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 587729. 594768.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000235146.2']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 358957. 360168. 366052.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000236601.2' 'ENSG00000236601.2']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 348366.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 365692. 366151. 368450. 373323. 379972. 476945. 485208. 489553. 494898. 495049. 495476. 496605. 497299. 498305. 499369. 501620. 502243. 502955. 505103. 514423. 517266. 522928.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000237094.12' 'ENSG00000237094.12' 'ENSG00000237094.12' 'ENSG00000237094.12' 'ENSG00000237094.12' 'ENSG00000237094.12' 'ENSG00000237094.12' 'ENSG00000237094.12' 'ENSG00000237094.12' 'ENSG00000237094.12' 'ENSG00000237094.12' 'ENSG00000237094.12' 'ENSG00000237094.12' 'ENSG00000237094.12' 'ENSG00000237094.12' 'ENSG00000237094.12' 'ENSG00000237094.12' 'ENSG00000237094.12' 'ENSG00000237094.12' 'ENSG00000237094.12' 'ENSG00000237094.12']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1072575. 1074307.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000237330.2']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 779092. 782191. 783363. 784977. 787672. 793041. 795582. 801876. 803667. 804222. 805270. 806459. 807465. 810060.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000237491.8' 'ENSG00000237491.8' 'ENSG00000237491.8' 'ENSG00000237491.8' 'ENSG00000237491.8' 'ENSG00000237491.8' 'ENSG00000237491.8' 'ENSG00000237491.8' 'ENSG00000237491.8' 'ENSG00000237491.8' 'ENSG00000237491.8' 'ENSG00000237491.8' 'ENSG00000237491.8']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 35174. 35481. 36081.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000237613.2' 'ENSG00000237613.2']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 632616.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 91629. 92240. 111357. 112804. 120932. 129223. 133723.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000238009.6' 'ENSG00000238009.6' 'ENSG00000238009.6' 'ENSG00000238009.6' 'ENSG00000238009.6' 'ENSG00000238009.6']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 139847. 140339.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000239906.1']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 90050. 91105.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000239945.1']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 57653. 58856. 64116.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000240361.2' 'ENSG00000240361.2']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 633741.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1317899. 1318689.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000240731.1']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 914444. 914971.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000241180.1']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 160690. 161525.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000241599.1']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 143011. 149707. 155831. 164791. 165942. 168165. 168767. 169264. 172688. 173862.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000241860.6' 'ENSG00000241860.6' 'ENSG00000241860.6' 'ENSG00000241860.6' 'ENSG00000241860.6' 'ENSG00000241860.6' 'ENSG00000241860.6' 'ENSG00000241860.6' 'ENSG00000241860.6']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1402601. 1407019. 1407313.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000242485.5' 'ENSG00000242485.5']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1055215. 1056116.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000242590.1']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 30039. 30667. 31109.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000243485.5' 'ENSG00000243485.5']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 634376.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 491989. 493241.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000250575.1']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1251334.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1405752.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 53312.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 675265.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 135895.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 440232.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 137965.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1170343.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 904957. 915976.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000272438.1']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1410618.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 998051.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1062808. 1063288.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000273443.1']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 187958.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1296170.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 17436.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 516479.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 632413.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 185350. 185559. 186469. 187287. 187577. 187890. 188266. 188584. 188902. 195411.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000279457.4' 'ENSG00000279457.4' 'ENSG00000279457.4' 'ENSG00000279457.4' 'ENSG00000279457.4' 'ENSG00000279457.4' 'ENSG00000279457.4' 'ENSG00000279457.4' 'ENSG00000279457.4']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 182746. 183216. 183571. 183901. 184174.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000279928.2' 'ENSG00000279928.2' 'ENSG00000279928.2' 'ENSG00000279928.2']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 874591. 875155. 875625. 876611. 877234.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000283040.1' 'ENSG00000283040.1' 'ENSG00000283040.1' 'ENSG00000283040.1']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1312566.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 30503.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1339708.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 686673.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 451697.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1503661. 1509452.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000284740.1']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 782050.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1098113. 1104598.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000285812.1']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_unary.py: 2000 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_unary.py:153: FutureWarning: A value is trying to be set on a copy of a DataFrame or Series through chained assignment using an inplace method. The behavior will change in pandas 3.0. This inplace method will never work because the intermediate object on which we are setting values always behaves as a copy. For example, when doing 'df[col].method(value, inplace=True)', try using 'df.method({col: value}, inplace=True)' or df[col] = df[col].method(value) instead, to perform the operation inplace on the original object. result_df.Cluster.replace(cluster_ids, inplace=True) .pybuild/cpython3_3.12_pyranges/build/tests/test_unary.py: 2000 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_unary.py:178: FutureWarning: The default of observed=False is deprecated and will be changed to True in a future version of pandas. Pass observed=False to retain current behavior or observed=True to adopt the future default and silence this warning. for _, gdf in natsorted(df.groupby(groupby)): -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html =============== 531 passed, 412060 warnings in 754.08s (0:12:34) =============== create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/python3-pyranges/ -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3.13 setup.py install --root /build/reproducible-path/pyranges-0.0.111+ds/debian/python3-pyranges /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() /usr/lib/python3.13/dist-packages/tests/conftest.py:83: SyntaxWarning: invalid escape sequence '\s' I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/pyranges-0.0.111+ds/debian/python3-pyranges /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() /usr/lib/python3.12/dist-packages/tests/conftest.py:83: SyntaxWarning: invalid escape sequence '\s' debian/rules execute_after_dh_install make[1]: Entering directory '/build/reproducible-path/pyranges-0.0.111+ds' find debian/ -name *.bam* | xargs rm -rf find debian/ -name 'hi' | xargs rm -rf find debian/ -name '.hypothesis' | xargs rm -rf make[1]: Leaving directory '/build/reproducible-path/pyranges-0.0.111+ds' dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-pyranges' in '../python3-pyranges_0.0.111+ds-8_all.deb'. dpkg-genbuildinfo --build=binary -O../pyranges_0.0.111+ds-8_amd64.buildinfo dpkg-genchanges --build=binary -O../pyranges_0.0.111+ds-8_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-source: info: using options from pyranges-0.0.111+ds/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2206354 and its subdirectories I: Current time: Tue Feb 24 03:45:27 -12 2026 I: pbuilder-time-stamp: 1771947927 Wed Jan 22 09:22:29 UTC 2025 I: 1st build successful. Starting 2nd build on remote node ionos1-amd64.debian.net. Wed Jan 22 09:22:29 UTC 2025 I: Preparing to do remote build '2' on ionos1-amd64.debian.net. Wed Jan 22 09:22:29 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos1-amd64.debian.net is marked as down. Wed Jan 22 09:22:29 UTC 2025 - checking via ssh if ionos1-amd64.debian.net is up. removed '/tmp/read-only-fs-test-KRcPaC' ==================================================================================== Wed Jan 22 09:22:30 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos1-amd64, called using "2 pyranges trixie /srv/reproducible-results/rbuild-debian/r-b-build.1OvWq7Kz 0.0.111+ds-8" as arguments. Wed Jan 22 09:22:30 UTC 2025 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-Nq83i6hW" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Wed Jan 22 09:22:30 UTC 2025 I: Downloading source for trixie/pyranges=0.0.111+ds-8 Reading package lists... NOTICE: 'pyranges' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/pyranges.git Please use: git clone https://salsa.debian.org/med-team/pyranges.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 3374 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main pyranges 0.0.111+ds-8 (dsc) [2428 B] Get:2 http://deb.debian.org/debian trixie/main pyranges 0.0.111+ds-8 (tar) [3288 kB] Get:3 http://deb.debian.org/debian trixie/main pyranges 0.0.111+ds-8 (diff) [83.5 kB] Fetched 3374 kB in 0s (29.2 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'pyranges' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/pyranges.git Please use: git clone https://salsa.debian.org/med-team/pyranges.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 3374 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main pyranges 0.0.111+ds-8 (dsc) [2428 B] Get:2 http://deb.debian.org/debian trixie/main pyranges 0.0.111+ds-8 (tar) [3288 kB] Get:3 http://deb.debian.org/debian trixie/main pyranges 0.0.111+ds-8 (diff) [83.5 kB] Fetched 3374 kB in 0s (29.2 MB/s) Download complete and in download only mode ============================================================================= Re-Building pyranges in trixie on amd64 on ionos1-amd64 now. Date: Wed Jan 22 09:22:31 UTC 2025 Date UTC: Wed Jan 22 09:22:31 UTC 2025 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.1OvWq7Kz + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.1OvWq7Kz/pbuilderrc_xqUY + case ${ARCH} in + case $ARCH in + locale=et_EE + language=et + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' pyranges = debian-installer -o pyranges = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' pyranges = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.1OvWq7Kz/pbuilderrc_xqUY --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.1OvWq7Kz/b2 --logfile b2/build.log pyranges_0.0.111+ds-8.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Wed Jan 22 23:22:31 +14 2025 I: pbuilder-time-stamp: 1737537751 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [pyranges_0.0.111+ds-8.dsc] I: copying [./pyranges_0.0.111+ds.orig.tar.xz] I: copying [./pyranges_0.0.111+ds-8.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./pyranges_0.0.111+ds-8.dsc: unsupported subcommand dpkg-source: info: extracting pyranges in pyranges-0.0.111+ds dpkg-source: info: unpacking pyranges_0.0.111+ds.orig.tar.xz dpkg-source: info: unpacking pyranges_0.0.111+ds-8.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix_dtype.patch dpkg-source: info: applying reorder.patch dpkg-source: info: applying numpy_1.24.patch dpkg-source: info: applying healthcheck-all.patch dpkg-source: info: applying no_install_depends_cython.patch dpkg-source: info: applying pandas2.0.patch dpkg-source: info: applying fix-test_unary.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3459097/tmp/hooks/D01_modify_environment starting debug: Running on ionos1-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Jan 22 09:22 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/3459097/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/3459097/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.2.37(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' DIRSTACK=() DISTRIBUTION=trixie EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=77f35d32c14a427c8d8c0784f5330fe2 LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=3459097 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.1OvWq7Kz/pbuilderrc_xqUY --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.1OvWq7Kz/b2 --logfile b2/build.log pyranges_0.0.111+ds-8.dsc' SUDO_GID=110 SUDO_UID=105 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://46.16.76.132:3128 I: uname -a Linux i-capture-the-hostname 6.1.0-30-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.124-1 (2025-01-12) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3459097/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, python3-setuptools, python3-all, python3-ncls, python3-pyrle, python3-pytest, python3-pytest-xdist, python3-sorted-nearest, python3-hypothesis, bedtools, samtools dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19856 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-ncls; however: Package python3-ncls is not installed. pbuilder-satisfydepends-dummy depends on python3-pyrle; however: Package python3-pyrle is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest-xdist; however: Package python3-pytest-xdist is not installed. pbuilder-satisfydepends-dummy depends on python3-sorted-nearest; however: Package python3-sorted-nearest is not installed. pbuilder-satisfydepends-dummy depends on python3-hypothesis; however: Package python3-hypothesis is not installed. pbuilder-satisfydepends-dummy depends on bedtools; however: Package bedtools is not installed. pbuilder-satisfydepends-dummy depends on samtools; however: Package samtools is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bedtools{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libcom-err2{a} libcurl3t64-gnutls{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libgnutls30t64{a} libgssapi-krb5-2{a} libhts3t64{a} libhtscodecs2{a} libicu72{a} libidn2-0{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} libldap2{a} libmagic-mgc{a} libmagic1t64{a} libncurses6{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libnsl2{a} libp11-kit0{a} libpipeline1{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libtasn1-6{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-all{a} python3-attr{a} python3-autocommand{a} python3-dateutil{a} python3-execnet{a} python3-hypothesis{a} python3-inflect{a} python3-iniconfig{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-natsort{a} python3-ncls{a} python3-numpy{a} python3-packaging{a} python3-pandas{a} python3-pandas-lib{a} python3-pkg-resources{a} python3-pluggy{a} python3-pyrle{a} python3-pytest{a} python3-pytest-xdist{a} python3-setuptools{a} python3-sorted-nearest{a} python3-sortedcontainers{a} python3-tabulate{a} python3-typeguard{a} python3-typing-extensions{a} python3-tz{a} python3-zipp{a} python3.12{a} python3.12-minimal{a} python3.13{a} python3.13-minimal{a} readline-common{a} samtools{a} sensible-utils{a} tzdata{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libgpm2 libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx publicsuffix python3-bottleneck python3-bs4 python3-click python3-html5lib python3-jinja2 python3-lxml python3-matplotlib python3-numexpr python3-odf python3-openpyxl python3-pygments python3-scipy python3-tables wget 0 packages upgraded, 114 newly installed, 0 to remove and 0 not upgraded. Need to get 61.3 MB of archives. After unpacking 292 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 libpython3.12-minimal amd64 3.12.8-5 [817 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.6.4-1 [106 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 python3.12-minimal amd64 3.12.8-5 [2164 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 python3-minimal amd64 3.12.8-1 [26.9 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 tzdata all 2024b-6 [257 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 libffi8 amd64 3.4.6-1 [23.6 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 libkrb5support0 amd64 1.21.3-3 [32.5 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 libcom-err2 amd64 1.47.2-1 [24.0 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 libk5crypto3 amd64 1.21.3-3 [79.9 kB] Get: 12 http://deb.debian.org/debian trixie/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get: 13 http://deb.debian.org/debian trixie/main amd64 libkrb5-3 amd64 1.21.3-3 [324 kB] Get: 14 http://deb.debian.org/debian trixie/main amd64 libgssapi-krb5-2 amd64 1.21.3-3 [136 kB] Get: 15 http://deb.debian.org/debian trixie/main amd64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.3+b1 [83.1 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 libnsl2 amd64 1.3.0-3+b3 [40.6 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 readline-common all 8.2-6 [69.4 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 libreadline8t64 amd64 8.2-6 [169 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 libpython3.12-stdlib amd64 3.12.8-5 [1971 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 python3.12 amd64 3.12.8-5 [677 kB] Get: 22 http://deb.debian.org/debian trixie/main amd64 libpython3-stdlib amd64 3.12.8-1 [9788 B] Get: 23 http://deb.debian.org/debian trixie/main amd64 python3 amd64 3.12.8-1 [27.9 kB] Get: 24 http://deb.debian.org/debian trixie/main amd64 libpython3.13-minimal amd64 3.13.1-3 [858 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 python3.13-minimal amd64 3.13.1-3 [2202 kB] Get: 26 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 27 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get: 28 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get: 30 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.22.5-4 [200 kB] Get: 31 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 32 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-7 [1185 kB] Get: 33 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.40.4-1 [92.2 kB] Get: 34 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 35 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 36 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-5 [294 kB] Get: 37 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.72-3 [493 kB] Get: 38 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 39 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 40 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.22.5-4 [723 kB] Get: 41 http://deb.debian.org/debian trixie/main amd64 bedtools amd64 2.31.1+dfsg-2 [678 kB] Get: 42 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.23 [90.6 kB] Get: 43 http://deb.debian.org/debian trixie/main amd64 libtool all 2.5.4-2 [539 kB] Get: 44 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 45 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 46 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 47 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 48 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 49 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 50 http://deb.debian.org/debian trixie/main amd64 libunistring5 amd64 1.3-1 [476 kB] Get: 51 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-6 [9421 kB] Get: 52 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB] Get: 53 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.22.5-4 [1600 kB] Get: 54 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 55 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 56 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.23 [919 kB] Get: 57 http://deb.debian.org/debian trixie/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 58 http://deb.debian.org/debian trixie/main amd64 python3-more-itertools all 10.6.0-1 [65.3 kB] Get: 59 http://deb.debian.org/debian trixie/main amd64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 60 http://deb.debian.org/debian trixie/main amd64 python3-typeguard all 4.4.1-1 [37.0 kB] Get: 61 http://deb.debian.org/debian trixie/main amd64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 62 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 63 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 64 http://deb.debian.org/debian trixie/main amd64 python3-pkg-resources all 75.6.0-1 [222 kB] Get: 65 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 66 http://deb.debian.org/debian trixie/main amd64 python3-zipp all 3.21.0-1 [10.6 kB] Get: 67 http://deb.debian.org/debian trixie/main amd64 python3-setuptools all 75.6.0-1 [720 kB] Get: 68 http://deb.debian.org/debian trixie/main amd64 dh-python all 6.20250108 [113 kB] Get: 69 http://deb.debian.org/debian trixie/main amd64 libblas3 amd64 3.12.0-4 [152 kB] Get: 70 http://deb.debian.org/debian trixie/main amd64 libbrotli1 amd64 1.1.0-2+b6 [302 kB] Get: 71 http://deb.debian.org/debian trixie/main amd64 libidn2-0 amd64 2.3.7-2+b1 [129 kB] Get: 72 http://deb.debian.org/debian trixie/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB] Get: 73 http://deb.debian.org/debian trixie/main amd64 libtasn1-6 amd64 4.19.0-3+b3 [49.5 kB] Get: 74 http://deb.debian.org/debian trixie/main amd64 libgnutls30t64 amd64 3.8.8-2 [1454 kB] Get: 75 http://deb.debian.org/debian trixie/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-8+b1 [19.9 kB] Get: 76 http://deb.debian.org/debian trixie/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-8+b1 [57.6 kB] Get: 77 http://deb.debian.org/debian trixie/main amd64 libldap2 amd64 2.6.9+dfsg-1 [192 kB] Get: 78 http://deb.debian.org/debian trixie/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB] Get: 79 http://deb.debian.org/debian trixie/main amd64 libnghttp3-9 amd64 1.6.0-2 [64.8 kB] Get: 80 http://deb.debian.org/debian trixie/main amd64 libngtcp2-16 amd64 1.9.1-1 [119 kB] Get: 81 http://deb.debian.org/debian trixie/main amd64 libngtcp2-crypto-gnutls8 amd64 1.9.1-1 [18.5 kB] Get: 82 http://deb.debian.org/debian trixie/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 83 http://deb.debian.org/debian trixie/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get: 84 http://deb.debian.org/debian trixie/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 85 http://deb.debian.org/debian trixie/main amd64 libcurl3t64-gnutls amd64 8.11.1-1+b1 [360 kB] Get: 86 http://deb.debian.org/debian trixie/main amd64 libdeflate0 amd64 1.23-1+b1 [47.5 kB] Get: 87 http://deb.debian.org/debian trixie/main amd64 libgfortran5 amd64 14.2.0-12 [836 kB] Get: 88 http://deb.debian.org/debian trixie/main amd64 libhtscodecs2 amd64 1.6.1-1 [95.6 kB] Get: 89 http://deb.debian.org/debian trixie/main amd64 libhts3t64 amd64 1.20+ds-2 [455 kB] Get: 90 http://deb.debian.org/debian trixie/main amd64 liblapack3 amd64 3.12.0-4 [2450 kB] Get: 91 http://deb.debian.org/debian trixie/main amd64 libncurses6 amd64 6.5-2+b1 [105 kB] Get: 92 http://deb.debian.org/debian trixie/main amd64 libpython3.13-stdlib amd64 3.13.1-3 [1973 kB] Get: 93 http://deb.debian.org/debian trixie/main amd64 python3.13 amd64 3.13.1-3 [740 kB] Get: 94 http://deb.debian.org/debian trixie/main amd64 python3-all amd64 3.12.8-1 [1048 B] Get: 95 http://deb.debian.org/debian trixie/main amd64 python3-attr all 24.3.0-1 [68.8 kB] Get: 96 http://deb.debian.org/debian trixie/main amd64 python3-dateutil all 2.9.0-3 [79.3 kB] Get: 97 http://deb.debian.org/debian trixie/main amd64 python3-execnet all 2.1.1-1 [40.2 kB] Get: 98 http://deb.debian.org/debian trixie/main amd64 python3-sortedcontainers all 2.4.0-2 [31.9 kB] Get: 99 http://deb.debian.org/debian trixie/main amd64 python3-hypothesis all 6.122.1-1 [326 kB] Get: 100 http://deb.debian.org/debian trixie/main amd64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 101 http://deb.debian.org/debian trixie/main amd64 python3-natsort all 8.0.2-2 [39.0 kB] Get: 102 http://deb.debian.org/debian trixie/main amd64 python3-numpy amd64 1:1.26.4+ds-12 [4738 kB] Get: 103 http://deb.debian.org/debian trixie/main amd64 python3-ncls amd64 0.0.63-hotfix+ds-1+b6 [479 kB] Get: 104 http://deb.debian.org/debian trixie/main amd64 python3-packaging all 24.2-1 [55.3 kB] Get: 105 http://deb.debian.org/debian trixie/main amd64 python3-tz all 2024.2-1 [31.0 kB] Get: 106 http://deb.debian.org/debian trixie/main amd64 python3-pandas-lib amd64 2.2.3+dfsg-5+b1 [7307 kB] Get: 107 http://deb.debian.org/debian trixie/main amd64 python3-pandas all 2.2.3+dfsg-5 [3096 kB] Get: 108 http://deb.debian.org/debian trixie/main amd64 python3-pluggy all 1.5.0-1 [26.9 kB] Get: 109 http://deb.debian.org/debian trixie/main amd64 python3-tabulate all 0.9.0-1 [45.9 kB] Get: 110 http://deb.debian.org/debian trixie/main amd64 python3-pyrle amd64 0.0.33-4.1+b2 [372 kB] Get: 111 http://deb.debian.org/debian trixie/main amd64 python3-pytest all 8.3.4-1 [250 kB] Get: 112 http://deb.debian.org/debian trixie/main amd64 python3-pytest-xdist all 3.6.1-1 [44.4 kB] Get: 113 http://deb.debian.org/debian trixie/main amd64 python3-sorted-nearest amd64 0.0.39+dfsg-3 [603 kB] Get: 114 http://deb.debian.org/debian trixie/main amd64 samtools amd64 1.20-3 [653 kB] Fetched 61.3 MB in 6s (9732 kB/s) Preconfiguring packages ... Selecting previously unselected package libpython3.12-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19856 files and directories currently installed.) Preparing to unpack .../libpython3.12-minimal_3.12.8-5_amd64.deb ... Unpacking libpython3.12-minimal:amd64 (3.12.8-5) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.6.4-1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.4-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../python3.12-minimal_3.12.8-5_amd64.deb ... Unpacking python3.12-minimal (3.12.8-5) ... Setting up libpython3.12-minimal:amd64 (3.12.8-5) ... Setting up libexpat1:amd64 (2.6.4-1) ... Setting up python3.12-minimal (3.12.8-5) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20176 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.12.8-1_amd64.deb ... Unpacking python3-minimal (3.12.8-1) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../03-tzdata_2024b-6_all.deb ... Unpacking tzdata (2024b-6) ... Selecting previously unselected package libffi8:amd64. Preparing to unpack .../04-libffi8_3.4.6-1_amd64.deb ... Unpacking libffi8:amd64 (3.4.6-1) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../05-libkrb5support0_1.21.3-3_amd64.deb ... Unpacking libkrb5support0:amd64 (1.21.3-3) ... Selecting previously unselected package libcom-err2:amd64. Preparing to unpack .../06-libcom-err2_1.47.2-1_amd64.deb ... Unpacking libcom-err2:amd64 (1.47.2-1) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../07-libk5crypto3_1.21.3-3_amd64.deb ... Unpacking libk5crypto3:amd64 (1.21.3-3) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../08-libkeyutils1_1.6.3-4_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.3-4) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../09-libkrb5-3_1.21.3-3_amd64.deb ... Unpacking libkrb5-3:amd64 (1.21.3-3) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../10-libgssapi-krb5-2_1.21.3-3_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.21.3-3) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../11-libtirpc-common_1.3.4+ds-1.3_all.deb ... Unpacking libtirpc-common (1.3.4+ds-1.3) ... Selecting previously unselected package libtirpc3t64:amd64. Preparing to unpack .../12-libtirpc3t64_1.3.4+ds-1.3+b1_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ... Selecting previously unselected package libnsl2:amd64. Preparing to unpack .../13-libnsl2_1.3.0-3+b3_amd64.deb ... Unpacking libnsl2:amd64 (1.3.0-3+b3) ... Selecting previously unselected package readline-common. Preparing to unpack .../14-readline-common_8.2-6_all.deb ... Unpacking readline-common (8.2-6) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../15-libreadline8t64_8.2-6_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-6) ... Selecting previously unselected package libpython3.12-stdlib:amd64. Preparing to unpack .../16-libpython3.12-stdlib_3.12.8-5_amd64.deb ... Unpacking libpython3.12-stdlib:amd64 (3.12.8-5) ... Selecting previously unselected package python3.12. Preparing to unpack .../17-python3.12_3.12.8-5_amd64.deb ... Unpacking python3.12 (3.12.8-5) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../18-libpython3-stdlib_3.12.8-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.12.8-1) ... Setting up python3-minimal (3.12.8-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21244 files and directories currently installed.) Preparing to unpack .../00-python3_3.12.8-1_amd64.deb ... Unpacking python3 (3.12.8-1) ... Selecting previously unselected package libpython3.13-minimal:amd64. Preparing to unpack .../01-libpython3.13-minimal_3.13.1-3_amd64.deb ... Unpacking libpython3.13-minimal:amd64 (3.13.1-3) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../02-python3.13-minimal_3.13.1-3_amd64.deb ... Unpacking python3.13-minimal (3.13.1-3) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../03-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../04-libmagic-mgc_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../05-libmagic1t64_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../06-file_1%3a5.45-3+b1_amd64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../07-gettext-base_0.22.5-4_amd64.deb ... Unpacking gettext-base (0.22.5-4) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../08-libuchardet0_0.0.8-1+b2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../09-groff-base_1.23.0-7_amd64.deb ... Unpacking groff-base (1.23.0-7) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../10-bsdextrautils_2.40.4-1_amd64.deb ... Unpacking bsdextrautils (2.40.4-1) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../11-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../12-man-db_2.13.0-1_amd64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../13-m4_1.4.19-5_amd64.deb ... Unpacking m4 (1.4.19-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../14-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../15-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../16-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../17-autopoint_0.22.5-4_all.deb ... Unpacking autopoint (0.22.5-4) ... Selecting previously unselected package bedtools. Preparing to unpack .../18-bedtools_2.31.1+dfsg-2_amd64.deb ... Unpacking bedtools (2.31.1+dfsg-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../19-libdebhelper-perl_13.23_all.deb ... Unpacking libdebhelper-perl (13.23) ... Selecting previously unselected package libtool. Preparing to unpack .../20-libtool_2.5.4-2_all.deb ... Unpacking libtool (2.5.4-2) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../21-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../22-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../23-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../24-dh-strip-nondeterminism_1.14.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.0-1) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../25-libelf1t64_0.192-4_amd64.deb ... Unpacking libelf1t64:amd64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../26-dwz_0.15-1+b1_amd64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libunistring5:amd64. Preparing to unpack .../27-libunistring5_1.3-1_amd64.deb ... Unpacking libunistring5:amd64 (1.3-1) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../28-libicu72_72.1-6_amd64.deb ... Unpacking libicu72:amd64 (72.1-6) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../29-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_amd64.deb ... Unpacking libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../30-gettext_0.22.5-4_amd64.deb ... Unpacking gettext (0.22.5-4) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../31-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../32-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../33-debhelper_13.23_all.deb ... Unpacking debhelper (13.23) ... Selecting previously unselected package python3-autocommand. Preparing to unpack .../34-python3-autocommand_2.2.2-3_all.deb ... Unpacking python3-autocommand (2.2.2-3) ... Selecting previously unselected package python3-more-itertools. Preparing to unpack .../35-python3-more-itertools_10.6.0-1_all.deb ... Unpacking python3-more-itertools (10.6.0-1) ... Selecting previously unselected package python3-typing-extensions. Preparing to unpack .../36-python3-typing-extensions_4.12.2-2_all.deb ... Unpacking python3-typing-extensions (4.12.2-2) ... Selecting previously unselected package python3-typeguard. Preparing to unpack .../37-python3-typeguard_4.4.1-1_all.deb ... Unpacking python3-typeguard (4.4.1-1) ... Selecting previously unselected package python3-inflect. Preparing to unpack .../38-python3-inflect_7.3.1-2_all.deb ... Unpacking python3-inflect (7.3.1-2) ... Selecting previously unselected package python3-jaraco.context. Preparing to unpack .../39-python3-jaraco.context_6.0.0-1_all.deb ... Unpacking python3-jaraco.context (6.0.0-1) ... Selecting previously unselected package python3-jaraco.functools. Preparing to unpack .../40-python3-jaraco.functools_4.1.0-1_all.deb ... Unpacking python3-jaraco.functools (4.1.0-1) ... Selecting previously unselected package python3-pkg-resources. Preparing to unpack .../41-python3-pkg-resources_75.6.0-1_all.deb ... Unpacking python3-pkg-resources (75.6.0-1) ... Selecting previously unselected package python3-jaraco.text. Preparing to unpack .../42-python3-jaraco.text_4.0.0-1_all.deb ... Unpacking python3-jaraco.text (4.0.0-1) ... Selecting previously unselected package python3-zipp. Preparing to unpack .../43-python3-zipp_3.21.0-1_all.deb ... Unpacking python3-zipp (3.21.0-1) ... Selecting previously unselected package python3-setuptools. Preparing to unpack .../44-python3-setuptools_75.6.0-1_all.deb ... Unpacking python3-setuptools (75.6.0-1) ... Selecting previously unselected package dh-python. Preparing to unpack .../45-dh-python_6.20250108_all.deb ... Unpacking dh-python (6.20250108) ... Selecting previously unselected package libblas3:amd64. Preparing to unpack .../46-libblas3_3.12.0-4_amd64.deb ... Unpacking libblas3:amd64 (3.12.0-4) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../47-libbrotli1_1.1.0-2+b6_amd64.deb ... Unpacking libbrotli1:amd64 (1.1.0-2+b6) ... Selecting previously unselected package libidn2-0:amd64. Preparing to unpack .../48-libidn2-0_2.3.7-2+b1_amd64.deb ... Unpacking libidn2-0:amd64 (2.3.7-2+b1) ... Selecting previously unselected package libp11-kit0:amd64. Preparing to unpack .../49-libp11-kit0_0.25.5-3_amd64.deb ... Unpacking libp11-kit0:amd64 (0.25.5-3) ... Selecting previously unselected package libtasn1-6:amd64. Preparing to unpack .../50-libtasn1-6_4.19.0-3+b3_amd64.deb ... Unpacking libtasn1-6:amd64 (4.19.0-3+b3) ... Selecting previously unselected package libgnutls30t64:amd64. Preparing to unpack .../51-libgnutls30t64_3.8.8-2_amd64.deb ... Unpacking libgnutls30t64:amd64 (3.8.8-2) ... Selecting previously unselected package libsasl2-modules-db:amd64. Preparing to unpack .../52-libsasl2-modules-db_2.1.28+dfsg1-8+b1_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.28+dfsg1-8+b1) ... Selecting previously unselected package libsasl2-2:amd64. Preparing to unpack .../53-libsasl2-2_2.1.28+dfsg1-8+b1_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.28+dfsg1-8+b1) ... Selecting previously unselected package libldap2:amd64. Preparing to unpack .../54-libldap2_2.6.9+dfsg-1_amd64.deb ... Unpacking libldap2:amd64 (2.6.9+dfsg-1) ... Selecting previously unselected package libnghttp2-14:amd64. Preparing to unpack .../55-libnghttp2-14_1.64.0-1_amd64.deb ... Unpacking libnghttp2-14:amd64 (1.64.0-1) ... Selecting previously unselected package libnghttp3-9:amd64. Preparing to unpack .../56-libnghttp3-9_1.6.0-2_amd64.deb ... Unpacking libnghttp3-9:amd64 (1.6.0-2) ... Selecting previously unselected package libngtcp2-16:amd64. Preparing to unpack .../57-libngtcp2-16_1.9.1-1_amd64.deb ... Unpacking libngtcp2-16:amd64 (1.9.1-1) ... Selecting previously unselected package libngtcp2-crypto-gnutls8:amd64. Preparing to unpack .../58-libngtcp2-crypto-gnutls8_1.9.1-1_amd64.deb ... Unpacking libngtcp2-crypto-gnutls8:amd64 (1.9.1-1) ... Selecting previously unselected package libpsl5t64:amd64. Preparing to unpack .../59-libpsl5t64_0.21.2-1.1+b1_amd64.deb ... Unpacking libpsl5t64:amd64 (0.21.2-1.1+b1) ... Selecting previously unselected package librtmp1:amd64. Preparing to unpack .../60-librtmp1_2.4+20151223.gitfa8646d.1-2+b5_amd64.deb ... Unpacking librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Selecting previously unselected package libssh2-1t64:amd64. Preparing to unpack .../61-libssh2-1t64_1.11.1-1_amd64.deb ... Unpacking libssh2-1t64:amd64 (1.11.1-1) ... Selecting previously unselected package libcurl3t64-gnutls:amd64. Preparing to unpack .../62-libcurl3t64-gnutls_8.11.1-1+b1_amd64.deb ... Unpacking libcurl3t64-gnutls:amd64 (8.11.1-1+b1) ... Selecting previously unselected package libdeflate0:amd64. Preparing to unpack .../63-libdeflate0_1.23-1+b1_amd64.deb ... Unpacking libdeflate0:amd64 (1.23-1+b1) ... Selecting previously unselected package libgfortran5:amd64. Preparing to unpack .../64-libgfortran5_14.2.0-12_amd64.deb ... Unpacking libgfortran5:amd64 (14.2.0-12) ... Selecting previously unselected package libhtscodecs2:amd64. Preparing to unpack .../65-libhtscodecs2_1.6.1-1_amd64.deb ... Unpacking libhtscodecs2:amd64 (1.6.1-1) ... Selecting previously unselected package libhts3t64:amd64. Preparing to unpack .../66-libhts3t64_1.20+ds-2_amd64.deb ... Unpacking libhts3t64:amd64 (1.20+ds-2) ... Selecting previously unselected package liblapack3:amd64. Preparing to unpack .../67-liblapack3_3.12.0-4_amd64.deb ... Unpacking liblapack3:amd64 (3.12.0-4) ... Selecting previously unselected package libncurses6:amd64. Preparing to unpack .../68-libncurses6_6.5-2+b1_amd64.deb ... Unpacking libncurses6:amd64 (6.5-2+b1) ... Selecting previously unselected package libpython3.13-stdlib:amd64. Preparing to unpack .../69-libpython3.13-stdlib_3.13.1-3_amd64.deb ... Unpacking libpython3.13-stdlib:amd64 (3.13.1-3) ... Selecting previously unselected package python3.13. Preparing to unpack .../70-python3.13_3.13.1-3_amd64.deb ... Unpacking python3.13 (3.13.1-3) ... Selecting previously unselected package python3-all. Preparing to unpack .../71-python3-all_3.12.8-1_amd64.deb ... Unpacking python3-all (3.12.8-1) ... Selecting previously unselected package python3-attr. Preparing to unpack .../72-python3-attr_24.3.0-1_all.deb ... Unpacking python3-attr (24.3.0-1) ... Selecting previously unselected package python3-dateutil. Preparing to unpack .../73-python3-dateutil_2.9.0-3_all.deb ... Unpacking python3-dateutil (2.9.0-3) ... Selecting previously unselected package python3-execnet. Preparing to unpack .../74-python3-execnet_2.1.1-1_all.deb ... Unpacking python3-execnet (2.1.1-1) ... Selecting previously unselected package python3-sortedcontainers. Preparing to unpack .../75-python3-sortedcontainers_2.4.0-2_all.deb ... Unpacking python3-sortedcontainers (2.4.0-2) ... Selecting previously unselected package python3-hypothesis. Preparing to unpack .../76-python3-hypothesis_6.122.1-1_all.deb ... Unpacking python3-hypothesis (6.122.1-1) ... Selecting previously unselected package python3-iniconfig. Preparing to unpack .../77-python3-iniconfig_1.1.1-2_all.deb ... Unpacking python3-iniconfig (1.1.1-2) ... Selecting previously unselected package python3-natsort. Preparing to unpack .../78-python3-natsort_8.0.2-2_all.deb ... Unpacking python3-natsort (8.0.2-2) ... Selecting previously unselected package python3-numpy. Preparing to unpack .../79-python3-numpy_1%3a1.26.4+ds-12_amd64.deb ... Unpacking python3-numpy (1:1.26.4+ds-12) ... Selecting previously unselected package python3-ncls. Preparing to unpack .../80-python3-ncls_0.0.63-hotfix+ds-1+b6_amd64.deb ... Unpacking python3-ncls (0.0.63-hotfix+ds-1+b6) ... Selecting previously unselected package python3-packaging. Preparing to unpack .../81-python3-packaging_24.2-1_all.deb ... Unpacking python3-packaging (24.2-1) ... Selecting previously unselected package python3-tz. Preparing to unpack .../82-python3-tz_2024.2-1_all.deb ... Unpacking python3-tz (2024.2-1) ... Selecting previously unselected package python3-pandas-lib:amd64. Preparing to unpack .../83-python3-pandas-lib_2.2.3+dfsg-5+b1_amd64.deb ... Unpacking python3-pandas-lib:amd64 (2.2.3+dfsg-5+b1) ... Selecting previously unselected package python3-pandas. Preparing to unpack .../84-python3-pandas_2.2.3+dfsg-5_all.deb ... Unpacking python3-pandas (2.2.3+dfsg-5) ... Selecting previously unselected package python3-pluggy. Preparing to unpack .../85-python3-pluggy_1.5.0-1_all.deb ... Unpacking python3-pluggy (1.5.0-1) ... Selecting previously unselected package python3-tabulate. Preparing to unpack .../86-python3-tabulate_0.9.0-1_all.deb ... Unpacking python3-tabulate (0.9.0-1) ... Selecting previously unselected package python3-pyrle. Preparing to unpack .../87-python3-pyrle_0.0.33-4.1+b2_amd64.deb ... Unpacking python3-pyrle (0.0.33-4.1+b2) ... Selecting previously unselected package python3-pytest. Preparing to unpack .../88-python3-pytest_8.3.4-1_all.deb ... Unpacking python3-pytest (8.3.4-1) ... Selecting previously unselected package python3-pytest-xdist. Preparing to unpack .../89-python3-pytest-xdist_3.6.1-1_all.deb ... Unpacking python3-pytest-xdist (3.6.1-1) ... Selecting previously unselected package python3-sorted-nearest. Preparing to unpack .../90-python3-sorted-nearest_0.0.39+dfsg-3_amd64.deb ... Unpacking python3-sorted-nearest (0.0.39+dfsg-3) ... Selecting previously unselected package samtools. Preparing to unpack .../91-samtools_1.20-3_amd64.deb ... Unpacking samtools (1.20-3) ... Setting up libhtscodecs2:amd64 (1.6.1-1) ... Setting up media-types (10.1.0) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up libkeyutils1:amd64 (1.6.3-4) ... Setting up libicu72:amd64 (72.1-6) ... Setting up bsdextrautils (2.40.4-1) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libtirpc-common (1.3.4+ds-1.3) ... Setting up libdebhelper-perl (13.23) ... Setting up libbrotli1:amd64 (1.1.0-2+b6) ... Setting up libmagic1t64:amd64 (1:5.45-3+b1) ... Setting up libnghttp2-14:amd64 (1.64.0-1) ... Setting up libdeflate0:amd64 (1.23-1+b1) ... Setting up gettext-base (0.22.5-4) ... Setting up m4 (1.4.19-5) ... Setting up libcom-err2:amd64 (1.47.2-1) ... Setting up file (1:5.45-3+b1) ... Setting up libelf1t64:amd64 (0.192-4) ... Setting up libkrb5support0:amd64 (1.21.3-3) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-8+b1) ... Setting up tzdata (2024b-6) ... Current default time zone: 'Etc/UTC' Local time is now: Wed Jan 22 09:24:23 UTC 2025. Universal Time is now: Wed Jan 22 09:24:23 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libpython3.13-minimal:amd64 (3.13.1-3) ... Setting up autotools-dev (20220109.1) ... Setting up libblas3:amd64 (3.12.0-4) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libncurses6:amd64 (6.5-2+b1) ... Setting up libunistring5:amd64 (1.3-1) ... Setting up autopoint (0.22.5-4) ... Setting up libk5crypto3:amd64 (1.21.3-3) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-8+b1) ... Setting up libgfortran5:amd64 (14.2.0-12) ... Setting up autoconf (2.72-3) ... Setting up libnghttp3-9:amd64 (1.6.0-2) ... Setting up libffi8:amd64 (3.4.6-1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:amd64 (0.0.8-1+b2) ... Setting up libtasn1-6:amd64 (4.19.0-3+b3) ... Setting up python3.13-minimal (3.13.1-3) ... Setting up netbase (6.4) ... Setting up libngtcp2-16:amd64 (1.9.1-1) ... Setting up libkrb5-3:amd64 (1.21.3-3) ... Setting up libssh2-1t64:amd64 (1.11.1-1) ... Setting up readline-common (8.2-6) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up bedtools (2.31.1+dfsg-2) ... Setting up libldap2:amd64 (2.6.9+dfsg-1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up liblapack3:amd64 (3.12.0-4) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up gettext (0.22.5-4) ... Setting up libtool (2.5.4-2) ... Setting up libidn2-0:amd64 (2.3.7-2+b1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libp11-kit0:amd64 (0.25.5-3) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-3) ... Setting up libreadline8t64:amd64 (8.2-6) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-7) ... Setting up libpython3.13-stdlib:amd64 (3.13.1-3) ... Setting up libgnutls30t64:amd64 (3.8.8-2) ... Setting up libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ... Setting up python3.13 (3.13.1-3) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpsl5t64:amd64 (0.21.2-1.1+b1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libnsl2:amd64 (1.3.0-3+b3) ... Setting up libngtcp2-crypto-gnutls8:amd64 (1.9.1-1) ... Setting up libpython3.12-stdlib:amd64 (3.12.8-5) ... Setting up python3.12 (3.12.8-5) ... Setting up libcurl3t64-gnutls:amd64 (8.11.1-1+b1) ... Setting up debhelper (13.23) ... Setting up libhts3t64:amd64 (1.20+ds-2) ... Setting up libpython3-stdlib:amd64 (3.12.8-1) ... Setting up python3 (3.12.8-1) ... Setting up python3-sortedcontainers (2.4.0-2) ... Setting up python3-zipp (3.21.0-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up python3-tz (2024.2-1) ... Setting up python3-natsort (8.0.2-2) ... Setting up samtools (1.20-3) ... Setting up python3-packaging (24.2-1) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up python3-pluggy (1.5.0-1) ... Setting up python3-dateutil (2.9.0-3) ... Setting up python3-execnet (2.1.1-1) ... Setting up python3-more-itertools (10.6.0-1) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up python3-attr (24.3.0-1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up python3-pytest (8.3.4-1) ... Setting up python3-hypothesis (6.122.1-1) ... Setting up python3-typeguard (4.4.1-1) ... Setting up python3-tabulate (0.9.0-1) ... Setting up python3-all (3.12.8-1) ... Setting up python3-inflect (7.3.1-2) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-pkg-resources (75.6.0-1) ... Setting up python3-setuptools (75.6.0-1) ... Setting up python3-pytest-xdist (3.6.1-1) ... Setting up python3-numpy (1:1.26.4+ds-12) ... Setting up python3-ncls (0.0.63-hotfix+ds-1+b6) ... Setting up dh-python (6.20250108) ... Setting up python3-pandas-lib:amd64 (2.2.3+dfsg-5+b1) ... Setting up python3-sorted-nearest (0.0.39+dfsg-3) ... Setting up python3-pandas (2.2.3+dfsg-5) ... Setting up python3-pyrle (0.0.33-4.1+b2) ... Processing triggers for libc-bin (2.40-5) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/3459097/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for trixie I: user script /srv/workspace/pbuilder/3459097/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/pyranges-0.0.111+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../pyranges_0.0.111+ds-8_source.changes dpkg-buildpackage: info: source package pyranges dpkg-buildpackage: info: source version 0.0.111+ds-8 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 dpkg-source: info: using options from pyranges-0.0.111+ds/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ debian/rules clean dh clean --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py clean 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.13' does not exist -- can't clean it I: pybuild base:311: python3.12 setup.py clean 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.12' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py config I: pybuild base:311: python3.12 setup.py config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3.13 setup.py build I: pybuild base:311: /usr/bin/python3 setup.py build debian/rules execute_after_dh_auto_build make[1]: Entering directory '/build/reproducible-path/pyranges-0.0.111+ds' echo 'Generating corresponding files ...' Generating corresponding files ... cat debian/missing-sources/test_sorted.sam| samtools view -Sb - > tests/test_data/test_sorted.bam cat debian/missing-sources/control.sam| samtools view -Sb - > pyranges/example_data/control.bam samtools index tests/test_data/test_sorted.bam tests/test_data/test_sorted.bam.bai samtools index pyranges/example_data/control.bam pyranges/example_data/control.bam.bai make[1]: Leaving directory '/build/reproducible-path/pyranges-0.0.111+ds' dh_auto_test -O--buildsystem=pybuild I: pybuild pybuild:308: mkdir -pv /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges && cp -av /build/reproducible-path/pyranges-0.0.111+ds/tests/*.bed /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests && cp -av /build/reproducible-path/pyranges-0.0.111+ds/tests/test_data /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests && cp -av /build/reproducible-path/pyranges-0.0.111+ds/tests/data /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests && cp -av /build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges '/build/reproducible-path/pyranges-0.0.111+ds/tests/chip_10.bed' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/chip_10.bed' '/build/reproducible-path/pyranges-0.0.111+ds/tests/f1.bed' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/f1.bed' '/build/reproducible-path/pyranges-0.0.111+ds/tests/f2.bed' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/f2.bed' '/build/reproducible-path/pyranges-0.0.111+ds/tests/test_data' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_data' '/build/reproducible-path/pyranges-0.0.111+ds/tests/test_data/ensembl.gtf' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_data/ensembl.gtf' '/build/reproducible-path/pyranges-0.0.111+ds/tests/test_data/gencode.gff3' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_data/gencode.gff3' '/build/reproducible-path/pyranges-0.0.111+ds/tests/test_data/ucsc_df_to_parse.txt' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_data/ucsc_df_to_parse.txt' '/build/reproducible-path/pyranges-0.0.111+ds/tests/test_data/test_sorted.bam' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_data/test_sorted.bam' '/build/reproducible-path/pyranges-0.0.111+ds/tests/test_data/test_sorted.bam.bai' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_data/test_sorted.bam.bai' '/build/reproducible-path/pyranges-0.0.111+ds/tests/data' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/data' '/build/reproducible-path/pyranges-0.0.111+ds/tests/data/test_data.py' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/data/test_data.py' '/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/chipseq_background.bed' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/example_data/chipseq_background.bed' '/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/ensembl.gtf' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/example_data/ensembl.gtf' '/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/ucsc_human.bed.gz' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/example_data/ucsc_human.bed.gz' '/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/aorta.bed' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/example_data/aorta.bed' '/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/ensembl_human.gtf.gz' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/example_data/ensembl_human.gtf.gz' '/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/exons.bed' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/example_data/exons.bed' '/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/f2.bed' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/example_data/f2.bed' '/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/bw.bw' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/example_data/bw.bw' '/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/f1.bed' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/example_data/f1.bed' '/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/cpg.bed' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/example_data/cpg.bed' '/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/lamina.bed' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/example_data/lamina.bed' '/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/gencode_human.gtf.gz' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/example_data/gencode_human.gtf.gz' '/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/chipseq.bed' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/example_data/chipseq.bed' '/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/chromsizes.bed' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/example_data/chromsizes.bed' '/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/aorta2.bed' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/example_data/aorta2.bed' '/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/control.bam' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/example_data/control.bam' '/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/control.bam.bai' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/example_data/control.bam.bai' I: pybuild base:311: cd /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build; python3.13 -m pytest -v -n 20 ============================= test session starts ============================== platform linux -- Python 3.13.1, pytest-8.3.4, pluggy-1.5.0 -- /usr/bin/python3.13 cachedir: .pytest_cache hypothesis profile 'default' -> database=DirectoryBasedExampleDatabase(PosixPath('/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/.hypothesis/examples')) rootdir: /build/reproducible-path/pyranges-0.0.111+ds plugins: hypothesis-6.122.1, xdist-3.6.1, typeguard-4.4.1 created: 20/20 workers 20 workers [531 items] scheduling tests via LoadScheduling tests/test_binary.py::test_k_nearest[None-False-same-last] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain25-method_chain25] tests/test_binary.py::test_nearest[upstream-True-same] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain7-method_chain7] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain19-method_chain19] tests/test_binary.py::test_overlap[same] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain43-method_chain43] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain37-method_chain37] tests/test_binary.py::test_jaccard[same] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain49-method_chain49] tests/test_binary.py::test_nearest[downstream-True-same] tests/test_binary.py::test_k_nearest[downstream-False-same-last] tests/test_binary.py::test_nearest[None-True-same] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain1-method_chain1] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain31-method_chain31] tests/data/test_data.py::test_all_data tests/test_binary.py::test_coverage[same] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain13-method_chain13] tests/test_change_chromosome_custom.py::test_change_chromosomes [gw10] [ 0%] PASSED tests/test_change_chromosome_custom.py::test_change_chromosomes tests/test_binary.py::test_k_nearest[upstream-False-same-last] tests/test_concat.py::test_concat_stranded_unstranded [gw10] [ 0%] PASSED tests/test_concat.py::test_concat_stranded_unstranded tests/test_concat.py::test_concat_unstranded_unstranded [gw10] [ 0%] PASSED tests/test_concat.py::test_concat_unstranded_unstranded tests/test_concat.py::test_concat_unstranded_stranded [gw10] [ 0%] PASSED tests/test_concat.py::test_concat_unstranded_stranded tests/test_count_overlaps.py::test_strand_vs_strand_same [gw10] [ 0%] PASSED tests/test_count_overlaps.py::test_strand_vs_strand_same tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain0-method_chain0] [gw0] [ 1%] PASSED tests/data/test_data.py::test_all_data tests/test_binary.py::test_set_intersect[False] [gw15] [ 1%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain31-method_chain31] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain32-method_chain32] [gw13] [ 1%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain13-method_chain13] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain14-method_chain14] [gw14] [ 1%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain19-method_chain19] [gw16] [ 1%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain25-method_chain25] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain20-method_chain20] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain26-method_chain26] [gw19] [ 2%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain43-method_chain43] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain44-method_chain44] [gw17] [ 2%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain37-method_chain37] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain38-method_chain38] [gw12] [ 2%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain7-method_chain7] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain8-method_chain8] [gw11] [ 2%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain1-method_chain1] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain2-method_chain2] [gw18] [ 2%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain49-method_chain49] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain50-method_chain50] [gw10] [ 3%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain0-method_chain0] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain55-method_chain55] [gw19] [ 3%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain44-method_chain44] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain45-method_chain45] [gw15] [ 3%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain32-method_chain32] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain33-method_chain33] [gw14] [ 3%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain20-method_chain20] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain21-method_chain21] [gw13] [ 3%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain14-method_chain14] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain15-method_chain15] [gw16] [ 3%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain26-method_chain26] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain27-method_chain27] [gw12] [ 4%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain8-method_chain8] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain9-method_chain9] [gw11] [ 4%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain2-method_chain2] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain3-method_chain3] [gw17] [ 4%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain38-method_chain38] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain39-method_chain39] [gw18] [ 4%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain50-method_chain50] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain51-method_chain51] [gw10] [ 4%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain55-method_chain55] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain56-method_chain56] [gw19] [ 5%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain45-method_chain45] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain46-method_chain46] [gw15] [ 5%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain33-method_chain33] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain34-method_chain34] [gw14] [ 5%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain21-method_chain21] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain22-method_chain22] [gw13] [ 5%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain15-method_chain15] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain16-method_chain16] [gw16] [ 5%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain27-method_chain27] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain28-method_chain28] [gw12] [ 6%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain9-method_chain9] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain10-method_chain10] [gw19] [ 6%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain46-method_chain46] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain47-method_chain47] [gw18] [ 6%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain51-method_chain51] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain52-method_chain52] [gw10] [ 6%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain56-method_chain56] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain57-method_chain57] [gw11] [ 6%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain3-method_chain3] [gw13] [ 6%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain16-method_chain16] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain4-method_chain4] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain17-method_chain17] [gw15] [ 7%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain34-method_chain34] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain35-method_chain35] [gw14] [ 7%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain22-method_chain22] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain23-method_chain23] [gw17] [ 7%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain39-method_chain39] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain40-method_chain40] [gw16] [ 7%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain28-method_chain28] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain29-method_chain29] [gw12] [ 7%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain10-method_chain10] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain11-method_chain11] [gw14] [ 8%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain23-method_chain23] [gw13] [ 8%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain17-method_chain17] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain18-method_chain18] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain24-method_chain24] [gw11] [ 8%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain4-method_chain4] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain5-method_chain5] [gw19] [ 8%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain47-method_chain47] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain48-method_chain48] [gw18] [ 8%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain52-method_chain52] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain53-method_chain53] [gw10] [ 9%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain57-method_chain57] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain58-method_chain58] [gw13] [ 9%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain18-method_chain18] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain64-method_chain64] [gw16] [ 9%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain29-method_chain29] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain30-method_chain30] [gw15] [ 9%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain35-method_chain35] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain36-method_chain36] [gw12] [ 9%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain11-method_chain11] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain12-method_chain12] [gw14] [ 9%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain24-method_chain24] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain73-method_chain73] [gw17] [ 10%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain40-method_chain40] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain41-method_chain41] [gw19] [ 10%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain48-method_chain48] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain81-method_chain81] [gw10] [ 10%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain58-method_chain58] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain59-method_chain59] [gw18] [ 10%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain53-method_chain53] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain54-method_chain54] [gw13] [ 10%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain64-method_chain64] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain65-method_chain65] [gw16] [ 11%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain30-method_chain30] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain89-method_chain89] [gw14] [ 11%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain73-method_chain73] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain74-method_chain74] [gw19] [ 11%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain81-method_chain81] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain82-method_chain82] [gw11] [ 11%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain5-method_chain5] [gw12] [ 11%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain12-method_chain12] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain105-method_chain105] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain6-method_chain6] [gw17] [ 12%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain41-method_chain41] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain42-method_chain42] [gw15] [ 12%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain36-method_chain36] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain97-method_chain97] [gw10] [ 12%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain59-method_chain59] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain60-method_chain60] [gw13] [ 12%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain65-method_chain65] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain66-method_chain66] [gw14] [ 12%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain74-method_chain74] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain75-method_chain75] [gw19] [ 12%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain82-method_chain82] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain83-method_chain83] [gw18] [ 13%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain54-method_chain54] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain113-method_chain113] [gw15] [ 13%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain97-method_chain97] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain98-method_chain98] [gw17] [ 13%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain42-method_chain42] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain127-method_chain127] [gw11] [ 13%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain6-method_chain6] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain120-method_chain120] [gw12] [ 13%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain105-method_chain105] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain106-method_chain106] [gw16] [ 14%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain89-method_chain89] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain90-method_chain90] [gw10] [ 14%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain60-method_chain60] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain61-method_chain61] [gw13] [ 14%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain66-method_chain66] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain67-method_chain67] [gw19] [ 14%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain83-method_chain83] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain84-method_chain84] [gw18] [ 14%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain113-method_chain113] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain114-method_chain114] [gw14] [ 15%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain75-method_chain75] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain76-method_chain76] [gw5] [ 15%] PASSED tests/test_binary.py::test_jaccard[same] tests/test_binary.py::test_join[False] [gw17] [ 15%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain127-method_chain127] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain128-method_chain128] [gw11] [ 15%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain120-method_chain120] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain121-method_chain121] [gw13] [ 15%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain67-method_chain67] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain68-method_chain68] [gw12] [ 16%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain106-method_chain106] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain107-method_chain107] [gw10] [ 16%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain61-method_chain61] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain62-method_chain62] [gw16] [ 16%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain90-method_chain90] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain91-method_chain91] [gw18] [ 16%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain114-method_chain114] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain115-method_chain115] [gw14] [ 16%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain76-method_chain76] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain77-method_chain77] [gw15] [ 16%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain98-method_chain98] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain99-method_chain99] [gw17] [ 17%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain128-method_chain128] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain129-method_chain129] [gw11] [ 17%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain121-method_chain121] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain122-method_chain122] [gw19] [ 17%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain84-method_chain84] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain85-method_chain85] [gw13] [ 17%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain68-method_chain68] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain69-method_chain69] [gw18] [ 17%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain115-method_chain115] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain116-method_chain116] [gw10] [ 18%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain62-method_chain62] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain63-method_chain63] [gw12] [ 18%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain107-method_chain107] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain108-method_chain108] [gw16] [ 18%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain91-method_chain91] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain92-method_chain92] [gw14] [ 18%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain77-method_chain77] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain78-method_chain78] [gw17] [ 18%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain129-method_chain129] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain130-method_chain130] [gw11] [ 19%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain122-method_chain122] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain123-method_chain123] [gw18] [ 19%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain116-method_chain116] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain117-method_chain117] [gw15] [ 19%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain99-method_chain99] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain100-method_chain100] [gw13] [ 19%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain69-method_chain69] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain70-method_chain70] [gw19] [ 19%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain85-method_chain85] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain86-method_chain86] [gw16] [ 19%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain92-method_chain92] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain93-method_chain93] [gw12] [ 20%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain108-method_chain108] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain109-method_chain109] [gw1] [ 20%] PASSED tests/test_binary.py::test_overlap[same] tests/test_binary.py::test_overlap[opposite] [gw14] [ 20%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain78-method_chain78] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain79-method_chain79] [gw17] [ 20%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain130-method_chain130] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain131-method_chain131] [gw10] [ 20%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain63-method_chain63] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain134-method_chain134] [gw11] [ 21%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain123-method_chain123] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain124-method_chain124] [gw18] [ 21%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain117-method_chain117] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain118-method_chain118] [gw15] [ 21%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain100-method_chain100] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain101-method_chain101] [gw16] [ 21%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain93-method_chain93] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain94-method_chain94] [gw13] [ 21%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain70-method_chain70] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain71-method_chain71] [gw12] [ 22%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain109-method_chain109] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain110-method_chain110] [gw14] [ 22%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain79-method_chain79] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain80-method_chain80] [gw19] [ 22%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain86-method_chain86] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain87-method_chain87] [gw17] [ 22%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain131-method_chain131] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain132-method_chain132] [gw18] [ 22%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain118-method_chain118] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain119-method_chain119] [gw11] [ 22%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain124-method_chain124] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain125-method_chain125] [gw16] [ 23%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain94-method_chain94] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain95-method_chain95] [gw10] [ 23%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain134-method_chain134] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain135-method_chain135] [gw14] [ 23%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain80-method_chain80] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain141-method_chain141] [gw13] [ 23%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain71-method_chain71] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain72-method_chain72] [gw12] [ 23%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain110-method_chain110] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain111-method_chain111] [gw15] [ 24%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain101-method_chain101] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain102-method_chain102] [gw17] [ 24%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain132-method_chain132] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain133-method_chain133] [gw19] [ 24%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain87-method_chain87] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain88-method_chain88] [gw11] [ 24%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain125-method_chain125] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain126-method_chain126] [gw16] [ 24%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain95-method_chain95] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain96-method_chain96] [gw13] [ 25%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain72-method_chain72] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain154-method_chain154] [gw18] [ 25%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain119-method_chain119] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain148-method_chain148] [gw14] [ 25%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain141-method_chain141] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain142-method_chain142] [gw10] [ 25%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain135-method_chain135] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain136-method_chain136] [gw12] [ 25%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain111-method_chain111] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain112-method_chain112] [gw15] [ 25%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain102-method_chain102] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain103-method_chain103] [gw4] [ 26%] PASSED tests/test_binary.py::test_nearest[upstream-True-same] tests/test_binary.py::test_nearest[upstream-True-opposite] [gw3] [ 26%] PASSED tests/test_binary.py::test_nearest[None-True-same] tests/test_binary.py::test_nearest[None-True-opposite] [gw16] [ 26%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain96-method_chain96] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain178-method_chain178] [gw19] [ 26%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain88-method_chain88] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain166-method_chain166] [gw11] [ 26%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain126-method_chain126] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain172-method_chain172] [gw0] [ 27%] PASSED tests/test_binary.py::test_set_intersect[False] tests/test_binary.py::test_set_intersect[same] [gw14] [ 27%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain142-method_chain142] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain143-method_chain143] [gw7] [ 27%] PASSED tests/test_binary.py::test_k_nearest[upstream-False-same-last] tests/test_binary.py::test_k_nearest[upstream-False-False-last] [gw17] [ 27%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain133-method_chain133] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain160-method_chain160] [gw13] [ 27%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain154-method_chain154] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain155-method_chain155] [gw8] [ 28%] PASSED tests/test_binary.py::test_nearest[downstream-True-same] tests/test_binary.py::test_nearest[downstream-True-opposite] [gw18] [ 28%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain148-method_chain148] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain149-method_chain149] [gw6] [ 28%] PASSED tests/test_binary.py::test_k_nearest[downstream-False-same-last] tests/test_binary.py::test_k_nearest[downstream-False-False-last] [gw12] [ 28%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain112-method_chain112] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain184-method_chain184] [gw16] [ 28%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain178-method_chain178] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain179-method_chain179] [gw11] [ 29%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain172-method_chain172] [gw10] [ 29%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain136-method_chain136] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain173-method_chain173] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain137-method_chain137] [gw15] [ 29%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain103-method_chain103] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain104-method_chain104] [gw19] [ 29%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain166-method_chain166] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain167-method_chain167] [gw14] [ 29%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain143-method_chain143] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain144-method_chain144] [gw17] [ 29%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain160-method_chain160] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain161-method_chain161] [gw13] [ 30%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain155-method_chain155] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain156-method_chain156] [gw9] [ 30%] PASSED tests/test_binary.py::test_k_nearest[None-False-same-last] tests/test_binary.py::test_k_nearest[None-False-False-last] [gw16] [ 30%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain179-method_chain179] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain180-method_chain180] [gw18] [ 30%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain149-method_chain149] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain150-method_chain150] [gw19] [ 30%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain167-method_chain167] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain168-method_chain168] [gw12] [ 31%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain184-method_chain184] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain185-method_chain185] [gw14] [ 31%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain144-method_chain144] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain145-method_chain145] [gw11] [ 31%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain173-method_chain173] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain174-method_chain174] [gw15] [ 31%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain104-method_chain104] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain190-method_chain190] [gw10] [ 31%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain137-method_chain137] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain138-method_chain138] [gw17] [ 32%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain161-method_chain161] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain162-method_chain162] [gw13] [ 32%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain156-method_chain156] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain157-method_chain157] [gw2] [ 32%] PASSED tests/test_binary.py::test_coverage[same] tests/test_binary.py::test_coverage[opposite] [gw16] [ 32%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain180-method_chain180] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain181-method_chain181] [gw11] [ 32%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain174-method_chain174] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain175-method_chain175] [gw14] [ 32%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain145-method_chain145] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain146-method_chain146] [gw15] [ 33%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain190-method_chain190] [gw19] [ 33%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain168-method_chain168] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain191-method_chain191] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain169-method_chain169] [gw18] [ 33%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain150-method_chain150] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain151-method_chain151] [gw17] [ 33%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain162-method_chain162] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain163-method_chain163] [gw12] [ 33%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain185-method_chain185] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain186-method_chain186] [gw13] [ 34%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain157-method_chain157] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain158-method_chain158] [gw10] [ 34%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain138-method_chain138] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain139-method_chain139] [gw15] [ 34%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain191-method_chain191] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain192-method_chain192] [gw16] [ 34%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain181-method_chain181] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain182-method_chain182] [gw14] [ 34%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain146-method_chain146] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain147-method_chain147] [gw11] [ 35%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain175-method_chain175] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain176-method_chain176] [gw19] [ 35%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain169-method_chain169] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain170-method_chain170] [gw17] [ 35%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain163-method_chain163] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain164-method_chain164] [gw13] [ 35%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain158-method_chain158] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain159-method_chain159] [gw12] [ 35%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain186-method_chain186] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain187-method_chain187] [gw18] [ 35%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain151-method_chain151] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain152-method_chain152] [gw15] [ 36%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain192-method_chain192] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain193-method_chain193] [gw11] [ 36%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain176-method_chain176] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain177-method_chain177] [gw19] [ 36%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain170-method_chain170] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain171-method_chain171] [gw10] [ 36%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain139-method_chain139] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain140-method_chain140] [gw17] [ 36%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain164-method_chain164] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain165-method_chain165] [gw16] [ 37%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain182-method_chain182] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain183-method_chain183] [gw11] [ 37%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain177-method_chain177] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain205-method_chain205] [gw15] [ 37%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain193-method_chain193] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain194-method_chain194] [gw14] [ 37%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain147-method_chain147] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain195-method_chain195] [gw13] [ 37%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain159-method_chain159] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain200-method_chain200] [gw17] [ 38%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain165-method_chain165] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain220-method_chain220] [gw5] [ 38%] PASSED tests/test_binary.py::test_join[False] tests/test_binary.py::test_join[same] [gw19] [ 38%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain171-method_chain171] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain210-method_chain210] [gw10] [ 38%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain140-method_chain140] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain215-method_chain215] [gw18] [ 38%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain152-method_chain152] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain153-method_chain153] [gw1] [ 38%] PASSED tests/test_binary.py::test_overlap[opposite] tests/test_binary.py::test_intersect[False] [gw12] [ 39%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain187-method_chain187] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain188-method_chain188] [gw15] [ 39%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain194-method_chain194] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain230-method_chain230] [gw14] [ 39%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain195-method_chain195] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain196-method_chain196] [gw11] [ 39%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain205-method_chain205] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain206-method_chain206] [gw19] [ 39%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain210-method_chain210] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain211-method_chain211] [gw16] [ 40%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain183-method_chain183] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain225-method_chain225] [gw17] [ 40%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain220-method_chain220] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain221-method_chain221] [gw13] [ 40%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain200-method_chain200] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain201-method_chain201] [gw10] [ 40%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain215-method_chain215] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain216-method_chain216] [gw15] [ 40%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain230-method_chain230] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain231-method_chain231] [gw18] [ 41%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain153-method_chain153] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain234-method_chain234] [gw16] [ 41%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain225-method_chain225] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain226-method_chain226] [gw19] [ 41%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain211-method_chain211] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain212-method_chain212] [gw12] [ 41%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain188-method_chain188] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain189-method_chain189] [gw17] [ 41%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain221-method_chain221] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain222-method_chain222] [gw11] [ 41%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain206-method_chain206] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain207-method_chain207] [gw10] [ 42%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain216-method_chain216] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain217-method_chain217] [gw14] [ 42%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain196-method_chain196] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain197-method_chain197] [gw16] [ 42%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain226-method_chain226] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain227-method_chain227] [gw13] [ 42%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain201-method_chain201] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain202-method_chain202] [gw19] [ 42%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain212-method_chain212] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain213-method_chain213] [gw11] [ 43%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain207-method_chain207] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain208-method_chain208] [gw12] [ 43%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain189-method_chain189] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain238-method_chain238] [gw15] [ 43%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain231-method_chain231] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain232-method_chain232] [gw18] [ 43%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain234-method_chain234] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain235-method_chain235] [gw17] [ 43%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain222-method_chain222] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain223-method_chain223] [gw10] [ 44%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain217-method_chain217] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain218-method_chain218] [gw16] [ 44%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain227-method_chain227] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain228-method_chain228] [gw19] [ 44%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain213-method_chain213] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain214-method_chain214] [gw14] [ 44%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain197-method_chain197] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain198-method_chain198] [gw13] [ 44%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain202-method_chain202] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain203-method_chain203] [gw12] [ 45%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain238-method_chain238] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain239-method_chain239] [gw10] [ 45%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain218-method_chain218] [gw17] [ 45%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain223-method_chain223] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain224-method_chain224] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain219-method_chain219] [gw11] [ 45%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain208-method_chain208] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain209-method_chain209] [gw18] [ 45%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain235-method_chain235] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain236-method_chain236] [gw16] [ 45%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain228-method_chain228] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain229-method_chain229] [gw19] [ 46%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain214-method_chain214] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain242-method_chain242] [gw15] [ 46%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain232-method_chain232] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain233-method_chain233] [gw12] [ 46%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain239-method_chain239] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain240-method_chain240] [gw13] [ 46%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain203-method_chain203] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain204-method_chain204] [gw10] [ 46%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain219-method_chain219] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain250-method_chain250] [gw16] [ 47%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain229-method_chain229] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain258-method_chain258] [gw17] [ 47%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain224-method_chain224] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain246-method_chain246] [gw14] [ 47%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain198-method_chain198] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain199-method_chain199] [gw19] [ 47%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain242-method_chain242] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain243-method_chain243] [gw11] [ 47%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain209-method_chain209] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain254-method_chain254] [gw4] [ 48%] PASSED tests/test_binary.py::test_nearest[upstream-True-opposite] tests/test_binary.py::test_nearest[upstream-False-False] [gw12] [ 48%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain240-method_chain240] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain241-method_chain241] [gw3] [ 48%] PASSED tests/test_binary.py::test_nearest[None-True-opposite] tests/test_binary.py::test_nearest[None-False-False] [gw13] [ 48%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain204-method_chain204] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain266-method_chain266] [gw15] [ 48%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain233-method_chain233] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain262-method_chain262] [gw18] [ 48%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain236-method_chain236] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain237-method_chain237] [gw16] [ 49%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain258-method_chain258] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain259-method_chain259] [gw19] [ 49%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain243-method_chain243] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain244-method_chain244] [gw11] [ 49%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain254-method_chain254] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain255-method_chain255] [gw8] [ 49%] PASSED tests/test_binary.py::test_nearest[downstream-True-opposite] [gw17] [ 49%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain246-method_chain246] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain247-method_chain247] tests/test_binary.py::test_nearest[downstream-False-False] [gw12] [ 50%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain241-method_chain241] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain273-method_chain273] [gw14] [ 50%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain199-method_chain199] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain270-method_chain270] [gw10] [ 50%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain250-method_chain250] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain251-method_chain251] [gw15] [ 50%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain262-method_chain262] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain263-method_chain263] [gw19] [ 50%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain244-method_chain244] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain245-method_chain245] [gw16] [ 51%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain259-method_chain259] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain260-method_chain260] [gw13] [ 51%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain266-method_chain266] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain267-method_chain267] [gw18] [ 51%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain237-method_chain237] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain276-method_chain276] [gw11] [ 51%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain255-method_chain255] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain256-method_chain256] [gw14] [ 51%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain270-method_chain270] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain271-method_chain271] [gw12] [ 51%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain273-method_chain273] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain274-method_chain274] [gw15] [ 52%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain263-method_chain263] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain264-method_chain264] [gw13] [ 52%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain267-method_chain267] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain268-method_chain268] [gw17] [ 52%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain247-method_chain247] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain248-method_chain248] [gw10] [ 52%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain251-method_chain251] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain252-method_chain252] [gw0] [ 52%] PASSED tests/test_binary.py::test_set_intersect[same] tests/test_binary.py::test_set_union[False] [gw16] [ 53%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain260-method_chain260] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain261-method_chain261] [gw18] [ 53%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain276-method_chain276] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain277-method_chain277] [gw11] [ 53%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain256-method_chain256] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain257-method_chain257] [gw12] [ 53%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain274-method_chain274] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain275-method_chain275] [gw19] [ 53%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain245-method_chain245] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain279-method_chain279] [gw15] [ 54%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain264-method_chain264] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain265-method_chain265] [gw13] [ 54%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain268-method_chain268] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain269-method_chain269] [gw16] [ 54%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain261-method_chain261] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain282-method_chain282] [gw18] [ 54%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain277-method_chain277] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain278-method_chain278] [gw6] [ 54%] PASSED tests/test_binary.py::test_k_nearest[downstream-False-False-last] [gw10] [ 54%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain252-method_chain252] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain253-method_chain253] [gw14] [ 55%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain271-method_chain271] [gw17] [ 55%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain248-method_chain248] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain272-method_chain272] tests/test_binary.py::test_k_nearest[downstream-True-opposite-last] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain249-method_chain249] [gw11] [ 55%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain257-method_chain257] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain285-method_chain285] [gw7] [ 55%] PASSED tests/test_binary.py::test_k_nearest[upstream-False-False-last] [gw12] [ 55%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain275-method_chain275] tests/test_binary.py::test_k_nearest[upstream-True-opposite-last] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain288-method_chain288] [gw15] [ 56%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain265-method_chain265] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain291-method_chain291] [gw19] [ 56%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain279-method_chain279] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain280-method_chain280] [gw18] [ 56%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain278-method_chain278] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain297-method_chain297] [gw13] [ 56%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain269-method_chain269] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain294-method_chain294] [gw14] [ 56%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain272-method_chain272] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain303-method_chain303] [gw10] [ 57%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain253-method_chain253] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain300-method_chain300] [gw17] [ 57%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain249-method_chain249] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain306-method_chain306] [gw16] [ 57%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain282-method_chain282] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain283-method_chain283] [gw12] [ 57%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain288-method_chain288] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain289-method_chain289] [gw1] [ 57%] PASSED tests/test_binary.py::test_intersect[False] tests/test_binary.py::test_intersect[same] [gw15] [ 58%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain291-method_chain291] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain292-method_chain292] [gw5] [ 58%] PASSED tests/test_binary.py::test_join[same] tests/test_binary.py::test_join[opposite] [gw12] [ 58%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain289-method_chain289] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain290-method_chain290] [gw14] [ 58%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain303-method_chain303] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain304-method_chain304] [gw11] [ 58%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain285-method_chain285] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain286-method_chain286] [gw19] [ 58%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain280-method_chain280] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain281-method_chain281] [gw16] [ 59%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain283-method_chain283] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain284-method_chain284] [gw10] [ 59%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain300-method_chain300] [gw17] [ 59%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain306-method_chain306] [gw15] [ 59%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain292-method_chain292] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain307-method_chain307] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain293-method_chain293] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain301-method_chain301] [gw18] [ 59%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain297-method_chain297] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain298-method_chain298] [gw9] [ 60%] PASSED tests/test_binary.py::test_k_nearest[None-False-False-last] tests/test_binary.py::test_k_nearest[None-True-opposite-last] [gw13] [ 60%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain294-method_chain294] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain295-method_chain295] [gw12] [ 60%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain290-method_chain290] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain309-method_chain309] [gw2] [ 60%] PASSED tests/test_binary.py::test_coverage[opposite] tests/test_binary.py::test_subtraction[same] [gw14] [ 60%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain304-method_chain304] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain305-method_chain305] [gw15] [ 61%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain293-method_chain293] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain315-method_chain315] [gw16] [ 61%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain284-method_chain284] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain313-method_chain313] [gw17] [ 61%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain307-method_chain307] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain308-method_chain308] [gw11] [ 61%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain286-method_chain286] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain287-method_chain287] [gw19] [ 61%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain281-method_chain281] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain311-method_chain311] [gw10] [ 61%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain301-method_chain301] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain302-method_chain302] [gw18] [ 62%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain298-method_chain298] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain299-method_chain299] [gw12] [ 62%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain309-method_chain309] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain310-method_chain310] [gw13] [ 62%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain295-method_chain295] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain296-method_chain296] [gw16] [ 62%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain313-method_chain313] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain314-method_chain314] [gw11] [ 62%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain287-method_chain287] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain321-method_chain321] [gw14] [ 63%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain305-method_chain305] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain317-method_chain317] [gw19] [ 63%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain311-method_chain311] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain312-method_chain312] [gw15] [ 63%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain315-method_chain315] [gw17] [ 63%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain308-method_chain308] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain316-method_chain316] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain319-method_chain319] [gw12] [ 63%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain310-method_chain310] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain327-method_chain327] [gw10] [ 64%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain302-method_chain302] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain323-method_chain323] [gw13] [ 64%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain296-method_chain296] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain329-method_chain329] [gw16] [ 64%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain314-method_chain314] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain331-method_chain331] [gw14] [ 64%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain317-method_chain317] [gw18] [ 64%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain299-method_chain299] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain318-method_chain318] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain325-method_chain325] [gw11] [ 64%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain321-method_chain321] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain322-method_chain322] [gw19] [ 65%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain312-method_chain312] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain333-method_chain333] [gw17] [ 65%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain319-method_chain319] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain320-method_chain320] [gw15] [ 65%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain316-method_chain316] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain335-method_chain335] [gw12] [ 65%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain327-method_chain327] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain328-method_chain328] [gw10] [ 65%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain323-method_chain323] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain324-method_chain324] [gw18] [ 66%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain325-method_chain325] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain326-method_chain326] [gw14] [ 66%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain318-method_chain318] [gw12] [ 66%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain328-method_chain328] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain337-method_chain337] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain343-method_chain343] [gw16] [ 66%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain331-method_chain331] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain332-method_chain332] [gw10] [ 66%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain324-method_chain324] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain345-method_chain345] [gw11] [ 67%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain322-method_chain322] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain339-method_chain339] [gw17] [ 67%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain320-method_chain320] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain341-method_chain341] [gw19] [ 67%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain333-method_chain333] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain334-method_chain334] [gw13] [ 67%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain329-method_chain329] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain330-method_chain330] [gw15] [ 67%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain335-method_chain335] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain336-method_chain336] [gw18] [ 67%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain326-method_chain326] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain347-method_chain347] [gw14] [ 68%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain337-method_chain337] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain338-method_chain338] [gw11] [ 68%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain339-method_chain339] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain340-method_chain340] [gw10] [ 68%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain345-method_chain345] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain346-method_chain346] [gw17] [ 68%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain341-method_chain341] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain342-method_chain342] [gw12] [ 68%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain343-method_chain343] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain344-method_chain344] [gw15] [ 69%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain336-method_chain336] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain351-method_chain351] [gw16] [ 69%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain332-method_chain332] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain348-method_chain348] [gw13] [ 69%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain330-method_chain330] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain350-method_chain350] [gw18] [ 69%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain347-method_chain347] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain352-method_chain352] [gw11] [ 69%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain340-method_chain340] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain354-method_chain354] [gw14] [ 70%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain338-method_chain338] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain353-method_chain353] [gw19] [ 70%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain334-method_chain334] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain349-method_chain349] [gw17] [ 70%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain342-method_chain342] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain356-method_chain356] [gw10] [ 70%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain346-method_chain346] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain355-method_chain355] [gw15] [ 70%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain351-method_chain351] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain358-method_chain358] [gw13] [ 70%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain350-method_chain350] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain360-method_chain360] [gw11] [ 71%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain354-method_chain354] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain362-method_chain362] [gw12] [ 71%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain344-method_chain344] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain357-method_chain357] [gw14] [ 71%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain353-method_chain353] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain363-method_chain363] [gw18] [ 71%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain352-method_chain352] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain361-method_chain361] [gw19] [ 71%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain349-method_chain349] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain364-method_chain364] [gw16] [ 72%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain348-method_chain348] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain359-method_chain359] [gw4] [ 72%] PASSED tests/test_binary.py::test_nearest[upstream-False-False] [gw17] [ 72%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain356-method_chain356] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain365-method_chain365] tests/test_binary.py::test_nearest[upstream-False-same] [gw3] [ 72%] PASSED tests/test_binary.py::test_nearest[None-False-False] tests/test_binary.py::test_nearest[None-False-same] [gw10] [ 72%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain355-method_chain355] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain366-method_chain366] [gw15] [ 73%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain358-method_chain358] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain367-method_chain367] [gw13] [ 73%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain360-method_chain360] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain368-method_chain368] [gw8] [ 73%] PASSED tests/test_binary.py::test_nearest[downstream-False-False] [gw11] [ 73%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain362-method_chain362] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain369-method_chain369] [gw18] [ 73%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain361-method_chain361] [gw14] [ 74%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain363-method_chain363] tests/test_binary.py::test_nearest[downstream-False-same] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain372-method_chain372] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain371-method_chain371] [gw12] [ 74%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain357-method_chain357] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain370-method_chain370] [gw16] [ 74%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain359-method_chain359] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain374-method_chain374] [gw19] [ 74%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain364-method_chain364] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain373-method_chain373] [gw17] [ 74%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain365-method_chain365] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain375-method_chain375] [gw15] [ 74%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain367-method_chain367] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain377-method_chain377] [gw10] [ 75%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain366-method_chain366] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain376-method_chain376] [gw13] [ 75%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain368-method_chain368] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain378-method_chain378] [gw18] [ 75%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain372-method_chain372] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain380-method_chain380] [gw11] [ 75%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain369-method_chain369] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain379-method_chain379] [gw12] [ 75%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain370-method_chain370] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain382-method_chain382] [gw16] [ 76%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain374-method_chain374] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain383-method_chain383] [gw14] [ 76%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain371-method_chain371] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain381-method_chain381] [gw17] [ 76%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain375-method_chain375] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain385-method_chain385] [gw19] [ 76%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain373-method_chain373] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain384-method_chain384] [gw15] [ 76%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain377-method_chain377] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain386-method_chain386] [gw10] [ 77%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain376-method_chain376] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain387-method_chain387] [gw5] [ 77%] PASSED tests/test_binary.py::test_join[opposite] tests/test_binary.py::test_reldist [gw1] [ 77%] PASSED tests/test_binary.py::test_intersect[same] tests/test_binary.py::test_intersect[opposite] [gw12] [ 77%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain382-method_chain382] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain391-method_chain391] [gw17] [ 77%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain385-method_chain385] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain394-method_chain394] [gw18] [ 77%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain380-method_chain380] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain389-method_chain389] [gw15] [ 78%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain386-method_chain386] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain396-method_chain396] [gw11] [ 78%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain379-method_chain379] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain390-method_chain390] [gw10] [ 78%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain387-method_chain387] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain397-method_chain397] [gw13] [ 78%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain378-method_chain378] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain388-method_chain388] [gw14] [ 78%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain381-method_chain381] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain393-method_chain393] [gw16] [ 79%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain383-method_chain383] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain392-method_chain392] [gw19] [ 79%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain384-method_chain384] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain395-method_chain395] [gw12] [ 79%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain391-method_chain391] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain398-method_chain398] [gw18] [ 79%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain389-method_chain389] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain400-method_chain400] [gw13] [ 79%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain388-method_chain388] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain404-method_chain404] [gw11] [ 80%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain390-method_chain390] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain402-method_chain402] [gw17] [ 80%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain394-method_chain394] [gw15] [ 80%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain396-method_chain396] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain399-method_chain399] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain401-method_chain401] [gw14] [ 80%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain393-method_chain393] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain405-method_chain405] [gw12] [ 80%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain398-method_chain398] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain408-method_chain408] [gw10] [ 80%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain397-method_chain397] [gw18] [ 81%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain400-method_chain400] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain403-method_chain403] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain409-method_chain409] [gw19] [ 81%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain395-method_chain395] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain407-method_chain407] [gw16] [ 81%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain392-method_chain392] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain406-method_chain406] [gw13] [ 81%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain404-method_chain404] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain410-method_chain410] [gw11] [ 81%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain402-method_chain402] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain411-method_chain411] [gw0] [ 82%] PASSED tests/test_binary.py::test_set_union[False] [gw15] [ 82%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain401-method_chain401] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain413-method_chain413] tests/test_binary.py::test_set_union[same] [gw6] [ 82%] PASSED tests/test_binary.py::test_k_nearest[downstream-True-opposite-last] tests/test_binary.py::test_k_nearest[downstream-True-same-last] [gw17] [ 82%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain399-method_chain399] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain412-method_chain412] [gw12] [ 82%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain408-method_chain408] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain415-method_chain415] [gw14] [ 83%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain405-method_chain405] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain414-method_chain414] [gw18] [ 83%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain409-method_chain409] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain417-method_chain417] [gw7] [ 83%] PASSED tests/test_binary.py::test_k_nearest[upstream-True-opposite-last] tests/test_binary.py::test_k_nearest[upstream-True-same-last] [gw10] [ 83%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain403-method_chain403] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain416-method_chain416] [gw19] [ 83%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain407-method_chain407] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain418-method_chain418] [gw13] [ 83%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain410-method_chain410] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain420-method_chain420] [gw11] [ 84%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain411-method_chain411] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain421-method_chain421] [gw16] [ 84%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain406-method_chain406] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain419-method_chain419] [gw15] [ 84%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain413-method_chain413] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain422-method_chain422] [gw17] [ 84%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain412-method_chain412] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain423-method_chain423] [gw12] [ 84%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain415-method_chain415] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain424-method_chain424] [gw18] [ 85%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain417-method_chain417] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain426-method_chain426] [gw14] [ 85%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain414-method_chain414] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain425-method_chain425] [gw19] [ 85%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain418-method_chain418] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain428-method_chain428] [gw10] [ 85%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain416-method_chain416] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain427-method_chain427] [gw11] [ 85%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain421-method_chain421] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain430-method_chain430] [gw13] [ 86%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain420-method_chain420] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain429-method_chain429] [gw15] [ 86%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain422-method_chain422] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain432-method_chain432] [gw16] [ 86%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain419-method_chain419] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain431-method_chain431] [gw17] [ 86%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain423-method_chain423] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain433-method_chain433] [gw12] [ 86%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain424-method_chain424] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain434-method_chain434] [gw18] [ 87%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain426-method_chain426] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain435-method_chain435] [gw14] [ 87%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain425-method_chain425] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain436-method_chain436] [gw17] [ 87%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain433-method_chain433] tests/test_getset_attr.py::test_getsetattr_fails [gw17] [ 87%] PASSED tests/test_getset_attr.py::test_getsetattr_fails tests/test_io.py::test_read_bed [gw17] [ 87%] PASSED tests/test_io.py::test_read_bed tests/test_pickle.py::test_pickle [gw17] [ 87%] PASSED tests/test_pickle.py::test_pickle tests/test_stranded.py::test_stranded [gw17] [ 88%] PASSED tests/test_stranded.py::test_stranded tests/test_stranded.py::test_unstrand [gw17] [ 88%] PASSED tests/test_stranded.py::test_unstrand tests/test_unary.py::test_merge[True] [gw12] [ 88%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain434-method_chain434] tests/test_getset_attr.py::test_getsetattr_with_str [gw12] [ 88%] PASSED tests/test_getset_attr.py::test_getsetattr_with_str tests/test_unary.py::test_cluster[True] [gw11] [ 88%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain430-method_chain430] [gw13] [ 89%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain429-method_chain429] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain439-method_chain439] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain440-method_chain440] [gw16] [ 89%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain431-method_chain431] tests/test_getset_attr.py::test_getsetattr [gw16] [ 89%] PASSED tests/test_getset_attr.py::test_getsetattr tests/test_unary.py::test_merge_by[True] [gw19] [ 89%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain428-method_chain428] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain437-method_chain437] [gw18] [ 89%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain435-method_chain435] tests/test_io.py::test_read_gtf [gw18] [ 90%] PASSED tests/test_io.py::test_read_gtf tests/test_unary.py::test_init[True] [gw15] [ 90%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain432-method_chain432] tests/test_genomicfeatures.py::test_introns_single [gw10] [ 90%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain427-method_chain427] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain438-method_chain438] [gw14] [ 90%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain436-method_chain436] tests/test_io.py::test_read_gff3 [gw14] [ 90%] PASSED tests/test_io.py::test_read_gff3 tests/windows/test_windows.py::test_windows [gw14] [ 90%] PASSED tests/windows/test_windows.py::test_windows tests/windows/test_windows.py::test_windows2 [gw14] [ 91%] PASSED tests/windows/test_windows.py::test_windows2 [gw9] [ 91%] PASSED tests/test_binary.py::test_k_nearest[None-True-opposite-last] tests/test_binary.py::test_k_nearest[None-True-same-last] [gw11] [ 91%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain439-method_chain439] tests/test_unary.py::test_cluster_by[False] [gw13] [ 91%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain440-method_chain440] tests/test_unary.py::test_cluster_by[True] [gw19] [ 91%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain437-method_chain437] tests/test_unary.py::test_windows [gw10] [ 92%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain438-method_chain438] tests/test_unary.py::test_summary [gw15] [ 92%] PASSED tests/test_genomicfeatures.py::test_introns_single tests/test_unary.py::test_getitem [gw2] [ 92%] PASSED tests/test_binary.py::test_subtraction[same] tests/test_binary.py::test_subtraction[opposite] [gw18] [ 92%] PASSED tests/test_unary.py::test_init[True] tests/test_unary.py::test_init[False] [gw5] [ 92%] PASSED tests/test_binary.py::test_reldist tests/test_binary.py::test_k_nearest[downstream-False-opposite-last] [gw8] [ 93%] PASSED tests/test_binary.py::test_nearest[downstream-False-same] tests/test_binary.py::test_nearest[downstream-False-opposite] [gw1] [ 93%] PASSED tests/test_binary.py::test_intersect[opposite] [gw4] [ 93%] PASSED tests/test_binary.py::test_nearest[upstream-False-same] tests/test_binary.py::test_coverage[False] tests/test_binary.py::test_nearest[upstream-False-opposite] [gw3] [ 93%] PASSED tests/test_binary.py::test_nearest[None-False-same] tests/test_binary.py::test_nearest[None-False-opposite] [gw18] [ 93%] PASSED tests/test_unary.py::test_init[False] [gw15] [ 93%] PASSED tests/test_unary.py::test_getitem [gw10] [ 94%] PASSED tests/test_unary.py::test_summary [gw0] [ 94%] PASSED tests/test_binary.py::test_set_union[same] tests/test_binary.py::test_overlap[False] [gw17] [ 94%] PASSED tests/test_unary.py::test_merge[True] tests/test_unary.py::test_merge[False] [gw16] [ 94%] PASSED tests/test_unary.py::test_merge_by[True] tests/test_unary.py::test_merge_by[False] [gw19] [ 94%] PASSED tests/test_unary.py::test_windows [gw6] [ 95%] PASSED tests/test_binary.py::test_k_nearest[downstream-True-same-last] tests/test_binary.py::test_k_nearest[downstream-True-False-last] [gw8] [ 95%] PASSED tests/test_binary.py::test_nearest[downstream-False-opposite] tests/test_binary.py::test_jaccard[False] [gw12] [ 95%] PASSED tests/test_unary.py::test_cluster[True] tests/test_unary.py::test_cluster[False] [gw7] [ 95%] PASSED tests/test_binary.py::test_k_nearest[upstream-True-same-last] tests/test_binary.py::test_k_nearest[upstream-True-False-last] [gw4] [ 95%] PASSED tests/test_binary.py::test_nearest[upstream-False-opposite] tests/test_binary.py::test_nearest[downstream-True-False] [gw3] [ 96%] PASSED tests/test_binary.py::test_nearest[None-False-opposite] tests/test_binary.py::test_nearest[upstream-True-False] [gw5] [ 96%] PASSED tests/test_binary.py::test_k_nearest[downstream-False-opposite-last] [gw2] [ 96%] PASSED tests/test_binary.py::test_subtraction[opposite] tests/test_binary.py::test_subtraction[False] [gw13] [ 96%] PASSED tests/test_unary.py::test_cluster_by[True] [gw9] [ 96%] PASSED tests/test_binary.py::test_k_nearest[None-True-same-last] tests/test_binary.py::test_k_nearest[None-True-False-last] [gw1] [ 96%] PASSED tests/test_binary.py::test_coverage[False] [gw0] [ 97%] PASSED tests/test_binary.py::test_overlap[False] [gw17] [ 97%] PASSED tests/test_unary.py::test_merge[False] [gw11] [ 97%] PASSED tests/test_unary.py::test_cluster_by[False] [gw8] [ 97%] PASSED tests/test_binary.py::test_jaccard[False] [gw16] [ 97%] PASSED tests/test_unary.py::test_merge_by[False] [gw3] [ 98%] PASSED tests/test_binary.py::test_nearest[upstream-True-False] [gw4] [ 98%] PASSED tests/test_binary.py::test_nearest[downstream-True-False] [gw12] [ 98%] PASSED tests/test_unary.py::test_cluster[False] [gw6] [ 98%] PASSED tests/test_binary.py::test_k_nearest[downstream-True-False-last] tests/test_binary.py::test_k_nearest[upstream-False-opposite-last] [gw2] [ 98%] PASSED tests/test_binary.py::test_subtraction[False] tests/test_binary.py::test_nearest[None-True-False] [gw7] [ 99%] PASSED tests/test_binary.py::test_k_nearest[upstream-True-False-last] tests/test_binary.py::test_k_nearest[None-False-opposite-last] [gw9] [ 99%] PASSED tests/test_binary.py::test_k_nearest[None-True-False-last] tests/test_binary.py::test_k_nearest_1_vs_nearest [gw6] [ 99%] PASSED tests/test_binary.py::test_k_nearest[upstream-False-opposite-last] [gw2] [ 99%] PASSED tests/test_binary.py::test_nearest[None-True-False] [gw9] [ 99%] PASSED tests/test_binary.py::test_k_nearest_1_vs_nearest [gw7] [100%] FAILED tests/test_binary.py::test_k_nearest[None-False-opposite-last] =================================== FAILURES =================================== ___________________ test_k_nearest[None-False-opposite-last] ___________________ [gw7] linux -- Python 3.13.1 /usr/bin/python3.13 nearest_how = None, overlap = False, strandedness = 'opposite', ties = 'last' @pytest.mark.bedtools > @pytest.mark.explore tests/test_binary.py:510: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ tests/test_binary.py:559: in test_k_nearest compare_results_nearest(bedtools_df, result) tests/test_binary.py:107: in compare_results_nearest assert_df_equal(result_df, bedtools_df) tests/helpers.py:58: in assert_df_equal print("index equal", df1.index == df2.index) /usr/lib/python3/dist-packages/pandas/core/ops/common.py:76: in new_method return method(self, other) /usr/lib/python3/dist-packages/pandas/core/arraylike.py:40: in __eq__ return self._cmp_method(other, operator.eq) /usr/lib/python3/dist-packages/pandas/core/indexes/range.py:1070: in _cmp_method return super()._cmp_method(other, op) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = RangeIndex(start=0, stop=2, step=1) other = RangeIndex(start=0, stop=1, step=1), op = def _cmp_method(self, other, op): """ Wrapper used to dispatch comparison operations. """ if self.is_(other): # fastpath if op in {operator.eq, operator.le, operator.ge}: arr = np.ones(len(self), dtype=bool) if self._can_hold_na and not isinstance(self, ABCMultiIndex): # TODO: should set MultiIndex._can_hold_na = False? arr[self.isna()] = False return arr elif op is operator.ne: arr = np.zeros(len(self), dtype=bool) if self._can_hold_na and not isinstance(self, ABCMultiIndex): arr[self.isna()] = True return arr if isinstance(other, (np.ndarray, Index, ABCSeries, ExtensionArray)) and len( self ) != len(other): > raise ValueError("Lengths must match to compare") E ValueError: Lengths must match to compare E Falsifying example: test_k_nearest( E nearest_how=None, E overlap=False, E strandedness='opposite', E ties='last', E gr=+--------------+-----------+-----------+------------+-----------+--------------+ E | Chromosome | Start | End | Name | Score | Strand | E | (category) | (int64) | (int64) | (object) | (int64) | (category) | E |--------------+-----------+-----------+------------+-----------+--------------| E | chr1 | 2 | 3 | a | 0 | + | E | chr1 | 2 | 3 | a | 0 | - | E | chr1 | 2 | 3 | a | 0 | - | E | chr1 | 2 | 3 | a | 0 | - | E | ... | ... | ... | ... | ... | ... | E | chr1 | 2 | 3 | a | 0 | - | E | chr1 | 2 | 3 | a | 0 | - | E | chr1 | 2 | 3 | a | 0 | - | E | chr1 | 2 | 3 | a | 0 | - | E +--------------+-----------+-----------+------------+-----------+--------------+ E Stranded PyRanges object has 9 rows and 6 columns from 2 chromosomes. E For printing, the PyRanges was sorted on Chromosome and Strand., E gr2=+--------------+-----------+-----------+------------+-----------+--------------+ E | Chromosome | Start | End | Name | Score | Strand | E | (category) | (int64) | (int64) | (object) | (int64) | (category) | E |--------------+-----------+-----------+------------+-----------+--------------| E | chr1 | 1 | 2 | a | 0 | - | E | chr1 | 3 | 4 | a | 0 | - | E +--------------+-----------+-----------+------------+-----------+--------------+ E Stranded PyRanges object has 2 rows and 6 columns from 1 chromosomes. E For printing, the PyRanges was sorted on Chromosome and Strand., E ) E Explanation: E These lines were always and only run by failing examples: E /usr/lib/python3/dist-packages/pandas/core/indexes/base.py:7182 E /usr/lib/python3/dist-packages/pandas/core/indexes/base.py:7184 E /usr/lib/python3/dist-packages/pandas/core/indexes/range.py:1070 E E You can reproduce this example by temporarily adding @reproduce_failure('6.122.1', b'AXicY2QAAUYGBmnfB0BSOTAESKpPucMIFgaSyaZ2QDLd2wNIdorxA8nJEy8ANTCCABMjIzMDEyMLIyMrIyMbIyM7IyMHWCfYSDAJVscBMQsmzAjigllMDEiAEQCHXAh0') as a decorator on your test case /usr/lib/python3/dist-packages/pandas/core/indexes/base.py:7185: ValueError ----------------------------- Captured stdout call ----------------------------- ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp2gip6x9_/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp2gip6x9_/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpcuq7p0cy/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpcuq7p0cy/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp4l77kooy/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp4l77kooy/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpwu_t3szx/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpwu_t3szx/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpkg4jogs5/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpkg4jogs5/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp6sjktzev/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp6sjktzev/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpe5c6_ypq/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpe5c6_ypq/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 3946610 3952299 + 3119527 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 3946610 | 3952299 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 3946610 3952299 + 3119527 df2 Chromosome Start End Strand Distance 0 chr1 3946610 3952299 + 3119527 Actual Chromosome Start End Strand Distance 0 chr1 3946610 3952299 + 3119527 Expected Chromosome Start End Strand Distance 0 chr1 3946610 3952299 + 3119527 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=1, step=1) Expected index RangeIndex(start=0, stop=1, step=1) index equal [ True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp3x4plr_b/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp3x4plr_b/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpkct_o9py/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpkct_o9py/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpoi413le_/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpoi413le_/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpwvmhqb57/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpwvmhqb57/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpu1h_t3rm/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpu1h_t3rm/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 1 8332 + 3380605 1 chr1 1552303 1560367 + 1828570 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 1 | 8332 | a | 0 | ... | | chr1 | 1552303 | 1560367 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 1 8332 + 3380605 1 chr1 1552303 1560367 + 1828570 df2 Chromosome Start End Strand Distance 0 chr1 1 8332 + 3380605 1 chr1 1552303 1560367 + 1828570 Actual Chromosome Start End Strand Distance 0 chr1 1 8332 + 3380605 1 chr1 1552303 1560367 + 1828570 Expected Chromosome Start End Strand Distance 0 chr1 1 8332 + 3380605 1 chr1 1552303 1560367 + 1828570 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=2, step=1) Expected index RangeIndex(start=0, stop=2, step=1) index equal [ True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpw85xxal7/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpw85xxal7/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 1552303 1552304 + 1552302 1 chr1 5702111 5702112 + 5702110 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 1552303 | 1552304 | a | 0 | ... | | chr1 | 5702111 | 5702112 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 1552303 1552304 + 1552302 1 chr1 5702111 5702112 + 5702110 df2 Chromosome Start End Strand Distance 0 chr1 1552303 1552304 + 1552302 1 chr1 5702111 5702112 + 5702110 Actual Chromosome Start End Strand Distance 0 chr1 1552303 1552304 + 1552302 1 chr1 5702111 5702112 + 5702110 Expected Chromosome Start End Strand Distance 0 chr1 1552303 1552304 + 1552302 1 chr1 5702111 5702112 + 5702110 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=2, step=1) Expected index RangeIndex(start=0, stop=2, step=1) index equal [ True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpm46blve8/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpm46blve8/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 1552303 1552304 + 1552302 1 chr1 5702111 5702112 + 5702110 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 1552303 | 1552304 | a | 0 | ... | | chr1 | 5702111 | 5702112 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 1552303 1552304 + 1552302 1 chr1 5702111 5702112 + 5702110 df2 Chromosome Start End Strand Distance 0 chr1 1552303 1552304 + 1552302 1 chr1 5702111 5702112 + 5702110 Actual Chromosome Start End Strand Distance 0 chr1 1552303 1552304 + 1552302 1 chr1 5702111 5702112 + 5702110 Expected Chromosome Start End Strand Distance 0 chr1 1552303 1552304 + 1552302 1 chr1 5702111 5702112 + 5702110 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=2, step=1) Expected index RangeIndex(start=0, stop=2, step=1) index equal [ True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmps1b09sds/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmps1b09sds/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp7rtd_rpl/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp7rtd_rpl/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp66dkx219/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp66dkx219/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp0spjf1dd/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp0spjf1dd/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpj6poj9zy/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpj6poj9zy/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpuylfcdrk/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpuylfcdrk/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 81258 86943 + 2009581 1 chr1 81258 86943 + 4932725 2 chr1 2338358 2347970 + 236107 3 chr1 2338358 2347970 + 2671698 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 2338358 | 2347970 | a | 0 | ... | | chr1 | 2338358 | 2347970 | a | 0 | ... | | chr1 | 81258 | 86943 | a | 0 | ... | | chr1 | 81258 | 86943 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 4 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 2 chr1 81258 86943 + 2009581 3 chr1 81258 86943 + 4932725 0 chr1 2338358 2347970 + 236107 1 chr1 2338358 2347970 + 2671698 df2 Chromosome Start End Strand Distance 0 chr1 81258 86943 + 2009581 1 chr1 81258 86943 + 4932725 2 chr1 2338358 2347970 + 236107 3 chr1 2338358 2347970 + 2671698 Actual Chromosome Start End Strand Distance 0 chr1 81258 86943 + 2009581 1 chr1 81258 86943 + 4932725 2 chr1 2338358 2347970 + 236107 3 chr1 2338358 2347970 + 2671698 Expected Chromosome Start End Strand Distance 0 chr1 81258 86943 + 2009581 1 chr1 81258 86943 + 4932725 2 chr1 2338358 2347970 + 236107 3 chr1 2338358 2347970 + 2671698 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=4, step=1) Expected index RangeIndex(start=0, stop=4, step=1) index equal [ True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmps6rxu5wp/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmps6rxu5wp/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 2096523 2102252 - 2917416 1 chr1 5019667 5023607 + 2226390 2 chr1 5019667 5023607 + 2917416 6 chr1 7249996 7256209 - 2226390 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 5019667 | 5023607 | a | 0 | ... | | chr1 | 5019667 | 5023607 | a | 0 | ... | | chr1 | 2096523 | 2102252 | a | 0 | ... | | chr1 | 7249996 | 7256209 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 4 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 2 chr1 2096523 2102252 - 2917416 0 chr1 5019667 5023607 + 2226390 1 chr1 5019667 5023607 + 2917416 3 chr1 7249996 7256209 - 2226390 df2 Chromosome Start End Strand Distance 0 chr1 2096523 2102252 - 2917416 1 chr1 5019667 5023607 + 2226390 2 chr1 5019667 5023607 + 2917416 6 chr1 7249996 7256209 - 2226390 Actual Chromosome Start End Strand Distance 0 chr1 2096523 2102252 - 2917416 1 chr1 5019667 5023607 + 2226390 2 chr1 5019667 5023607 + 2917416 3 chr1 7249996 7256209 - 2226390 Expected Chromosome Start End Strand Distance 0 chr1 2096523 2102252 - 2917416 1 chr1 5019667 5023607 + 2226390 2 chr1 5019667 5023607 + 2917416 3 chr1 7249996 7256209 - 2226390 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=4, step=1) Expected index RangeIndex(start=0, stop=4, step=1) index equal [ True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp06zu0pei/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp06zu0pei/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 2096523 2102252 - 2088333 1 chr1 2096523 2102252 - 2093298 3 chr1 5019667 5026732 - 5011477 4 chr1 5019667 5026732 - 5016442 5 chr1 5019667 5028304 - 5011477 6 chr1 5019667 5028304 - 5016442 7 chr1 5019667 5029164 - 5011477 8 chr1 5019667 5029164 - 5016442 9 chr1 7249996 7256209 - 7241806 10 chr1 7249996 7256209 - 7246771 11 chr10 5019667 5023977 - 5016442 13 chr8 5019667 5022009 - 5016442 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 5019667 | 5028304 | a | 0 | ... | | chr1 | 5019667 | 5028304 | a | 0 | ... | | chr1 | 5019667 | 5029164 | a | 0 | ... | | chr1 | 5019667 | 5029164 | a | 0 | ... | | ... | ... | ... | ... | ... | ... | | chr1 | 7249996 | 7256209 | a | 0 | ... | | chr1 | 7249996 | 7256209 | a | 0 | ... | | chr1 | 5019667 | 5026732 | a | 0 | ... | | chr1 | 5019667 | 5026732 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 12 rows and 12 columns from 3 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 4 chr1 2096523 2102252 - 2088333 5 chr1 2096523 2102252 - 2093298 10 chr8 5019667 5022009 - 5016442 11 chr10 5019667 5023977 - 5016442 8 chr1 5019667 5026732 - 5011477 9 chr1 5019667 5026732 - 5016442 0 chr1 5019667 5028304 - 5011477 1 chr1 5019667 5028304 - 5016442 2 chr1 5019667 5029164 - 5011477 3 chr1 5019667 5029164 - 5016442 6 chr1 7249996 7256209 - 7241806 7 chr1 7249996 7256209 - 7246771 df2 Chromosome Start End Strand Distance 0 chr1 2096523 2102252 - 2088333 1 chr1 2096523 2102252 - 2093298 13 chr8 5019667 5022009 - 5016442 11 chr10 5019667 5023977 - 5016442 3 chr1 5019667 5026732 - 5011477 4 chr1 5019667 5026732 - 5016442 5 chr1 5019667 5028304 - 5011477 6 chr1 5019667 5028304 - 5016442 7 chr1 5019667 5029164 - 5011477 8 chr1 5019667 5029164 - 5016442 9 chr1 7249996 7256209 - 7241806 10 chr1 7249996 7256209 - 7246771 Actual Chromosome Start End Strand Distance 0 chr1 2096523 2102252 - 2088333 1 chr1 2096523 2102252 - 2093298 2 chr1 5019667 5026732 - 5011477 3 chr1 5019667 5026732 - 5016442 4 chr1 5019667 5028304 - 5011477 5 chr1 5019667 5028304 - 5016442 6 chr1 5019667 5029164 - 5011477 7 chr1 5019667 5029164 - 5016442 8 chr1 7249996 7256209 - 7241806 9 chr1 7249996 7256209 - 7246771 10 chr10 5019667 5023977 - 5016442 11 chr8 5019667 5022009 - 5016442 Expected Chromosome Start End Strand Distance 0 chr1 2096523 2102252 - 2088333 1 chr1 2096523 2102252 - 2093298 2 chr1 5019667 5026732 - 5011477 3 chr1 5019667 5026732 - 5016442 4 chr1 5019667 5028304 - 5011477 5 chr1 5019667 5028304 - 5016442 6 chr1 5019667 5029164 - 5011477 7 chr1 5019667 5029164 - 5016442 8 chr1 7249996 7256209 - 7241806 9 chr1 7249996 7256209 - 7246771 10 chr10 5019667 5023977 - 5016442 11 chr8 5019667 5022009 - 5016442 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=12, step=1) Expected index RangeIndex(start=0, stop=12, step=1) index equal [ True True True True True True True True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpbhtyzvbw/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpbhtyzvbw/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 2096523 2102252 - 2093298 1 chr1 2096523 2102252 - 2093706 3 chr1 5019667 5026732 - 5016442 4 chr1 5019667 5026732 - 5016850 5 chr1 5019667 5028304 - 5016442 6 chr1 5019667 5028304 - 5016850 7 chr1 5019667 5029164 - 5016442 8 chr1 5019667 5029164 - 5016850 9 chr1 7249996 7256209 - 7246771 10 chr1 7249996 7256209 - 7247179 11 chr10 5019667 5023977 - 5016442 13 chr8 5019667 5022009 - 5011477 14 chr8 5019667 5022009 - 5016442 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 5019667 | 5028304 | a | 0 | ... | | chr1 | 5019667 | 5028304 | a | 0 | ... | | chr1 | 5019667 | 5029164 | a | 0 | ... | | chr1 | 5019667 | 5029164 | a | 0 | ... | | ... | ... | ... | ... | ... | ... | | chr1 | 7249996 | 7256209 | a | 0 | ... | | chr1 | 7249996 | 7256209 | a | 0 | ... | | chr1 | 5019667 | 5026732 | a | 0 | ... | | chr1 | 5019667 | 5026732 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 13 rows and 12 columns from 3 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 4 chr1 2096523 2102252 - 2093298 5 chr1 2096523 2102252 - 2093706 10 chr8 5019667 5022009 - 5011477 11 chr8 5019667 5022009 - 5016442 12 chr10 5019667 5023977 - 5016442 8 chr1 5019667 5026732 - 5016442 9 chr1 5019667 5026732 - 5016850 0 chr1 5019667 5028304 - 5016442 1 chr1 5019667 5028304 - 5016850 2 chr1 5019667 5029164 - 5016442 3 chr1 5019667 5029164 - 5016850 6 chr1 7249996 7256209 - 7246771 7 chr1 7249996 7256209 - 7247179 df2 Chromosome Start End Strand Distance 0 chr1 2096523 2102252 - 2093298 1 chr1 2096523 2102252 - 2093706 13 chr8 5019667 5022009 - 5011477 14 chr8 5019667 5022009 - 5016442 11 chr10 5019667 5023977 - 5016442 3 chr1 5019667 5026732 - 5016442 4 chr1 5019667 5026732 - 5016850 5 chr1 5019667 5028304 - 5016442 6 chr1 5019667 5028304 - 5016850 7 chr1 5019667 5029164 - 5016442 8 chr1 5019667 5029164 - 5016850 9 chr1 7249996 7256209 - 7246771 10 chr1 7249996 7256209 - 7247179 Actual Chromosome Start End Strand Distance 0 chr1 2096523 2102252 - 2093298 1 chr1 2096523 2102252 - 2093706 2 chr1 5019667 5026732 - 5016442 3 chr1 5019667 5026732 - 5016850 4 chr1 5019667 5028304 - 5016442 5 chr1 5019667 5028304 - 5016850 6 chr1 5019667 5029164 - 5016442 7 chr1 5019667 5029164 - 5016850 8 chr1 7249996 7256209 - 7246771 9 chr1 7249996 7256209 - 7247179 10 chr10 5019667 5023977 - 5016442 11 chr8 5019667 5022009 - 5011477 12 chr8 5019667 5022009 - 5016442 Expected Chromosome Start End Strand Distance 0 chr1 2096523 2102252 - 2093298 1 chr1 2096523 2102252 - 2093706 2 chr1 5019667 5026732 - 5016442 3 chr1 5019667 5026732 - 5016850 4 chr1 5019667 5028304 - 5016442 5 chr1 5019667 5028304 - 5016850 6 chr1 5019667 5029164 - 5016442 7 chr1 5019667 5029164 - 5016850 8 chr1 7249996 7256209 - 7246771 9 chr1 7249996 7256209 - 7247179 10 chr10 5019667 5023977 - 5016442 11 chr8 5019667 5022009 - 5011477 12 chr8 5019667 5022009 - 5016442 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=13, step=1) Expected index RangeIndex(start=0, stop=13, step=1) index equal [ True True True True True True True True True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpkhszylor/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpkhszylor/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 2096523 2102252 - 2093298 1 chr1 2096523 2102252 - 2093706 3 chr1 5019667 5026732 - 5016442 4 chr1 5019667 5026732 - 5016850 5 chr1 5019667 5028304 - 5016442 6 chr1 5019667 5028304 - 5016850 7 chr1 5019667 5028771 - 5016442 8 chr1 5019667 5028771 - 5016850 9 chr1 5019667 5029164 - 5016442 10 chr1 5019667 5029164 - 5016850 11 chr1 7249996 7256209 - 7246771 12 chr1 7249996 7256209 - 7247179 13 chr10 5019667 5023977 - 5016442 14 chr8 5019667 5022009 - 5011477 15 chr8 5019667 5022009 - 5016442 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 5019667 | 5028771 | a | 0 | ... | | chr1 | 5019667 | 5028771 | a | 0 | ... | | chr1 | 5019667 | 5028304 | a | 0 | ... | | chr1 | 5019667 | 5028304 | a | 0 | ... | | ... | ... | ... | ... | ... | ... | | chr1 | 7249996 | 7256209 | a | 0 | ... | | chr1 | 7249996 | 7256209 | a | 0 | ... | | chr1 | 5019667 | 5026732 | a | 0 | ... | | chr1 | 5019667 | 5026732 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 15 rows and 12 columns from 3 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 6 chr1 2096523 2102252 - 2093298 7 chr1 2096523 2102252 - 2093706 12 chr8 5019667 5022009 - 5011477 13 chr8 5019667 5022009 - 5016442 14 chr10 5019667 5023977 - 5016442 10 chr1 5019667 5026732 - 5016442 11 chr1 5019667 5026732 - 5016850 2 chr1 5019667 5028304 - 5016442 3 chr1 5019667 5028304 - 5016850 0 chr1 5019667 5028771 - 5016442 1 chr1 5019667 5028771 - 5016850 4 chr1 5019667 5029164 - 5016442 5 chr1 5019667 5029164 - 5016850 8 chr1 7249996 7256209 - 7246771 9 chr1 7249996 7256209 - 7247179 df2 Chromosome Start End Strand Distance 0 chr1 2096523 2102252 - 2093298 1 chr1 2096523 2102252 - 2093706 14 chr8 5019667 5022009 - 5011477 15 chr8 5019667 5022009 - 5016442 13 chr10 5019667 5023977 - 5016442 3 chr1 5019667 5026732 - 5016442 4 chr1 5019667 5026732 - 5016850 5 chr1 5019667 5028304 - 5016442 6 chr1 5019667 5028304 - 5016850 7 chr1 5019667 5028771 - 5016442 8 chr1 5019667 5028771 - 5016850 9 chr1 5019667 5029164 - 5016442 10 chr1 5019667 5029164 - 5016850 11 chr1 7249996 7256209 - 7246771 12 chr1 7249996 7256209 - 7247179 Actual Chromosome Start End Strand Distance 0 chr1 2096523 2102252 - 2093298 1 chr1 2096523 2102252 - 2093706 2 chr1 5019667 5026732 - 5016442 3 chr1 5019667 5026732 - 5016850 4 chr1 5019667 5028304 - 5016442 5 chr1 5019667 5028304 - 5016850 6 chr1 5019667 5028771 - 5016442 7 chr1 5019667 5028771 - 5016850 8 chr1 5019667 5029164 - 5016442 9 chr1 5019667 5029164 - 5016850 10 chr1 7249996 7256209 - 7246771 11 chr1 7249996 7256209 - 7247179 12 chr10 5019667 5023977 - 5016442 13 chr8 5019667 5022009 - 5011477 14 chr8 5019667 5022009 - 5016442 Expected Chromosome Start End Strand Distance 0 chr1 2096523 2102252 - 2093298 1 chr1 2096523 2102252 - 2093706 2 chr1 5019667 5026732 - 5016442 3 chr1 5019667 5026732 - 5016850 4 chr1 5019667 5028304 - 5016442 5 chr1 5019667 5028304 - 5016850 6 chr1 5019667 5028771 - 5016442 7 chr1 5019667 5028771 - 5016850 8 chr1 5019667 5029164 - 5016442 9 chr1 5019667 5029164 - 5016850 10 chr1 7249996 7256209 - 7246771 11 chr1 7249996 7256209 - 7247179 12 chr10 5019667 5023977 - 5016442 13 chr8 5019667 5022009 - 5011477 14 chr8 5019667 5022009 - 5016442 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=15, step=1) Expected index RangeIndex(start=0, stop=15, step=1) index equal [ True True True True True True True True True True True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpuvq1t56y/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpuvq1t56y/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 2096523 2102252 - 2917416 1 chr1 5019667 5023607 + 2226390 2 chr1 5019667 5023607 + 2917416 7 chr1 7249996 7256209 - 2226390 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 5019667 | 5023607 | a | 0 | ... | | chr1 | 5019667 | 5023607 | a | 0 | ... | | chr1 | 2096523 | 2102252 | a | 0 | ... | | chr1 | 7249996 | 7256209 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 4 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 2 chr1 2096523 2102252 - 2917416 0 chr1 5019667 5023607 + 2226390 1 chr1 5019667 5023607 + 2917416 3 chr1 7249996 7256209 - 2226390 df2 Chromosome Start End Strand Distance 0 chr1 2096523 2102252 - 2917416 1 chr1 5019667 5023607 + 2226390 2 chr1 5019667 5023607 + 2917416 7 chr1 7249996 7256209 - 2226390 Actual Chromosome Start End Strand Distance 0 chr1 2096523 2102252 - 2917416 1 chr1 5019667 5023607 + 2226390 2 chr1 5019667 5023607 + 2917416 3 chr1 7249996 7256209 - 2226390 Expected Chromosome Start End Strand Distance 0 chr1 2096523 2102252 - 2917416 1 chr1 5019667 5023607 + 2226390 2 chr1 5019667 5023607 + 2917416 3 chr1 7249996 7256209 - 2226390 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=4, step=1) Expected index RangeIndex(start=0, stop=4, step=1) index equal [ True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpt9els5kh/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpt9els5kh/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpxv2s4j13/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpxv2s4j13/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpv0ma7rs1/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpv0ma7rs1/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpysm_o3ig/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpysm_o3ig/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 5744319 5747346 + 851652 1 chr1 5744319 5747346 + 2277645 2 chr1 9713554 9716581 - 531864 3 chr1 9713554 9716581 - 793612 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 5744319 | 5747346 | a | 0 | ... | | chr1 | 5744319 | 5747346 | a | 0 | ... | | chr1 | 9713554 | 9716581 | a | 0 | ... | | chr1 | 9713554 | 9716581 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 4 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 5744319 5747346 + 851652 1 chr1 5744319 5747346 + 2277645 2 chr1 9713554 9716581 - 531864 3 chr1 9713554 9716581 - 793612 df2 Chromosome Start End Strand Distance 0 chr1 5744319 5747346 + 851652 1 chr1 5744319 5747346 + 2277645 2 chr1 9713554 9716581 - 531864 3 chr1 9713554 9716581 - 793612 Actual Chromosome Start End Strand Distance 0 chr1 5744319 5747346 + 851652 1 chr1 5744319 5747346 + 2277645 2 chr1 9713554 9716581 - 531864 3 chr1 9713554 9716581 - 793612 Expected Chromosome Start End Strand Distance 0 chr1 5744319 5747346 + 851652 1 chr1 5744319 5747346 + 2277645 2 chr1 9713554 9716581 - 531864 3 chr1 9713554 9716581 - 793612 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=4, step=1) Expected index RangeIndex(start=0, stop=4, step=1) index equal [ True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpyuf1_sov/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpyuf1_sov/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 5744319 5747346 + 851652 1 chr1 5744319 5747346 + 2277645 2 chr1 9713554 9716581 - 531864 3 chr1 9713554 9716581 - 793612 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 5744319 | 5747346 | a | 0 | ... | | chr1 | 5744319 | 5747346 | a | 0 | ... | | chr1 | 9713554 | 9716581 | a | 0 | ... | | chr1 | 9713554 | 9716581 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 4 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 5744319 5747346 + 851652 1 chr1 5744319 5747346 + 2277645 2 chr1 9713554 9716581 - 531864 3 chr1 9713554 9716581 - 793612 df2 Chromosome Start End Strand Distance 0 chr1 5744319 5747346 + 851652 1 chr1 5744319 5747346 + 2277645 2 chr1 9713554 9716581 - 531864 3 chr1 9713554 9716581 - 793612 Actual Chromosome Start End Strand Distance 0 chr1 5744319 5747346 + 851652 1 chr1 5744319 5747346 + 2277645 2 chr1 9713554 9716581 - 531864 3 chr1 9713554 9716581 - 793612 Expected Chromosome Start End Strand Distance 0 chr1 5744319 5747346 + 851652 1 chr1 5744319 5747346 + 2277645 2 chr1 9713554 9716581 - 531864 3 chr1 9713554 9716581 - 793612 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=4, step=1) Expected index RangeIndex(start=0, stop=4, step=1) index equal [ True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpjhykb5sd/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpjhykb5sd/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 5744319 5747346 + 3966209 1 chr1 9713554 9716581 - 3966209 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 5744319 | 5747346 | a | 0 | ... | | chr1 | 9713554 | 9716581 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 5744319 5747346 + 3966209 1 chr1 9713554 9716581 - 3966209 df2 Chromosome Start End Strand Distance 0 chr1 5744319 5747346 + 3966209 1 chr1 9713554 9716581 - 3966209 Actual Chromosome Start End Strand Distance 0 chr1 5744319 5747346 + 3966209 1 chr1 9713554 9716581 - 3966209 Expected Chromosome Start End Strand Distance 0 chr1 5744319 5747346 + 3966209 1 chr1 9713554 9716581 - 3966209 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=2, step=1) Expected index RangeIndex(start=0, stop=2, step=1) index equal [ True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpirqskpie/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpirqskpie/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpbe4obeds/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpbe4obeds/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp66ruti56/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp66ruti56/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpnu42rttp/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpnu42rttp/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp2ycl6bcw/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp2ycl6bcw/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpqxglyooa/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpqxglyooa/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmposbo6s26/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmposbo6s26/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpgjp7580c/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpgjp7580c/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpc1jq2efn/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpc1jq2efn/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmphrvfpbs5/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmphrvfpbs5/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp7zo9o30s/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp7zo9o30s/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 1 chr1 5179953 5180534 + 2556501 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 5179953 | 5180534 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 5179953 5180534 + 2556501 df2 Chromosome Start End Strand Distance 1 chr1 5179953 5180534 + 2556501 Actual Chromosome Start End Strand Distance 0 chr1 5179953 5180534 + 2556501 Expected Chromosome Start End Strand Distance 0 chr1 5179953 5180534 + 2556501 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=1, step=1) Expected index RangeIndex(start=0, stop=1, step=1) index equal [ True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmphs2zta9u/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmphs2zta9u/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 1009526 1013359 + 1610094 1 chr1 5179953 5180534 + 2556501 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 1009526 | 1013359 | a | 0 | ... | | chr1 | 5179953 | 5180534 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 1009526 1013359 + 1610094 1 chr1 5179953 5180534 + 2556501 df2 Chromosome Start End Strand Distance 0 chr1 1009526 1013359 + 1610094 1 chr1 5179953 5180534 + 2556501 Actual Chromosome Start End Strand Distance 0 chr1 1009526 1013359 + 1610094 1 chr1 5179953 5180534 + 2556501 Expected Chromosome Start End Strand Distance 0 chr1 1009526 1013359 + 1610094 1 chr1 5179953 5180534 + 2556501 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=2, step=1) Expected index RangeIndex(start=0, stop=2, step=1) index equal [ True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp6g8or21q/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp6g8or21q/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 3851 7684 + 2615769 1 chr1 5179953 5180534 + 2556501 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 3851 | 7684 | a | 0 | ... | | chr1 | 5179953 | 5180534 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 3851 7684 + 2615769 1 chr1 5179953 5180534 + 2556501 df2 Chromosome Start End Strand Distance 0 chr1 3851 7684 + 2615769 1 chr1 5179953 5180534 + 2556501 Actual Chromosome Start End Strand Distance 0 chr1 3851 7684 + 2615769 1 chr1 5179953 5180534 + 2556501 Expected Chromosome Start End Strand Distance 0 chr1 3851 7684 + 2615769 1 chr1 5179953 5180534 + 2556501 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=2, step=1) Expected index RangeIndex(start=0, stop=2, step=1) index equal [ True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmplessh3cj/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmplessh3cj/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 3851 7684 + 2615769 1 chr1 5179953 5180534 + 2556501 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 3851 | 7684 | a | 0 | ... | | chr1 | 5179953 | 5180534 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 3851 7684 + 2615769 1 chr1 5179953 5180534 + 2556501 df2 Chromosome Start End Strand Distance 0 chr1 3851 7684 + 2615769 1 chr1 5179953 5180534 + 2556501 Actual Chromosome Start End Strand Distance 0 chr1 3851 7684 + 2615769 1 chr1 5179953 5180534 + 2556501 Expected Chromosome Start End Strand Distance 0 chr1 3851 7684 + 2615769 1 chr1 5179953 5180534 + 2556501 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=2, step=1) Expected index RangeIndex(start=0, stop=2, step=1) index equal [ True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpablwmorg/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpablwmorg/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpa5bgh5hy/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpa5bgh5hy/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpclv6wwgl/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpclv6wwgl/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpq41y6ji2/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpq41y6ji2/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpndii4x9o/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpndii4x9o/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmphcm65gqd/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmphcm65gqd/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpb356w51y/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpb356w51y/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpc4502t5k/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpc4502t5k/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr2 4935978 4944544 - 1222362 1 chr2 4935978 4944544 - 4935976 2 chr2 5374562 5383128 - 438584 3 chr2 5374562 5383128 - 783778 4 chr2 5826484 5834754 - 332152 5 chr2 5826484 5834754 - 890506 6 chr2 6166905 6175471 - 1230927 7 chr2 6166905 6175471 - 6166903 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr2 | 5374562 | 5383128 | a | 0 | ... | | chr2 | 5374562 | 5383128 | a | 0 | ... | | chr2 | 5826484 | 5834754 | a | 0 | ... | | chr2 | 5826484 | 5834754 | a | 0 | ... | | chr2 | 6166905 | 6175471 | a | 0 | ... | | chr2 | 6166905 | 6175471 | a | 0 | ... | | chr2 | 4935978 | 4944544 | a | 0 | ... | | chr2 | 4935978 | 4944544 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 8 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 6 chr2 4935978 4944544 - 1222362 7 chr2 4935978 4944544 - 4935976 0 chr2 5374562 5383128 - 438584 1 chr2 5374562 5383128 - 783778 2 chr2 5826484 5834754 - 332152 3 chr2 5826484 5834754 - 890506 4 chr2 6166905 6175471 - 1230927 5 chr2 6166905 6175471 - 6166903 df2 Chromosome Start End Strand Distance 0 chr2 4935978 4944544 - 1222362 1 chr2 4935978 4944544 - 4935976 2 chr2 5374562 5383128 - 438584 3 chr2 5374562 5383128 - 783778 4 chr2 5826484 5834754 - 332152 5 chr2 5826484 5834754 - 890506 6 chr2 6166905 6175471 - 1230927 7 chr2 6166905 6175471 - 6166903 Actual Chromosome Start End Strand Distance 0 chr2 4935978 4944544 - 1222362 1 chr2 4935978 4944544 - 4935976 2 chr2 5374562 5383128 - 438584 3 chr2 5374562 5383128 - 783778 4 chr2 5826484 5834754 - 332152 5 chr2 5826484 5834754 - 890506 6 chr2 6166905 6175471 - 1230927 7 chr2 6166905 6175471 - 6166903 Expected Chromosome Start End Strand Distance 0 chr2 4935978 4944544 - 1222362 1 chr2 4935978 4944544 - 4935976 2 chr2 5374562 5383128 - 438584 3 chr2 5374562 5383128 - 783778 4 chr2 5826484 5834754 - 332152 5 chr2 5826484 5834754 - 890506 6 chr2 6166905 6175471 - 1230927 7 chr2 6166905 6175471 - 6166903 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=8, step=1) Expected index RangeIndex(start=0, stop=8, step=1) index equal [ True True True True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp85k1ezt1/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp85k1ezt1/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 4859534 4869534 - 4149484 1 chr1 8928222 8937104 - 81914 2 chr16 7403791 7413791 - 6125006 3 chr3 1 10001 - 5843165 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 4859534 | 4869534 | a | 0 | ... | | chr1 | 8928222 | 8937104 | a | 0 | ... | | chr3 | 1 | 10001 | a | 0 | ... | | chr16 | 7403791 | 7413791 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 4 rows and 12 columns from 3 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 2 chr3 1 10001 - 5843165 0 chr1 4859534 4869534 - 4149484 3 chr16 7403791 7413791 - 6125006 1 chr1 8928222 8937104 - 81914 df2 Chromosome Start End Strand Distance 3 chr3 1 10001 - 5843165 0 chr1 4859534 4869534 - 4149484 2 chr16 7403791 7413791 - 6125006 1 chr1 8928222 8937104 - 81914 Actual Chromosome Start End Strand Distance 0 chr1 4859534 4869534 - 4149484 1 chr1 8928222 8937104 - 81914 2 chr16 7403791 7413791 - 6125006 3 chr3 1 10001 - 5843165 Expected Chromosome Start End Strand Distance 0 chr1 4859534 4869534 - 4149484 1 chr1 8928222 8937104 - 81914 2 chr16 7403791 7413791 - 6125006 3 chr3 1 10001 - 5843165 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=4, step=1) Expected index RangeIndex(start=0, stop=4, step=1) index equal [ True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp49gnod5i/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp49gnod5i/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 4859534 4859535 + 4859533 1 chr1 4859534 4859535 + 4859533 2 chr1 4859534 4859535 + 4859533 3 chr1 4859534 4859535 + 4859533 4 chr1 4859534 4859535 + 4859533 5 chr1 4859534 4859535 + 4859533 6 chr1 4859534 4859535 + 4859533 7 chr1 4859534 4859535 + 4859533 8 chr1 4859534 4861642 + 4859533 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 4859534 | 4859535 | a | 0 | ... | | chr1 | 4859534 | 4861642 | a | 0 | ... | | chr1 | 4859534 | 4859535 | a | 0 | ... | | chr1 | 4859534 | 4859535 | a | 0 | ... | | ... | ... | ... | ... | ... | ... | | chr1 | 4859534 | 4859535 | a | 0 | ... | | chr1 | 4859534 | 4859535 | a | 0 | ... | | chr1 | 4859534 | 4859535 | a | 0 | ... | | chr1 | 4859534 | 4859535 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 9 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 4859534 4859535 + 4859533 2 chr1 4859534 4859535 + 4859533 3 chr1 4859534 4859535 + 4859533 4 chr1 4859534 4859535 + 4859533 5 chr1 4859534 4859535 + 4859533 6 chr1 4859534 4859535 + 4859533 7 chr1 4859534 4859535 + 4859533 8 chr1 4859534 4859535 + 4859533 1 chr1 4859534 4861642 + 4859533 df2 Chromosome Start End Strand Distance 0 chr1 4859534 4859535 + 4859533 1 chr1 4859534 4859535 + 4859533 2 chr1 4859534 4859535 + 4859533 3 chr1 4859534 4859535 + 4859533 4 chr1 4859534 4859535 + 4859533 5 chr1 4859534 4859535 + 4859533 6 chr1 4859534 4859535 + 4859533 7 chr1 4859534 4859535 + 4859533 8 chr1 4859534 4861642 + 4859533 Actual Chromosome Start End Strand Distance 0 chr1 4859534 4859535 + 4859533 1 chr1 4859534 4859535 + 4859533 2 chr1 4859534 4859535 + 4859533 3 chr1 4859534 4859535 + 4859533 4 chr1 4859534 4859535 + 4859533 5 chr1 4859534 4859535 + 4859533 6 chr1 4859534 4859535 + 4859533 7 chr1 4859534 4859535 + 4859533 8 chr1 4859534 4861642 + 4859533 Expected Chromosome Start End Strand Distance 0 chr1 4859534 4859535 + 4859533 1 chr1 4859534 4859535 + 4859533 2 chr1 4859534 4859535 + 4859533 3 chr1 4859534 4859535 + 4859533 4 chr1 4859534 4859535 + 4859533 5 chr1 4859534 4859535 + 4859533 6 chr1 4859534 4859535 + 4859533 7 chr1 4859534 4859535 + 4859533 8 chr1 4859534 4861642 + 4859533 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=9, step=1) Expected index RangeIndex(start=0, stop=9, step=1) index equal [ True True True True True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp81ki6492/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp81ki6492/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 4859534 4859535 + 4859533 1 chr1 4859534 4859535 + 4859533 2 chr1 4859534 4859535 + 4859533 3 chr1 4859534 4859535 + 4859533 4 chr1 4859534 4859535 + 4859533 5 chr1 4859534 4859535 + 4859533 6 chr1 4859534 4859535 + 4859533 7 chr1 4859534 4859535 + 4859533 8 chr1 4859534 4861642 + 4859533 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 4859534 | 4859535 | a | 0 | ... | | chr1 | 4859534 | 4861642 | a | 0 | ... | | chr1 | 4859534 | 4859535 | a | 0 | ... | | chr1 | 4859534 | 4859535 | a | 0 | ... | | ... | ... | ... | ... | ... | ... | | chr1 | 4859534 | 4859535 | a | 0 | ... | | chr1 | 4859534 | 4859535 | a | 0 | ... | | chr1 | 4859534 | 4859535 | a | 0 | ... | | chr1 | 4859534 | 4859535 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 9 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 4859534 4859535 + 4859533 2 chr1 4859534 4859535 + 4859533 3 chr1 4859534 4859535 + 4859533 4 chr1 4859534 4859535 + 4859533 5 chr1 4859534 4859535 + 4859533 6 chr1 4859534 4859535 + 4859533 7 chr1 4859534 4859535 + 4859533 8 chr1 4859534 4859535 + 4859533 1 chr1 4859534 4861642 + 4859533 df2 Chromosome Start End Strand Distance 0 chr1 4859534 4859535 + 4859533 1 chr1 4859534 4859535 + 4859533 2 chr1 4859534 4859535 + 4859533 3 chr1 4859534 4859535 + 4859533 4 chr1 4859534 4859535 + 4859533 5 chr1 4859534 4859535 + 4859533 6 chr1 4859534 4859535 + 4859533 7 chr1 4859534 4859535 + 4859533 8 chr1 4859534 4861642 + 4859533 Actual Chromosome Start End Strand Distance 0 chr1 4859534 4859535 + 4859533 1 chr1 4859534 4859535 + 4859533 2 chr1 4859534 4859535 + 4859533 3 chr1 4859534 4859535 + 4859533 4 chr1 4859534 4859535 + 4859533 5 chr1 4859534 4859535 + 4859533 6 chr1 4859534 4859535 + 4859533 7 chr1 4859534 4859535 + 4859533 8 chr1 4859534 4861642 + 4859533 Expected Chromosome Start End Strand Distance 0 chr1 4859534 4859535 + 4859533 1 chr1 4859534 4859535 + 4859533 2 chr1 4859534 4859535 + 4859533 3 chr1 4859534 4859535 + 4859533 4 chr1 4859534 4859535 + 4859533 5 chr1 4859534 4859535 + 4859533 6 chr1 4859534 4859535 + 4859533 7 chr1 4859534 4859535 + 4859533 8 chr1 4859534 4861642 + 4859533 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=9, step=1) Expected index RangeIndex(start=0, stop=9, step=1) index equal [ True True True True True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpu2x3qayq/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpu2x3qayq/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 4859534 4859535 + 4859533 1 chr1 4859534 4859535 + 4859533 2 chr1 4859534 4859535 + 4859533 3 chr1 4859534 4859535 + 4859533 4 chr1 4859534 4859535 + 4859533 5 chr1 4859534 4859535 + 4859533 6 chr1 4859534 4859535 + 4859533 7 chr1 4859534 4859535 + 4859533 8 chr1 4859534 4861642 + 4859533 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 4859534 | 4859535 | a | 0 | ... | | chr1 | 4859534 | 4861642 | a | 0 | ... | | chr1 | 4859534 | 4859535 | a | 0 | ... | | chr1 | 4859534 | 4859535 | a | 0 | ... | | ... | ... | ... | ... | ... | ... | | chr1 | 4859534 | 4859535 | a | 0 | ... | | chr1 | 4859534 | 4859535 | a | 0 | ... | | chr1 | 4859534 | 4859535 | a | 0 | ... | | chr1 | 4859534 | 4859535 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 9 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 4859534 4859535 + 4859533 2 chr1 4859534 4859535 + 4859533 3 chr1 4859534 4859535 + 4859533 4 chr1 4859534 4859535 + 4859533 5 chr1 4859534 4859535 + 4859533 6 chr1 4859534 4859535 + 4859533 7 chr1 4859534 4859535 + 4859533 8 chr1 4859534 4859535 + 4859533 1 chr1 4859534 4861642 + 4859533 df2 Chromosome Start End Strand Distance 0 chr1 4859534 4859535 + 4859533 1 chr1 4859534 4859535 + 4859533 2 chr1 4859534 4859535 + 4859533 3 chr1 4859534 4859535 + 4859533 4 chr1 4859534 4859535 + 4859533 5 chr1 4859534 4859535 + 4859533 6 chr1 4859534 4859535 + 4859533 7 chr1 4859534 4859535 + 4859533 8 chr1 4859534 4861642 + 4859533 Actual Chromosome Start End Strand Distance 0 chr1 4859534 4859535 + 4859533 1 chr1 4859534 4859535 + 4859533 2 chr1 4859534 4859535 + 4859533 3 chr1 4859534 4859535 + 4859533 4 chr1 4859534 4859535 + 4859533 5 chr1 4859534 4859535 + 4859533 6 chr1 4859534 4859535 + 4859533 7 chr1 4859534 4859535 + 4859533 8 chr1 4859534 4861642 + 4859533 Expected Chromosome Start End Strand Distance 0 chr1 4859534 4859535 + 4859533 1 chr1 4859534 4859535 + 4859533 2 chr1 4859534 4859535 + 4859533 3 chr1 4859534 4859535 + 4859533 4 chr1 4859534 4859535 + 4859533 5 chr1 4859534 4859535 + 4859533 6 chr1 4859534 4859535 + 4859533 7 chr1 4859534 4859535 + 4859533 8 chr1 4859534 4861642 + 4859533 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=9, step=1) Expected index RangeIndex(start=0, stop=9, step=1) index equal [ True True True True True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpsebfcndi/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpsebfcndi/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 4859534 4859535 + 4859533 1 chr1 4859534 4859535 + 4859533 2 chr1 4859534 4859535 + 4859533 3 chr1 4859534 4859535 + 4859533 4 chr1 4859534 4859535 + 4859533 5 chr1 4859534 4859535 + 4859533 6 chr1 4859534 4859535 + 4859533 7 chr1 4859534 4859535 + 4859533 8 chr1 4859534 4861642 + 4859533 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 4859534 | 4859535 | a | 0 | ... | | chr1 | 4859534 | 4861642 | a | 0 | ... | | chr1 | 4859534 | 4859535 | a | 0 | ... | | chr1 | 4859534 | 4859535 | a | 0 | ... | | ... | ... | ... | ... | ... | ... | | chr1 | 4859534 | 4859535 | a | 0 | ... | | chr1 | 4859534 | 4859535 | a | 0 | ... | | chr1 | 4859534 | 4859535 | a | 0 | ... | | chr1 | 4859534 | 4859535 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 9 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 4859534 4859535 + 4859533 2 chr1 4859534 4859535 + 4859533 3 chr1 4859534 4859535 + 4859533 4 chr1 4859534 4859535 + 4859533 5 chr1 4859534 4859535 + 4859533 6 chr1 4859534 4859535 + 4859533 7 chr1 4859534 4859535 + 4859533 8 chr1 4859534 4859535 + 4859533 1 chr1 4859534 4861642 + 4859533 df2 Chromosome Start End Strand Distance 0 chr1 4859534 4859535 + 4859533 1 chr1 4859534 4859535 + 4859533 2 chr1 4859534 4859535 + 4859533 3 chr1 4859534 4859535 + 4859533 4 chr1 4859534 4859535 + 4859533 5 chr1 4859534 4859535 + 4859533 6 chr1 4859534 4859535 + 4859533 7 chr1 4859534 4859535 + 4859533 8 chr1 4859534 4861642 + 4859533 Actual Chromosome Start End Strand Distance 0 chr1 4859534 4859535 + 4859533 1 chr1 4859534 4859535 + 4859533 2 chr1 4859534 4859535 + 4859533 3 chr1 4859534 4859535 + 4859533 4 chr1 4859534 4859535 + 4859533 5 chr1 4859534 4859535 + 4859533 6 chr1 4859534 4859535 + 4859533 7 chr1 4859534 4859535 + 4859533 8 chr1 4859534 4861642 + 4859533 Expected Chromosome Start End Strand Distance 0 chr1 4859534 4859535 + 4859533 1 chr1 4859534 4859535 + 4859533 2 chr1 4859534 4859535 + 4859533 3 chr1 4859534 4859535 + 4859533 4 chr1 4859534 4859535 + 4859533 5 chr1 4859534 4859535 + 4859533 6 chr1 4859534 4859535 + 4859533 7 chr1 4859534 4859535 + 4859533 8 chr1 4859534 4861642 + 4859533 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=9, step=1) Expected index RangeIndex(start=0, stop=9, step=1) index equal [ True True True True True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpnq85czhy/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpnq85czhy/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 4859534 4859535 + 4859533 1 chr1 4859534 4859535 + 4859533 2 chr1 4859534 4859535 + 4859533 3 chr1 4859534 4859535 + 4859533 4 chr1 4859534 4859535 + 4859533 5 chr1 4859534 4859535 + 4859533 6 chr1 4859534 4859535 + 4859533 7 chr1 4859534 4859535 + 4859533 8 chr1 4859534 4861642 + 4859533 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 4859534 | 4859535 | a | 0 | ... | | chr1 | 4859534 | 4861642 | a | 0 | ... | | chr1 | 4859534 | 4859535 | a | 0 | ... | | chr1 | 4859534 | 4859535 | a | 0 | ... | | ... | ... | ... | ... | ... | ... | | chr1 | 4859534 | 4859535 | a | 0 | ... | | chr1 | 4859534 | 4859535 | a | 0 | ... | | chr1 | 4859534 | 4859535 | a | 0 | ... | | chr1 | 4859534 | 4859535 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 9 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 4859534 4859535 + 4859533 2 chr1 4859534 4859535 + 4859533 3 chr1 4859534 4859535 + 4859533 4 chr1 4859534 4859535 + 4859533 5 chr1 4859534 4859535 + 4859533 6 chr1 4859534 4859535 + 4859533 7 chr1 4859534 4859535 + 4859533 8 chr1 4859534 4859535 + 4859533 1 chr1 4859534 4861642 + 4859533 df2 Chromosome Start End Strand Distance 0 chr1 4859534 4859535 + 4859533 1 chr1 4859534 4859535 + 4859533 2 chr1 4859534 4859535 + 4859533 3 chr1 4859534 4859535 + 4859533 4 chr1 4859534 4859535 + 4859533 5 chr1 4859534 4859535 + 4859533 6 chr1 4859534 4859535 + 4859533 7 chr1 4859534 4859535 + 4859533 8 chr1 4859534 4861642 + 4859533 Actual Chromosome Start End Strand Distance 0 chr1 4859534 4859535 + 4859533 1 chr1 4859534 4859535 + 4859533 2 chr1 4859534 4859535 + 4859533 3 chr1 4859534 4859535 + 4859533 4 chr1 4859534 4859535 + 4859533 5 chr1 4859534 4859535 + 4859533 6 chr1 4859534 4859535 + 4859533 7 chr1 4859534 4859535 + 4859533 8 chr1 4859534 4861642 + 4859533 Expected Chromosome Start End Strand Distance 0 chr1 4859534 4859535 + 4859533 1 chr1 4859534 4859535 + 4859533 2 chr1 4859534 4859535 + 4859533 3 chr1 4859534 4859535 + 4859533 4 chr1 4859534 4859535 + 4859533 5 chr1 4859534 4859535 + 4859533 6 chr1 4859534 4859535 + 4859533 7 chr1 4859534 4859535 + 4859533 8 chr1 4859534 4861642 + 4859533 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=9, step=1) Expected index RangeIndex(start=0, stop=9, step=1) index equal [ True True True True True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpl5we61uu/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpl5we61uu/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 8 chr1 4859534 4861642 + 4859533 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 4859534 | 4861642 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 4859534 4861642 + 4859533 df2 Chromosome Start End Strand Distance 8 chr1 4859534 4861642 + 4859533 Actual Chromosome Start End Strand Distance 0 chr1 4859534 4861642 + 4859533 Expected Chromosome Start End Strand Distance 0 chr1 4859534 4861642 + 4859533 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=1, step=1) Expected index RangeIndex(start=0, stop=1, step=1) index equal [ True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp359h_7ta/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp359h_7ta/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 4251845 4257067 + 3509527 1 chr1 9839387 9839623 - 839173 2 chr1 9839387 9839623 - 9105970 3 chr1 9839387 9839686 + 2063289 4 chr1 9839387 9841687 - 839173 5 chr1 9839387 9841687 - 9105970 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 9839387 | 9839686 | a | 0 | ... | | chr1 | 4251845 | 4257067 | a | 0 | ... | | chr1 | 9839387 | 9841687 | a | 0 | ... | | chr1 | 9839387 | 9841687 | a | 0 | ... | | chr1 | 9839387 | 9839623 | a | 0 | ... | | chr1 | 9839387 | 9839623 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 6 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 1 chr1 4251845 4257067 + 3509527 4 chr1 9839387 9839623 - 839173 5 chr1 9839387 9839623 - 9105970 0 chr1 9839387 9839686 + 2063289 2 chr1 9839387 9841687 - 839173 3 chr1 9839387 9841687 - 9105970 df2 Chromosome Start End Strand Distance 0 chr1 4251845 4257067 + 3509527 1 chr1 9839387 9839623 - 839173 2 chr1 9839387 9839623 - 9105970 3 chr1 9839387 9839686 + 2063289 4 chr1 9839387 9841687 - 839173 5 chr1 9839387 9841687 - 9105970 Actual Chromosome Start End Strand Distance 0 chr1 4251845 4257067 + 3509527 1 chr1 9839387 9839623 - 839173 2 chr1 9839387 9839623 - 9105970 3 chr1 9839387 9839686 + 2063289 4 chr1 9839387 9841687 - 839173 5 chr1 9839387 9841687 - 9105970 Expected Chromosome Start End Strand Distance 0 chr1 4251845 4257067 + 3509527 1 chr1 9839387 9839623 - 839173 2 chr1 9839387 9839623 - 9105970 3 chr1 9839387 9839686 + 2063289 4 chr1 9839387 9841687 - 839173 5 chr1 9839387 9841687 - 9105970 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=6, step=1) Expected index RangeIndex(start=0, stop=6, step=1) index equal [ True True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpbxfbu0on/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpbxfbu0on/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 4251845 4257067 + 3509527 1 chr1 9839387 9839623 - 9839386 2 chr1 9839387 9839686 + 2070411 3 chr1 9839387 9839686 + 2072794 4 chr1 9839387 9841687 - 9839386 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 9839387 | 9839686 | a | 0 | ... | | chr1 | 9839387 | 9839686 | a | 0 | ... | | chr1 | 4251845 | 4257067 | a | 0 | ... | | chr1 | 9839387 | 9841687 | a | 0 | ... | | chr1 | 9839387 | 9839623 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 5 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 2 chr1 4251845 4257067 + 3509527 4 chr1 9839387 9839623 - 9839386 0 chr1 9839387 9839686 + 2070411 1 chr1 9839387 9839686 + 2072794 3 chr1 9839387 9841687 - 9839386 df2 Chromosome Start End Strand Distance 0 chr1 4251845 4257067 + 3509527 1 chr1 9839387 9839623 - 9839386 2 chr1 9839387 9839686 + 2070411 3 chr1 9839387 9839686 + 2072794 4 chr1 9839387 9841687 - 9839386 Actual Chromosome Start End Strand Distance 0 chr1 4251845 4257067 + 3509527 1 chr1 9839387 9839623 - 9839386 2 chr1 9839387 9839686 + 2070411 3 chr1 9839387 9839686 + 2072794 4 chr1 9839387 9841687 - 9839386 Expected Chromosome Start End Strand Distance 0 chr1 4251845 4257067 + 3509527 1 chr1 9839387 9839623 - 9839386 2 chr1 9839387 9839686 + 2070411 3 chr1 9839387 9839686 + 2072794 4 chr1 9839387 9841687 - 9839386 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=5, step=1) Expected index RangeIndex(start=0, stop=5, step=1) index equal [ True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp1xuboaq1/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp1xuboaq1/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 2 chr1 9839387 9839686 + 9839386 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 9839387 | 9839686 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 9839387 9839686 + 9839386 df2 Chromosome Start End Strand Distance 2 chr1 9839387 9839686 + 9839386 Actual Chromosome Start End Strand Distance 0 chr1 9839387 9839686 + 9839386 Expected Chromosome Start End Strand Distance 0 chr1 9839387 9839686 + 9839386 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=1, step=1) Expected index RangeIndex(start=0, stop=1, step=1) index equal [ True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp4luq3mzh/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp4luq3mzh/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpuibsny79/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpuibsny79/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpaacwrtbu/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpaacwrtbu/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpbkhiuo7_/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpbkhiuo7_/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp1fm5v0bn/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp1fm5v0bn/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 6999341 6999499 - 1369690 1 chr1 6999341 6999499 - 1616522 2 chr1 8028832 8034080 - 581941 3 chr1 8028832 8034080 - 1383442 4 chr1 8028832 8038479 + 911135 5 chr1 8028832 8038479 + 1228395 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 8028832 | 8038479 | a | 0 | ... | | chr1 | 8028832 | 8038479 | a | 0 | ... | | chr1 | 6999341 | 6999499 | a | 0 | ... | | chr1 | 6999341 | 6999499 | a | 0 | ... | | chr1 | 8028832 | 8034080 | a | 0 | ... | | chr1 | 8028832 | 8034080 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 6 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 2 chr1 6999341 6999499 - 1369690 3 chr1 6999341 6999499 - 1616522 4 chr1 8028832 8034080 - 581941 5 chr1 8028832 8034080 - 1383442 0 chr1 8028832 8038479 + 911135 1 chr1 8028832 8038479 + 1228395 df2 Chromosome Start End Strand Distance 0 chr1 6999341 6999499 - 1369690 1 chr1 6999341 6999499 - 1616522 2 chr1 8028832 8034080 - 581941 3 chr1 8028832 8034080 - 1383442 4 chr1 8028832 8038479 + 911135 5 chr1 8028832 8038479 + 1228395 Actual Chromosome Start End Strand Distance 0 chr1 6999341 6999499 - 1369690 1 chr1 6999341 6999499 - 1616522 2 chr1 8028832 8034080 - 581941 3 chr1 8028832 8034080 - 1383442 4 chr1 8028832 8038479 + 911135 5 chr1 8028832 8038479 + 1228395 Expected Chromosome Start End Strand Distance 0 chr1 6999341 6999499 - 1369690 1 chr1 6999341 6999499 - 1616522 2 chr1 8028832 8034080 - 581941 3 chr1 8028832 8034080 - 1383442 4 chr1 8028832 8038479 + 911135 5 chr1 8028832 8038479 + 1228395 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=6, step=1) Expected index RangeIndex(start=0, stop=6, step=1) index equal [ True True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpahdk3m9h/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpahdk3m9h/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 6999341 6999499 - 6993771 1 chr1 6999341 6999499 - 6999326 2 chr1 8028832 8034080 - 8023262 3 chr1 8028832 8034080 - 8028817 4 chr1 8028832 8038479 + 8023262 5 chr1 8028832 8038479 + 8028831 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 8028832 | 8038479 | a | 0 | ... | | chr1 | 8028832 | 8038479 | a | 0 | ... | | chr1 | 6999341 | 6999499 | a | 0 | ... | | chr1 | 6999341 | 6999499 | a | 0 | ... | | chr1 | 8028832 | 8034080 | a | 0 | ... | | chr1 | 8028832 | 8034080 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 6 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 2 chr1 6999341 6999499 - 6993771 3 chr1 6999341 6999499 - 6999326 4 chr1 8028832 8034080 - 8023262 5 chr1 8028832 8034080 - 8028817 0 chr1 8028832 8038479 + 8023262 1 chr1 8028832 8038479 + 8028831 df2 Chromosome Start End Strand Distance 0 chr1 6999341 6999499 - 6993771 1 chr1 6999341 6999499 - 6999326 2 chr1 8028832 8034080 - 8023262 3 chr1 8028832 8034080 - 8028817 4 chr1 8028832 8038479 + 8023262 5 chr1 8028832 8038479 + 8028831 Actual Chromosome Start End Strand Distance 0 chr1 6999341 6999499 - 6993771 1 chr1 6999341 6999499 - 6999326 2 chr1 8028832 8034080 - 8023262 3 chr1 8028832 8034080 - 8028817 4 chr1 8028832 8038479 + 8023262 5 chr1 8028832 8038479 + 8028831 Expected Chromosome Start End Strand Distance 0 chr1 6999341 6999499 - 6993771 1 chr1 6999341 6999499 - 6999326 2 chr1 8028832 8034080 - 8023262 3 chr1 8028832 8034080 - 8028817 4 chr1 8028832 8038479 + 8023262 5 chr1 8028832 8038479 + 8028831 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=6, step=1) Expected index RangeIndex(start=0, stop=6, step=1) index equal [ True True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmplywiofxw/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmplywiofxw/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 6999341 6999499 - 1029334 2 chr1 8028832 8038479 + 1029334 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 8028832 | 8038479 | a | 0 | ... | | chr1 | 6999341 | 6999499 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 1 chr1 6999341 6999499 - 1029334 0 chr1 8028832 8038479 + 1029334 df2 Chromosome Start End Strand Distance 0 chr1 6999341 6999499 - 1029334 2 chr1 8028832 8038479 + 1029334 Actual Chromosome Start End Strand Distance 0 chr1 6999341 6999499 - 1029334 1 chr1 8028832 8038479 + 1029334 Expected Chromosome Start End Strand Distance 0 chr1 6999341 6999499 - 1029334 1 chr1 8028832 8038479 + 1029334 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=2, step=1) Expected index RangeIndex(start=0, stop=2, step=1) index equal [ True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpx867uhyw/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpx867uhyw/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpqez9p9pz/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpqez9p9pz/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp6fzty6tv/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp6fzty6tv/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpq6u9wfo3/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpq6u9wfo3/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp84wjlne5/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp84wjlne5/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp76qb0y4y/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp76qb0y4y/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 699032 708205 + 7502255 1 chr1 6496325 6497373 + 1713087 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 699032 | 708205 | a | 0 | ... | | chr1 | 6496325 | 6497373 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 699032 708205 + 7502255 1 chr1 6496325 6497373 + 1713087 df2 Chromosome Start End Strand Distance 0 chr1 699032 708205 + 7502255 1 chr1 6496325 6497373 + 1713087 Actual Chromosome Start End Strand Distance 0 chr1 699032 708205 + 7502255 1 chr1 6496325 6497373 + 1713087 Expected Chromosome Start End Strand Distance 0 chr1 699032 708205 + 7502255 1 chr1 6496325 6497373 + 1713087 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=2, step=1) Expected index RangeIndex(start=0, stop=2, step=1) index equal [ True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpfqbxk0rt/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpfqbxk0rt/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 699032 708205 + 7502255 1 chr1 6496325 6497373 + 1713087 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 699032 | 708205 | a | 0 | ... | | chr1 | 6496325 | 6497373 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 699032 708205 + 7502255 1 chr1 6496325 6497373 + 1713087 df2 Chromosome Start End Strand Distance 0 chr1 699032 708205 + 7502255 1 chr1 6496325 6497373 + 1713087 Actual Chromosome Start End Strand Distance 0 chr1 699032 708205 + 7502255 1 chr1 6496325 6497373 + 1713087 Expected Chromosome Start End Strand Distance 0 chr1 699032 708205 + 7502255 1 chr1 6496325 6497373 + 1713087 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=2, step=1) Expected index RangeIndex(start=0, stop=2, step=1) index equal [ True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpkjmuabb8/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpkjmuabb8/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 699032 708205 + 2137104 1 chr1 699032 708205 + 7502255 2 chr1 6496325 6497373 + 1713087 3 chr1 6496325 6497373 + 3651017 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 699032 | 708205 | a | 0 | ... | | chr1 | 699032 | 708205 | a | 0 | ... | | chr1 | 6496325 | 6497373 | a | 0 | ... | | chr1 | 6496325 | 6497373 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 4 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 699032 708205 + 2137104 1 chr1 699032 708205 + 7502255 2 chr1 6496325 6497373 + 1713087 3 chr1 6496325 6497373 + 3651017 df2 Chromosome Start End Strand Distance 0 chr1 699032 708205 + 2137104 1 chr1 699032 708205 + 7502255 2 chr1 6496325 6497373 + 1713087 3 chr1 6496325 6497373 + 3651017 Actual Chromosome Start End Strand Distance 0 chr1 699032 708205 + 2137104 1 chr1 699032 708205 + 7502255 2 chr1 6496325 6497373 + 1713087 3 chr1 6496325 6497373 + 3651017 Expected Chromosome Start End Strand Distance 0 chr1 699032 708205 + 2137104 1 chr1 699032 708205 + 7502255 2 chr1 6496325 6497373 + 1713087 3 chr1 6496325 6497373 + 3651017 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=4, step=1) Expected index RangeIndex(start=0, stop=4, step=1) index equal [ True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp412095bn/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp412095bn/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 699032 708205 + 2137104 1 chr1 699032 708205 + 7502255 2 chr1 6496325 6497373 + 1713087 3 chr1 6496325 6497373 + 3651017 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 699032 | 708205 | a | 0 | ... | | chr1 | 699032 | 708205 | a | 0 | ... | | chr1 | 6496325 | 6497373 | a | 0 | ... | | chr1 | 6496325 | 6497373 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 4 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 699032 708205 + 2137104 1 chr1 699032 708205 + 7502255 2 chr1 6496325 6497373 + 1713087 3 chr1 6496325 6497373 + 3651017 df2 Chromosome Start End Strand Distance 0 chr1 699032 708205 + 2137104 1 chr1 699032 708205 + 7502255 2 chr1 6496325 6497373 + 1713087 3 chr1 6496325 6497373 + 3651017 Actual Chromosome Start End Strand Distance 0 chr1 699032 708205 + 2137104 1 chr1 699032 708205 + 7502255 2 chr1 6496325 6497373 + 1713087 3 chr1 6496325 6497373 + 3651017 Expected Chromosome Start End Strand Distance 0 chr1 699032 708205 + 2137104 1 chr1 699032 708205 + 7502255 2 chr1 6496325 6497373 + 1713087 3 chr1 6496325 6497373 + 3651017 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=4, step=1) Expected index RangeIndex(start=0, stop=4, step=1) index equal [ True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp37vjly0d/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp37vjly0d/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpz25lcqyo/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpz25lcqyo/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpanevuj5d/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpanevuj5d/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp8nb7mdxg/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp8nb7mdxg/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpov1hweou/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpov1hweou/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpzhghymzo/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpzhghymzo/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 9268564 9268565 + 9268563 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 9268564 | 9268565 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 9268564 9268565 + 9268563 df2 Chromosome Start End Strand Distance 0 chr1 9268564 9268565 + 9268563 Actual Chromosome Start End Strand Distance 0 chr1 9268564 9268565 + 9268563 Expected Chromosome Start End Strand Distance 0 chr1 9268564 9268565 + 9268563 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=1, step=1) Expected index RangeIndex(start=0, stop=1, step=1) index equal [ True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmprikmuqzt/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmprikmuqzt/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 9268564 9268565 + 9268563 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 9268564 | 9268565 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 9268564 9268565 + 9268563 df2 Chromosome Start End Strand Distance 0 chr1 9268564 9268565 + 9268563 Actual Chromosome Start End Strand Distance 0 chr1 9268564 9268565 + 9268563 Expected Chromosome Start End Strand Distance 0 chr1 9268564 9268565 + 9268563 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=1, step=1) Expected index RangeIndex(start=0, stop=1, step=1) index equal [ True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp93qllktu/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp93qllktu/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp34vb0tu0/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp34vb0tu0/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 3885388 3891623 - 152154 1 chr1 3885388 3891623 - 483974 4 chr1 8952387 8958349 - 634184 5 chr1 8952387 8958349 - 1453088 6 chr1 8952387 8962387 - 634184 7 chr1 8952387 8962387 - 1453088 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 3885388 | 3891623 | a | 0 | ... | | chr1 | 3885388 | 3891623 | a | 0 | ... | | chr1 | 8952387 | 8958349 | a | 0 | ... | | chr1 | 8952387 | 8958349 | a | 0 | ... | | chr1 | 8952387 | 8962387 | a | 0 | ... | | chr1 | 8952387 | 8962387 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 6 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 3885388 3891623 - 152154 1 chr1 3885388 3891623 - 483974 2 chr1 8952387 8958349 - 634184 3 chr1 8952387 8958349 - 1453088 4 chr1 8952387 8962387 - 634184 5 chr1 8952387 8962387 - 1453088 df2 Chromosome Start End Strand Distance 0 chr1 3885388 3891623 - 152154 1 chr1 3885388 3891623 - 483974 4 chr1 8952387 8958349 - 634184 5 chr1 8952387 8958349 - 1453088 6 chr1 8952387 8962387 - 634184 7 chr1 8952387 8962387 - 1453088 Actual Chromosome Start End Strand Distance 0 chr1 3885388 3891623 - 152154 1 chr1 3885388 3891623 - 483974 2 chr1 8952387 8958349 - 634184 3 chr1 8952387 8958349 - 1453088 4 chr1 8952387 8962387 - 634184 5 chr1 8952387 8962387 - 1453088 Expected Chromosome Start End Strand Distance 0 chr1 3885388 3891623 - 152154 1 chr1 3885388 3891623 - 483974 2 chr1 8952387 8958349 - 634184 3 chr1 8952387 8958349 - 1453088 4 chr1 8952387 8962387 - 634184 5 chr1 8952387 8962387 - 1453088 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=6, step=1) Expected index RangeIndex(start=0, stop=6, step=1) index equal [ True True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpuwtdzt6z/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpuwtdzt6z/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 1 chr1 6872035 6874252 + 6872018 2 chr1 8952387 8952642 + 8952370 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 8952387 | 8952642 | a | 0 | ... | | chr1 | 6872035 | 6874252 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 1 chr1 6872035 6874252 + 6872018 0 chr1 8952387 8952642 + 8952370 df2 Chromosome Start End Strand Distance 1 chr1 6872035 6874252 + 6872018 2 chr1 8952387 8952642 + 8952370 Actual Chromosome Start End Strand Distance 0 chr1 6872035 6874252 + 6872018 1 chr1 8952387 8952642 + 8952370 Expected Chromosome Start End Strand Distance 0 chr1 6872035 6874252 + 6872018 1 chr1 8952387 8952642 + 8952370 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=2, step=1) Expected index RangeIndex(start=0, stop=2, step=1) index equal [ True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp8u9i2c7i/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp8u9i2c7i/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 3885388 3891623 - 2980413 1 chr1 3885388 3891623 - 5060765 2 chr1 6872035 6874252 + 2078136 3 chr1 6872035 6874252 + 2980413 4 chr1 8952387 8952642 + 5060765 5 chr1 8952387 8958349 - 2078136 6 chr1 8952387 8962387 - 2078136 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 8952387 | 8952642 | a | 0 | ... | | chr1 | 6872035 | 6874252 | a | 0 | ... | | chr1 | 6872035 | 6874252 | a | 0 | ... | | chr1 | 3885388 | 3891623 | a | 0 | ... | | chr1 | 3885388 | 3891623 | a | 0 | ... | | chr1 | 8952387 | 8958349 | a | 0 | ... | | chr1 | 8952387 | 8962387 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 7 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 3 chr1 3885388 3891623 - 2980413 4 chr1 3885388 3891623 - 5060765 1 chr1 6872035 6874252 + 2078136 2 chr1 6872035 6874252 + 2980413 0 chr1 8952387 8952642 + 5060765 5 chr1 8952387 8958349 - 2078136 6 chr1 8952387 8962387 - 2078136 df2 Chromosome Start End Strand Distance 0 chr1 3885388 3891623 - 2980413 1 chr1 3885388 3891623 - 5060765 2 chr1 6872035 6874252 + 2078136 3 chr1 6872035 6874252 + 2980413 4 chr1 8952387 8952642 + 5060765 5 chr1 8952387 8958349 - 2078136 6 chr1 8952387 8962387 - 2078136 Actual Chromosome Start End Strand Distance 0 chr1 3885388 3891623 - 2980413 1 chr1 3885388 3891623 - 5060765 2 chr1 6872035 6874252 + 2078136 3 chr1 6872035 6874252 + 2980413 4 chr1 8952387 8952642 + 5060765 5 chr1 8952387 8958349 - 2078136 6 chr1 8952387 8962387 - 2078136 Expected Chromosome Start End Strand Distance 0 chr1 3885388 3891623 - 2980413 1 chr1 3885388 3891623 - 5060765 2 chr1 6872035 6874252 + 2078136 3 chr1 6872035 6874252 + 2980413 4 chr1 8952387 8952642 + 5060765 5 chr1 8952387 8958349 - 2078136 6 chr1 8952387 8962387 - 2078136 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=7, step=1) Expected index RangeIndex(start=0, stop=7, step=1) index equal [ True True True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpfphl5dbd/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpfphl5dbd/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 3885388 3891623 - 2980413 1 chr1 3885388 3891623 - 5060765 2 chr1 6872035 6874252 + 2078136 3 chr1 6872035 6874252 + 2986647 4 chr1 8952387 8952642 + 5066999 5 chr1 8952387 8958349 - 2080352 6 chr1 8952387 8962387 - 2080352 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 8952387 | 8952642 | a | 0 | ... | | chr1 | 6872035 | 6874252 | a | 0 | ... | | chr1 | 6872035 | 6874252 | a | 0 | ... | | chr1 | 3885388 | 3891623 | a | 0 | ... | | chr1 | 3885388 | 3891623 | a | 0 | ... | | chr1 | 8952387 | 8958349 | a | 0 | ... | | chr1 | 8952387 | 8962387 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 7 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 3 chr1 3885388 3891623 - 2980413 4 chr1 3885388 3891623 - 5060765 1 chr1 6872035 6874252 + 2078136 2 chr1 6872035 6874252 + 2986647 0 chr1 8952387 8952642 + 5066999 5 chr1 8952387 8958349 - 2080352 6 chr1 8952387 8962387 - 2080352 df2 Chromosome Start End Strand Distance 0 chr1 3885388 3891623 - 2980413 1 chr1 3885388 3891623 - 5060765 2 chr1 6872035 6874252 + 2078136 3 chr1 6872035 6874252 + 2986647 4 chr1 8952387 8952642 + 5066999 5 chr1 8952387 8958349 - 2080352 6 chr1 8952387 8962387 - 2080352 Actual Chromosome Start End Strand Distance 0 chr1 3885388 3891623 - 2980413 1 chr1 3885388 3891623 - 5060765 2 chr1 6872035 6874252 + 2078136 3 chr1 6872035 6874252 + 2986647 4 chr1 8952387 8952642 + 5066999 5 chr1 8952387 8958349 - 2080352 6 chr1 8952387 8962387 - 2080352 Expected Chromosome Start End Strand Distance 0 chr1 3885388 3891623 - 2980413 1 chr1 3885388 3891623 - 5060765 2 chr1 6872035 6874252 + 2078136 3 chr1 6872035 6874252 + 2986647 4 chr1 8952387 8952642 + 5066999 5 chr1 8952387 8958349 - 2080352 6 chr1 8952387 8962387 - 2080352 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=7, step=1) Expected index RangeIndex(start=0, stop=7, step=1) index equal [ True True True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmphfxvegwc/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmphfxvegwc/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmphq6vg3_o/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmphq6vg3_o/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp4j_rhedx/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp4j_rhedx/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 3885388 3891623 - 2980413 1 chr1 3885388 3891623 - 3885387 2 chr1 6872035 6872036 - 6872034 3 chr1 8952387 8952388 - 2080352 4 chr1 8952387 8952388 - 8952386 5 chr1 8952387 8952388 - 2080352 6 chr1 8952387 8952388 - 8952386 7 chr1 8952387 8962387 - 2080352 8 chr1 8952387 8962387 - 8952386 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 3885388 | 3891623 | a | 0 | ... | | chr1 | 3885388 | 3891623 | a | 0 | ... | | chr1 | 8952387 | 8952388 | a | 0 | ... | | chr1 | 8952387 | 8952388 | a | 0 | ... | | ... | ... | ... | ... | ... | ... | | chr1 | 8952387 | 8962387 | a | 0 | ... | | chr1 | 8952387 | 8952388 | a | 0 | ... | | chr1 | 8952387 | 8952388 | a | 0 | ... | | chr1 | 6872035 | 6872036 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 9 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 3885388 3891623 - 2980413 1 chr1 3885388 3891623 - 3885387 8 chr1 6872035 6872036 - 6872034 2 chr1 8952387 8952388 - 2080352 6 chr1 8952387 8952388 - 2080352 3 chr1 8952387 8952388 - 8952386 7 chr1 8952387 8952388 - 8952386 4 chr1 8952387 8962387 - 2080352 5 chr1 8952387 8962387 - 8952386 df2 Chromosome Start End Strand Distance 0 chr1 3885388 3891623 - 2980413 1 chr1 3885388 3891623 - 3885387 2 chr1 6872035 6872036 - 6872034 3 chr1 8952387 8952388 - 2080352 5 chr1 8952387 8952388 - 2080352 4 chr1 8952387 8952388 - 8952386 6 chr1 8952387 8952388 - 8952386 7 chr1 8952387 8962387 - 2080352 8 chr1 8952387 8962387 - 8952386 Actual Chromosome Start End Strand Distance 0 chr1 3885388 3891623 - 2980413 1 chr1 3885388 3891623 - 3885387 2 chr1 6872035 6872036 - 6872034 3 chr1 8952387 8952388 - 2080352 4 chr1 8952387 8952388 - 2080352 5 chr1 8952387 8952388 - 8952386 6 chr1 8952387 8952388 - 8952386 7 chr1 8952387 8962387 - 2080352 8 chr1 8952387 8962387 - 8952386 Expected Chromosome Start End Strand Distance 0 chr1 3885388 3891623 - 2980413 1 chr1 3885388 3891623 - 3885387 2 chr1 6872035 6872036 - 6872034 3 chr1 8952387 8952388 - 2080352 4 chr1 8952387 8952388 - 2080352 5 chr1 8952387 8952388 - 8952386 6 chr1 8952387 8952388 - 8952386 7 chr1 8952387 8962387 - 2080352 8 chr1 8952387 8962387 - 8952386 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=9, step=1) Expected index RangeIndex(start=0, stop=9, step=1) index equal [ True True True True True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp_dxlfng5/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp_dxlfng5/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpmlq2kspi/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpmlq2kspi/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpw5mbgw28/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpw5mbgw28/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpjuf9xe8w/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpjuf9xe8w/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpkbqgwtd2/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpkbqgwtd2/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 2 7304 - 3285255 1 chr1 2 7304 - 8475119 2 chr1 4973587 4980202 + 1913424 3 chr1 4973587 4980202 + 4725647 4 chr1 6604630 6611682 + 3193334 5 chr1 6604630 6611682 + 3544467 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 6604630 | 6611682 | a | 0 | ... | | chr1 | 6604630 | 6611682 | a | 0 | ... | | chr1 | 4973587 | 4980202 | a | 0 | ... | | chr1 | 4973587 | 4980202 | a | 0 | ... | | chr1 | 2 | 7304 | a | 0 | ... | | chr1 | 2 | 7304 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 6 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 4 chr1 2 7304 - 3285255 5 chr1 2 7304 - 8475119 2 chr1 4973587 4980202 + 1913424 3 chr1 4973587 4980202 + 4725647 0 chr1 6604630 6611682 + 3193334 1 chr1 6604630 6611682 + 3544467 df2 Chromosome Start End Strand Distance 0 chr1 2 7304 - 3285255 1 chr1 2 7304 - 8475119 2 chr1 4973587 4980202 + 1913424 3 chr1 4973587 4980202 + 4725647 4 chr1 6604630 6611682 + 3193334 5 chr1 6604630 6611682 + 3544467 Actual Chromosome Start End Strand Distance 0 chr1 2 7304 - 3285255 1 chr1 2 7304 - 8475119 2 chr1 4973587 4980202 + 1913424 3 chr1 4973587 4980202 + 4725647 4 chr1 6604630 6611682 + 3193334 5 chr1 6604630 6611682 + 3544467 Expected Chromosome Start End Strand Distance 0 chr1 2 7304 - 3285255 1 chr1 2 7304 - 8475119 2 chr1 4973587 4980202 + 1913424 3 chr1 4973587 4980202 + 4725647 4 chr1 6604630 6611682 + 3193334 5 chr1 6604630 6611682 + 3544467 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=6, step=1) Expected index RangeIndex(start=0, stop=6, step=1) index equal [ True True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp25uft6n3/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp25uft6n3/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 2 7304 - 3285255 1 chr1 2 7304 - 8475119 2 chr1 4973587 4980202 + 1913424 3 chr1 4973587 4980202 + 4725647 4 chr1 6604630 6611682 + 3193334 5 chr1 6604630 6611682 + 3544467 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 6604630 | 6611682 | a | 0 | ... | | chr1 | 6604630 | 6611682 | a | 0 | ... | | chr1 | 4973587 | 4980202 | a | 0 | ... | | chr1 | 4973587 | 4980202 | a | 0 | ... | | chr1 | 2 | 7304 | a | 0 | ... | | chr1 | 2 | 7304 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 6 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 4 chr1 2 7304 - 3285255 5 chr1 2 7304 - 8475119 2 chr1 4973587 4980202 + 1913424 3 chr1 4973587 4980202 + 4725647 0 chr1 6604630 6611682 + 3193334 1 chr1 6604630 6611682 + 3544467 df2 Chromosome Start End Strand Distance 0 chr1 2 7304 - 3285255 1 chr1 2 7304 - 8475119 2 chr1 4973587 4980202 + 1913424 3 chr1 4973587 4980202 + 4725647 4 chr1 6604630 6611682 + 3193334 5 chr1 6604630 6611682 + 3544467 Actual Chromosome Start End Strand Distance 0 chr1 2 7304 - 3285255 1 chr1 2 7304 - 8475119 2 chr1 4973587 4980202 + 1913424 3 chr1 4973587 4980202 + 4725647 4 chr1 6604630 6611682 + 3193334 5 chr1 6604630 6611682 + 3544467 Expected Chromosome Start End Strand Distance 0 chr1 2 7304 - 3285255 1 chr1 2 7304 - 8475119 2 chr1 4973587 4980202 + 1913424 3 chr1 4973587 4980202 + 4725647 4 chr1 6604630 6611682 + 3193334 5 chr1 6604630 6611682 + 3544467 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=6, step=1) Expected index RangeIndex(start=0, stop=6, step=1) index equal [ True True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp56wxt2db/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp56wxt2db/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 618836 619937 + 370896 1 chr1 618836 619937 + 2438905 2 chr1 914562 919317 + 666622 3 chr1 914562 919317 + 2139525 4 chr1 3298210 3303057 + 238047 5 chr1 3298210 3303057 + 3050270 6 chr1 6604630 6611682 + 3193334 7 chr1 6604630 6611682 + 3544467 8 chr1 8916775 8921062 + 883954 9 chr1 8916775 8921062 + 5856612 10 chr14 2 7304 - 8184867 11 chr2 1740997 1750501 + 7674918 13 chr21 1301699 1303918 + 4876152 14 chr21 4973587 4980202 + 1199868 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 3298210 | 3303057 | a | 0 | ... | | chr1 | 3298210 | 3303057 | a | 0 | ... | | chr1 | 618836 | 619937 | a | 0 | ... | | chr1 | 618836 | 619937 | a | 0 | ... | | ... | ... | ... | ... | ... | ... | | chr2 | 1740997 | 1750501 | a | 0 | ... | | chr14 | 2 | 7304 | a | 0 | ... | | chr21 | 1301699 | 1303918 | a | 0 | ... | | chr21 | 4973587 | 4980202 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 14 rows and 12 columns from 4 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 11 chr14 2 7304 - 8184867 2 chr1 618836 619937 + 370896 3 chr1 618836 619937 + 2438905 6 chr1 914562 919317 + 666622 7 chr1 914562 919317 + 2139525 12 chr21 1301699 1303918 + 4876152 10 chr2 1740997 1750501 + 7674918 0 chr1 3298210 3303057 + 238047 1 chr1 3298210 3303057 + 3050270 13 chr21 4973587 4980202 + 1199868 4 chr1 6604630 6611682 + 3193334 5 chr1 6604630 6611682 + 3544467 8 chr1 8916775 8921062 + 883954 9 chr1 8916775 8921062 + 5856612 df2 Chromosome Start End Strand Distance 10 chr14 2 7304 - 8184867 0 chr1 618836 619937 + 370896 1 chr1 618836 619937 + 2438905 2 chr1 914562 919317 + 666622 3 chr1 914562 919317 + 2139525 13 chr21 1301699 1303918 + 4876152 11 chr2 1740997 1750501 + 7674918 4 chr1 3298210 3303057 + 238047 5 chr1 3298210 3303057 + 3050270 14 chr21 4973587 4980202 + 1199868 6 chr1 6604630 6611682 + 3193334 7 chr1 6604630 6611682 + 3544467 8 chr1 8916775 8921062 + 883954 9 chr1 8916775 8921062 + 5856612 Actual Chromosome Start End Strand Distance 0 chr1 618836 619937 + 370896 1 chr1 618836 619937 + 2438905 2 chr1 914562 919317 + 666622 3 chr1 914562 919317 + 2139525 4 chr1 3298210 3303057 + 238047 5 chr1 3298210 3303057 + 3050270 6 chr1 6604630 6611682 + 3193334 7 chr1 6604630 6611682 + 3544467 8 chr1 8916775 8921062 + 883954 9 chr1 8916775 8921062 + 5856612 10 chr14 2 7304 - 8184867 11 chr2 1740997 1750501 + 7674918 12 chr21 1301699 1303918 + 4876152 13 chr21 4973587 4980202 + 1199868 Expected Chromosome Start End Strand Distance 0 chr1 618836 619937 + 370896 1 chr1 618836 619937 + 2438905 2 chr1 914562 919317 + 666622 3 chr1 914562 919317 + 2139525 4 chr1 3298210 3303057 + 238047 5 chr1 3298210 3303057 + 3050270 6 chr1 6604630 6611682 + 3193334 7 chr1 6604630 6611682 + 3544467 8 chr1 8916775 8921062 + 883954 9 chr1 8916775 8921062 + 5856612 10 chr14 2 7304 - 8184867 11 chr2 1740997 1750501 + 7674918 12 chr21 1301699 1303918 + 4876152 13 chr21 4973587 4980202 + 1199868 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=14, step=1) Expected index RangeIndex(start=0, stop=14, step=1) index equal [ True True True True True True True True True True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpa92k4mhs/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpa92k4mhs/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpfz9rxj0i/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpfz9rxj0i/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp7d_e3z_p/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp7d_e3z_p/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpp4elsy1n/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpp4elsy1n/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp5lxgs_zc/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp5lxgs_zc/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp34nfu2to/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp34nfu2to/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp3bv8l1q2/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp3bv8l1q2/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpnsx6e8h4/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpnsx6e8h4/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmppbr_zryg/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmppbr_zryg/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 3423760 3432067 + 3184938 1 chr1 8481955 8488856 - 278042 2 chr1 8481955 8488856 - 575786 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 3423760 | 3432067 | a | 0 | ... | | chr1 | 8481955 | 8488856 | a | 0 | ... | | chr1 | 8481955 | 8488856 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 3 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 3423760 3432067 + 3184938 1 chr1 8481955 8488856 - 278042 2 chr1 8481955 8488856 - 575786 df2 Chromosome Start End Strand Distance 0 chr1 3423760 3432067 + 3184938 1 chr1 8481955 8488856 - 278042 2 chr1 8481955 8488856 - 575786 Actual Chromosome Start End Strand Distance 0 chr1 3423760 3432067 + 3184938 1 chr1 8481955 8488856 - 278042 2 chr1 8481955 8488856 - 575786 Expected Chromosome Start End Strand Distance 0 chr1 3423760 3432067 + 3184938 1 chr1 8481955 8488856 - 278042 2 chr1 8481955 8488856 - 575786 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=3, step=1) Expected index RangeIndex(start=0, stop=3, step=1) index equal [ True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp7ozzs9w1/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp7ozzs9w1/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 3423760 3432067 + 3184938 1 chr1 8481955 8488856 + 1858969 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 3423760 | 3432067 | a | 0 | ... | | chr1 | 8481955 | 8488856 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 3423760 3432067 + 3184938 1 chr1 8481955 8488856 + 1858969 df2 Chromosome Start End Strand Distance 0 chr1 3423760 3432067 + 3184938 1 chr1 8481955 8488856 + 1858969 Actual Chromosome Start End Strand Distance 0 chr1 3423760 3432067 + 3184938 1 chr1 8481955 8488856 + 1858969 Expected Chromosome Start End Strand Distance 0 chr1 3423760 3432067 + 3184938 1 chr1 8481955 8488856 + 1858969 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=2, step=1) Expected index RangeIndex(start=0, stop=2, step=1) index equal [ True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp2f2k_va2/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp2f2k_va2/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 3423760 3432067 + 3418611 1 chr1 3423760 3432067 + 3423759 2 chr1 8481955 8488856 + 8476806 3 chr1 8481955 8488856 + 8481954 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 3423760 | 3432067 | a | 0 | ... | | chr1 | 3423760 | 3432067 | a | 0 | ... | | chr1 | 8481955 | 8488856 | a | 0 | ... | | chr1 | 8481955 | 8488856 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 4 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 3423760 3432067 + 3418611 1 chr1 3423760 3432067 + 3423759 2 chr1 8481955 8488856 + 8476806 3 chr1 8481955 8488856 + 8481954 df2 Chromosome Start End Strand Distance 0 chr1 3423760 3432067 + 3418611 1 chr1 3423760 3432067 + 3423759 2 chr1 8481955 8488856 + 8476806 3 chr1 8481955 8488856 + 8481954 Actual Chromosome Start End Strand Distance 0 chr1 3423760 3432067 + 3418611 1 chr1 3423760 3432067 + 3423759 2 chr1 8481955 8488856 + 8476806 3 chr1 8481955 8488856 + 8481954 Expected Chromosome Start End Strand Distance 0 chr1 3423760 3432067 + 3418611 1 chr1 3423760 3432067 + 3423759 2 chr1 8481955 8488856 + 8476806 3 chr1 8481955 8488856 + 8481954 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=4, step=1) Expected index RangeIndex(start=0, stop=4, step=1) index equal [ True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp2b0scebu/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp2b0scebu/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 3423760 3432067 + 3423759 1 chr1 8481955 8488856 + 8481954 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 3423760 | 3432067 | a | 0 | ... | | chr1 | 8481955 | 8488856 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 3423760 3432067 + 3423759 1 chr1 8481955 8488856 + 8481954 df2 Chromosome Start End Strand Distance 0 chr1 3423760 3432067 + 3423759 1 chr1 8481955 8488856 + 8481954 Actual Chromosome Start End Strand Distance 0 chr1 3423760 3432067 + 3423759 1 chr1 8481955 8488856 + 8481954 Expected Chromosome Start End Strand Distance 0 chr1 3423760 3432067 + 3423759 1 chr1 8481955 8488856 + 8481954 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=2, step=1) Expected index RangeIndex(start=0, stop=2, step=1) index equal [ True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp4lodh9kv/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp4lodh9kv/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 3423760 3432067 + 3423759 1 chr1 8481955 8488856 + 8481954 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 3423760 | 3432067 | a | 0 | ... | | chr1 | 8481955 | 8488856 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 3423760 3432067 + 3423759 1 chr1 8481955 8488856 + 8481954 df2 Chromosome Start End Strand Distance 0 chr1 3423760 3432067 + 3423759 1 chr1 8481955 8488856 + 8481954 Actual Chromosome Start End Strand Distance 0 chr1 3423760 3432067 + 3423759 1 chr1 8481955 8488856 + 8481954 Expected Chromosome Start End Strand Distance 0 chr1 3423760 3432067 + 3423759 1 chr1 8481955 8488856 + 8481954 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=2, step=1) Expected index RangeIndex(start=0, stop=2, step=1) index equal [ True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp28hi20j1/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp28hi20j1/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 3423760 3432067 + 3423759 1 chr1 8481955 8488856 + 8481954 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 3423760 | 3432067 | a | 0 | ... | | chr1 | 8481955 | 8488856 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 3423760 3432067 + 3423759 1 chr1 8481955 8488856 + 8481954 df2 Chromosome Start End Strand Distance 0 chr1 3423760 3432067 + 3423759 1 chr1 8481955 8488856 + 8481954 Actual Chromosome Start End Strand Distance 0 chr1 3423760 3432067 + 3423759 1 chr1 8481955 8488856 + 8481954 Expected Chromosome Start End Strand Distance 0 chr1 3423760 3432067 + 3423759 1 chr1 8481955 8488856 + 8481954 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=2, step=1) Expected index RangeIndex(start=0, stop=2, step=1) index equal [ True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpk2msgum0/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpk2msgum0/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 3423760 3432067 + 3423759 1 chr1 8481955 8488856 + 8481954 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 3423760 | 3432067 | a | 0 | ... | | chr1 | 8481955 | 8488856 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 3423760 3432067 + 3423759 1 chr1 8481955 8488856 + 8481954 df2 Chromosome Start End Strand Distance 0 chr1 3423760 3432067 + 3423759 1 chr1 8481955 8488856 + 8481954 Actual Chromosome Start End Strand Distance 0 chr1 3423760 3432067 + 3423759 1 chr1 8481955 8488856 + 8481954 Expected Chromosome Start End Strand Distance 0 chr1 3423760 3432067 + 3423759 1 chr1 8481955 8488856 + 8481954 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=2, step=1) Expected index RangeIndex(start=0, stop=2, step=1) index equal [ True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp0qz1px8k/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp0qz1px8k/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 7512344 7512345 + 1283845 1 chr1 7512344 7512345 + 1308366 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 7512344 | 7512345 | a | 0 | ... | | chr1 | 7512344 | 7512345 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 7512344 7512345 + 1283845 1 chr1 7512344 7512345 + 1308366 df2 Chromosome Start End Strand Distance 0 chr1 7512344 7512345 + 1283845 1 chr1 7512344 7512345 + 1308366 Actual Chromosome Start End Strand Distance 0 chr1 7512344 7512345 + 1283845 1 chr1 7512344 7512345 + 1308366 Expected Chromosome Start End Strand Distance 0 chr1 7512344 7512345 + 1283845 1 chr1 7512344 7512345 + 1308366 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=2, step=1) Expected index RangeIndex(start=0, stop=2, step=1) index equal [ True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpopld_znk/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpopld_znk/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 7512344 7512345 + 1283845 1 chr1 7512344 7512345 + 1308366 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 7512344 | 7512345 | a | 0 | ... | | chr1 | 7512344 | 7512345 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 7512344 7512345 + 1283845 1 chr1 7512344 7512345 + 1308366 df2 Chromosome Start End Strand Distance 0 chr1 7512344 7512345 + 1283845 1 chr1 7512344 7512345 + 1308366 Actual Chromosome Start End Strand Distance 0 chr1 7512344 7512345 + 1283845 1 chr1 7512344 7512345 + 1308366 Expected Chromosome Start End Strand Distance 0 chr1 7512344 7512345 + 1283845 1 chr1 7512344 7512345 + 1308366 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=2, step=1) Expected index RangeIndex(start=0, stop=2, step=1) index equal [ True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpkd9so860/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpkd9so860/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 1 chr21 1032681 1038933 + 817534 2 chr21 1032681 1038933 + 1731286 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr21 | 1032681 | 1038933 | a | 0 | ... | | chr21 | 1032681 | 1038933 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr21 1032681 1038933 + 817534 1 chr21 1032681 1038933 + 1731286 df2 Chromosome Start End Strand Distance 1 chr21 1032681 1038933 + 817534 2 chr21 1032681 1038933 + 1731286 Actual Chromosome Start End Strand Distance 0 chr21 1032681 1038933 + 817534 1 chr21 1032681 1038933 + 1731286 Expected Chromosome Start End Strand Distance 0 chr21 1032681 1038933 + 817534 1 chr21 1032681 1038933 + 1731286 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=2, step=1) Expected index RangeIndex(start=0, stop=2, step=1) index equal [ True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp3g2ldrob/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp3g2ldrob/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr21 205242 215148 - 1485445 1 chr21 205242 215148 - 4192926 2 chr21 1700592 1705481 + 1064738 3 chr21 1700592 1705481 + 1169016 4 chr21 2770218 2777356 - 1064738 5 chr21 2770218 2777356 - 1630718 6 chr21 2874496 2882948 - 1169016 7 chr21 2874496 2882948 - 1525126 8 chr21 3037884 3046993 - 1332404 9 chr21 3037884 3046993 - 1361081 10 chr21 4408073 4409166 + 1361081 11 chr21 4408073 4409166 + 1525126 12 chr21 5535659 5540935 + 685975 13 chr21 5535659 5540935 + 2488667 14 chr21 6226909 6228500 - 685975 15 chr21 6226909 6228500 - 1627926 16 chr21 7856425 7860801 + 959910 17 chr21 7856425 7860801 + 1627926 18 chr21 8652378 8652691 + 168020 19 chr21 8652378 8652691 + 2423879 20 chr21 8820710 8827256 - 168020 21 chr21 8820710 8827256 - 959910 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr21 | 7856425 | 7860801 | a | 0 | ... | | chr21 | 7856425 | 7860801 | a | 0 | ... | | chr21 | 8652378 | 8652691 | a | 0 | ... | | chr21 | 8652378 | 8652691 | a | 0 | ... | | ... | ... | ... | ... | ... | ... | | chr21 | 6226909 | 6228500 | a | 0 | ... | | chr21 | 6226909 | 6228500 | a | 0 | ... | | chr21 | 3037884 | 3046993 | a | 0 | ... | | chr21 | 3037884 | 3046993 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 22 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 14 chr21 205242 215148 - 1485445 15 chr21 205242 215148 - 4192926 8 chr21 1700592 1705481 + 1064738 9 chr21 1700592 1705481 + 1169016 12 chr21 2770218 2777356 - 1064738 13 chr21 2770218 2777356 - 1630718 10 chr21 2874496 2882948 - 1169016 11 chr21 2874496 2882948 - 1525126 20 chr21 3037884 3046993 - 1332404 21 chr21 3037884 3046993 - 1361081 6 chr21 4408073 4409166 + 1361081 7 chr21 4408073 4409166 + 1525126 4 chr21 5535659 5540935 + 685975 5 chr21 5535659 5540935 + 2488667 18 chr21 6226909 6228500 - 685975 19 chr21 6226909 6228500 - 1627926 0 chr21 7856425 7860801 + 959910 1 chr21 7856425 7860801 + 1627926 2 chr21 8652378 8652691 + 168020 3 chr21 8652378 8652691 + 2423879 16 chr21 8820710 8827256 - 168020 17 chr21 8820710 8827256 - 959910 df2 Chromosome Start End Strand Distance 0 chr21 205242 215148 - 1485445 1 chr21 205242 215148 - 4192926 2 chr21 1700592 1705481 + 1064738 3 chr21 1700592 1705481 + 1169016 4 chr21 2770218 2777356 - 1064738 5 chr21 2770218 2777356 - 1630718 6 chr21 2874496 2882948 - 1169016 7 chr21 2874496 2882948 - 1525126 8 chr21 3037884 3046993 - 1332404 9 chr21 3037884 3046993 - 1361081 10 chr21 4408073 4409166 + 1361081 11 chr21 4408073 4409166 + 1525126 12 chr21 5535659 5540935 + 685975 13 chr21 5535659 5540935 + 2488667 14 chr21 6226909 6228500 - 685975 15 chr21 6226909 6228500 - 1627926 16 chr21 7856425 7860801 + 959910 17 chr21 7856425 7860801 + 1627926 18 chr21 8652378 8652691 + 168020 19 chr21 8652378 8652691 + 2423879 20 chr21 8820710 8827256 - 168020 21 chr21 8820710 8827256 - 959910 Actual Chromosome Start End Strand Distance 0 chr21 205242 215148 - 1485445 1 chr21 205242 215148 - 4192926 2 chr21 1700592 1705481 + 1064738 3 chr21 1700592 1705481 + 1169016 4 chr21 2770218 2777356 - 1064738 5 chr21 2770218 2777356 - 1630718 6 chr21 2874496 2882948 - 1169016 7 chr21 2874496 2882948 - 1525126 8 chr21 3037884 3046993 - 1332404 9 chr21 3037884 3046993 - 1361081 10 chr21 4408073 4409166 + 1361081 11 chr21 4408073 4409166 + 1525126 12 chr21 5535659 5540935 + 685975 13 chr21 5535659 5540935 + 2488667 14 chr21 6226909 6228500 - 685975 15 chr21 6226909 6228500 - 1627926 16 chr21 7856425 7860801 + 959910 17 chr21 7856425 7860801 + 1627926 18 chr21 8652378 8652691 + 168020 19 chr21 8652378 8652691 + 2423879 20 chr21 8820710 8827256 - 168020 21 chr21 8820710 8827256 - 959910 Expected Chromosome Start End Strand Distance 0 chr21 205242 215148 - 1485445 1 chr21 205242 215148 - 4192926 2 chr21 1700592 1705481 + 1064738 3 chr21 1700592 1705481 + 1169016 4 chr21 2770218 2777356 - 1064738 5 chr21 2770218 2777356 - 1630718 6 chr21 2874496 2882948 - 1169016 7 chr21 2874496 2882948 - 1525126 8 chr21 3037884 3046993 - 1332404 9 chr21 3037884 3046993 - 1361081 10 chr21 4408073 4409166 + 1361081 11 chr21 4408073 4409166 + 1525126 12 chr21 5535659 5540935 + 685975 13 chr21 5535659 5540935 + 2488667 14 chr21 6226909 6228500 - 685975 15 chr21 6226909 6228500 - 1627926 16 chr21 7856425 7860801 + 959910 17 chr21 7856425 7860801 + 1627926 18 chr21 8652378 8652691 + 168020 19 chr21 8652378 8652691 + 2423879 20 chr21 8820710 8827256 - 168020 21 chr21 8820710 8827256 - 959910 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=22, step=1) Expected index RangeIndex(start=0, stop=22, step=1) index equal [ True True True True True True True True True True True True True True True True True True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpnziyqczs/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpnziyqczs/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr21 205242 215148 - 1485445 1 chr21 205242 215148 - 4192926 2 chr21 1700592 1705481 + 1064738 3 chr21 1700592 1705481 + 1169016 4 chr21 2770218 2777356 - 1069626 5 chr21 2770218 2777356 - 1630718 6 chr21 2874496 2882948 - 1173904 7 chr21 2874496 2882948 - 1525126 8 chr21 3037884 3046993 - 1337292 9 chr21 3037884 3046993 - 1361081 10 chr21 4408073 4409166 + 1370189 11 chr21 4408073 4409166 + 1533577 12 chr21 5535659 5540935 + 685975 13 chr21 5535659 5540935 + 2497775 14 chr21 6226909 6228500 - 691250 15 chr21 6226909 6228500 - 1627926 16 chr21 7856425 7860801 + 959910 17 chr21 7856425 7860801 + 1629516 18 chr21 8652378 8652691 + 168020 19 chr21 8652378 8652691 + 2425469 20 chr21 8820710 8827256 - 168332 21 chr21 8820710 8827256 - 964285 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr21 | 7856425 | 7860801 | a | 0 | ... | | chr21 | 7856425 | 7860801 | a | 0 | ... | | chr21 | 8652378 | 8652691 | a | 0 | ... | | chr21 | 8652378 | 8652691 | a | 0 | ... | | ... | ... | ... | ... | ... | ... | | chr21 | 6226909 | 6228500 | a | 0 | ... | | chr21 | 6226909 | 6228500 | a | 0 | ... | | chr21 | 3037884 | 3046993 | a | 0 | ... | | chr21 | 3037884 | 3046993 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 22 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 14 chr21 205242 215148 - 1485445 15 chr21 205242 215148 - 4192926 8 chr21 1700592 1705481 + 1064738 9 chr21 1700592 1705481 + 1169016 12 chr21 2770218 2777356 - 1069626 13 chr21 2770218 2777356 - 1630718 10 chr21 2874496 2882948 - 1173904 11 chr21 2874496 2882948 - 1525126 20 chr21 3037884 3046993 - 1337292 21 chr21 3037884 3046993 - 1361081 6 chr21 4408073 4409166 + 1370189 7 chr21 4408073 4409166 + 1533577 4 chr21 5535659 5540935 + 685975 5 chr21 5535659 5540935 + 2497775 18 chr21 6226909 6228500 - 691250 19 chr21 6226909 6228500 - 1627926 0 chr21 7856425 7860801 + 959910 1 chr21 7856425 7860801 + 1629516 2 chr21 8652378 8652691 + 168020 3 chr21 8652378 8652691 + 2425469 16 chr21 8820710 8827256 - 168332 17 chr21 8820710 8827256 - 964285 df2 Chromosome Start End Strand Distance 0 chr21 205242 215148 - 1485445 1 chr21 205242 215148 - 4192926 2 chr21 1700592 1705481 + 1064738 3 chr21 1700592 1705481 + 1169016 4 chr21 2770218 2777356 - 1069626 5 chr21 2770218 2777356 - 1630718 6 chr21 2874496 2882948 - 1173904 7 chr21 2874496 2882948 - 1525126 8 chr21 3037884 3046993 - 1337292 9 chr21 3037884 3046993 - 1361081 10 chr21 4408073 4409166 + 1370189 11 chr21 4408073 4409166 + 1533577 12 chr21 5535659 5540935 + 685975 13 chr21 5535659 5540935 + 2497775 14 chr21 6226909 6228500 - 691250 15 chr21 6226909 6228500 - 1627926 16 chr21 7856425 7860801 + 959910 17 chr21 7856425 7860801 + 1629516 18 chr21 8652378 8652691 + 168020 19 chr21 8652378 8652691 + 2425469 20 chr21 8820710 8827256 - 168332 21 chr21 8820710 8827256 - 964285 Actual Chromosome Start End Strand Distance 0 chr21 205242 215148 - 1485445 1 chr21 205242 215148 - 4192926 2 chr21 1700592 1705481 + 1064738 3 chr21 1700592 1705481 + 1169016 4 chr21 2770218 2777356 - 1069626 5 chr21 2770218 2777356 - 1630718 6 chr21 2874496 2882948 - 1173904 7 chr21 2874496 2882948 - 1525126 8 chr21 3037884 3046993 - 1337292 9 chr21 3037884 3046993 - 1361081 10 chr21 4408073 4409166 + 1370189 11 chr21 4408073 4409166 + 1533577 12 chr21 5535659 5540935 + 685975 13 chr21 5535659 5540935 + 2497775 14 chr21 6226909 6228500 - 691250 15 chr21 6226909 6228500 - 1627926 16 chr21 7856425 7860801 + 959910 17 chr21 7856425 7860801 + 1629516 18 chr21 8652378 8652691 + 168020 19 chr21 8652378 8652691 + 2425469 20 chr21 8820710 8827256 - 168332 21 chr21 8820710 8827256 - 964285 Expected Chromosome Start End Strand Distance 0 chr21 205242 215148 - 1485445 1 chr21 205242 215148 - 4192926 2 chr21 1700592 1705481 + 1064738 3 chr21 1700592 1705481 + 1169016 4 chr21 2770218 2777356 - 1069626 5 chr21 2770218 2777356 - 1630718 6 chr21 2874496 2882948 - 1173904 7 chr21 2874496 2882948 - 1525126 8 chr21 3037884 3046993 - 1337292 9 chr21 3037884 3046993 - 1361081 10 chr21 4408073 4409166 + 1370189 11 chr21 4408073 4409166 + 1533577 12 chr21 5535659 5540935 + 685975 13 chr21 5535659 5540935 + 2497775 14 chr21 6226909 6228500 - 691250 15 chr21 6226909 6228500 - 1627926 16 chr21 7856425 7860801 + 959910 17 chr21 7856425 7860801 + 1629516 18 chr21 8652378 8652691 + 168020 19 chr21 8652378 8652691 + 2425469 20 chr21 8820710 8827256 - 168332 21 chr21 8820710 8827256 - 964285 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=22, step=1) Expected index RangeIndex(start=0, stop=22, step=1) index equal [ True True True True True True True True True True True True True True True True True True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmplabetern/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmplabetern/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr21 205242 215148 - 1485445 1 chr21 205242 215148 - 2555071 3 chr21 2770218 2777356 - 97141 4 chr21 2770218 2777356 - 260529 5 chr21 2874496 2882948 - 104278 6 chr21 2874496 2882948 - 154937 7 chr21 3037884 3046993 - 163388 8 chr21 3037884 3046993 - 267666 11 chr21 6226909 6228500 - 691250 12 chr21 6226909 6228500 - 1627926 15 chr21 8820710 8827256 - 168332 16 chr21 8820710 8827256 - 964285 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr21 | 2874496 | 2882948 | a | 0 | ... | | chr21 | 2874496 | 2882948 | a | 0 | ... | | chr21 | 2770218 | 2777356 | a | 0 | ... | | chr21 | 2770218 | 2777356 | a | 0 | ... | | ... | ... | ... | ... | ... | ... | | chr21 | 6226909 | 6228500 | a | 0 | ... | | chr21 | 6226909 | 6228500 | a | 0 | ... | | chr21 | 3037884 | 3046993 | a | 0 | ... | | chr21 | 3037884 | 3046993 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 12 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 4 chr21 205242 215148 - 1485445 5 chr21 205242 215148 - 2555071 2 chr21 2770218 2777356 - 97141 3 chr21 2770218 2777356 - 260529 0 chr21 2874496 2882948 - 104278 1 chr21 2874496 2882948 - 154937 10 chr21 3037884 3046993 - 163388 11 chr21 3037884 3046993 - 267666 8 chr21 6226909 6228500 - 691250 9 chr21 6226909 6228500 - 1627926 6 chr21 8820710 8827256 - 168332 7 chr21 8820710 8827256 - 964285 df2 Chromosome Start End Strand Distance 0 chr21 205242 215148 - 1485445 1 chr21 205242 215148 - 2555071 3 chr21 2770218 2777356 - 97141 4 chr21 2770218 2777356 - 260529 5 chr21 2874496 2882948 - 104278 6 chr21 2874496 2882948 - 154937 7 chr21 3037884 3046993 - 163388 8 chr21 3037884 3046993 - 267666 11 chr21 6226909 6228500 - 691250 12 chr21 6226909 6228500 - 1627926 15 chr21 8820710 8827256 - 168332 16 chr21 8820710 8827256 - 964285 Actual Chromosome Start End Strand Distance 0 chr21 205242 215148 - 1485445 1 chr21 205242 215148 - 2555071 2 chr21 2770218 2777356 - 97141 3 chr21 2770218 2777356 - 260529 4 chr21 2874496 2882948 - 104278 5 chr21 2874496 2882948 - 154937 6 chr21 3037884 3046993 - 163388 7 chr21 3037884 3046993 - 267666 8 chr21 6226909 6228500 - 691250 9 chr21 6226909 6228500 - 1627926 10 chr21 8820710 8827256 - 168332 11 chr21 8820710 8827256 - 964285 Expected Chromosome Start End Strand Distance 0 chr21 205242 215148 - 1485445 1 chr21 205242 215148 - 2555071 2 chr21 2770218 2777356 - 97141 3 chr21 2770218 2777356 - 260529 4 chr21 2874496 2882948 - 104278 5 chr21 2874496 2882948 - 154937 6 chr21 3037884 3046993 - 163388 7 chr21 3037884 3046993 - 267666 8 chr21 6226909 6228500 - 691250 9 chr21 6226909 6228500 - 1627926 10 chr21 8820710 8827256 - 168332 11 chr21 8820710 8827256 - 964285 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=12, step=1) Expected index RangeIndex(start=0, stop=12, step=1) index equal [ True True True True True True True True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmphd6d29vn/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmphd6d29vn/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr21 205242 215148 - 1485445 1 chr21 205242 215148 - 2555071 3 chr21 2770218 2771642 - 102855 4 chr21 2770218 2771642 - 266243 5 chr21 2874496 2882948 - 104278 6 chr21 2874496 2882948 - 154937 7 chr21 3037884 3046993 - 163388 8 chr21 3037884 3046993 - 267666 11 chr21 6226909 6228500 - 691250 12 chr21 6226909 6228500 - 1627926 15 chr21 8820710 8827256 - 168332 16 chr21 8820710 8827256 - 964285 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr21 | 2874496 | 2882948 | a | 0 | ... | | chr21 | 2874496 | 2882948 | a | 0 | ... | | chr21 | 2770218 | 2771642 | a | 0 | ... | | chr21 | 2770218 | 2771642 | a | 0 | ... | | ... | ... | ... | ... | ... | ... | | chr21 | 6226909 | 6228500 | a | 0 | ... | | chr21 | 6226909 | 6228500 | a | 0 | ... | | chr21 | 3037884 | 3046993 | a | 0 | ... | | chr21 | 3037884 | 3046993 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 12 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 4 chr21 205242 215148 - 1485445 5 chr21 205242 215148 - 2555071 2 chr21 2770218 2771642 - 102855 3 chr21 2770218 2771642 - 266243 0 chr21 2874496 2882948 - 104278 1 chr21 2874496 2882948 - 154937 10 chr21 3037884 3046993 - 163388 11 chr21 3037884 3046993 - 267666 8 chr21 6226909 6228500 - 691250 9 chr21 6226909 6228500 - 1627926 6 chr21 8820710 8827256 - 168332 7 chr21 8820710 8827256 - 964285 df2 Chromosome Start End Strand Distance 0 chr21 205242 215148 - 1485445 1 chr21 205242 215148 - 2555071 3 chr21 2770218 2771642 - 102855 4 chr21 2770218 2771642 - 266243 5 chr21 2874496 2882948 - 104278 6 chr21 2874496 2882948 - 154937 7 chr21 3037884 3046993 - 163388 8 chr21 3037884 3046993 - 267666 11 chr21 6226909 6228500 - 691250 12 chr21 6226909 6228500 - 1627926 15 chr21 8820710 8827256 - 168332 16 chr21 8820710 8827256 - 964285 Actual Chromosome Start End Strand Distance 0 chr21 205242 215148 - 1485445 1 chr21 205242 215148 - 2555071 2 chr21 2770218 2771642 - 102855 3 chr21 2770218 2771642 - 266243 4 chr21 2874496 2882948 - 104278 5 chr21 2874496 2882948 - 154937 6 chr21 3037884 3046993 - 163388 7 chr21 3037884 3046993 - 267666 8 chr21 6226909 6228500 - 691250 9 chr21 6226909 6228500 - 1627926 10 chr21 8820710 8827256 - 168332 11 chr21 8820710 8827256 - 964285 Expected Chromosome Start End Strand Distance 0 chr21 205242 215148 - 1485445 1 chr21 205242 215148 - 2555071 2 chr21 2770218 2771642 - 102855 3 chr21 2770218 2771642 - 266243 4 chr21 2874496 2882948 - 104278 5 chr21 2874496 2882948 - 154937 6 chr21 3037884 3046993 - 163388 7 chr21 3037884 3046993 - 267666 8 chr21 6226909 6228500 - 691250 9 chr21 6226909 6228500 - 1627926 10 chr21 8820710 8827256 - 168332 11 chr21 8820710 8827256 - 964285 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=12, step=1) Expected index RangeIndex(start=0, stop=12, step=1) index equal [ True True True True True True True True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpj6t45p86/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpj6t45p86/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 625035 630284 + 3257930 1 chr1 625035 630284 + 3440236 3 chr1 5762870 5772616 + 167148 4 chr1 5762870 5772616 + 545530 5 chr10 1633150 1642896 + 1857127 6 chr10 3544982 3554728 - 2465524 9 chr20 1704320 1709193 - 8030909 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 5762870 | 5772616 | a | 0 | ... | | chr1 | 5762870 | 5772616 | a | 0 | ... | | chr1 | 625035 | 630284 | a | 0 | ... | | chr1 | 625035 | 630284 | a | 0 | ... | | chr10 | 1633150 | 1642896 | a | 0 | ... | | chr10 | 3544982 | 3554728 | a | 0 | ... | | chr20 | 1704320 | 1709193 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 7 rows and 12 columns from 3 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 2 chr1 625035 630284 + 3257930 3 chr1 625035 630284 + 3440236 4 chr10 1633150 1642896 + 1857127 6 chr20 1704320 1709193 - 8030909 5 chr10 3544982 3554728 - 2465524 0 chr1 5762870 5772616 + 167148 1 chr1 5762870 5772616 + 545530 df2 Chromosome Start End Strand Distance 0 chr1 625035 630284 + 3257930 1 chr1 625035 630284 + 3440236 5 chr10 1633150 1642896 + 1857127 9 chr20 1704320 1709193 - 8030909 6 chr10 3544982 3554728 - 2465524 3 chr1 5762870 5772616 + 167148 4 chr1 5762870 5772616 + 545530 Actual Chromosome Start End Strand Distance 0 chr1 625035 630284 + 3257930 1 chr1 625035 630284 + 3440236 2 chr1 5762870 5772616 + 167148 3 chr1 5762870 5772616 + 545530 4 chr10 1633150 1642896 + 1857127 5 chr10 3544982 3554728 - 2465524 6 chr20 1704320 1709193 - 8030909 Expected Chromosome Start End Strand Distance 0 chr1 625035 630284 + 3257930 1 chr1 625035 630284 + 3440236 2 chr1 5762870 5772616 + 167148 3 chr1 5762870 5772616 + 545530 4 chr10 1633150 1642896 + 1857127 5 chr10 3544982 3554728 - 2465524 6 chr20 1704320 1709193 - 8030909 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=7, step=1) Expected index RangeIndex(start=0, stop=7, step=1) index equal [ True True True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpv2ksyoxn/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpv2ksyoxn/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 625035 630284 + 3257930 1 chr1 625035 630284 + 3440236 3 chr1 5762870 5772616 + 167148 4 chr1 5762870 5772616 + 545530 5 chr10 1633150 1642896 + 1857127 6 chr10 3544982 3554728 - 2465524 9 chr20 1704320 1709193 - 8030909 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 5762870 | 5772616 | a | 0 | ... | | chr1 | 5762870 | 5772616 | a | 0 | ... | | chr1 | 625035 | 630284 | a | 0 | ... | | chr1 | 625035 | 630284 | a | 0 | ... | | chr10 | 1633150 | 1642896 | a | 0 | ... | | chr10 | 3544982 | 3554728 | a | 0 | ... | | chr20 | 1704320 | 1709193 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 7 rows and 12 columns from 3 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 2 chr1 625035 630284 + 3257930 3 chr1 625035 630284 + 3440236 4 chr10 1633150 1642896 + 1857127 6 chr20 1704320 1709193 - 8030909 5 chr10 3544982 3554728 - 2465524 0 chr1 5762870 5772616 + 167148 1 chr1 5762870 5772616 + 545530 df2 Chromosome Start End Strand Distance 0 chr1 625035 630284 + 3257930 1 chr1 625035 630284 + 3440236 5 chr10 1633150 1642896 + 1857127 9 chr20 1704320 1709193 - 8030909 6 chr10 3544982 3554728 - 2465524 3 chr1 5762870 5772616 + 167148 4 chr1 5762870 5772616 + 545530 Actual Chromosome Start End Strand Distance 0 chr1 625035 630284 + 3257930 1 chr1 625035 630284 + 3440236 2 chr1 5762870 5772616 + 167148 3 chr1 5762870 5772616 + 545530 4 chr10 1633150 1642896 + 1857127 5 chr10 3544982 3554728 - 2465524 6 chr20 1704320 1709193 - 8030909 Expected Chromosome Start End Strand Distance 0 chr1 625035 630284 + 3257930 1 chr1 625035 630284 + 3440236 2 chr1 5762870 5772616 + 167148 3 chr1 5762870 5772616 + 545530 4 chr10 1633150 1642896 + 1857127 5 chr10 3544982 3554728 - 2465524 6 chr20 1704320 1709193 - 8030909 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=7, step=1) Expected index RangeIndex(start=0, stop=7, step=1) index equal [ True True True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpgt3tm3oh/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpgt3tm3oh/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 1 chr1 1 5250 + 3882964 2 chr1 1 5250 + 4065270 3 chr1 1 9747 + 3878467 4 chr1 1 9747 + 4060773 5 chr10 1 9747 + 3490276 6 chr10 1 9747 - 1066897 9 chr20 1 4874 - 9735228 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 1 | 9747 | a | 0 | ... | | chr1 | 1 | 9747 | a | 0 | ... | | chr1 | 1 | 5250 | a | 0 | ... | | chr1 | 1 | 5250 | a | 0 | ... | | chr10 | 1 | 9747 | a | 0 | ... | | chr10 | 1 | 9747 | a | 0 | ... | | chr20 | 1 | 4874 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 7 rows and 12 columns from 3 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 6 chr20 1 4874 - 9735228 2 chr1 1 5250 + 3882964 3 chr1 1 5250 + 4065270 5 chr10 1 9747 - 1066897 4 chr10 1 9747 + 3490276 0 chr1 1 9747 + 3878467 1 chr1 1 9747 + 4060773 df2 Chromosome Start End Strand Distance 9 chr20 1 4874 - 9735228 1 chr1 1 5250 + 3882964 2 chr1 1 5250 + 4065270 6 chr10 1 9747 - 1066897 5 chr10 1 9747 + 3490276 3 chr1 1 9747 + 3878467 4 chr1 1 9747 + 4060773 Actual Chromosome Start End Strand Distance 0 chr1 1 5250 + 3882964 1 chr1 1 5250 + 4065270 2 chr1 1 9747 + 3878467 3 chr1 1 9747 + 4060773 4 chr10 1 9747 + 3490276 5 chr10 1 9747 - 1066897 6 chr20 1 4874 - 9735228 Expected Chromosome Start End Strand Distance 0 chr1 1 5250 + 3882964 1 chr1 1 5250 + 4065270 2 chr1 1 9747 + 3878467 3 chr1 1 9747 + 4060773 4 chr10 1 9747 + 3490276 5 chr10 1 9747 - 1066897 6 chr20 1 4874 - 9735228 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=7, step=1) Expected index RangeIndex(start=0, stop=7, step=1) index equal [ True True True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpyx0rc7jw/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpyx0rc7jw/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 5 chr10 1076643 1079459 + 2420564 6 chr10 3500022 3501402 - 2420564 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr10 | 1076643 | 1079459 | a | 0 | ... | | chr10 | 3500022 | 3501402 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr10 1076643 1079459 + 2420564 1 chr10 3500022 3501402 - 2420564 df2 Chromosome Start End Strand Distance 5 chr10 1076643 1079459 + 2420564 6 chr10 3500022 3501402 - 2420564 Actual Chromosome Start End Strand Distance 0 chr10 1076643 1079459 + 2420564 1 chr10 3500022 3501402 - 2420564 Expected Chromosome Start End Strand Distance 0 chr10 1076643 1079459 + 2420564 1 chr10 3500022 3501402 - 2420564 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=2, step=1) Expected index RangeIndex(start=0, stop=2, step=1) index equal [ True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp94c7njyq/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp94c7njyq/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpfzzerr11/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpfzzerr11/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpx8klgndt/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpx8klgndt/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 355833 361010 + 409219 1 chr1 355833 361010 + 2838653 2 chr17 2445390 2451504 - 6527933 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 355833 | 361010 | a | 0 | ... | | chr1 | 355833 | 361010 | a | 0 | ... | | chr17 | 2445390 | 2451504 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 3 rows and 12 columns from 2 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 355833 361010 + 409219 1 chr1 355833 361010 + 2838653 2 chr17 2445390 2451504 - 6527933 df2 Chromosome Start End Strand Distance 0 chr1 355833 361010 + 409219 1 chr1 355833 361010 + 2838653 2 chr17 2445390 2451504 - 6527933 Actual Chromosome Start End Strand Distance 0 chr1 355833 361010 + 409219 1 chr1 355833 361010 + 2838653 2 chr17 2445390 2451504 - 6527933 Expected Chromosome Start End Strand Distance 0 chr1 355833 361010 + 409219 1 chr1 355833 361010 + 2838653 2 chr17 2445390 2451504 - 6527933 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=3, step=1) Expected index RangeIndex(start=0, stop=3, step=1) index equal [ True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpqxehq1_j/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpqxehq1_j/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 355833 361010 + 2838653 1 chr1 355833 361010 + 7751993 2 chr17 2445390 2451504 - 6527933 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 355833 | 361010 | a | 0 | ... | | chr1 | 355833 | 361010 | a | 0 | ... | | chr17 | 2445390 | 2451504 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 3 rows and 12 columns from 2 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 355833 361010 + 2838653 1 chr1 355833 361010 + 7751993 2 chr17 2445390 2451504 - 6527933 df2 Chromosome Start End Strand Distance 0 chr1 355833 361010 + 2838653 1 chr1 355833 361010 + 7751993 2 chr17 2445390 2451504 - 6527933 Actual Chromosome Start End Strand Distance 0 chr1 355833 361010 + 2838653 1 chr1 355833 361010 + 7751993 2 chr17 2445390 2451504 - 6527933 Expected Chromosome Start End Strand Distance 0 chr1 355833 361010 + 2838653 1 chr1 355833 361010 + 7751993 2 chr17 2445390 2451504 - 6527933 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=3, step=1) Expected index RangeIndex(start=0, stop=3, step=1) index equal [ True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpwzfkr5cf/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpwzfkr5cf/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 355833 361010 + 350843 1 chr17 2445390 2451504 - 2440400 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 355833 | 361010 | a | 0 | ... | | chr17 | 2445390 | 2451504 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 2 rows and 12 columns from 2 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 355833 361010 + 350843 1 chr17 2445390 2451504 - 2440400 df2 Chromosome Start End Strand Distance 0 chr1 355833 361010 + 350843 1 chr17 2445390 2451504 - 2440400 Actual Chromosome Start End Strand Distance 0 chr1 355833 361010 + 350843 1 chr17 2445390 2451504 - 2440400 Expected Chromosome Start End Strand Distance 0 chr1 355833 361010 + 350843 1 chr17 2445390 2451504 - 2440400 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=2, step=1) Expected index RangeIndex(start=0, stop=2, step=1) index equal [ True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp1pwi7www/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp1pwi7www/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 355833 361010 + 350843 1 chr17 2445390 2451504 - 2440400 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 355833 | 361010 | a | 0 | ... | | chr17 | 2445390 | 2451504 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 2 rows and 12 columns from 2 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 355833 361010 + 350843 1 chr17 2445390 2451504 - 2440400 df2 Chromosome Start End Strand Distance 0 chr1 355833 361010 + 350843 1 chr17 2445390 2451504 - 2440400 Actual Chromosome Start End Strand Distance 0 chr1 355833 361010 + 350843 1 chr17 2445390 2451504 - 2440400 Expected Chromosome Start End Strand Distance 0 chr1 355833 361010 + 350843 1 chr17 2445390 2451504 - 2440400 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=2, step=1) Expected index RangeIndex(start=0, stop=2, step=1) index equal [ True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpbzjb1h6f/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpbzjb1h6f/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 355833 361010 + 350843 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 355833 | 361010 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 355833 361010 + 350843 df2 Chromosome Start End Strand Distance 0 chr1 355833 361010 + 350843 Actual Chromosome Start End Strand Distance 0 chr1 355833 361010 + 350843 Expected Chromosome Start End Strand Distance 0 chr1 355833 361010 + 350843 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=1, step=1) Expected index RangeIndex(start=0, stop=1, step=1) index equal [ True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmprx74d3q3/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmprx74d3q3/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 355833 355834 + 350843 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 355833 | 355834 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 355833 355834 + 350843 df2 Chromosome Start End Strand Distance 0 chr1 355833 355834 + 350843 Actual Chromosome Start End Strand Distance 0 chr1 355833 355834 + 350843 Expected Chromosome Start End Strand Distance 0 chr1 355833 355834 + 350843 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=1, step=1) Expected index RangeIndex(start=0, stop=1, step=1) index equal [ True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpj3nq_z6m/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpj3nq_z6m/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmppakzb5jp/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmppakzb5jp/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 2526992 2531724 - 4087739 1 chr1 2526992 2531724 - 6732014 2 chr1 3021530 3031530 + 478515 3 chr1 5093845 5099436 - 1520027 4 chr1 5093845 5099436 - 4164302 5 chr1 5230930 5233528 + 1718074 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 3021530 | 3031530 | a | 0 | ... | | chr1 | 5230930 | 5233528 | a | 0 | ... | | chr1 | 5093845 | 5099436 | a | 0 | ... | | chr1 | 5093845 | 5099436 | a | 0 | ... | | chr1 | 2526992 | 2531724 | a | 0 | ... | | chr1 | 2526992 | 2531724 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 6 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 4 chr1 2526992 2531724 - 4087739 5 chr1 2526992 2531724 - 6732014 0 chr1 3021530 3031530 + 478515 2 chr1 5093845 5099436 - 1520027 3 chr1 5093845 5099436 - 4164302 1 chr1 5230930 5233528 + 1718074 df2 Chromosome Start End Strand Distance 0 chr1 2526992 2531724 - 4087739 1 chr1 2526992 2531724 - 6732014 2 chr1 3021530 3031530 + 478515 3 chr1 5093845 5099436 - 1520027 4 chr1 5093845 5099436 - 4164302 5 chr1 5230930 5233528 + 1718074 Actual Chromosome Start End Strand Distance 0 chr1 2526992 2531724 - 4087739 1 chr1 2526992 2531724 - 6732014 2 chr1 3021530 3031530 + 478515 3 chr1 5093845 5099436 - 1520027 4 chr1 5093845 5099436 - 4164302 5 chr1 5230930 5233528 + 1718074 Expected Chromosome Start End Strand Distance 0 chr1 2526992 2531724 - 4087739 1 chr1 2526992 2531724 - 6732014 2 chr1 3021530 3031530 + 478515 3 chr1 5093845 5099436 - 1520027 4 chr1 5093845 5099436 - 4164302 5 chr1 5230930 5233528 + 1718074 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=6, step=1) Expected index RangeIndex(start=0, stop=6, step=1) index equal [ True True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmph7jvjcc3/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmph7jvjcc3/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 2526992 2531724 - 4087739 1 chr1 2526992 2531724 - 6732014 2 chr1 3021530 3031530 + 478515 3 chr1 5093845 5099436 - 1520027 4 chr1 5093845 5099436 - 4164302 5 chr1 5230930 5233528 + 1720886 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 3021530 | 3031530 | a | 0 | ... | | chr1 | 5230930 | 5233528 | a | 0 | ... | | chr1 | 5093845 | 5099436 | a | 0 | ... | | chr1 | 5093845 | 5099436 | a | 0 | ... | | chr1 | 2526992 | 2531724 | a | 0 | ... | | chr1 | 2526992 | 2531724 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 6 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 4 chr1 2526992 2531724 - 4087739 5 chr1 2526992 2531724 - 6732014 0 chr1 3021530 3031530 + 478515 2 chr1 5093845 5099436 - 1520027 3 chr1 5093845 5099436 - 4164302 1 chr1 5230930 5233528 + 1720886 df2 Chromosome Start End Strand Distance 0 chr1 2526992 2531724 - 4087739 1 chr1 2526992 2531724 - 6732014 2 chr1 3021530 3031530 + 478515 3 chr1 5093845 5099436 - 1520027 4 chr1 5093845 5099436 - 4164302 5 chr1 5230930 5233528 + 1720886 Actual Chromosome Start End Strand Distance 0 chr1 2526992 2531724 - 4087739 1 chr1 2526992 2531724 - 6732014 2 chr1 3021530 3031530 + 478515 3 chr1 5093845 5099436 - 1520027 4 chr1 5093845 5099436 - 4164302 5 chr1 5230930 5233528 + 1720886 Expected Chromosome Start End Strand Distance 0 chr1 2526992 2531724 - 4087739 1 chr1 2526992 2531724 - 6732014 2 chr1 3021530 3031530 + 478515 3 chr1 5093845 5099436 - 1520027 4 chr1 5093845 5099436 - 4164302 5 chr1 5230930 5233528 + 1720886 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=6, step=1) Expected index RangeIndex(start=0, stop=6, step=1) index equal [ True True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp3ryb4j_r/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp3ryb4j_r/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 1 chr1 3021530 3031530 + 478515 2 chr1 3021530 3031530 + 3587933 4 chr1 5230930 5233528 + 1385935 5 chr1 5230930 5233528 + 1720886 11 chrM 10000000 10006509 + 9907671 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 3021530 | 3031530 | a | 0 | ... | | chr1 | 3021530 | 3031530 | a | 0 | ... | | chr1 | 5230930 | 5233528 | a | 0 | ... | | chr1 | 5230930 | 5233528 | a | 0 | ... | | chrM | 10000000 | 10006509 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 5 rows and 12 columns from 2 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 3021530 3031530 + 478515 1 chr1 3021530 3031530 + 3587933 2 chr1 5230930 5233528 + 1385935 3 chr1 5230930 5233528 + 1720886 4 chrM 10000000 10006509 + 9907671 df2 Chromosome Start End Strand Distance 1 chr1 3021530 3031530 + 478515 2 chr1 3021530 3031530 + 3587933 4 chr1 5230930 5233528 + 1385935 5 chr1 5230930 5233528 + 1720886 11 chrM 10000000 10006509 + 9907671 Actual Chromosome Start End Strand Distance 0 chr1 3021530 3031530 + 478515 1 chr1 3021530 3031530 + 3587933 2 chr1 5230930 5233528 + 1385935 3 chr1 5230930 5233528 + 1720886 4 chrM 10000000 10006509 + 9907671 Expected Chromosome Start End Strand Distance 0 chr1 3021530 3031530 + 478515 1 chr1 3021530 3031530 + 3587933 2 chr1 5230930 5233528 + 1385935 3 chr1 5230930 5233528 + 1720886 4 chrM 10000000 10006509 + 9907671 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=5, step=1) Expected index RangeIndex(start=0, stop=5, step=1) index equal [ True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpp92lh0ye/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpp92lh0ye/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpaqhw6ms6/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpaqhw6ms6/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpi2k6hp_u/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpi2k6hp_u/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 9 chr2 9275257 9278721 - 9275256 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr2 | 9275257 | 9278721 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr2 9275257 9278721 - 9275256 df2 Chromosome Start End Strand Distance 9 chr2 9275257 9278721 - 9275256 Actual Chromosome Start End Strand Distance 0 chr2 9275257 9278721 - 9275256 Expected Chromosome Start End Strand Distance 0 chr2 9275257 9278721 - 9275256 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=1, step=1) Expected index RangeIndex(start=0, stop=1, step=1) index equal [ True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpc_vxnpx5/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpc_vxnpx5/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr2 1 2 + 9275256 1 chr2 1 2 + 9275256 2 chr2 1 2 + 9275256 3 chr2 1 2 - 1 4 chr2 1 2 - 1 8 chr2 2 8195 + 1 9 chr2 2 8195 + 9267063 10 chr2 9275257 9278721 - 9267063 11 chr2 9275257 9278721 - 9275256 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr2 | 2 | 8195 | a | 0 | ... | | chr2 | 2 | 8195 | a | 0 | ... | | chr2 | 1 | 2 | a | 0 | ... | | chr2 | 1 | 2 | a | 0 | ... | | ... | ... | ... | ... | ... | ... | | chr2 | 1 | 2 | a | 0 | ... | | chr2 | 1 | 2 | a | 0 | ... | | chr2 | 9275257 | 9278721 | a | 0 | ... | | chr2 | 9275257 | 9278721 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 9 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 5 chr2 1 2 - 1 6 chr2 1 2 - 1 2 chr2 1 2 + 9275256 3 chr2 1 2 + 9275256 4 chr2 1 2 + 9275256 0 chr2 2 8195 + 1 1 chr2 2 8195 + 9267063 7 chr2 9275257 9278721 - 9267063 8 chr2 9275257 9278721 - 9275256 df2 Chromosome Start End Strand Distance 3 chr2 1 2 - 1 4 chr2 1 2 - 1 0 chr2 1 2 + 9275256 1 chr2 1 2 + 9275256 2 chr2 1 2 + 9275256 8 chr2 2 8195 + 1 9 chr2 2 8195 + 9267063 10 chr2 9275257 9278721 - 9267063 11 chr2 9275257 9278721 - 9275256 Actual Chromosome Start End Strand Distance 0 chr2 1 2 + 9275256 1 chr2 1 2 + 9275256 2 chr2 1 2 + 9275256 3 chr2 1 2 - 1 4 chr2 1 2 - 1 5 chr2 2 8195 + 1 6 chr2 2 8195 + 9267063 7 chr2 9275257 9278721 - 9267063 8 chr2 9275257 9278721 - 9275256 Expected Chromosome Start End Strand Distance 0 chr2 1 2 + 9275256 1 chr2 1 2 + 9275256 2 chr2 1 2 + 9275256 3 chr2 1 2 - 1 4 chr2 1 2 - 1 5 chr2 2 8195 + 1 6 chr2 2 8195 + 9267063 7 chr2 9275257 9278721 - 9267063 8 chr2 9275257 9278721 - 9275256 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=9, step=1) Expected index RangeIndex(start=0, stop=9, step=1) index equal [ True True True True True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp4tubp0v9/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp4tubp0v9/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 9600731 9604271 - 6482579 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 9600731 | 9604271 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 9600731 9604271 - 6482579 df2 Chromosome Start End Strand Distance 0 chr1 9600731 9604271 - 6482579 Actual Chromosome Start End Strand Distance 0 chr1 9600731 9604271 - 6482579 Expected Chromosome Start End Strand Distance 0 chr1 9600731 9604271 - 6482579 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=1, step=1) Expected index RangeIndex(start=0, stop=1, step=1) index equal [ True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp02asiynf/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp02asiynf/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 9600731 9604271 - 7157233 1 chr1 9600731 9604271 - 9139680 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 9600731 | 9604271 | a | 0 | ... | | chr1 | 9600731 | 9604271 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 9600731 9604271 - 7157233 1 chr1 9600731 9604271 - 9139680 df2 Chromosome Start End Strand Distance 0 chr1 9600731 9604271 - 7157233 1 chr1 9600731 9604271 - 9139680 Actual Chromosome Start End Strand Distance 0 chr1 9600731 9604271 - 7157233 1 chr1 9600731 9604271 - 9139680 Expected Chromosome Start End Strand Distance 0 chr1 9600731 9604271 - 7157233 1 chr1 9600731 9604271 - 9139680 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=2, step=1) Expected index RangeIndex(start=0, stop=2, step=1) index equal [ True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpq7f9unze/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpq7f9unze/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 9600731 9604271 - 9139680 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 9600731 | 9604271 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 9600731 9604271 - 9139680 df2 Chromosome Start End Strand Distance 0 chr1 9600731 9604271 - 9139680 Actual Chromosome Start End Strand Distance 0 chr1 9600731 9604271 - 9139680 Expected Chromosome Start End Strand Distance 0 chr1 9600731 9604271 - 9139680 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=1, step=1) Expected index RangeIndex(start=0, stop=1, step=1) index equal [ True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpyyt0419l/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpyyt0419l/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp4sxx9dnm/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp4sxx9dnm/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 3 chr1 9600731 9604271 - 9600730 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 9600731 | 9604271 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 9600731 9604271 - 9600730 df2 Chromosome Start End Strand Distance 3 chr1 9600731 9604271 - 9600730 Actual Chromosome Start End Strand Distance 0 chr1 9600731 9604271 - 9600730 Expected Chromosome Start End Strand Distance 0 chr1 9600731 9604271 - 9600730 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=1, step=1) Expected index RangeIndex(start=0, stop=1, step=1) index equal [ True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp69kh1uhy/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp69kh1uhy/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 3 chr1 9600731 9604271 - 9597191 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 9600731 | 9604271 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 9600731 9604271 - 9597191 df2 Chromosome Start End Strand Distance 3 chr1 9600731 9604271 - 9597191 Actual Chromosome Start End Strand Distance 0 chr1 9600731 9604271 - 9597191 Expected Chromosome Start End Strand Distance 0 chr1 9600731 9604271 - 9597191 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=1, step=1) Expected index RangeIndex(start=0, stop=1, step=1) index equal [ True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpp8urmjny/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpp8urmjny/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpbr3qf3bd/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpbr3qf3bd/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 1057651 1065440 + 3360137 1 chr1 1057651 1065440 + 3618193 2 chr1 2537842 2545247 + 1880330 3 chr1 2537842 2545247 + 2138386 4 chr1 3130923 3138912 - 528569 5 chr1 3130923 3138912 - 5461452 6 chr1 3782546 3788937 - 111961 7 chr1 3782546 3788937 - 4811427 8 chr1 4232877 4233955 + 191622 9 chr1 4232877 4233955 + 449678 10 chr1 4349898 4354666 - 679313 11 chr1 4349898 4354666 - 4245698 12 chr1 7044992 7049342 - 1551022 13 chr1 7044992 7049342 - 3374407 14 chr1 7156751 7161366 - 1438998 15 chr1 7156751 7161366 - 3486166 16 chr1 7646517 7654770 + 1443566 17 chr1 7646517 7654770 + 1742288 18 chr1 8237240 8238046 + 860290 19 chr1 8237240 8238046 + 2333011 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 4232877 | 4233955 | a | 0 | ... | | chr1 | 4232877 | 4233955 | a | 0 | ... | | chr1 | 1057651 | 1065440 | a | 0 | ... | | chr1 | 1057651 | 1065440 | a | 0 | ... | | ... | ... | ... | ... | ... | ... | | chr1 | 7044992 | 7049342 | a | 0 | ... | | chr1 | 7044992 | 7049342 | a | 0 | ... | | chr1 | 3130923 | 3138912 | a | 0 | ... | | chr1 | 3130923 | 3138912 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 20 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 2 chr1 1057651 1065440 + 3360137 3 chr1 1057651 1065440 + 3618193 6 chr1 2537842 2545247 + 1880330 7 chr1 2537842 2545247 + 2138386 18 chr1 3130923 3138912 - 528569 19 chr1 3130923 3138912 - 5461452 10 chr1 3782546 3788937 - 111961 11 chr1 3782546 3788937 - 4811427 0 chr1 4232877 4233955 + 191622 1 chr1 4232877 4233955 + 449678 14 chr1 4349898 4354666 - 679313 15 chr1 4349898 4354666 - 4245698 16 chr1 7044992 7049342 - 1551022 17 chr1 7044992 7049342 - 3374407 12 chr1 7156751 7161366 - 1438998 13 chr1 7156751 7161366 - 3486166 4 chr1 7646517 7654770 + 1443566 5 chr1 7646517 7654770 + 1742288 8 chr1 8237240 8238046 + 860290 9 chr1 8237240 8238046 + 2333011 df2 Chromosome Start End Strand Distance 0 chr1 1057651 1065440 + 3360137 1 chr1 1057651 1065440 + 3618193 2 chr1 2537842 2545247 + 1880330 3 chr1 2537842 2545247 + 2138386 4 chr1 3130923 3138912 - 528569 5 chr1 3130923 3138912 - 5461452 6 chr1 3782546 3788937 - 111961 7 chr1 3782546 3788937 - 4811427 8 chr1 4232877 4233955 + 191622 9 chr1 4232877 4233955 + 449678 10 chr1 4349898 4354666 - 679313 11 chr1 4349898 4354666 - 4245698 12 chr1 7044992 7049342 - 1551022 13 chr1 7044992 7049342 - 3374407 14 chr1 7156751 7161366 - 1438998 15 chr1 7156751 7161366 - 3486166 16 chr1 7646517 7654770 + 1443566 17 chr1 7646517 7654770 + 1742288 18 chr1 8237240 8238046 + 860290 19 chr1 8237240 8238046 + 2333011 Actual Chromosome Start End Strand Distance 0 chr1 1057651 1065440 + 3360137 1 chr1 1057651 1065440 + 3618193 2 chr1 2537842 2545247 + 1880330 3 chr1 2537842 2545247 + 2138386 4 chr1 3130923 3138912 - 528569 5 chr1 3130923 3138912 - 5461452 6 chr1 3782546 3788937 - 111961 7 chr1 3782546 3788937 - 4811427 8 chr1 4232877 4233955 + 191622 9 chr1 4232877 4233955 + 449678 10 chr1 4349898 4354666 - 679313 11 chr1 4349898 4354666 - 4245698 12 chr1 7044992 7049342 - 1551022 13 chr1 7044992 7049342 - 3374407 14 chr1 7156751 7161366 - 1438998 15 chr1 7156751 7161366 - 3486166 16 chr1 7646517 7654770 + 1443566 17 chr1 7646517 7654770 + 1742288 18 chr1 8237240 8238046 + 860290 19 chr1 8237240 8238046 + 2333011 Expected Chromosome Start End Strand Distance 0 chr1 1057651 1065440 + 3360137 1 chr1 1057651 1065440 + 3618193 2 chr1 2537842 2545247 + 1880330 3 chr1 2537842 2545247 + 2138386 4 chr1 3130923 3138912 - 528569 5 chr1 3130923 3138912 - 5461452 6 chr1 3782546 3788937 - 111961 7 chr1 3782546 3788937 - 4811427 8 chr1 4232877 4233955 + 191622 9 chr1 4232877 4233955 + 449678 10 chr1 4349898 4354666 - 679313 11 chr1 4349898 4354666 - 4245698 12 chr1 7044992 7049342 - 1551022 13 chr1 7044992 7049342 - 3374407 14 chr1 7156751 7161366 - 1438998 15 chr1 7156751 7161366 - 3486166 16 chr1 7646517 7654770 + 1443566 17 chr1 7646517 7654770 + 1742288 18 chr1 8237240 8238046 + 860290 19 chr1 8237240 8238046 + 2333011 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=20, step=1) Expected index RangeIndex(start=0, stop=20, step=1) index equal [ True True True True True True True True True True True True True True True True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpnk78j9bj/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpnk78j9bj/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 1 2 + 1077 1 chr1 1 2 + 1077 2 chr1 1 2 + 1077 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 1 | 2 | a | 0 | ... | | chr1 | 1 | 2 | a | 0 | ... | | chr1 | 1 | 2 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 3 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 1 2 + 1077 1 chr1 1 2 + 1077 2 chr1 1 2 + 1077 df2 Chromosome Start End Strand Distance 0 chr1 1 2 + 1077 1 chr1 1 2 + 1077 2 chr1 1 2 + 1077 Actual Chromosome Start End Strand Distance 0 chr1 1 2 + 1077 1 chr1 1 2 + 1077 2 chr1 1 2 + 1077 Expected Chromosome Start End Strand Distance 0 chr1 1 2 + 1077 1 chr1 1 2 + 1077 2 chr1 1 2 + 1077 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=3, step=1) Expected index RangeIndex(start=0, stop=3, step=1) index equal [ True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpycgpcbom/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpycgpcbom/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 1 2 + 4349 1 chr1 1 2 + 6390 2 chr1 1 2 + 4349 3 chr1 1 2 + 6390 4 chr1 1 2 + 4349 5 chr1 1 2 + 6390 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 1 | 2 | a | 0 | ... | | chr1 | 1 | 2 | a | 0 | ... | | chr1 | 1 | 2 | a | 0 | ... | | chr1 | 1 | 2 | a | 0 | ... | | chr1 | 1 | 2 | a | 0 | ... | | chr1 | 1 | 2 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 6 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 1 2 + 4349 2 chr1 1 2 + 4349 4 chr1 1 2 + 4349 1 chr1 1 2 + 6390 3 chr1 1 2 + 6390 5 chr1 1 2 + 6390 df2 Chromosome Start End Strand Distance 0 chr1 1 2 + 4349 2 chr1 1 2 + 4349 4 chr1 1 2 + 4349 1 chr1 1 2 + 6390 3 chr1 1 2 + 6390 5 chr1 1 2 + 6390 Actual Chromosome Start End Strand Distance 0 chr1 1 2 + 4349 1 chr1 1 2 + 4349 2 chr1 1 2 + 4349 3 chr1 1 2 + 6390 4 chr1 1 2 + 6390 5 chr1 1 2 + 6390 Expected Chromosome Start End Strand Distance 0 chr1 1 2 + 4349 1 chr1 1 2 + 4349 2 chr1 1 2 + 4349 3 chr1 1 2 + 6390 4 chr1 1 2 + 6390 5 chr1 1 2 + 6390 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=6, step=1) Expected index RangeIndex(start=0, stop=6, step=1) index equal [ True True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpy90c9b9_/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpy90c9b9_/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 1 2 + 4349 1 chr1 1 2 + 6390 2 chr1 1 2 + 4349 3 chr1 1 2 + 6390 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 1 | 2 | a | 0 | ... | | chr1 | 1 | 2 | a | 0 | ... | | chr1 | 1 | 2 | a | 0 | ... | | chr1 | 1 | 2 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 4 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 1 2 + 4349 2 chr1 1 2 + 4349 1 chr1 1 2 + 6390 3 chr1 1 2 + 6390 df2 Chromosome Start End Strand Distance 0 chr1 1 2 + 4349 2 chr1 1 2 + 4349 1 chr1 1 2 + 6390 3 chr1 1 2 + 6390 Actual Chromosome Start End Strand Distance 0 chr1 1 2 + 4349 1 chr1 1 2 + 4349 2 chr1 1 2 + 6390 3 chr1 1 2 + 6390 Expected Chromosome Start End Strand Distance 0 chr1 1 2 + 4349 1 chr1 1 2 + 4349 2 chr1 1 2 + 6390 3 chr1 1 2 + 6390 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=4, step=1) Expected index RangeIndex(start=0, stop=4, step=1) index equal [ True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpyuverq07/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpyuverq07/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp_e5s7ked/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp_e5s7ked/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp1uan_ixu/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp1uan_ixu/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpa600hsex/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpa600hsex/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 1829345 1834615 - 1523364 1 chr1 2600862 2605724 + 2482260 2 chr1 5481710 5490706 - 5175729 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 2600862 | 2605724 | a | 0 | ... | | chr1 | 5481710 | 5490706 | a | 0 | ... | | chr1 | 1829345 | 1834615 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 3 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 2 chr1 1829345 1834615 - 1523364 0 chr1 2600862 2605724 + 2482260 1 chr1 5481710 5490706 - 5175729 df2 Chromosome Start End Strand Distance 0 chr1 1829345 1834615 - 1523364 1 chr1 2600862 2605724 + 2482260 2 chr1 5481710 5490706 - 5175729 Actual Chromosome Start End Strand Distance 0 chr1 1829345 1834615 - 1523364 1 chr1 2600862 2605724 + 2482260 2 chr1 5481710 5490706 - 5175729 Expected Chromosome Start End Strand Distance 0 chr1 1829345 1834615 - 1523364 1 chr1 2600862 2605724 + 2482260 2 chr1 5481710 5490706 - 5175729 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=3, step=1) Expected index RangeIndex(start=0, stop=3, step=1) index equal [ True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpmwnmtiqr/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpmwnmtiqr/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpy_gcbj0z/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpy_gcbj0z/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp7sn0kgth/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp7sn0kgth/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp_0wwvx3z/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp_0wwvx3z/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp2t83ux_k/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp2t83ux_k/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmphk285rdh/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmphk285rdh/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 1524761 1526818 - 6503 1 chr1 1524761 1526818 - 805298 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 1524761 | 1526818 | a | 0 | ... | | chr1 | 1524761 | 1526818 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 1524761 1526818 - 6503 1 chr1 1524761 1526818 - 805298 df2 Chromosome Start End Strand Distance 0 chr1 1524761 1526818 - 6503 1 chr1 1524761 1526818 - 805298 Actual Chromosome Start End Strand Distance 0 chr1 1524761 1526818 - 6503 1 chr1 1524761 1526818 - 805298 Expected Chromosome Start End Strand Distance 0 chr1 1524761 1526818 - 6503 1 chr1 1524761 1526818 - 805298 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=2, step=1) Expected index RangeIndex(start=0, stop=2, step=1) index equal [ True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp315l40k6/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp315l40k6/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpsnh6zkcs/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpsnh6zkcs/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpjgigwfvd/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpjgigwfvd/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpnpyyvg5s/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpnpyyvg5s/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp8pv13w4w/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp8pv13w4w/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp_jqfjpeg/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp_jqfjpeg/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpu660f542/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpu660f542/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 5884404 5884831 + 2118323 1 chr1 5884404 5884831 + 2771159 2 chr1 5884404 5888405 + 2114749 3 chr1 5884404 5888405 + 2767585 5 chr1 5884404 5894217 + 2108937 6 chr1 5884404 5894217 + 2761773 7 chr12 1912487 1917287 + 1719063 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 5884404 | 5884831 | a | 0 | ... | | chr1 | 5884404 | 5884831 | a | 0 | ... | | chr1 | 5884404 | 5894217 | a | 0 | ... | | chr1 | 5884404 | 5894217 | a | 0 | ... | | chr1 | 5884404 | 5888405 | a | 0 | ... | | chr1 | 5884404 | 5888405 | a | 0 | ... | | chr12 | 1912487 | 1917287 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 7 rows and 12 columns from 2 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 6 chr12 1912487 1917287 + 1719063 0 chr1 5884404 5884831 + 2118323 1 chr1 5884404 5884831 + 2771159 4 chr1 5884404 5888405 + 2114749 5 chr1 5884404 5888405 + 2767585 2 chr1 5884404 5894217 + 2108937 3 chr1 5884404 5894217 + 2761773 df2 Chromosome Start End Strand Distance 7 chr12 1912487 1917287 + 1719063 0 chr1 5884404 5884831 + 2118323 1 chr1 5884404 5884831 + 2771159 2 chr1 5884404 5888405 + 2114749 3 chr1 5884404 5888405 + 2767585 5 chr1 5884404 5894217 + 2108937 6 chr1 5884404 5894217 + 2761773 Actual Chromosome Start End Strand Distance 0 chr1 5884404 5884831 + 2118323 1 chr1 5884404 5884831 + 2771159 2 chr1 5884404 5888405 + 2114749 3 chr1 5884404 5888405 + 2767585 4 chr1 5884404 5894217 + 2108937 5 chr1 5884404 5894217 + 2761773 6 chr12 1912487 1917287 + 1719063 Expected Chromosome Start End Strand Distance 0 chr1 5884404 5884831 + 2118323 1 chr1 5884404 5884831 + 2771159 2 chr1 5884404 5888405 + 2114749 3 chr1 5884404 5888405 + 2767585 4 chr1 5884404 5894217 + 2108937 5 chr1 5884404 5894217 + 2761773 6 chr12 1912487 1917287 + 1719063 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=7, step=1) Expected index RangeIndex(start=0, stop=7, step=1) index equal [ True True True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpp33nzkpw/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpp33nzkpw/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 5884404 5884405 + 5884403 1 chr1 5884404 5884405 + 5884403 2 chr1 5884404 5884405 + 5884403 3 chr1 5884404 5884409 - 5884403 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 5884404 | 5884405 | a | 0 | ... | | chr1 | 5884404 | 5884405 | a | 0 | ... | | chr1 | 5884404 | 5884405 | a | 0 | ... | | chr1 | 5884404 | 5884409 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 4 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 5884404 5884405 + 5884403 1 chr1 5884404 5884405 + 5884403 2 chr1 5884404 5884405 + 5884403 3 chr1 5884404 5884409 - 5884403 df2 Chromosome Start End Strand Distance 0 chr1 5884404 5884405 + 5884403 1 chr1 5884404 5884405 + 5884403 2 chr1 5884404 5884405 + 5884403 3 chr1 5884404 5884409 - 5884403 Actual Chromosome Start End Strand Distance 0 chr1 5884404 5884405 + 5884403 1 chr1 5884404 5884405 + 5884403 2 chr1 5884404 5884405 + 5884403 3 chr1 5884404 5884409 - 5884403 Expected Chromosome Start End Strand Distance 0 chr1 5884404 5884405 + 5884403 1 chr1 5884404 5884405 + 5884403 2 chr1 5884404 5884405 + 5884403 3 chr1 5884404 5884409 - 5884403 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=4, step=1) Expected index RangeIndex(start=0, stop=4, step=1) index equal [ True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp7gvcfz8m/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp7gvcfz8m/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp0tskq64_/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp0tskq64_/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpdx5nhi9m/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpdx5nhi9m/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpambri91i/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpambri91i/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpblgutmzo/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpblgutmzo/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpud01vya7/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpud01vya7/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 920267 927082 - 2691821 1 chr1 920267 927082 - 4347554 2 chr1 4310882 4315052 + 624093 3 chr1 4310882 4315052 + 2598439 4 chr1 4986162 4996162 + 1299373 5 chr1 4986162 4996162 + 3273719 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 4310882 | 4315052 | a | 0 | ... | | chr1 | 4310882 | 4315052 | a | 0 | ... | | chr1 | 4986162 | 4996162 | a | 0 | ... | | chr1 | 4986162 | 4996162 | a | 0 | ... | | chr1 | 920267 | 927082 | a | 0 | ... | | chr1 | 920267 | 927082 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 6 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 4 chr1 920267 927082 - 2691821 5 chr1 920267 927082 - 4347554 0 chr1 4310882 4315052 + 624093 1 chr1 4310882 4315052 + 2598439 2 chr1 4986162 4996162 + 1299373 3 chr1 4986162 4996162 + 3273719 df2 Chromosome Start End Strand Distance 0 chr1 920267 927082 - 2691821 1 chr1 920267 927082 - 4347554 2 chr1 4310882 4315052 + 624093 3 chr1 4310882 4315052 + 2598439 4 chr1 4986162 4996162 + 1299373 5 chr1 4986162 4996162 + 3273719 Actual Chromosome Start End Strand Distance 0 chr1 920267 927082 - 2691821 1 chr1 920267 927082 - 4347554 2 chr1 4310882 4315052 + 624093 3 chr1 4310882 4315052 + 2598439 4 chr1 4986162 4996162 + 1299373 5 chr1 4986162 4996162 + 3273719 Expected Chromosome Start End Strand Distance 0 chr1 920267 927082 - 2691821 1 chr1 920267 927082 - 4347554 2 chr1 4310882 4315052 + 624093 3 chr1 4310882 4315052 + 2598439 4 chr1 4986162 4996162 + 1299373 5 chr1 4986162 4996162 + 3273719 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=6, step=1) Expected index RangeIndex(start=0, stop=6, step=1) index equal [ True True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpsdhopeiq/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpsdhopeiq/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 920267 927082 - 2691821 1 chr1 920267 927082 - 4347554 2 chr1 4310882 4315052 + 624093 3 chr1 4310882 4315052 + 2598439 4 chr1 4986162 4996162 + 1299373 5 chr1 4986162 4996162 + 3273719 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 4310882 | 4315052 | a | 0 | ... | | chr1 | 4310882 | 4315052 | a | 0 | ... | | chr1 | 4986162 | 4996162 | a | 0 | ... | | chr1 | 4986162 | 4996162 | a | 0 | ... | | chr1 | 920267 | 927082 | a | 0 | ... | | chr1 | 920267 | 927082 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 6 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 4 chr1 920267 927082 - 2691821 5 chr1 920267 927082 - 4347554 0 chr1 4310882 4315052 + 624093 1 chr1 4310882 4315052 + 2598439 2 chr1 4986162 4996162 + 1299373 3 chr1 4986162 4996162 + 3273719 df2 Chromosome Start End Strand Distance 0 chr1 920267 927082 - 2691821 1 chr1 920267 927082 - 4347554 2 chr1 4310882 4315052 + 624093 3 chr1 4310882 4315052 + 2598439 4 chr1 4986162 4996162 + 1299373 5 chr1 4986162 4996162 + 3273719 Actual Chromosome Start End Strand Distance 0 chr1 920267 927082 - 2691821 1 chr1 920267 927082 - 4347554 2 chr1 4310882 4315052 + 624093 3 chr1 4310882 4315052 + 2598439 4 chr1 4986162 4996162 + 1299373 5 chr1 4986162 4996162 + 3273719 Expected Chromosome Start End Strand Distance 0 chr1 920267 927082 - 2691821 1 chr1 920267 927082 - 4347554 2 chr1 4310882 4315052 + 624093 3 chr1 4310882 4315052 + 2598439 4 chr1 4986162 4996162 + 1299373 5 chr1 4986162 4996162 + 3273719 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=6, step=1) Expected index RangeIndex(start=0, stop=6, step=1) index equal [ True True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpop1kmcik/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpop1kmcik/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 920267 920268 - 912715 1 chr1 4310882 4310883 - 4303330 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 4310882 | 4310883 | a | 0 | ... | | chr1 | 920267 | 920268 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 1 chr1 920267 920268 - 912715 0 chr1 4310882 4310883 - 4303330 df2 Chromosome Start End Strand Distance 0 chr1 920267 920268 - 912715 1 chr1 4310882 4310883 - 4303330 Actual Chromosome Start End Strand Distance 0 chr1 920267 920268 - 912715 1 chr1 4310882 4310883 - 4303330 Expected Chromosome Start End Strand Distance 0 chr1 920267 920268 - 912715 1 chr1 4310882 4310883 - 4303330 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=2, step=1) Expected index RangeIndex(start=0, stop=2, step=1) index equal [ True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpe8apoul8/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpe8apoul8/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 920267 920268 - 912715 1 chr1 4310882 4310883 - 4303330 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 4310882 | 4310883 | a | 0 | ... | | chr1 | 920267 | 920268 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 1 chr1 920267 920268 - 912715 0 chr1 4310882 4310883 - 4303330 df2 Chromosome Start End Strand Distance 0 chr1 920267 920268 - 912715 1 chr1 4310882 4310883 - 4303330 Actual Chromosome Start End Strand Distance 0 chr1 920267 920268 - 912715 1 chr1 4310882 4310883 - 4303330 Expected Chromosome Start End Strand Distance 0 chr1 920267 920268 - 912715 1 chr1 4310882 4310883 - 4303330 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=2, step=1) Expected index RangeIndex(start=0, stop=2, step=1) index equal [ True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp103y2_fu/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp103y2_fu/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp3b94sfzm/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp3b94sfzm/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp3mqx71av/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp3mqx71av/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpu3ic066s/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpu3ic066s/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 2355960 2356773 + 328943 1 chr1 2355960 2356773 + 2758573 2 chr1 2918772 2918986 + 231872 3 chr1 2918772 2918986 + 2196360 4 chr1 8010921 8019112 + 1224249 5 chr1 8010921 8019112 + 2893957 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 2355960 | 2356773 | a | 0 | ... | | chr1 | 2355960 | 2356773 | a | 0 | ... | | chr1 | 8010921 | 8019112 | a | 0 | ... | | chr1 | 8010921 | 8019112 | a | 0 | ... | | chr1 | 2918772 | 2918986 | a | 0 | ... | | chr1 | 2918772 | 2918986 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 6 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 2355960 2356773 + 328943 1 chr1 2355960 2356773 + 2758573 4 chr1 2918772 2918986 + 231872 5 chr1 2918772 2918986 + 2196360 2 chr1 8010921 8019112 + 1224249 3 chr1 8010921 8019112 + 2893957 df2 Chromosome Start End Strand Distance 0 chr1 2355960 2356773 + 328943 1 chr1 2355960 2356773 + 2758573 2 chr1 2918772 2918986 + 231872 3 chr1 2918772 2918986 + 2196360 4 chr1 8010921 8019112 + 1224249 5 chr1 8010921 8019112 + 2893957 Actual Chromosome Start End Strand Distance 0 chr1 2355960 2356773 + 328943 1 chr1 2355960 2356773 + 2758573 2 chr1 2918772 2918986 + 231872 3 chr1 2918772 2918986 + 2196360 4 chr1 8010921 8019112 + 1224249 5 chr1 8010921 8019112 + 2893957 Expected Chromosome Start End Strand Distance 0 chr1 2355960 2356773 + 328943 1 chr1 2355960 2356773 + 2758573 2 chr1 2918772 2918986 + 231872 3 chr1 2918772 2918986 + 2196360 4 chr1 8010921 8019112 + 1224249 5 chr1 8010921 8019112 + 2893957 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=6, step=1) Expected index RangeIndex(start=0, stop=6, step=1) index equal [ True True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp6____zy8/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp6____zy8/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 2355960 2356773 + 2355959 1 chr1 2355960 2356773 + 5461230 2 chr1 2918772 2918986 + 2918771 3 chr1 2918772 2918986 + 4899017 4 chr1 8010921 8019112 + 192919 5 chr1 8010921 8019112 + 8010920 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 2355960 | 2356773 | a | 0 | ... | | chr1 | 2355960 | 2356773 | a | 0 | ... | | chr1 | 8010921 | 8019112 | a | 0 | ... | | chr1 | 8010921 | 8019112 | a | 0 | ... | | chr1 | 2918772 | 2918986 | a | 0 | ... | | chr1 | 2918772 | 2918986 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 6 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 2355960 2356773 + 2355959 1 chr1 2355960 2356773 + 5461230 4 chr1 2918772 2918986 + 2918771 5 chr1 2918772 2918986 + 4899017 2 chr1 8010921 8019112 + 192919 3 chr1 8010921 8019112 + 8010920 df2 Chromosome Start End Strand Distance 0 chr1 2355960 2356773 + 2355959 1 chr1 2355960 2356773 + 5461230 2 chr1 2918772 2918986 + 2918771 3 chr1 2918772 2918986 + 4899017 4 chr1 8010921 8019112 + 192919 5 chr1 8010921 8019112 + 8010920 Actual Chromosome Start End Strand Distance 0 chr1 2355960 2356773 + 2355959 1 chr1 2355960 2356773 + 5461230 2 chr1 2918772 2918986 + 2918771 3 chr1 2918772 2918986 + 4899017 4 chr1 8010921 8019112 + 192919 5 chr1 8010921 8019112 + 8010920 Expected Chromosome Start End Strand Distance 0 chr1 2355960 2356773 + 2355959 1 chr1 2355960 2356773 + 5461230 2 chr1 2918772 2918986 + 2918771 3 chr1 2918772 2918986 + 4899017 4 chr1 8010921 8019112 + 192919 5 chr1 8010921 8019112 + 8010920 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=6, step=1) Expected index RangeIndex(start=0, stop=6, step=1) index equal [ True True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpiaoqextp/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpiaoqextp/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 2355960 2356773 + 2355959 1 chr1 2355960 2356773 + 5461230 2 chr1 2918772 2918986 + 2918771 3 chr1 2918772 2918986 + 4899017 4 chr1 8010921 8019112 + 192919 5 chr1 8010921 8019112 + 8010920 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 2355960 | 2356773 | a | 0 | ... | | chr1 | 2355960 | 2356773 | a | 0 | ... | | chr1 | 8010921 | 8019112 | a | 0 | ... | | chr1 | 8010921 | 8019112 | a | 0 | ... | | chr1 | 2918772 | 2918986 | a | 0 | ... | | chr1 | 2918772 | 2918986 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 6 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 2355960 2356773 + 2355959 1 chr1 2355960 2356773 + 5461230 4 chr1 2918772 2918986 + 2918771 5 chr1 2918772 2918986 + 4899017 2 chr1 8010921 8019112 + 192919 3 chr1 8010921 8019112 + 8010920 df2 Chromosome Start End Strand Distance 0 chr1 2355960 2356773 + 2355959 1 chr1 2355960 2356773 + 5461230 2 chr1 2918772 2918986 + 2918771 3 chr1 2918772 2918986 + 4899017 4 chr1 8010921 8019112 + 192919 5 chr1 8010921 8019112 + 8010920 Actual Chromosome Start End Strand Distance 0 chr1 2355960 2356773 + 2355959 1 chr1 2355960 2356773 + 5461230 2 chr1 2918772 2918986 + 2918771 3 chr1 2918772 2918986 + 4899017 4 chr1 8010921 8019112 + 192919 5 chr1 8010921 8019112 + 8010920 Expected Chromosome Start End Strand Distance 0 chr1 2355960 2356773 + 2355959 1 chr1 2355960 2356773 + 5461230 2 chr1 2918772 2918986 + 2918771 3 chr1 2918772 2918986 + 4899017 4 chr1 8010921 8019112 + 192919 5 chr1 8010921 8019112 + 8010920 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=6, step=1) Expected index RangeIndex(start=0, stop=6, step=1) index equal [ True True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpvzripv22/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpvzripv22/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 2355960 2356773 + 2355959 1 chr1 2355960 2356773 + 5461230 2 chr1 2918772 2918986 + 2918771 3 chr1 2918772 2918986 + 4899017 4 chr1 8010921 8019112 + 192919 5 chr1 8010921 8019112 + 8010920 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 2355960 | 2356773 | a | 0 | ... | | chr1 | 2355960 | 2356773 | a | 0 | ... | | chr1 | 8010921 | 8019112 | a | 0 | ... | | chr1 | 8010921 | 8019112 | a | 0 | ... | | chr1 | 2918772 | 2918986 | a | 0 | ... | | chr1 | 2918772 | 2918986 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 6 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 2355960 2356773 + 2355959 1 chr1 2355960 2356773 + 5461230 4 chr1 2918772 2918986 + 2918771 5 chr1 2918772 2918986 + 4899017 2 chr1 8010921 8019112 + 192919 3 chr1 8010921 8019112 + 8010920 df2 Chromosome Start End Strand Distance 0 chr1 2355960 2356773 + 2355959 1 chr1 2355960 2356773 + 5461230 2 chr1 2918772 2918986 + 2918771 3 chr1 2918772 2918986 + 4899017 4 chr1 8010921 8019112 + 192919 5 chr1 8010921 8019112 + 8010920 Actual Chromosome Start End Strand Distance 0 chr1 2355960 2356773 + 2355959 1 chr1 2355960 2356773 + 5461230 2 chr1 2918772 2918986 + 2918771 3 chr1 2918772 2918986 + 4899017 4 chr1 8010921 8019112 + 192919 5 chr1 8010921 8019112 + 8010920 Expected Chromosome Start End Strand Distance 0 chr1 2355960 2356773 + 2355959 1 chr1 2355960 2356773 + 5461230 2 chr1 2918772 2918986 + 2918771 3 chr1 2918772 2918986 + 4899017 4 chr1 8010921 8019112 + 192919 5 chr1 8010921 8019112 + 8010920 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=6, step=1) Expected index RangeIndex(start=0, stop=6, step=1) index equal [ True True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmppwwad3qc/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmppwwad3qc/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 2355960 2365163 + 2355959 1 chr1 2355960 2365163 + 5452840 2 chr1 2918772 2918773 + 2918771 3 chr1 2918772 2918773 + 4899230 4 chr1 8010921 8010922 + 192919 5 chr1 8010921 8010922 + 8010920 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 2355960 | 2365163 | a | 0 | ... | | chr1 | 2355960 | 2365163 | a | 0 | ... | | chr1 | 8010921 | 8010922 | a | 0 | ... | | chr1 | 8010921 | 8010922 | a | 0 | ... | | chr1 | 2918772 | 2918773 | a | 0 | ... | | chr1 | 2918772 | 2918773 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 6 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 2355960 2365163 + 2355959 1 chr1 2355960 2365163 + 5452840 4 chr1 2918772 2918773 + 2918771 5 chr1 2918772 2918773 + 4899230 2 chr1 8010921 8010922 + 192919 3 chr1 8010921 8010922 + 8010920 df2 Chromosome Start End Strand Distance 0 chr1 2355960 2365163 + 2355959 1 chr1 2355960 2365163 + 5452840 2 chr1 2918772 2918773 + 2918771 3 chr1 2918772 2918773 + 4899230 4 chr1 8010921 8010922 + 192919 5 chr1 8010921 8010922 + 8010920 Actual Chromosome Start End Strand Distance 0 chr1 2355960 2365163 + 2355959 1 chr1 2355960 2365163 + 5452840 2 chr1 2918772 2918773 + 2918771 3 chr1 2918772 2918773 + 4899230 4 chr1 8010921 8010922 + 192919 5 chr1 8010921 8010922 + 8010920 Expected Chromosome Start End Strand Distance 0 chr1 2355960 2365163 + 2355959 1 chr1 2355960 2365163 + 5452840 2 chr1 2918772 2918773 + 2918771 3 chr1 2918772 2918773 + 4899230 4 chr1 8010921 8010922 + 192919 5 chr1 8010921 8010922 + 8010920 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=6, step=1) Expected index RangeIndex(start=0, stop=6, step=1) index equal [ True True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpyu86w895/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpyu86w895/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 2355960 2365163 + 2355959 1 chr1 2355960 2365163 + 5452840 2 chr1 2918772 2918773 + 2918771 3 chr1 2918772 2918773 + 4899230 4 chr1 8010921 8010922 + 192919 5 chr1 8010921 8010922 + 8010920 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 2355960 | 2365163 | a | 0 | ... | | chr1 | 2355960 | 2365163 | a | 0 | ... | | chr1 | 8010921 | 8010922 | a | 0 | ... | | chr1 | 8010921 | 8010922 | a | 0 | ... | | chr1 | 2918772 | 2918773 | a | 0 | ... | | chr1 | 2918772 | 2918773 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 6 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 2355960 2365163 + 2355959 1 chr1 2355960 2365163 + 5452840 4 chr1 2918772 2918773 + 2918771 5 chr1 2918772 2918773 + 4899230 2 chr1 8010921 8010922 + 192919 3 chr1 8010921 8010922 + 8010920 df2 Chromosome Start End Strand Distance 0 chr1 2355960 2365163 + 2355959 1 chr1 2355960 2365163 + 5452840 2 chr1 2918772 2918773 + 2918771 3 chr1 2918772 2918773 + 4899230 4 chr1 8010921 8010922 + 192919 5 chr1 8010921 8010922 + 8010920 Actual Chromosome Start End Strand Distance 0 chr1 2355960 2365163 + 2355959 1 chr1 2355960 2365163 + 5452840 2 chr1 2918772 2918773 + 2918771 3 chr1 2918772 2918773 + 4899230 4 chr1 8010921 8010922 + 192919 5 chr1 8010921 8010922 + 8010920 Expected Chromosome Start End Strand Distance 0 chr1 2355960 2365163 + 2355959 1 chr1 2355960 2365163 + 5452840 2 chr1 2918772 2918773 + 2918771 3 chr1 2918772 2918773 + 4899230 4 chr1 8010921 8010922 + 192919 5 chr1 8010921 8010922 + 8010920 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=6, step=1) Expected index RangeIndex(start=0, stop=6, step=1) index equal [ True True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpn3l_j0wz/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpn3l_j0wz/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 2355960 2365163 + 2355959 1 chr1 2355960 2365163 + 5452840 2 chr1 2918772 2918773 + 2918771 3 chr1 2918772 2918773 + 4899230 4 chr1 8010921 8010922 + 192919 5 chr1 8010921 8010922 + 8010920 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 2355960 | 2365163 | a | 0 | ... | | chr1 | 2355960 | 2365163 | a | 0 | ... | | chr1 | 8010921 | 8010922 | a | 0 | ... | | chr1 | 8010921 | 8010922 | a | 0 | ... | | chr1 | 2918772 | 2918773 | a | 0 | ... | | chr1 | 2918772 | 2918773 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 6 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 2355960 2365163 + 2355959 1 chr1 2355960 2365163 + 5452840 4 chr1 2918772 2918773 + 2918771 5 chr1 2918772 2918773 + 4899230 2 chr1 8010921 8010922 + 192919 3 chr1 8010921 8010922 + 8010920 df2 Chromosome Start End Strand Distance 0 chr1 2355960 2365163 + 2355959 1 chr1 2355960 2365163 + 5452840 2 chr1 2918772 2918773 + 2918771 3 chr1 2918772 2918773 + 4899230 4 chr1 8010921 8010922 + 192919 5 chr1 8010921 8010922 + 8010920 Actual Chromosome Start End Strand Distance 0 chr1 2355960 2365163 + 2355959 1 chr1 2355960 2365163 + 5452840 2 chr1 2918772 2918773 + 2918771 3 chr1 2918772 2918773 + 4899230 4 chr1 8010921 8010922 + 192919 5 chr1 8010921 8010922 + 8010920 Expected Chromosome Start End Strand Distance 0 chr1 2355960 2365163 + 2355959 1 chr1 2355960 2365163 + 5452840 2 chr1 2918772 2918773 + 2918771 3 chr1 2918772 2918773 + 4899230 4 chr1 8010921 8010922 + 192919 5 chr1 8010921 8010922 + 8010920 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=6, step=1) Expected index RangeIndex(start=0, stop=6, step=1) index equal [ True True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmppdwzbbru/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmppdwzbbru/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 7414560 7414590 - 44037 1 chr1 7414560 7414590 - 1280845 2 chr1 9406135 9411523 - 267348 3 chr1 9406135 9411523 - 394810 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 9406135 | 9411523 | a | 0 | ... | | chr1 | 9406135 | 9411523 | a | 0 | ... | | chr1 | 7414560 | 7414590 | a | 0 | ... | | chr1 | 7414560 | 7414590 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 4 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 2 chr1 7414560 7414590 - 44037 3 chr1 7414560 7414590 - 1280845 0 chr1 9406135 9411523 - 267348 1 chr1 9406135 9411523 - 394810 df2 Chromosome Start End Strand Distance 0 chr1 7414560 7414590 - 44037 1 chr1 7414560 7414590 - 1280845 2 chr1 9406135 9411523 - 267348 3 chr1 9406135 9411523 - 394810 Actual Chromosome Start End Strand Distance 0 chr1 7414560 7414590 - 44037 1 chr1 7414560 7414590 - 1280845 2 chr1 9406135 9411523 - 267348 3 chr1 9406135 9411523 - 394810 Expected Chromosome Start End Strand Distance 0 chr1 7414560 7414590 - 44037 1 chr1 7414560 7414590 - 1280845 2 chr1 9406135 9411523 - 267348 3 chr1 9406135 9411523 - 394810 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=4, step=1) Expected index RangeIndex(start=0, stop=4, step=1) index equal [ True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp_8zibikv/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp_8zibikv/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp4n0wbb4d/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp4n0wbb4d/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpgb1uc5fs/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpgb1uc5fs/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmprh3430ea/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmprh3430ea/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpukn6aaa1/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpukn6aaa1/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpoqoy_oqw/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpoqoy_oqw/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpb48ac0qd/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpb48ac0qd/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 1288357 1295021 - 6345443 1 chr1 1288357 1295021 - 7052290 2 chr1 3334810 3340505 + 930977 3 chr1 3334810 3340505 + 1944706 4 chr18 3334810 3343222 - 670336 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 3334810 | 3340505 | a | 0 | ... | | chr1 | 3334810 | 3340505 | a | 0 | ... | | chr1 | 1288357 | 1295021 | a | 0 | ... | | chr1 | 1288357 | 1295021 | a | 0 | ... | | chr18 | 3334810 | 3343222 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 5 rows and 12 columns from 2 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 2 chr1 1288357 1295021 - 6345443 3 chr1 1288357 1295021 - 7052290 0 chr1 3334810 3340505 + 930977 1 chr1 3334810 3340505 + 1944706 4 chr18 3334810 3343222 - 670336 df2 Chromosome Start End Strand Distance 0 chr1 1288357 1295021 - 6345443 1 chr1 1288357 1295021 - 7052290 2 chr1 3334810 3340505 + 930977 3 chr1 3334810 3340505 + 1944706 4 chr18 3334810 3343222 - 670336 Actual Chromosome Start End Strand Distance 0 chr1 1288357 1295021 - 6345443 1 chr1 1288357 1295021 - 7052290 2 chr1 3334810 3340505 + 930977 3 chr1 3334810 3340505 + 1944706 4 chr18 3334810 3343222 - 670336 Expected Chromosome Start End Strand Distance 0 chr1 1288357 1295021 - 6345443 1 chr1 1288357 1295021 - 7052290 2 chr1 3334810 3340505 + 930977 3 chr1 3334810 3340505 + 1944706 4 chr18 3334810 3343222 - 670336 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=5, step=1) Expected index RangeIndex(start=0, stop=5, step=1) index equal [ True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpmiv5ab1d/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpmiv5ab1d/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 1 chr1 3334810 3340505 + 3334792 2 chr1 3334810 3340505 + 3334809 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 3334810 | 3340505 | a | 0 | ... | | chr1 | 3334810 | 3340505 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 3334810 3340505 + 3334792 1 chr1 3334810 3340505 + 3334809 df2 Chromosome Start End Strand Distance 1 chr1 3334810 3340505 + 3334792 2 chr1 3334810 3340505 + 3334809 Actual Chromosome Start End Strand Distance 0 chr1 3334810 3340505 + 3334792 1 chr1 3334810 3340505 + 3334809 Expected Chromosome Start End Strand Distance 0 chr1 3334810 3340505 + 3334792 1 chr1 3334810 3340505 + 3334809 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=2, step=1) Expected index RangeIndex(start=0, stop=2, step=1) index equal [ True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpirv6k4hk/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpirv6k4hk/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 1 chr1 3334810 3340505 + 3334792 2 chr1 3334810 3340505 + 3334809 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 3334810 | 3340505 | a | 0 | ... | | chr1 | 3334810 | 3340505 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 3334810 3340505 + 3334792 1 chr1 3334810 3340505 + 3334809 df2 Chromosome Start End Strand Distance 1 chr1 3334810 3340505 + 3334792 2 chr1 3334810 3340505 + 3334809 Actual Chromosome Start End Strand Distance 0 chr1 3334810 3340505 + 3334792 1 chr1 3334810 3340505 + 3334809 Expected Chromosome Start End Strand Distance 0 chr1 3334810 3340505 + 3334792 1 chr1 3334810 3340505 + 3334809 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=2, step=1) Expected index RangeIndex(start=0, stop=2, step=1) index equal [ True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp4uvbsj5i/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp4uvbsj5i/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 1 chr1 3334810 3340505 + 3334792 2 chr1 3334810 3340505 + 3334809 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 3334810 | 3340505 | a | 0 | ... | | chr1 | 3334810 | 3340505 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 3334810 3340505 + 3334792 1 chr1 3334810 3340505 + 3334809 df2 Chromosome Start End Strand Distance 1 chr1 3334810 3340505 + 3334792 2 chr1 3334810 3340505 + 3334809 Actual Chromosome Start End Strand Distance 0 chr1 3334810 3340505 + 3334792 1 chr1 3334810 3340505 + 3334809 Expected Chromosome Start End Strand Distance 0 chr1 3334810 3340505 + 3334792 1 chr1 3334810 3340505 + 3334809 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=2, step=1) Expected index RangeIndex(start=0, stop=2, step=1) index equal [ True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp4t0cgyrl/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp4t0cgyrl/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp2xv3hewc/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp2xv3hewc/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpup517cuj/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpup517cuj/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpjimgeex9/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpjimgeex9/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 2925585 2930845 + 1652598 1 chr1 2925585 2930845 + 2373172 2 chr1 5713822 5713897 + 413459 3 chr1 5713822 5713897 + 2701116 4 chr1 7763598 7765790 + 649223 5 chr1 7763598 7765790 + 1635284 6 chr1 9000194 9000873 + 584166 7 chr1 9000194 9000873 + 2871880 8 chr1 9000194 9006175 + 584166 9 chr1 9000194 9006175 + 2871880 10 chr1 9000194 9007662 - 8994317 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 9000194 | 9006175 | a | 0 | ... | | chr1 | 9000194 | 9006175 | a | 0 | ... | | chr1 | 2925585 | 2930845 | a | 0 | ... | | chr1 | 2925585 | 2930845 | a | 0 | ... | | ... | ... | ... | ... | ... | ... | | chr1 | 5713822 | 5713897 | a | 0 | ... | | chr1 | 9000194 | 9000873 | a | 0 | ... | | chr1 | 9000194 | 9000873 | a | 0 | ... | | chr1 | 9000194 | 9007662 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 11 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 2 chr1 2925585 2930845 + 1652598 3 chr1 2925585 2930845 + 2373172 6 chr1 5713822 5713897 + 413459 7 chr1 5713822 5713897 + 2701116 4 chr1 7763598 7765790 + 649223 5 chr1 7763598 7765790 + 1635284 8 chr1 9000194 9000873 + 584166 9 chr1 9000194 9000873 + 2871880 0 chr1 9000194 9006175 + 584166 1 chr1 9000194 9006175 + 2871880 10 chr1 9000194 9007662 - 8994317 df2 Chromosome Start End Strand Distance 0 chr1 2925585 2930845 + 1652598 1 chr1 2925585 2930845 + 2373172 2 chr1 5713822 5713897 + 413459 3 chr1 5713822 5713897 + 2701116 4 chr1 7763598 7765790 + 649223 5 chr1 7763598 7765790 + 1635284 6 chr1 9000194 9000873 + 584166 7 chr1 9000194 9000873 + 2871880 8 chr1 9000194 9006175 + 584166 9 chr1 9000194 9006175 + 2871880 10 chr1 9000194 9007662 - 8994317 Actual Chromosome Start End Strand Distance 0 chr1 2925585 2930845 + 1652598 1 chr1 2925585 2930845 + 2373172 2 chr1 5713822 5713897 + 413459 3 chr1 5713822 5713897 + 2701116 4 chr1 7763598 7765790 + 649223 5 chr1 7763598 7765790 + 1635284 6 chr1 9000194 9000873 + 584166 7 chr1 9000194 9000873 + 2871880 8 chr1 9000194 9006175 + 584166 9 chr1 9000194 9006175 + 2871880 10 chr1 9000194 9007662 - 8994317 Expected Chromosome Start End Strand Distance 0 chr1 2925585 2930845 + 1652598 1 chr1 2925585 2930845 + 2373172 2 chr1 5713822 5713897 + 413459 3 chr1 5713822 5713897 + 2701116 4 chr1 7763598 7765790 + 649223 5 chr1 7763598 7765790 + 1635284 6 chr1 9000194 9000873 + 584166 7 chr1 9000194 9000873 + 2871880 8 chr1 9000194 9006175 + 584166 9 chr1 9000194 9006175 + 2871880 10 chr1 9000194 9007662 - 8994317 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=11, step=1) Expected index RangeIndex(start=0, stop=11, step=1) index equal [ True True True True True True True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpjj96lhdl/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpjj96lhdl/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 1 5878 + 544776 1 chr1 1 5878 + 1260933 2 chr1 550653 552414 - 544776 3 chr1 1266810 1272988 - 1260933 4 chr1 6127355 6128315 - 6121478 5 chr1 8415012 8416029 - 8409135 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 1 | 5878 | a | 0 | ... | | chr1 | 1 | 5878 | a | 0 | ... | | chr1 | 8415012 | 8416029 | a | 0 | ... | | chr1 | 1266810 | 1272988 | a | 0 | ... | | chr1 | 550653 | 552414 | a | 0 | ... | | chr1 | 6127355 | 6128315 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 6 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 1 5878 + 544776 1 chr1 1 5878 + 1260933 4 chr1 550653 552414 - 544776 3 chr1 1266810 1272988 - 1260933 5 chr1 6127355 6128315 - 6121478 2 chr1 8415012 8416029 - 8409135 df2 Chromosome Start End Strand Distance 0 chr1 1 5878 + 544776 1 chr1 1 5878 + 1260933 2 chr1 550653 552414 - 544776 3 chr1 1266810 1272988 - 1260933 4 chr1 6127355 6128315 - 6121478 5 chr1 8415012 8416029 - 8409135 Actual Chromosome Start End Strand Distance 0 chr1 1 5878 + 544776 1 chr1 1 5878 + 1260933 2 chr1 550653 552414 - 544776 3 chr1 1266810 1272988 - 1260933 4 chr1 6127355 6128315 - 6121478 5 chr1 8415012 8416029 - 8409135 Expected Chromosome Start End Strand Distance 0 chr1 1 5878 + 544776 1 chr1 1 5878 + 1260933 2 chr1 550653 552414 - 544776 3 chr1 1266810 1272988 - 1260933 4 chr1 6127355 6128315 - 6121478 5 chr1 8415012 8416029 - 8409135 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=6, step=1) Expected index RangeIndex(start=0, stop=6, step=1) index equal [ True True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpaocfnuvn/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpaocfnuvn/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 1 5878 + 544776 1 chr1 1 5878 + 1260933 2 chr1 550653 552414 - 544776 3 chr1 1266810 1272988 - 1260933 4 chr1 6127355 6128315 - 6121478 5 chr1 8415012 8416029 - 8409135 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 1 | 5878 | a | 0 | ... | | chr1 | 1 | 5878 | a | 0 | ... | | chr1 | 8415012 | 8416029 | a | 0 | ... | | chr1 | 1266810 | 1272988 | a | 0 | ... | | chr1 | 550653 | 552414 | a | 0 | ... | | chr1 | 6127355 | 6128315 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 6 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 1 5878 + 544776 1 chr1 1 5878 + 1260933 4 chr1 550653 552414 - 544776 3 chr1 1266810 1272988 - 1260933 5 chr1 6127355 6128315 - 6121478 2 chr1 8415012 8416029 - 8409135 df2 Chromosome Start End Strand Distance 0 chr1 1 5878 + 544776 1 chr1 1 5878 + 1260933 2 chr1 550653 552414 - 544776 3 chr1 1266810 1272988 - 1260933 4 chr1 6127355 6128315 - 6121478 5 chr1 8415012 8416029 - 8409135 Actual Chromosome Start End Strand Distance 0 chr1 1 5878 + 544776 1 chr1 1 5878 + 1260933 2 chr1 550653 552414 - 544776 3 chr1 1266810 1272988 - 1260933 4 chr1 6127355 6128315 - 6121478 5 chr1 8415012 8416029 - 8409135 Expected Chromosome Start End Strand Distance 0 chr1 1 5878 + 544776 1 chr1 1 5878 + 1260933 2 chr1 550653 552414 - 544776 3 chr1 1266810 1272988 - 1260933 4 chr1 6127355 6128315 - 6121478 5 chr1 8415012 8416029 - 8409135 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=6, step=1) Expected index RangeIndex(start=0, stop=6, step=1) index equal [ True True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp21fp1jdy/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp21fp1jdy/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 1 chr1 550653 552414 - 550636 2 chr1 550653 552414 - 550647 3 chr1 1266810 1272988 - 1266793 4 chr1 1266810 1272988 - 1266804 5 chr1 6127355 6128315 - 6127338 6 chr1 6127355 6128315 - 6127349 7 chr1 8415012 8416029 - 8414995 8 chr1 8415012 8416029 - 8415006 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 8415012 | 8416029 | a | 0 | ... | | chr1 | 8415012 | 8416029 | a | 0 | ... | | chr1 | 1266810 | 1272988 | a | 0 | ... | | chr1 | 1266810 | 1272988 | a | 0 | ... | | chr1 | 550653 | 552414 | a | 0 | ... | | chr1 | 550653 | 552414 | a | 0 | ... | | chr1 | 6127355 | 6128315 | a | 0 | ... | | chr1 | 6127355 | 6128315 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 8 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 4 chr1 550653 552414 - 550636 5 chr1 550653 552414 - 550647 2 chr1 1266810 1272988 - 1266793 3 chr1 1266810 1272988 - 1266804 6 chr1 6127355 6128315 - 6127338 7 chr1 6127355 6128315 - 6127349 0 chr1 8415012 8416029 - 8414995 1 chr1 8415012 8416029 - 8415006 df2 Chromosome Start End Strand Distance 1 chr1 550653 552414 - 550636 2 chr1 550653 552414 - 550647 3 chr1 1266810 1272988 - 1266793 4 chr1 1266810 1272988 - 1266804 5 chr1 6127355 6128315 - 6127338 6 chr1 6127355 6128315 - 6127349 7 chr1 8415012 8416029 - 8414995 8 chr1 8415012 8416029 - 8415006 Actual Chromosome Start End Strand Distance 0 chr1 550653 552414 - 550636 1 chr1 550653 552414 - 550647 2 chr1 1266810 1272988 - 1266793 3 chr1 1266810 1272988 - 1266804 4 chr1 6127355 6128315 - 6127338 5 chr1 6127355 6128315 - 6127349 6 chr1 8415012 8416029 - 8414995 7 chr1 8415012 8416029 - 8415006 Expected Chromosome Start End Strand Distance 0 chr1 550653 552414 - 550636 1 chr1 550653 552414 - 550647 2 chr1 1266810 1272988 - 1266793 3 chr1 1266810 1272988 - 1266804 4 chr1 6127355 6128315 - 6127338 5 chr1 6127355 6128315 - 6127349 6 chr1 8415012 8416029 - 8414995 7 chr1 8415012 8416029 - 8415006 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=8, step=1) Expected index RangeIndex(start=0, stop=8, step=1) index equal [ True True True True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpzestiyz1/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpzestiyz1/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 1 chr1 550653 552414 - 550636 2 chr1 550653 552414 - 550647 3 chr1 1266810 1272988 - 1266793 4 chr1 1266810 1272988 - 1266804 5 chr1 6127355 6128315 - 6127338 6 chr1 6127355 6128315 - 6127349 7 chr1 8415012 8416029 - 8414995 8 chr1 8415012 8416029 - 8415006 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 8415012 | 8416029 | a | 0 | ... | | chr1 | 8415012 | 8416029 | a | 0 | ... | | chr1 | 1266810 | 1272988 | a | 0 | ... | | chr1 | 1266810 | 1272988 | a | 0 | ... | | chr1 | 550653 | 552414 | a | 0 | ... | | chr1 | 550653 | 552414 | a | 0 | ... | | chr1 | 6127355 | 6128315 | a | 0 | ... | | chr1 | 6127355 | 6128315 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 8 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 4 chr1 550653 552414 - 550636 5 chr1 550653 552414 - 550647 2 chr1 1266810 1272988 - 1266793 3 chr1 1266810 1272988 - 1266804 6 chr1 6127355 6128315 - 6127338 7 chr1 6127355 6128315 - 6127349 0 chr1 8415012 8416029 - 8414995 1 chr1 8415012 8416029 - 8415006 df2 Chromosome Start End Strand Distance 1 chr1 550653 552414 - 550636 2 chr1 550653 552414 - 550647 3 chr1 1266810 1272988 - 1266793 4 chr1 1266810 1272988 - 1266804 5 chr1 6127355 6128315 - 6127338 6 chr1 6127355 6128315 - 6127349 7 chr1 8415012 8416029 - 8414995 8 chr1 8415012 8416029 - 8415006 Actual Chromosome Start End Strand Distance 0 chr1 550653 552414 - 550636 1 chr1 550653 552414 - 550647 2 chr1 1266810 1272988 - 1266793 3 chr1 1266810 1272988 - 1266804 4 chr1 6127355 6128315 - 6127338 5 chr1 6127355 6128315 - 6127349 6 chr1 8415012 8416029 - 8414995 7 chr1 8415012 8416029 - 8415006 Expected Chromosome Start End Strand Distance 0 chr1 550653 552414 - 550636 1 chr1 550653 552414 - 550647 2 chr1 1266810 1272988 - 1266793 3 chr1 1266810 1272988 - 1266804 4 chr1 6127355 6128315 - 6127338 5 chr1 6127355 6128315 - 6127349 6 chr1 8415012 8416029 - 8414995 7 chr1 8415012 8416029 - 8415006 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=8, step=1) Expected index RangeIndex(start=0, stop=8, step=1) index equal [ True True True True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpsh1uxe3x/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpsh1uxe3x/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 1 chr1 550653 552414 - 550636 2 chr1 550653 552414 - 550647 3 chr1 1266810 1272988 - 1266793 4 chr1 1266810 1272988 - 1266804 5 chr1 6127355 6128315 - 6127338 6 chr1 6127355 6128315 - 6127349 7 chr1 8415012 8416029 - 8414995 8 chr1 8415012 8416029 - 8415006 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 8415012 | 8416029 | a | 0 | ... | | chr1 | 8415012 | 8416029 | a | 0 | ... | | chr1 | 1266810 | 1272988 | a | 0 | ... | | chr1 | 1266810 | 1272988 | a | 0 | ... | | chr1 | 550653 | 552414 | a | 0 | ... | | chr1 | 550653 | 552414 | a | 0 | ... | | chr1 | 6127355 | 6128315 | a | 0 | ... | | chr1 | 6127355 | 6128315 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 8 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 4 chr1 550653 552414 - 550636 5 chr1 550653 552414 - 550647 2 chr1 1266810 1272988 - 1266793 3 chr1 1266810 1272988 - 1266804 6 chr1 6127355 6128315 - 6127338 7 chr1 6127355 6128315 - 6127349 0 chr1 8415012 8416029 - 8414995 1 chr1 8415012 8416029 - 8415006 df2 Chromosome Start End Strand Distance 1 chr1 550653 552414 - 550636 2 chr1 550653 552414 - 550647 3 chr1 1266810 1272988 - 1266793 4 chr1 1266810 1272988 - 1266804 5 chr1 6127355 6128315 - 6127338 6 chr1 6127355 6128315 - 6127349 7 chr1 8415012 8416029 - 8414995 8 chr1 8415012 8416029 - 8415006 Actual Chromosome Start End Strand Distance 0 chr1 550653 552414 - 550636 1 chr1 550653 552414 - 550647 2 chr1 1266810 1272988 - 1266793 3 chr1 1266810 1272988 - 1266804 4 chr1 6127355 6128315 - 6127338 5 chr1 6127355 6128315 - 6127349 6 chr1 8415012 8416029 - 8414995 7 chr1 8415012 8416029 - 8415006 Expected Chromosome Start End Strand Distance 0 chr1 550653 552414 - 550636 1 chr1 550653 552414 - 550647 2 chr1 1266810 1272988 - 1266793 3 chr1 1266810 1272988 - 1266804 4 chr1 6127355 6128315 - 6127338 5 chr1 6127355 6128315 - 6127349 6 chr1 8415012 8416029 - 8414995 7 chr1 8415012 8416029 - 8415006 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=8, step=1) Expected index RangeIndex(start=0, stop=8, step=1) index equal [ True True True True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp0iclam6c/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp0iclam6c/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 1 chr1 550653 552414 - 550636 2 chr1 550653 552414 - 550647 3 chr1 1266810 1272988 - 1266793 4 chr1 1266810 1272988 - 1266804 5 chr1 2077946 2087525 + 2077929 6 chr1 6127355 6128315 - 6127338 7 chr1 6127355 6128315 - 6127349 8 chr1 8415012 8416029 - 8414995 9 chr1 8415012 8416029 - 8415006 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 2077946 | 2087525 | a | 0 | ... | | chr1 | 8415012 | 8416029 | a | 0 | ... | | chr1 | 8415012 | 8416029 | a | 0 | ... | | chr1 | 1266810 | 1272988 | a | 0 | ... | | ... | ... | ... | ... | ... | ... | | chr1 | 550653 | 552414 | a | 0 | ... | | chr1 | 550653 | 552414 | a | 0 | ... | | chr1 | 6127355 | 6128315 | a | 0 | ... | | chr1 | 6127355 | 6128315 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 9 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 5 chr1 550653 552414 - 550636 6 chr1 550653 552414 - 550647 3 chr1 1266810 1272988 - 1266793 4 chr1 1266810 1272988 - 1266804 0 chr1 2077946 2087525 + 2077929 7 chr1 6127355 6128315 - 6127338 8 chr1 6127355 6128315 - 6127349 1 chr1 8415012 8416029 - 8414995 2 chr1 8415012 8416029 - 8415006 df2 Chromosome Start End Strand Distance 1 chr1 550653 552414 - 550636 2 chr1 550653 552414 - 550647 3 chr1 1266810 1272988 - 1266793 4 chr1 1266810 1272988 - 1266804 5 chr1 2077946 2087525 + 2077929 6 chr1 6127355 6128315 - 6127338 7 chr1 6127355 6128315 - 6127349 8 chr1 8415012 8416029 - 8414995 9 chr1 8415012 8416029 - 8415006 Actual Chromosome Start End Strand Distance 0 chr1 550653 552414 - 550636 1 chr1 550653 552414 - 550647 2 chr1 1266810 1272988 - 1266793 3 chr1 1266810 1272988 - 1266804 4 chr1 2077946 2087525 + 2077929 5 chr1 6127355 6128315 - 6127338 6 chr1 6127355 6128315 - 6127349 7 chr1 8415012 8416029 - 8414995 8 chr1 8415012 8416029 - 8415006 Expected Chromosome Start End Strand Distance 0 chr1 550653 552414 - 550636 1 chr1 550653 552414 - 550647 2 chr1 1266810 1272988 - 1266793 3 chr1 1266810 1272988 - 1266804 4 chr1 2077946 2087525 + 2077929 5 chr1 6127355 6128315 - 6127338 6 chr1 6127355 6128315 - 6127349 7 chr1 8415012 8416029 - 8414995 8 chr1 8415012 8416029 - 8415006 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=9, step=1) Expected index RangeIndex(start=0, stop=9, step=1) index equal [ True True True True True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpfcnxkv54/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpfcnxkv54/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 996779 996781 + 4137874 2 chr1 4254432 4259992 + 874663 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 4254432 | 4259992 | a | 0 | ... | | chr1 | 996779 | 996781 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 1 chr1 996779 996781 + 4137874 0 chr1 4254432 4259992 + 874663 df2 Chromosome Start End Strand Distance 0 chr1 996779 996781 + 4137874 2 chr1 4254432 4259992 + 874663 Actual Chromosome Start End Strand Distance 0 chr1 996779 996781 + 4137874 1 chr1 4254432 4259992 + 874663 Expected Chromosome Start End Strand Distance 0 chr1 996779 996781 + 4137874 1 chr1 4254432 4259992 + 874663 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=2, step=1) Expected index RangeIndex(start=0, stop=2, step=1) index equal [ True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpcc8bfpnt/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpcc8bfpnt/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 996779 996781 + 4137874 2 chr1 4254432 4259992 + 874663 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 4254432 | 4259992 | a | 0 | ... | | chr1 | 996779 | 996781 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 1 chr1 996779 996781 + 4137874 0 chr1 4254432 4259992 + 874663 df2 Chromosome Start End Strand Distance 0 chr1 996779 996781 + 4137874 2 chr1 4254432 4259992 + 874663 Actual Chromosome Start End Strand Distance 0 chr1 996779 996781 + 4137874 1 chr1 4254432 4259992 + 874663 Expected Chromosome Start End Strand Distance 0 chr1 996779 996781 + 4137874 1 chr1 4254432 4259992 + 874663 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=2, step=1) Expected index RangeIndex(start=0, stop=2, step=1) index equal [ True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmphsa_iti6/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmphsa_iti6/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 1 3 + 5134652 2 chr1 1 5561 + 5129094 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 1 | 5561 | a | 0 | ... | | chr1 | 1 | 3 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 1 chr1 1 3 + 5134652 0 chr1 1 5561 + 5129094 df2 Chromosome Start End Strand Distance 0 chr1 1 3 + 5134652 2 chr1 1 5561 + 5129094 Actual Chromosome Start End Strand Distance 0 chr1 1 3 + 5134652 1 chr1 1 5561 + 5129094 Expected Chromosome Start End Strand Distance 0 chr1 1 3 + 5134652 1 chr1 1 5561 + 5129094 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=2, step=1) Expected index RangeIndex(start=0, stop=2, step=1) index equal [ True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpfkf_3amo/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpfkf_3amo/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 1 3 + 5134652 2 chr1 1 5561 + 5129094 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 1 | 5561 | a | 0 | ... | | chr1 | 1 | 3 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 1 chr1 1 3 + 5134652 0 chr1 1 5561 + 5129094 df2 Chromosome Start End Strand Distance 0 chr1 1 3 + 5134652 2 chr1 1 5561 + 5129094 Actual Chromosome Start End Strand Distance 0 chr1 1 3 + 5134652 1 chr1 1 5561 + 5129094 Expected Chromosome Start End Strand Distance 0 chr1 1 3 + 5134652 1 chr1 1 5561 + 5129094 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=2, step=1) Expected index RangeIndex(start=0, stop=2, step=1) index equal [ True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpv1dpko_g/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpv1dpko_g/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpwihhvpz9/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpwihhvpz9/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpcyabko8d/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpcyabko8d/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp7eec_zgu/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp7eec_zgu/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 708141 717501 - 5752432 1 chr1 837506 847505 + 335492 2 chr1 837506 847505 + 3343020 3 chr1 7166615 7176557 + 2968308 4 chr1 7166615 7176557 + 6664601 5 chr1 7925562 7926268 - 1454780 6 chr1 8228421 8235501 - 1757639 7 chr1 9567065 9576786 - 3096283 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 7166615 | 7176557 | a | 0 | ... | | chr1 | 7166615 | 7176557 | a | 0 | ... | | chr1 | 837506 | 847505 | a | 0 | ... | | chr1 | 837506 | 847505 | a | 0 | ... | | chr1 | 9567065 | 9576786 | a | 0 | ... | | chr1 | 708141 | 717501 | a | 0 | ... | | chr1 | 7925562 | 7926268 | a | 0 | ... | | chr1 | 8228421 | 8235501 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 8 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 5 chr1 708141 717501 - 5752432 2 chr1 837506 847505 + 335492 3 chr1 837506 847505 + 3343020 0 chr1 7166615 7176557 + 2968308 1 chr1 7166615 7176557 + 6664601 6 chr1 7925562 7926268 - 1454780 7 chr1 8228421 8235501 - 1757639 4 chr1 9567065 9576786 - 3096283 df2 Chromosome Start End Strand Distance 0 chr1 708141 717501 - 5752432 1 chr1 837506 847505 + 335492 2 chr1 837506 847505 + 3343020 3 chr1 7166615 7176557 + 2968308 4 chr1 7166615 7176557 + 6664601 5 chr1 7925562 7926268 - 1454780 6 chr1 8228421 8235501 - 1757639 7 chr1 9567065 9576786 - 3096283 Actual Chromosome Start End Strand Distance 0 chr1 708141 717501 - 5752432 1 chr1 837506 847505 + 335492 2 chr1 837506 847505 + 3343020 3 chr1 7166615 7176557 + 2968308 4 chr1 7166615 7176557 + 6664601 5 chr1 7925562 7926268 - 1454780 6 chr1 8228421 8235501 - 1757639 7 chr1 9567065 9576786 - 3096283 Expected Chromosome Start End Strand Distance 0 chr1 708141 717501 - 5752432 1 chr1 837506 847505 + 335492 2 chr1 837506 847505 + 3343020 3 chr1 7166615 7176557 + 2968308 4 chr1 7166615 7176557 + 6664601 5 chr1 7925562 7926268 - 1454780 6 chr1 8228421 8235501 - 1757639 7 chr1 9567065 9576786 - 3096283 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=8, step=1) Expected index RangeIndex(start=0, stop=8, step=1) index equal [ True True True True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpahvc0_42/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpahvc0_42/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpopqrx0wu/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpopqrx0wu/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpy8p9yvpz/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpy8p9yvpz/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpea4nszwr/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpea4nszwr/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmprzuk56cr/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmprzuk56cr/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpsih574nz/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpsih574nz/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpqkev9t94/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpqkev9t94/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp1n4fgjqh/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp1n4fgjqh/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp9u2mtzc9/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp9u2mtzc9/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmppuhwzyre/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmppuhwzyre/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpbt887nvk/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpbt887nvk/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpkvh_7w9n/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpkvh_7w9n/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpb0hzmqns/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpb0hzmqns/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpv1vuo5ov/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpv1vuo5ov/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 1 chr1 2349688 2358708 + 7210008 2 chr1 8386570 8389668 + 1179048 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 8386570 | 8389668 | a | 0 | ... | | chr1 | 2349688 | 2358708 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 1 chr1 2349688 2358708 + 7210008 0 chr1 8386570 8389668 + 1179048 df2 Chromosome Start End Strand Distance 1 chr1 2349688 2358708 + 7210008 2 chr1 8386570 8389668 + 1179048 Actual Chromosome Start End Strand Distance 0 chr1 2349688 2358708 + 7210008 1 chr1 8386570 8389668 + 1179048 Expected Chromosome Start End Strand Distance 0 chr1 2349688 2358708 + 7210008 1 chr1 8386570 8389668 + 1179048 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=2, step=1) Expected index RangeIndex(start=0, stop=2, step=1) index equal [ True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpj7_i5tft/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpj7_i5tft/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpfhx827xf/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpfhx827xf/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpcgjqfgcw/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpcgjqfgcw/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp3zx2v81i/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp3zx2v81i/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpbcg4d3sd/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpbcg4d3sd/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp5vzxuvww/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp5vzxuvww/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 1 chr1 20 21 - 19 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 20 | 21 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 20 21 - 19 df2 Chromosome Start End Strand Distance 1 chr1 20 21 - 19 Actual Chromosome Start End Strand Distance 0 chr1 20 21 - 19 Expected Chromosome Start End Strand Distance 0 chr1 20 21 - 19 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=1, step=1) Expected index RangeIndex(start=0, stop=1, step=1) index equal [ True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpcyhru2dj/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpcyhru2dj/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 2 chr1 3425879 3431998 + 169105 3 chr1 3425879 3431998 + 1882592 4 chr1 5558416 5562025 + 238537 5 chr1 5558416 5562025 + 2301642 6 chr1 5616769 5623518 + 296890 7 chr1 5616769 5623518 + 2359995 9 chr1 8263608 8270830 + 828463 10 chr1 8263608 8270830 + 982425 12 chr1 9804349 9804427 + 549643 13 chr1 9804349 9804427 + 705057 14 chr1 10000000 10001350 + 745294 15 chr1 10000000 10001350 + 900708 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 8263608 | 8270830 | a | 0 | ... | | chr1 | 8263608 | 8270830 | a | 0 | ... | | chr1 | 5558416 | 5562025 | a | 0 | ... | | chr1 | 5558416 | 5562025 | a | 0 | ... | | ... | ... | ... | ... | ... | ... | | chr1 | 9804349 | 9804427 | a | 0 | ... | | chr1 | 9804349 | 9804427 | a | 0 | ... | | chr1 | 3425879 | 3431998 | a | 0 | ... | | chr1 | 3425879 | 3431998 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 12 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 10 chr1 3425879 3431998 + 169105 11 chr1 3425879 3431998 + 1882592 2 chr1 5558416 5562025 + 238537 3 chr1 5558416 5562025 + 2301642 4 chr1 5616769 5623518 + 296890 5 chr1 5616769 5623518 + 2359995 0 chr1 8263608 8270830 + 828463 1 chr1 8263608 8270830 + 982425 8 chr1 9804349 9804427 + 549643 9 chr1 9804349 9804427 + 705057 6 chr1 10000000 10001350 + 745294 7 chr1 10000000 10001350 + 900708 df2 Chromosome Start End Strand Distance 2 chr1 3425879 3431998 + 169105 3 chr1 3425879 3431998 + 1882592 4 chr1 5558416 5562025 + 238537 5 chr1 5558416 5562025 + 2301642 6 chr1 5616769 5623518 + 296890 7 chr1 5616769 5623518 + 2359995 9 chr1 8263608 8270830 + 828463 10 chr1 8263608 8270830 + 982425 12 chr1 9804349 9804427 + 549643 13 chr1 9804349 9804427 + 705057 14 chr1 10000000 10001350 + 745294 15 chr1 10000000 10001350 + 900708 Actual Chromosome Start End Strand Distance 0 chr1 3425879 3431998 + 169105 1 chr1 3425879 3431998 + 1882592 2 chr1 5558416 5562025 + 238537 3 chr1 5558416 5562025 + 2301642 4 chr1 5616769 5623518 + 296890 5 chr1 5616769 5623518 + 2359995 6 chr1 8263608 8270830 + 828463 7 chr1 8263608 8270830 + 982425 8 chr1 9804349 9804427 + 549643 9 chr1 9804349 9804427 + 705057 10 chr1 10000000 10001350 + 745294 11 chr1 10000000 10001350 + 900708 Expected Chromosome Start End Strand Distance 0 chr1 3425879 3431998 + 169105 1 chr1 3425879 3431998 + 1882592 2 chr1 5558416 5562025 + 238537 3 chr1 5558416 5562025 + 2301642 4 chr1 5616769 5623518 + 296890 5 chr1 5616769 5623518 + 2359995 6 chr1 8263608 8270830 + 828463 7 chr1 8263608 8270830 + 982425 8 chr1 9804349 9804427 + 549643 9 chr1 9804349 9804427 + 705057 10 chr1 10000000 10001350 + 745294 11 chr1 10000000 10001350 + 900708 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=12, step=1) Expected index RangeIndex(start=0, stop=12, step=1) index equal [ True True True True True True True True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmppl75yf36/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmppl75yf36/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 2 chr1 3425879 3431998 + 169105 3 chr1 3425879 3431998 + 1882592 4 chr1 5558416 5562025 + 238537 5 chr1 5558416 5562025 + 2301642 6 chr1 5616769 5623518 + 296890 7 chr1 5616769 5623518 + 2359995 9 chr1 8263608 8270830 + 828463 10 chr1 8263608 8270830 + 982425 12 chr1 9804349 9804427 + 549643 13 chr1 9804349 9804427 + 705057 14 chr1 10000000 10001350 + 745294 15 chr1 10000000 10001350 + 900708 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 8263608 | 8270830 | a | 0 | ... | | chr1 | 8263608 | 8270830 | a | 0 | ... | | chr1 | 5558416 | 5562025 | a | 0 | ... | | chr1 | 5558416 | 5562025 | a | 0 | ... | | ... | ... | ... | ... | ... | ... | | chr1 | 9804349 | 9804427 | a | 0 | ... | | chr1 | 9804349 | 9804427 | a | 0 | ... | | chr1 | 3425879 | 3431998 | a | 0 | ... | | chr1 | 3425879 | 3431998 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 12 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 10 chr1 3425879 3431998 + 169105 11 chr1 3425879 3431998 + 1882592 2 chr1 5558416 5562025 + 238537 3 chr1 5558416 5562025 + 2301642 4 chr1 5616769 5623518 + 296890 5 chr1 5616769 5623518 + 2359995 0 chr1 8263608 8270830 + 828463 1 chr1 8263608 8270830 + 982425 8 chr1 9804349 9804427 + 549643 9 chr1 9804349 9804427 + 705057 6 chr1 10000000 10001350 + 745294 7 chr1 10000000 10001350 + 900708 df2 Chromosome Start End Strand Distance 2 chr1 3425879 3431998 + 169105 3 chr1 3425879 3431998 + 1882592 4 chr1 5558416 5562025 + 238537 5 chr1 5558416 5562025 + 2301642 6 chr1 5616769 5623518 + 296890 7 chr1 5616769 5623518 + 2359995 9 chr1 8263608 8270830 + 828463 10 chr1 8263608 8270830 + 982425 12 chr1 9804349 9804427 + 549643 13 chr1 9804349 9804427 + 705057 14 chr1 10000000 10001350 + 745294 15 chr1 10000000 10001350 + 900708 Actual Chromosome Start End Strand Distance 0 chr1 3425879 3431998 + 169105 1 chr1 3425879 3431998 + 1882592 2 chr1 5558416 5562025 + 238537 3 chr1 5558416 5562025 + 2301642 4 chr1 5616769 5623518 + 296890 5 chr1 5616769 5623518 + 2359995 6 chr1 8263608 8270830 + 828463 7 chr1 8263608 8270830 + 982425 8 chr1 9804349 9804427 + 549643 9 chr1 9804349 9804427 + 705057 10 chr1 10000000 10001350 + 745294 11 chr1 10000000 10001350 + 900708 Expected Chromosome Start End Strand Distance 0 chr1 3425879 3431998 + 169105 1 chr1 3425879 3431998 + 1882592 2 chr1 5558416 5562025 + 238537 3 chr1 5558416 5562025 + 2301642 4 chr1 5616769 5623518 + 296890 5 chr1 5616769 5623518 + 2359995 6 chr1 8263608 8270830 + 828463 7 chr1 8263608 8270830 + 982425 8 chr1 9804349 9804427 + 549643 9 chr1 9804349 9804427 + 705057 10 chr1 10000000 10001350 + 745294 11 chr1 10000000 10001350 + 900708 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=12, step=1) Expected index RangeIndex(start=0, stop=12, step=1) index equal [ True True True True True True True True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp4rrkqag_/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp4rrkqag_/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpwv6bfbk3/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpwv6bfbk3/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 3256693 3256775 - 3256686 1 chr1 3256693 3256775 - 3256692 2 chr1 5314589 5319880 - 5314582 3 chr1 5314589 5319880 - 5314588 4 chr1 9099292 9099293 - 9099285 5 chr1 9099292 9099293 - 9099291 6 chr1 9253254 9254707 - 9253247 7 chr1 9253254 9254707 - 9253253 8 chr6 9435284 9442726 - 9435283 9 chr8 8854525 8857939 - 8854524 10 chrM 2577468 2578989 - 2577467 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 3256693 | 3256775 | a | 0 | ... | | chr1 | 3256693 | 3256775 | a | 0 | ... | | chr1 | 9253254 | 9254707 | a | 0 | ... | | chr1 | 9253254 | 9254707 | a | 0 | ... | | ... | ... | ... | ... | ... | ... | | chr1 | 5314589 | 5319880 | a | 0 | ... | | chr1 | 5314589 | 5319880 | a | 0 | ... | | chr1 | 9099292 | 9099293 | a | 0 | ... | | chr1 | 9099292 | 9099293 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 11 rows and 12 columns from 4 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 10 chrM 2577468 2578989 - 2577467 0 chr1 3256693 3256775 - 3256686 1 chr1 3256693 3256775 - 3256692 4 chr1 5314589 5319880 - 5314582 5 chr1 5314589 5319880 - 5314588 9 chr8 8854525 8857939 - 8854524 6 chr1 9099292 9099293 - 9099285 7 chr1 9099292 9099293 - 9099291 2 chr1 9253254 9254707 - 9253247 3 chr1 9253254 9254707 - 9253253 8 chr6 9435284 9442726 - 9435283 df2 Chromosome Start End Strand Distance 10 chrM 2577468 2578989 - 2577467 0 chr1 3256693 3256775 - 3256686 1 chr1 3256693 3256775 - 3256692 2 chr1 5314589 5319880 - 5314582 3 chr1 5314589 5319880 - 5314588 9 chr8 8854525 8857939 - 8854524 4 chr1 9099292 9099293 - 9099285 5 chr1 9099292 9099293 - 9099291 6 chr1 9253254 9254707 - 9253247 7 chr1 9253254 9254707 - 9253253 8 chr6 9435284 9442726 - 9435283 Actual Chromosome Start End Strand Distance 0 chr1 3256693 3256775 - 3256686 1 chr1 3256693 3256775 - 3256692 2 chr1 5314589 5319880 - 5314582 3 chr1 5314589 5319880 - 5314588 4 chr1 9099292 9099293 - 9099285 5 chr1 9099292 9099293 - 9099291 6 chr1 9253254 9254707 - 9253247 7 chr1 9253254 9254707 - 9253253 8 chr6 9435284 9442726 - 9435283 9 chr8 8854525 8857939 - 8854524 10 chrM 2577468 2578989 - 2577467 Expected Chromosome Start End Strand Distance 0 chr1 3256693 3256775 - 3256686 1 chr1 3256693 3256775 - 3256692 2 chr1 5314589 5319880 - 5314582 3 chr1 5314589 5319880 - 5314588 4 chr1 9099292 9099293 - 9099285 5 chr1 9099292 9099293 - 9099291 6 chr1 9253254 9254707 - 9253247 7 chr1 9253254 9254707 - 9253253 8 chr6 9435284 9442726 - 9435283 9 chr8 8854525 8857939 - 8854524 10 chrM 2577468 2578989 - 2577467 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=11, step=1) Expected index RangeIndex(start=0, stop=11, step=1) index equal [ True True True True True True True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpol0frs2n/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpol0frs2n/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 3256693 3256694 - 3256686 1 chr1 3256693 3256694 - 3256692 2 chr1 5314589 5314590 - 5314582 3 chr1 5314589 5314590 - 5314588 4 chr1 9099292 9099293 - 9099285 5 chr1 9099292 9099293 - 9099291 6 chr1 9253254 9253255 - 9253247 7 chr1 9253254 9253255 - 9253253 8 chr6 9435284 9435285 - 9435283 9 chr8 8854525 8854526 - 8854524 10 chrM 2577468 2577469 - 2577467 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 3256693 | 3256694 | a | 0 | ... | | chr1 | 3256693 | 3256694 | a | 0 | ... | | chr1 | 9253254 | 9253255 | a | 0 | ... | | chr1 | 9253254 | 9253255 | a | 0 | ... | | ... | ... | ... | ... | ... | ... | | chr1 | 5314589 | 5314590 | a | 0 | ... | | chr1 | 5314589 | 5314590 | a | 0 | ... | | chr1 | 9099292 | 9099293 | a | 0 | ... | | chr1 | 9099292 | 9099293 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 11 rows and 12 columns from 4 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 10 chrM 2577468 2577469 - 2577467 0 chr1 3256693 3256694 - 3256686 1 chr1 3256693 3256694 - 3256692 4 chr1 5314589 5314590 - 5314582 5 chr1 5314589 5314590 - 5314588 9 chr8 8854525 8854526 - 8854524 6 chr1 9099292 9099293 - 9099285 7 chr1 9099292 9099293 - 9099291 2 chr1 9253254 9253255 - 9253247 3 chr1 9253254 9253255 - 9253253 8 chr6 9435284 9435285 - 9435283 df2 Chromosome Start End Strand Distance 10 chrM 2577468 2577469 - 2577467 0 chr1 3256693 3256694 - 3256686 1 chr1 3256693 3256694 - 3256692 2 chr1 5314589 5314590 - 5314582 3 chr1 5314589 5314590 - 5314588 9 chr8 8854525 8854526 - 8854524 4 chr1 9099292 9099293 - 9099285 5 chr1 9099292 9099293 - 9099291 6 chr1 9253254 9253255 - 9253247 7 chr1 9253254 9253255 - 9253253 8 chr6 9435284 9435285 - 9435283 Actual Chromosome Start End Strand Distance 0 chr1 3256693 3256694 - 3256686 1 chr1 3256693 3256694 - 3256692 2 chr1 5314589 5314590 - 5314582 3 chr1 5314589 5314590 - 5314588 4 chr1 9099292 9099293 - 9099285 5 chr1 9099292 9099293 - 9099291 6 chr1 9253254 9253255 - 9253247 7 chr1 9253254 9253255 - 9253253 8 chr6 9435284 9435285 - 9435283 9 chr8 8854525 8854526 - 8854524 10 chrM 2577468 2577469 - 2577467 Expected Chromosome Start End Strand Distance 0 chr1 3256693 3256694 - 3256686 1 chr1 3256693 3256694 - 3256692 2 chr1 5314589 5314590 - 5314582 3 chr1 5314589 5314590 - 5314588 4 chr1 9099292 9099293 - 9099285 5 chr1 9099292 9099293 - 9099291 6 chr1 9253254 9253255 - 9253247 7 chr1 9253254 9253255 - 9253253 8 chr6 9435284 9435285 - 9435283 9 chr8 8854525 8854526 - 8854524 10 chrM 2577468 2577469 - 2577467 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=11, step=1) Expected index RangeIndex(start=0, stop=11, step=1) index equal [ True True True True True True True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp7k0eljuk/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp7k0eljuk/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpyzl_mbe1/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpyzl_mbe1/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpf4i3ckzw/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpf4i3ckzw/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 5803937 5812537 - 2978634 1 chr1 9275414 9279652 - 482896 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 5803937 | 5812537 | a | 0 | ... | | chr1 | 9275414 | 9279652 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 5803937 5812537 - 2978634 1 chr1 9275414 9279652 - 482896 df2 Chromosome Start End Strand Distance 0 chr1 5803937 5812537 - 2978634 1 chr1 9275414 9279652 - 482896 Actual Chromosome Start End Strand Distance 0 chr1 5803937 5812537 - 2978634 1 chr1 9275414 9279652 - 482896 Expected Chromosome Start End Strand Distance 0 chr1 5803937 5812537 - 2978634 1 chr1 9275414 9279652 - 482896 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=2, step=1) Expected index RangeIndex(start=0, stop=2, step=1) index equal [ True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpmyc7eziy/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpmyc7eziy/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp445lkulo/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp445lkulo/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpgpkzdi3u/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpgpkzdi3u/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp5zbh_7yv/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp5zbh_7yv/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp2sreqax8/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp2sreqax8/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp3k4d8e8l/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp3k4d8e8l/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpwd_89xme/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpwd_89xme/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr13 573085 573613 - 2203968 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr13 | 573085 | 573613 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr13 573085 573613 - 2203968 df2 Chromosome Start End Strand Distance 0 chr13 573085 573613 - 2203968 Actual Chromosome Start End Strand Distance 0 chr13 573085 573613 - 2203968 Expected Chromosome Start End Strand Distance 0 chr13 573085 573613 - 2203968 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=1, step=1) Expected index RangeIndex(start=0, stop=1, step=1) index equal [ True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpmqbjgz0r/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpmqbjgz0r/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpbo82lm_v/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpbo82lm_v/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpfz2o3y8i/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpfz2o3y8i/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 7086017 7090135 + 1301235 1 chr1 7086017 7090135 + 6477558 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 7086017 | 7090135 | a | 0 | ... | | chr1 | 7086017 | 7090135 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 7086017 7090135 + 1301235 1 chr1 7086017 7090135 + 6477558 df2 Chromosome Start End Strand Distance 0 chr1 7086017 7090135 + 1301235 1 chr1 7086017 7090135 + 6477558 Actual Chromosome Start End Strand Distance 0 chr1 7086017 7090135 + 1301235 1 chr1 7086017 7090135 + 6477558 Expected Chromosome Start End Strand Distance 0 chr1 7086017 7090135 + 1301235 1 chr1 7086017 7090135 + 6477558 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=2, step=1) Expected index RangeIndex(start=0, stop=2, step=1) index equal [ True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpxpn99wsq/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpxpn99wsq/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpkfqc_9kd/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpkfqc_9kd/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp0cn0r3it/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp0cn0r3it/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp02c2vbx3/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp02c2vbx3/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpt8hpumw2/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpt8hpumw2/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmphgmft9z2/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmphgmft9z2/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp_yltkt15/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp_yltkt15/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpyrizhj5k/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpyrizhj5k/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpwud5p75f/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpwud5p75f/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpns83vt2u/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpns83vt2u/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpe_9fyeps/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpe_9fyeps/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmplqni4heh/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmplqni4heh/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp20bzkz_5/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp20bzkz_5/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpgk26rro9/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpgk26rro9/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 9957878 9957879 - 9957877 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 9957878 | 9957879 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 9957878 9957879 - 9957877 df2 Chromosome Start End Strand Distance 0 chr1 9957878 9957879 - 9957877 Actual Chromosome Start End Strand Distance 0 chr1 9957878 9957879 - 9957877 Expected Chromosome Start End Strand Distance 0 chr1 9957878 9957879 - 9957877 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=1, step=1) Expected index RangeIndex(start=0, stop=1, step=1) index equal [ True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp9vh2d2mz/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp9vh2d2mz/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 919655 919656 - 919654 1 chr1 9957878 9957879 - 9957877 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 9957878 | 9957879 | a | 0 | ... | | chr1 | 919655 | 919656 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 1 chr1 919655 919656 - 919654 0 chr1 9957878 9957879 - 9957877 df2 Chromosome Start End Strand Distance 0 chr1 919655 919656 - 919654 1 chr1 9957878 9957879 - 9957877 Actual Chromosome Start End Strand Distance 0 chr1 919655 919656 - 919654 1 chr1 9957878 9957879 - 9957877 Expected Chromosome Start End Strand Distance 0 chr1 919655 919656 - 919654 1 chr1 9957878 9957879 - 9957877 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=2, step=1) Expected index RangeIndex(start=0, stop=2, step=1) index equal [ True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpz095m31d/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpz095m31d/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmps5z2p6xz/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmps5z2p6xz/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp8tjmhxd3/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp8tjmhxd3/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpwoheoj49/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpwoheoj49/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 5311680 5321505 - 1237516 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 5311680 | 5321505 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 5311680 5321505 - 1237516 df2 Chromosome Start End Strand Distance 0 chr1 5311680 5321505 - 1237516 Actual Chromosome Start End Strand Distance 0 chr1 5311680 5321505 - 1237516 Expected Chromosome Start End Strand Distance 0 chr1 5311680 5321505 - 1237516 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=1, step=1) Expected index RangeIndex(start=0, stop=1, step=1) index equal [ True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpsm8ix5dk/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpsm8ix5dk/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpybkkv87l/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpybkkv87l/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpimyiftfk/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpimyiftfk/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpghzgfsx1/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpghzgfsx1/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpi0e0pxyd/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpi0e0pxyd/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 2875904 2884684 + 2526119 1 chr1 2875904 2884684 + 6783756 2 chr1 4702538 4711464 + 4352753 3 chr1 4702538 4711464 + 4956976 4 chr1 5199533 5201345 + 4467095 5 chr1 5199533 5201345 + 4849748 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 2875904 | 2884684 | a | 0 | ... | | chr1 | 2875904 | 2884684 | a | 0 | ... | | chr1 | 5199533 | 5201345 | a | 0 | ... | | chr1 | 5199533 | 5201345 | a | 0 | ... | | chr1 | 4702538 | 4711464 | a | 0 | ... | | chr1 | 4702538 | 4711464 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 6 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 2875904 2884684 + 2526119 1 chr1 2875904 2884684 + 6783756 4 chr1 4702538 4711464 + 4352753 5 chr1 4702538 4711464 + 4956976 2 chr1 5199533 5201345 + 4467095 3 chr1 5199533 5201345 + 4849748 df2 Chromosome Start End Strand Distance 0 chr1 2875904 2884684 + 2526119 1 chr1 2875904 2884684 + 6783756 2 chr1 4702538 4711464 + 4352753 3 chr1 4702538 4711464 + 4956976 4 chr1 5199533 5201345 + 4467095 5 chr1 5199533 5201345 + 4849748 Actual Chromosome Start End Strand Distance 0 chr1 2875904 2884684 + 2526119 1 chr1 2875904 2884684 + 6783756 2 chr1 4702538 4711464 + 4352753 3 chr1 4702538 4711464 + 4956976 4 chr1 5199533 5201345 + 4467095 5 chr1 5199533 5201345 + 4849748 Expected Chromosome Start End Strand Distance 0 chr1 2875904 2884684 + 2526119 1 chr1 2875904 2884684 + 6783756 2 chr1 4702538 4711464 + 4352753 3 chr1 4702538 4711464 + 4956976 4 chr1 5199533 5201345 + 4467095 5 chr1 5199533 5201345 + 4849748 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=6, step=1) Expected index RangeIndex(start=0, stop=6, step=1) index equal [ True True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpmxu6d4yc/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpmxu6d4yc/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpv1jkf6wm/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpv1jkf6wm/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp42tgjh1i/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp42tgjh1i/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpyn6fm690/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpyn6fm690/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp1cvovgh5/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp1cvovgh5/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp8tpip6j0/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp8tpip6j0/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp4gd04zhj/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp4gd04zhj/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 6609112 6609158 + 3390843 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 6609112 | 6609158 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 6609112 6609158 + 3390843 df2 Chromosome Start End Strand Distance 0 chr1 6609112 6609158 + 3390843 Actual Chromosome Start End Strand Distance 0 chr1 6609112 6609158 + 3390843 Expected Chromosome Start End Strand Distance 0 chr1 6609112 6609158 + 3390843 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=1, step=1) Expected index RangeIndex(start=0, stop=1, step=1) index equal [ True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpd8tkged4/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpd8tkged4/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 1 chr1 6609112 6609158 + 3390843 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 6609112 | 6609158 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 6609112 6609158 + 3390843 df2 Chromosome Start End Strand Distance 1 chr1 6609112 6609158 + 3390843 Actual Chromosome Start End Strand Distance 0 chr1 6609112 6609158 + 3390843 Expected Chromosome Start End Strand Distance 0 chr1 6609112 6609158 + 3390843 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=1, step=1) Expected index RangeIndex(start=0, stop=1, step=1) index equal [ True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpdrwfucm1/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpdrwfucm1/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 1 chr1 6609112 6609158 + 3390843 2 chr1 6609112 6609158 + 5967076 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 6609112 | 6609158 | a | 0 | ... | | chr1 | 6609112 | 6609158 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 6609112 6609158 + 3390843 1 chr1 6609112 6609158 + 5967076 df2 Chromosome Start End Strand Distance 1 chr1 6609112 6609158 + 3390843 2 chr1 6609112 6609158 + 5967076 Actual Chromosome Start End Strand Distance 0 chr1 6609112 6609158 + 3390843 1 chr1 6609112 6609158 + 5967076 Expected Chromosome Start End Strand Distance 0 chr1 6609112 6609158 + 3390843 1 chr1 6609112 6609158 + 5967076 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=2, step=1) Expected index RangeIndex(start=0, stop=2, step=1) index equal [ True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpbbmwei3u/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpbbmwei3u/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 636860 636861 - 636859 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 636860 | 636861 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 636860 636861 - 636859 df2 Chromosome Start End Strand Distance 0 chr1 636860 636861 - 636859 Actual Chromosome Start End Strand Distance 0 chr1 636860 636861 - 636859 Expected Chromosome Start End Strand Distance 0 chr1 636860 636861 - 636859 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=1, step=1) Expected index RangeIndex(start=0, stop=1, step=1) index equal [ True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmprk1rtgo7/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmprk1rtgo7/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 1 chr1 636860 636861 + 636859 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 636860 | 636861 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 636860 636861 + 636859 df2 Chromosome Start End Strand Distance 1 chr1 636860 636861 + 636859 Actual Chromosome Start End Strand Distance 0 chr1 636860 636861 + 636859 Expected Chromosome Start End Strand Distance 0 chr1 636860 636861 + 636859 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=1, step=1) Expected index RangeIndex(start=0, stop=1, step=1) index equal [ True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp8yo13lcd/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp8yo13lcd/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmprs9h594r/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmprs9h594r/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp_lochk91/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp_lochk91/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpgfk80p75/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpgfk80p75/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpxrcgt6a7/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpxrcgt6a7/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 608992 617970 + 608991 1 chr1 6083609 6092587 + 6083608 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 6083609 | 6092587 | a | 0 | ... | | chr1 | 608992 | 617970 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 1 chr1 608992 617970 + 608991 0 chr1 6083609 6092587 + 6083608 df2 Chromosome Start End Strand Distance 0 chr1 608992 617970 + 608991 1 chr1 6083609 6092587 + 6083608 Actual Chromosome Start End Strand Distance 0 chr1 608992 617970 + 608991 1 chr1 6083609 6092587 + 6083608 Expected Chromosome Start End Strand Distance 0 chr1 608992 617970 + 608991 1 chr1 6083609 6092587 + 6083608 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=2, step=1) Expected index RangeIndex(start=0, stop=2, step=1) index equal [ True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmphh8eid1r/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmphh8eid1r/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpkb4kl9qz/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpkb4kl9qz/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpvrhz4690/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpvrhz4690/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmppn_n2vii/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmppn_n2vii/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 4134392 4134393 + 2774083 1 chr1 4134392 4134393 + 2880894 3 chr1 5471486 5479521 + 4111177 4 chr1 5471486 5479521 + 4217988 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 5471486 | 5479521 | a | 0 | ... | | chr1 | 5471486 | 5479521 | a | 0 | ... | | chr1 | 4134392 | 4134393 | a | 0 | ... | | chr1 | 4134392 | 4134393 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 4 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 2 chr1 4134392 4134393 + 2774083 3 chr1 4134392 4134393 + 2880894 0 chr1 5471486 5479521 + 4111177 1 chr1 5471486 5479521 + 4217988 df2 Chromosome Start End Strand Distance 0 chr1 4134392 4134393 + 2774083 1 chr1 4134392 4134393 + 2880894 3 chr1 5471486 5479521 + 4111177 4 chr1 5471486 5479521 + 4217988 Actual Chromosome Start End Strand Distance 0 chr1 4134392 4134393 + 2774083 1 chr1 4134392 4134393 + 2880894 2 chr1 5471486 5479521 + 4111177 3 chr1 5471486 5479521 + 4217988 Expected Chromosome Start End Strand Distance 0 chr1 4134392 4134393 + 2774083 1 chr1 4134392 4134393 + 2880894 2 chr1 5471486 5479521 + 4111177 3 chr1 5471486 5479521 + 4217988 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=4, step=1) Expected index RangeIndex(start=0, stop=4, step=1) index equal [ True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpwtzs2_r5/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpwtzs2_r5/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpf732v48r/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpf732v48r/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp18patd9g/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp18patd9g/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpqrws9c6e/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpqrws9c6e/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpfh3z9yzo/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpfh3z9yzo/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 2391887 2401247 + 4550478 1 chr1 2579315 2582533 + 4369192 2 chr1 5187954 5192040 - 1759685 3 chr1 5589919 5589953 - 1361772 4 chr1 6212715 6215036 - 736689 5 chr1 6957341 6965160 - 4873 6 chr1 6980210 6986697 - 20386 7 chr1 6980210 6986697 - 27742 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 2579315 | 2582533 | a | 0 | ... | | chr1 | 2391887 | 2401247 | a | 0 | ... | | chr1 | 6212715 | 6215036 | a | 0 | ... | | chr1 | 5187954 | 5192040 | a | 0 | ... | | chr1 | 6980210 | 6986697 | a | 0 | ... | | chr1 | 6980210 | 6986697 | a | 0 | ... | | chr1 | 5589919 | 5589953 | a | 0 | ... | | chr1 | 6957341 | 6965160 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 8 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 1 chr1 2391887 2401247 + 4550478 0 chr1 2579315 2582533 + 4369192 3 chr1 5187954 5192040 - 1759685 6 chr1 5589919 5589953 - 1361772 2 chr1 6212715 6215036 - 736689 7 chr1 6957341 6965160 - 4873 4 chr1 6980210 6986697 - 20386 5 chr1 6980210 6986697 - 27742 df2 Chromosome Start End Strand Distance 0 chr1 2391887 2401247 + 4550478 1 chr1 2579315 2582533 + 4369192 2 chr1 5187954 5192040 - 1759685 3 chr1 5589919 5589953 - 1361772 4 chr1 6212715 6215036 - 736689 5 chr1 6957341 6965160 - 4873 6 chr1 6980210 6986697 - 20386 7 chr1 6980210 6986697 - 27742 Actual Chromosome Start End Strand Distance 0 chr1 2391887 2401247 + 4550478 1 chr1 2579315 2582533 + 4369192 2 chr1 5187954 5192040 - 1759685 3 chr1 5589919 5589953 - 1361772 4 chr1 6212715 6215036 - 736689 5 chr1 6957341 6965160 - 4873 6 chr1 6980210 6986697 - 20386 7 chr1 6980210 6986697 - 27742 Expected Chromosome Start End Strand Distance 0 chr1 2391887 2401247 + 4550478 1 chr1 2579315 2582533 + 4369192 2 chr1 5187954 5192040 - 1759685 3 chr1 5589919 5589953 - 1361772 4 chr1 6212715 6215036 - 736689 5 chr1 6957341 6965160 - 4873 6 chr1 6980210 6986697 - 20386 7 chr1 6980210 6986697 - 27742 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=8, step=1) Expected index RangeIndex(start=0, stop=8, step=1) index equal [ True True True True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpkb8hperr/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpkb8hperr/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 1 chr1 1 2 - 2 2 chr1 1 2 - 2 3 chr1 1 2 - 2 5 chr1 2 3 - 1 6 chr1 2 3 - 1 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 1 | 2 | a | 0 | ... | | chr1 | 1 | 2 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 1 | 2 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 7 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 1 2 - 2 1 chr1 1 2 - 2 6 chr1 1 2 - 2 2 chr1 2 3 - 1 3 chr1 2 3 - 1 4 chr1 2 3 - 1 5 chr1 2 3 - 1 df2 Chromosome Start End Strand Distance 1 chr1 1 2 - 2 2 chr1 1 2 - 2 3 chr1 1 2 - 2 5 chr1 2 3 - 1 6 chr1 2 3 - 1 Actual Chromosome Start End Strand Distance 0 chr1 1 2 - 2 1 chr1 1 2 - 2 2 chr1 1 2 - 2 3 chr1 2 3 - 1 4 chr1 2 3 - 1 5 chr1 2 3 - 1 6 chr1 2 3 - 1 Expected Chromosome Start End Strand Distance 0 chr1 1 2 - 2 1 chr1 1 2 - 2 2 chr1 1 2 - 2 3 chr1 2 3 - 1 4 chr1 2 3 - 1 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=7, step=1) Expected index RangeIndex(start=0, stop=5, step=1) ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp39xjc9oq/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp39xjc9oq/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 1 chr1 1 2 - 2 2 chr1 1 2 - 2 3 chr1 1 2 - 2 5 chr1 2 3 - 1 6 chr1 2 3 - 1 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 1 | 2 | a | 0 | ... | | chr1 | 1 | 2 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 1 | 2 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 7 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 1 2 - 2 1 chr1 1 2 - 2 6 chr1 1 2 - 2 2 chr1 2 3 - 1 3 chr1 2 3 - 1 4 chr1 2 3 - 1 5 chr1 2 3 - 1 df2 Chromosome Start End Strand Distance 1 chr1 1 2 - 2 2 chr1 1 2 - 2 3 chr1 1 2 - 2 5 chr1 2 3 - 1 6 chr1 2 3 - 1 Actual Chromosome Start End Strand Distance 0 chr1 1 2 - 2 1 chr1 1 2 - 2 2 chr1 1 2 - 2 3 chr1 2 3 - 1 4 chr1 2 3 - 1 5 chr1 2 3 - 1 6 chr1 2 3 - 1 Expected Chromosome Start End Strand Distance 0 chr1 1 2 - 2 1 chr1 1 2 - 2 2 chr1 1 2 - 2 3 chr1 2 3 - 1 4 chr1 2 3 - 1 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=7, step=1) Expected index RangeIndex(start=0, stop=5, step=1) ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpwjw1996a/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpwjw1996a/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 1 chr1 1 2 - 2 2 chr1 1 2 - 2 3 chr1 1 2 - 2 5 chr1 2 3 - 1 6 chr1 2 3 - 1 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 1 | 2 | a | 0 | ... | | chr1 | 1 | 2 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 1 | 2 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 7 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 1 2 - 2 1 chr1 1 2 - 2 6 chr1 1 2 - 2 2 chr1 2 3 - 1 3 chr1 2 3 - 1 4 chr1 2 3 - 1 5 chr1 2 3 - 1 df2 Chromosome Start End Strand Distance 1 chr1 1 2 - 2 2 chr1 1 2 - 2 3 chr1 1 2 - 2 5 chr1 2 3 - 1 6 chr1 2 3 - 1 Actual Chromosome Start End Strand Distance 0 chr1 1 2 - 2 1 chr1 1 2 - 2 2 chr1 1 2 - 2 3 chr1 2 3 - 1 4 chr1 2 3 - 1 5 chr1 2 3 - 1 6 chr1 2 3 - 1 Expected Chromosome Start End Strand Distance 0 chr1 1 2 - 2 1 chr1 1 2 - 2 2 chr1 1 2 - 2 3 chr1 2 3 - 1 4 chr1 2 3 - 1 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=7, step=1) Expected index RangeIndex(start=0, stop=5, step=1) ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp0nt_95tm/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp0nt_95tm/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 1 2 + 1 1 chr1 1 2 - 1 2 chr1 1 2 - 1 3 chr1 1 2 - 1 4 chr1 2 3 + 1 5 chr1 2 3 - 1 6 chr1 2 3 - 1 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 1 | 2 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 1 | 2 | a | 0 | ... | | chr1 | 1 | 2 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 1 | 2 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 7 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 1 2 + 1 2 chr1 1 2 - 1 3 chr1 1 2 - 1 6 chr1 1 2 - 1 1 chr1 2 3 + 1 4 chr1 2 3 - 1 5 chr1 2 3 - 1 df2 Chromosome Start End Strand Distance 0 chr1 1 2 + 1 1 chr1 1 2 - 1 2 chr1 1 2 - 1 3 chr1 1 2 - 1 4 chr1 2 3 + 1 5 chr1 2 3 - 1 6 chr1 2 3 - 1 Actual Chromosome Start End Strand Distance 0 chr1 1 2 + 1 1 chr1 1 2 - 1 2 chr1 1 2 - 1 3 chr1 1 2 - 1 4 chr1 2 3 + 1 5 chr1 2 3 - 1 6 chr1 2 3 - 1 Expected Chromosome Start End Strand Distance 0 chr1 1 2 + 1 1 chr1 1 2 - 1 2 chr1 1 2 - 1 3 chr1 1 2 - 1 4 chr1 2 3 + 1 5 chr1 2 3 - 1 6 chr1 2 3 - 1 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=7, step=1) Expected index RangeIndex(start=0, stop=7, step=1) index equal [ True True True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpg6_t8cme/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpg6_t8cme/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 1 2 + 2 4 chr1 2 3 + 1 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 1 | 2 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 3 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 1 2 + 2 1 chr1 2 3 + 1 2 chr1 2 3 + 1 df2 Chromosome Start End Strand Distance 0 chr1 1 2 + 2 4 chr1 2 3 + 1 Actual Chromosome Start End Strand Distance 0 chr1 1 2 + 2 1 chr1 2 3 + 1 2 chr1 2 3 + 1 Expected Chromosome Start End Strand Distance 0 chr1 1 2 + 2 1 chr1 2 3 + 1 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=3, step=1) Expected index RangeIndex(start=0, stop=2, step=1) ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp35ervxuo/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp35ervxuo/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp37swx6zz/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp37swx6zz/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 1 chr1 4319346 4323138 - 1883593 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 4319346 | 4323138 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 4319346 4323138 - 1883593 df2 Chromosome Start End Strand Distance 1 chr1 4319346 4323138 - 1883593 Actual Chromosome Start End Strand Distance 0 chr1 4319346 4323138 - 1883593 Expected Chromosome Start End Strand Distance 0 chr1 4319346 4323138 - 1883593 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=1, step=1) Expected index RangeIndex(start=0, stop=1, step=1) index equal [ True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp349ss66y/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp349ss66y/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpdl69zdlm/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpdl69zdlm/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp2hdc931e/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp2hdc931e/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmps2aap7vo/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmps2aap7vo/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpi55rn9ap/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpi55rn9ap/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpbg2_4tgm/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpbg2_4tgm/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpe9ov1vk8/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpe9ov1vk8/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 7000313 7002341 + 1422243 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 7000313 | 7002341 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 7000313 7002341 + 1422243 df2 Chromosome Start End Strand Distance 0 chr1 7000313 7002341 + 1422243 Actual Chromosome Start End Strand Distance 0 chr1 7000313 7002341 + 1422243 Expected Chromosome Start End Strand Distance 0 chr1 7000313 7002341 + 1422243 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=1, step=1) Expected index RangeIndex(start=0, stop=1, step=1) index equal [ True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpuqgeey2x/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpuqgeey2x/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 7000313 7002341 + 831728 1 chr1 7000313 7002341 + 2514066 7 chr6 10000000 10005101 + 5252061 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 7000313 | 7002341 | a | 0 | ... | | chr1 | 7000313 | 7002341 | a | 0 | ... | | chr6 | 10000000 | 10005101 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 3 rows and 12 columns from 2 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 7000313 7002341 + 831728 1 chr1 7000313 7002341 + 2514066 2 chr6 10000000 10005101 + 5252061 df2 Chromosome Start End Strand Distance 0 chr1 7000313 7002341 + 831728 1 chr1 7000313 7002341 + 2514066 7 chr6 10000000 10005101 + 5252061 Actual Chromosome Start End Strand Distance 0 chr1 7000313 7002341 + 831728 1 chr1 7000313 7002341 + 2514066 2 chr6 10000000 10005101 + 5252061 Expected Chromosome Start End Strand Distance 0 chr1 7000313 7002341 + 831728 1 chr1 7000313 7002341 + 2514066 2 chr6 10000000 10005101 + 5252061 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=3, step=1) Expected index RangeIndex(start=0, stop=3, step=1) index equal [ True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp8w3irlkt/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp8w3irlkt/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 7000313 7002341 + 831728 1 chr1 7000313 7002341 + 2514066 3 chr18 3928662 3930690 + 3713310 7 chr6 10000000 10005101 + 5252061 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 7000313 | 7002341 | a | 0 | ... | | chr1 | 7000313 | 7002341 | a | 0 | ... | | chr6 | 10000000 | 10005101 | a | 0 | ... | | chr18 | 3928662 | 3930690 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 4 rows and 12 columns from 3 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 3 chr18 3928662 3930690 + 3713310 0 chr1 7000313 7002341 + 831728 1 chr1 7000313 7002341 + 2514066 2 chr6 10000000 10005101 + 5252061 df2 Chromosome Start End Strand Distance 3 chr18 3928662 3930690 + 3713310 0 chr1 7000313 7002341 + 831728 1 chr1 7000313 7002341 + 2514066 7 chr6 10000000 10005101 + 5252061 Actual Chromosome Start End Strand Distance 0 chr1 7000313 7002341 + 831728 1 chr1 7000313 7002341 + 2514066 2 chr18 3928662 3930690 + 3713310 3 chr6 10000000 10005101 + 5252061 Expected Chromosome Start End Strand Distance 0 chr1 7000313 7002341 + 831728 1 chr1 7000313 7002341 + 2514066 2 chr18 3928662 3930690 + 3713310 3 chr6 10000000 10005101 + 5252061 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=4, step=1) Expected index RangeIndex(start=0, stop=4, step=1) index equal [ True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpuh6vvfjd/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpuh6vvfjd/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 5 chr2 17 18 + 16 6 chr2 17 18 + 16 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr2 | 17 | 18 | a | 0 | ... | | chr2 | 17 | 18 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr2 17 18 + 16 1 chr2 17 18 + 16 df2 Chromosome Start End Strand Distance 5 chr2 17 18 + 16 6 chr2 17 18 + 16 Actual Chromosome Start End Strand Distance 0 chr2 17 18 + 16 1 chr2 17 18 + 16 Expected Chromosome Start End Strand Distance 0 chr2 17 18 + 16 1 chr2 17 18 + 16 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=2, step=1) Expected index RangeIndex(start=0, stop=2, step=1) index equal [ True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp_t5dlwky/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp_t5dlwky/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 3 4 + 14 4 chr1 17 18 - 14 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 3 | 4 | a | 0 | ... | | chr1 | 17 | 18 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 3 4 + 14 1 chr1 17 18 - 14 df2 Chromosome Start End Strand Distance 0 chr1 3 4 + 14 4 chr1 17 18 - 14 Actual Chromosome Start End Strand Distance 0 chr1 3 4 + 14 1 chr1 17 18 - 14 Expected Chromosome Start End Strand Distance 0 chr1 3 4 + 14 1 chr1 17 18 - 14 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=2, step=1) Expected index RangeIndex(start=0, stop=2, step=1) index equal [ True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpf6jgkcag/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpf6jgkcag/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpibajwfgk/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpibajwfgk/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 115779 123397 + 1368579 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 115779 | 123397 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 115779 123397 + 1368579 df2 Chromosome Start End Strand Distance 0 chr1 115779 123397 + 1368579 Actual Chromosome Start End Strand Distance 0 chr1 115779 123397 + 1368579 Expected Chromosome Start End Strand Distance 0 chr1 115779 123397 + 1368579 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=1, step=1) Expected index RangeIndex(start=0, stop=1, step=1) index equal [ True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpqfoimbu7/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpqfoimbu7/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 26102 26104 + 1465872 1 chr1 225848 233386 + 1258590 2 chr1 1491975 1501799 - 95683 3 chr1 1491975 1501799 - 567932 4 chr1 1597481 1604806 + 95683 5 chr1 2069730 2073149 + 567932 6 chr1 3696333 3698956 + 2194535 7 chr1 7172683 7180694 + 5670885 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 7172683 | 7180694 | a | 0 | ... | | chr1 | 2069730 | 2073149 | a | 0 | ... | | chr1 | 3696333 | 3698956 | a | 0 | ... | | chr1 | 225848 | 233386 | a | 0 | ... | | chr1 | 1597481 | 1604806 | a | 0 | ... | | chr1 | 26102 | 26104 | a | 0 | ... | | chr1 | 1491975 | 1501799 | a | 0 | ... | | chr1 | 1491975 | 1501799 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 8 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 5 chr1 26102 26104 + 1465872 3 chr1 225848 233386 + 1258590 6 chr1 1491975 1501799 - 95683 7 chr1 1491975 1501799 - 567932 4 chr1 1597481 1604806 + 95683 1 chr1 2069730 2073149 + 567932 2 chr1 3696333 3698956 + 2194535 0 chr1 7172683 7180694 + 5670885 df2 Chromosome Start End Strand Distance 0 chr1 26102 26104 + 1465872 1 chr1 225848 233386 + 1258590 2 chr1 1491975 1501799 - 95683 3 chr1 1491975 1501799 - 567932 4 chr1 1597481 1604806 + 95683 5 chr1 2069730 2073149 + 567932 6 chr1 3696333 3698956 + 2194535 7 chr1 7172683 7180694 + 5670885 Actual Chromosome Start End Strand Distance 0 chr1 26102 26104 + 1465872 1 chr1 225848 233386 + 1258590 2 chr1 1491975 1501799 - 95683 3 chr1 1491975 1501799 - 567932 4 chr1 1597481 1604806 + 95683 5 chr1 2069730 2073149 + 567932 6 chr1 3696333 3698956 + 2194535 7 chr1 7172683 7180694 + 5670885 Expected Chromosome Start End Strand Distance 0 chr1 26102 26104 + 1465872 1 chr1 225848 233386 + 1258590 2 chr1 1491975 1501799 - 95683 3 chr1 1491975 1501799 - 567932 4 chr1 1597481 1604806 + 95683 5 chr1 2069730 2073149 + 567932 6 chr1 3696333 3698956 + 2194535 7 chr1 7172683 7180694 + 5670885 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=8, step=1) Expected index RangeIndex(start=0, stop=8, step=1) index equal [ True True True True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpeelclumg/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpeelclumg/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 26102 26104 + 1465872 1 chr1 225848 233386 + 1258590 2 chr1 1491975 1501799 - 95683 3 chr1 1491975 1501799 - 567932 4 chr1 1597481 1604806 + 99678 5 chr1 2069730 2073149 + 571927 6 chr1 3696333 3698956 + 2198530 7 chr1 7172683 7180694 + 5674880 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 7172683 | 7180694 | a | 0 | ... | | chr1 | 2069730 | 2073149 | a | 0 | ... | | chr1 | 3696333 | 3698956 | a | 0 | ... | | chr1 | 225848 | 233386 | a | 0 | ... | | chr1 | 1597481 | 1604806 | a | 0 | ... | | chr1 | 26102 | 26104 | a | 0 | ... | | chr1 | 1491975 | 1501799 | a | 0 | ... | | chr1 | 1491975 | 1501799 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 8 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 5 chr1 26102 26104 + 1465872 3 chr1 225848 233386 + 1258590 6 chr1 1491975 1501799 - 95683 7 chr1 1491975 1501799 - 567932 4 chr1 1597481 1604806 + 99678 1 chr1 2069730 2073149 + 571927 2 chr1 3696333 3698956 + 2198530 0 chr1 7172683 7180694 + 5674880 df2 Chromosome Start End Strand Distance 0 chr1 26102 26104 + 1465872 1 chr1 225848 233386 + 1258590 2 chr1 1491975 1501799 - 95683 3 chr1 1491975 1501799 - 567932 4 chr1 1597481 1604806 + 99678 5 chr1 2069730 2073149 + 571927 6 chr1 3696333 3698956 + 2198530 7 chr1 7172683 7180694 + 5674880 Actual Chromosome Start End Strand Distance 0 chr1 26102 26104 + 1465872 1 chr1 225848 233386 + 1258590 2 chr1 1491975 1501799 - 95683 3 chr1 1491975 1501799 - 567932 4 chr1 1597481 1604806 + 99678 5 chr1 2069730 2073149 + 571927 6 chr1 3696333 3698956 + 2198530 7 chr1 7172683 7180694 + 5674880 Expected Chromosome Start End Strand Distance 0 chr1 26102 26104 + 1465872 1 chr1 225848 233386 + 1258590 2 chr1 1491975 1501799 - 95683 3 chr1 1491975 1501799 - 567932 4 chr1 1597481 1604806 + 99678 5 chr1 2069730 2073149 + 571927 6 chr1 3696333 3698956 + 2198530 7 chr1 7172683 7180694 + 5674880 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=8, step=1) Expected index RangeIndex(start=0, stop=8, step=1) index equal [ True True True True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpiwl9209n/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpiwl9209n/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 26102 26204 + 1465772 1 chr1 225848 226731 + 1265245 2 chr1 1491975 1497804 - 99678 3 chr1 1491975 1497804 - 571927 4 chr1 1597481 1603722 + 99678 5 chr1 2069730 2077815 + 571927 6 chr1 3696333 3699406 + 2198530 7 chr1 7172683 7175244 + 5674880 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 7172683 | 7175244 | a | 0 | ... | | chr1 | 2069730 | 2077815 | a | 0 | ... | | chr1 | 3696333 | 3699406 | a | 0 | ... | | chr1 | 225848 | 226731 | a | 0 | ... | | chr1 | 1597481 | 1603722 | a | 0 | ... | | chr1 | 26102 | 26204 | a | 0 | ... | | chr1 | 1491975 | 1497804 | a | 0 | ... | | chr1 | 1491975 | 1497804 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 8 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 5 chr1 26102 26204 + 1465772 3 chr1 225848 226731 + 1265245 6 chr1 1491975 1497804 - 99678 7 chr1 1491975 1497804 - 571927 4 chr1 1597481 1603722 + 99678 1 chr1 2069730 2077815 + 571927 2 chr1 3696333 3699406 + 2198530 0 chr1 7172683 7175244 + 5674880 df2 Chromosome Start End Strand Distance 0 chr1 26102 26204 + 1465772 1 chr1 225848 226731 + 1265245 2 chr1 1491975 1497804 - 99678 3 chr1 1491975 1497804 - 571927 4 chr1 1597481 1603722 + 99678 5 chr1 2069730 2077815 + 571927 6 chr1 3696333 3699406 + 2198530 7 chr1 7172683 7175244 + 5674880 Actual Chromosome Start End Strand Distance 0 chr1 26102 26204 + 1465772 1 chr1 225848 226731 + 1265245 2 chr1 1491975 1497804 - 99678 3 chr1 1491975 1497804 - 571927 4 chr1 1597481 1603722 + 99678 5 chr1 2069730 2077815 + 571927 6 chr1 3696333 3699406 + 2198530 7 chr1 7172683 7175244 + 5674880 Expected Chromosome Start End Strand Distance 0 chr1 26102 26204 + 1465772 1 chr1 225848 226731 + 1265245 2 chr1 1491975 1497804 - 99678 3 chr1 1491975 1497804 - 571927 4 chr1 1597481 1603722 + 99678 5 chr1 2069730 2077815 + 571927 6 chr1 3696333 3699406 + 2198530 7 chr1 7172683 7175244 + 5674880 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=8, step=1) Expected index RangeIndex(start=0, stop=8, step=1) index equal [ True True True True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp1tug079a/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp1tug079a/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 26102 26204 + 199645 1 chr1 26102 26204 + 1571278 2 chr1 225848 226731 + 199645 3 chr1 225848 226731 + 1370751 4 chr1 1491975 1497804 - 571927 5 chr1 1491975 1497804 - 2198530 6 chr1 1597481 1603722 + 1370751 7 chr1 1597481 1603722 + 1571278 8 chr1 2069730 2077815 + 466009 9 chr1 2069730 2077815 + 1843000 10 chr1 3696333 3699406 + 2092612 11 chr1 3696333 3699406 + 3469603 12 chr1 7172683 7175244 + 5568962 13 chr1 7172683 7175244 + 6945953 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 7172683 | 7175244 | a | 0 | ... | | chr1 | 7172683 | 7175244 | a | 0 | ... | | chr1 | 2069730 | 2077815 | a | 0 | ... | | chr1 | 2069730 | 2077815 | a | 0 | ... | | ... | ... | ... | ... | ... | ... | | chr1 | 26102 | 26204 | a | 0 | ... | | chr1 | 26102 | 26204 | a | 0 | ... | | chr1 | 1491975 | 1497804 | a | 0 | ... | | chr1 | 1491975 | 1497804 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 14 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 10 chr1 26102 26204 + 199645 11 chr1 26102 26204 + 1571278 6 chr1 225848 226731 + 199645 7 chr1 225848 226731 + 1370751 12 chr1 1491975 1497804 - 571927 13 chr1 1491975 1497804 - 2198530 8 chr1 1597481 1603722 + 1370751 9 chr1 1597481 1603722 + 1571278 2 chr1 2069730 2077815 + 466009 3 chr1 2069730 2077815 + 1843000 4 chr1 3696333 3699406 + 2092612 5 chr1 3696333 3699406 + 3469603 0 chr1 7172683 7175244 + 5568962 1 chr1 7172683 7175244 + 6945953 df2 Chromosome Start End Strand Distance 0 chr1 26102 26204 + 199645 1 chr1 26102 26204 + 1571278 2 chr1 225848 226731 + 199645 3 chr1 225848 226731 + 1370751 4 chr1 1491975 1497804 - 571927 5 chr1 1491975 1497804 - 2198530 6 chr1 1597481 1603722 + 1370751 7 chr1 1597481 1603722 + 1571278 8 chr1 2069730 2077815 + 466009 9 chr1 2069730 2077815 + 1843000 10 chr1 3696333 3699406 + 2092612 11 chr1 3696333 3699406 + 3469603 12 chr1 7172683 7175244 + 5568962 13 chr1 7172683 7175244 + 6945953 Actual Chromosome Start End Strand Distance 0 chr1 26102 26204 + 199645 1 chr1 26102 26204 + 1571278 2 chr1 225848 226731 + 199645 3 chr1 225848 226731 + 1370751 4 chr1 1491975 1497804 - 571927 5 chr1 1491975 1497804 - 2198530 6 chr1 1597481 1603722 + 1370751 7 chr1 1597481 1603722 + 1571278 8 chr1 2069730 2077815 + 466009 9 chr1 2069730 2077815 + 1843000 10 chr1 3696333 3699406 + 2092612 11 chr1 3696333 3699406 + 3469603 12 chr1 7172683 7175244 + 5568962 13 chr1 7172683 7175244 + 6945953 Expected Chromosome Start End Strand Distance 0 chr1 26102 26204 + 199645 1 chr1 26102 26204 + 1571278 2 chr1 225848 226731 + 199645 3 chr1 225848 226731 + 1370751 4 chr1 1491975 1497804 - 571927 5 chr1 1491975 1497804 - 2198530 6 chr1 1597481 1603722 + 1370751 7 chr1 1597481 1603722 + 1571278 8 chr1 2069730 2077815 + 466009 9 chr1 2069730 2077815 + 1843000 10 chr1 3696333 3699406 + 2092612 11 chr1 3696333 3699406 + 3469603 12 chr1 7172683 7175244 + 5568962 13 chr1 7172683 7175244 + 6945953 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=14, step=1) Expected index RangeIndex(start=0, stop=14, step=1) index equal [ True True True True True True True True True True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp1utvf1rr/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp1utvf1rr/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp5xj5jrqw/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp5xj5jrqw/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpre188_ni/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpre188_ni/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpnfc1hqmm/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpnfc1hqmm/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpan9791j0/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpan9791j0/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpor0cfezf/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpor0cfezf/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 8109416 8111762 + 5138651 1 chr1 8109416 8111762 + 6726454 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 8109416 | 8111762 | a | 0 | ... | | chr1 | 8109416 | 8111762 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 8109416 8111762 + 5138651 1 chr1 8109416 8111762 + 6726454 df2 Chromosome Start End Strand Distance 0 chr1 8109416 8111762 + 5138651 1 chr1 8109416 8111762 + 6726454 Actual Chromosome Start End Strand Distance 0 chr1 8109416 8111762 + 5138651 1 chr1 8109416 8111762 + 6726454 Expected Chromosome Start End Strand Distance 0 chr1 8109416 8111762 + 5138651 1 chr1 8109416 8111762 + 6726454 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=2, step=1) Expected index RangeIndex(start=0, stop=2, step=1) index equal [ True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpj13e274w/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpj13e274w/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 8109416 8111762 + 8109415 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 8109416 | 8111762 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 8109416 8111762 + 8109415 df2 Chromosome Start End Strand Distance 0 chr1 8109416 8111762 + 8109415 Actual Chromosome Start End Strand Distance 0 chr1 8109416 8111762 + 8109415 Expected Chromosome Start End Strand Distance 0 chr1 8109416 8111762 + 8109415 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=1, step=1) Expected index RangeIndex(start=0, stop=1, step=1) index equal [ True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp6d7158lh/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp6d7158lh/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 8109416 8111762 + 8109415 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 8109416 | 8111762 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 8109416 8111762 + 8109415 df2 Chromosome Start End Strand Distance 0 chr1 8109416 8111762 + 8109415 Actual Chromosome Start End Strand Distance 0 chr1 8109416 8111762 + 8109415 Expected Chromosome Start End Strand Distance 0 chr1 8109416 8111762 + 8109415 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=1, step=1) Expected index RangeIndex(start=0, stop=1, step=1) index equal [ True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp0stt9gje/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp0stt9gje/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpr4bzpmwa/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpr4bzpmwa/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmptxrpxj4q/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmptxrpxj4q/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmptjo9qzux/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmptjo9qzux/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 8 chr11 697329 707080 + 3001971 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr11 | 697329 | 707080 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr11 697329 707080 + 3001971 df2 Chromosome Start End Strand Distance 8 chr11 697329 707080 + 3001971 Actual Chromosome Start End Strand Distance 0 chr11 697329 707080 + 3001971 Expected Chromosome Start End Strand Distance 0 chr11 697329 707080 + 3001971 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=1, step=1) Expected index RangeIndex(start=0, stop=1, step=1) index equal [ True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpl3_mxeye/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpl3_mxeye/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpfhah5y86/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpfhah5y86/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp6ubup_pf/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp6ubup_pf/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 10762 10764 - 686566 1 chr1 10762 10764 - 4095895 2 chr1 697329 707080 + 686566 3 chr1 697329 707080 + 1616859 4 chr1 2323938 2324185 - 1616859 5 chr1 2323938 2324185 - 1782474 6 chr1 4106658 4113148 + 504460 7 chr1 4106658 4113148 + 1782474 8 chr1 4617607 4618446 - 504460 9 chr1 4617607 4618446 - 1581473 10 chr1 6199918 6206482 + 1581473 11 chr1 6199918 6206482 + 2482474 12 chr1 7283391 7283782 + 1405174 13 chr1 7283391 7283782 + 2307602 14 chr1 7499578 7504553 + 1184403 15 chr1 7499578 7504553 + 2086831 16 chr1 8688955 8692928 - 88945 17 chr1 8688955 8692928 - 1184403 18 chr1 8781872 8789639 + 88945 19 chr1 8781872 8789639 + 801745 20 chr1 9591383 9598964 - 801745 21 chr1 9591383 9598964 - 2086831 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 8781872 | 8789639 | a | 0 | ... | | chr1 | 8781872 | 8789639 | a | 0 | ... | | chr1 | 4106658 | 4113148 | a | 0 | ... | | chr1 | 4106658 | 4113148 | a | 0 | ... | | ... | ... | ... | ... | ... | ... | | chr1 | 4617607 | 4618446 | a | 0 | ... | | chr1 | 4617607 | 4618446 | a | 0 | ... | | chr1 | 2323938 | 2324185 | a | 0 | ... | | chr1 | 2323938 | 2324185 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 22 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 16 chr1 10762 10764 - 686566 17 chr1 10762 10764 - 4095895 6 chr1 697329 707080 + 686566 7 chr1 697329 707080 + 1616859 20 chr1 2323938 2324185 - 1616859 21 chr1 2323938 2324185 - 1782474 2 chr1 4106658 4113148 + 504460 3 chr1 4106658 4113148 + 1782474 18 chr1 4617607 4618446 - 504460 19 chr1 4617607 4618446 - 1581473 8 chr1 6199918 6206482 + 1581473 9 chr1 6199918 6206482 + 2482474 10 chr1 7283391 7283782 + 1405174 11 chr1 7283391 7283782 + 2307602 4 chr1 7499578 7504553 + 1184403 5 chr1 7499578 7504553 + 2086831 14 chr1 8688955 8692928 - 88945 15 chr1 8688955 8692928 - 1184403 0 chr1 8781872 8789639 + 88945 1 chr1 8781872 8789639 + 801745 12 chr1 9591383 9598964 - 801745 13 chr1 9591383 9598964 - 2086831 df2 Chromosome Start End Strand Distance 0 chr1 10762 10764 - 686566 1 chr1 10762 10764 - 4095895 2 chr1 697329 707080 + 686566 3 chr1 697329 707080 + 1616859 4 chr1 2323938 2324185 - 1616859 5 chr1 2323938 2324185 - 1782474 6 chr1 4106658 4113148 + 504460 7 chr1 4106658 4113148 + 1782474 8 chr1 4617607 4618446 - 504460 9 chr1 4617607 4618446 - 1581473 10 chr1 6199918 6206482 + 1581473 11 chr1 6199918 6206482 + 2482474 12 chr1 7283391 7283782 + 1405174 13 chr1 7283391 7283782 + 2307602 14 chr1 7499578 7504553 + 1184403 15 chr1 7499578 7504553 + 2086831 16 chr1 8688955 8692928 - 88945 17 chr1 8688955 8692928 - 1184403 18 chr1 8781872 8789639 + 88945 19 chr1 8781872 8789639 + 801745 20 chr1 9591383 9598964 - 801745 21 chr1 9591383 9598964 - 2086831 Actual Chromosome Start End Strand Distance 0 chr1 10762 10764 - 686566 1 chr1 10762 10764 - 4095895 2 chr1 697329 707080 + 686566 3 chr1 697329 707080 + 1616859 4 chr1 2323938 2324185 - 1616859 5 chr1 2323938 2324185 - 1782474 6 chr1 4106658 4113148 + 504460 7 chr1 4106658 4113148 + 1782474 8 chr1 4617607 4618446 - 504460 9 chr1 4617607 4618446 - 1581473 10 chr1 6199918 6206482 + 1581473 11 chr1 6199918 6206482 + 2482474 12 chr1 7283391 7283782 + 1405174 13 chr1 7283391 7283782 + 2307602 14 chr1 7499578 7504553 + 1184403 15 chr1 7499578 7504553 + 2086831 16 chr1 8688955 8692928 - 88945 17 chr1 8688955 8692928 - 1184403 18 chr1 8781872 8789639 + 88945 19 chr1 8781872 8789639 + 801745 20 chr1 9591383 9598964 - 801745 21 chr1 9591383 9598964 - 2086831 Expected Chromosome Start End Strand Distance 0 chr1 10762 10764 - 686566 1 chr1 10762 10764 - 4095895 2 chr1 697329 707080 + 686566 3 chr1 697329 707080 + 1616859 4 chr1 2323938 2324185 - 1616859 5 chr1 2323938 2324185 - 1782474 6 chr1 4106658 4113148 + 504460 7 chr1 4106658 4113148 + 1782474 8 chr1 4617607 4618446 - 504460 9 chr1 4617607 4618446 - 1581473 10 chr1 6199918 6206482 + 1581473 11 chr1 6199918 6206482 + 2482474 12 chr1 7283391 7283782 + 1405174 13 chr1 7283391 7283782 + 2307602 14 chr1 7499578 7504553 + 1184403 15 chr1 7499578 7504553 + 2086831 16 chr1 8688955 8692928 - 88945 17 chr1 8688955 8692928 - 1184403 18 chr1 8781872 8789639 + 88945 19 chr1 8781872 8789639 + 801745 20 chr1 9591383 9598964 - 801745 21 chr1 9591383 9598964 - 2086831 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=22, step=1) Expected index RangeIndex(start=0, stop=22, step=1) index equal [ True True True True True True True True True True True True True True True True True True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpva3oqq1n/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpva3oqq1n/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 10762 10764 - 686566 1 chr1 10762 10764 - 4095895 2 chr1 697329 707080 + 686566 3 chr1 697329 707080 + 1616859 4 chr1 2323938 2324185 - 1616859 5 chr1 2323938 2324185 - 1782474 6 chr1 4106658 4113148 + 504460 7 chr1 4106658 4113148 + 1782474 8 chr1 4617607 4618446 - 504460 9 chr1 4617607 4618446 - 1581473 10 chr1 6199918 6206482 + 1581473 11 chr1 6199918 6206482 + 2482474 12 chr1 7283391 7283782 + 1405174 13 chr1 7283391 7283782 + 2307602 14 chr1 7499578 7504553 + 1184403 15 chr1 7499578 7504553 + 2086831 16 chr1 8688955 8692928 - 88945 17 chr1 8688955 8692928 - 1184403 18 chr1 8781872 8789639 + 88945 19 chr1 8781872 8789639 + 801745 20 chr1 9591383 9598964 - 801745 21 chr1 9591383 9598964 - 2086831 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 8781872 | 8789639 | a | 0 | ... | | chr1 | 8781872 | 8789639 | a | 0 | ... | | chr1 | 4106658 | 4113148 | a | 0 | ... | | chr1 | 4106658 | 4113148 | a | 0 | ... | | ... | ... | ... | ... | ... | ... | | chr1 | 4617607 | 4618446 | a | 0 | ... | | chr1 | 4617607 | 4618446 | a | 0 | ... | | chr1 | 2323938 | 2324185 | a | 0 | ... | | chr1 | 2323938 | 2324185 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 22 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 16 chr1 10762 10764 - 686566 17 chr1 10762 10764 - 4095895 6 chr1 697329 707080 + 686566 7 chr1 697329 707080 + 1616859 20 chr1 2323938 2324185 - 1616859 21 chr1 2323938 2324185 - 1782474 2 chr1 4106658 4113148 + 504460 3 chr1 4106658 4113148 + 1782474 18 chr1 4617607 4618446 - 504460 19 chr1 4617607 4618446 - 1581473 8 chr1 6199918 6206482 + 1581473 9 chr1 6199918 6206482 + 2482474 10 chr1 7283391 7283782 + 1405174 11 chr1 7283391 7283782 + 2307602 4 chr1 7499578 7504553 + 1184403 5 chr1 7499578 7504553 + 2086831 14 chr1 8688955 8692928 - 88945 15 chr1 8688955 8692928 - 1184403 0 chr1 8781872 8789639 + 88945 1 chr1 8781872 8789639 + 801745 12 chr1 9591383 9598964 - 801745 13 chr1 9591383 9598964 - 2086831 df2 Chromosome Start End Strand Distance 0 chr1 10762 10764 - 686566 1 chr1 10762 10764 - 4095895 2 chr1 697329 707080 + 686566 3 chr1 697329 707080 + 1616859 4 chr1 2323938 2324185 - 1616859 5 chr1 2323938 2324185 - 1782474 6 chr1 4106658 4113148 + 504460 7 chr1 4106658 4113148 + 1782474 8 chr1 4617607 4618446 - 504460 9 chr1 4617607 4618446 - 1581473 10 chr1 6199918 6206482 + 1581473 11 chr1 6199918 6206482 + 2482474 12 chr1 7283391 7283782 + 1405174 13 chr1 7283391 7283782 + 2307602 14 chr1 7499578 7504553 + 1184403 15 chr1 7499578 7504553 + 2086831 16 chr1 8688955 8692928 - 88945 17 chr1 8688955 8692928 - 1184403 18 chr1 8781872 8789639 + 88945 19 chr1 8781872 8789639 + 801745 20 chr1 9591383 9598964 - 801745 21 chr1 9591383 9598964 - 2086831 Actual Chromosome Start End Strand Distance 0 chr1 10762 10764 - 686566 1 chr1 10762 10764 - 4095895 2 chr1 697329 707080 + 686566 3 chr1 697329 707080 + 1616859 4 chr1 2323938 2324185 - 1616859 5 chr1 2323938 2324185 - 1782474 6 chr1 4106658 4113148 + 504460 7 chr1 4106658 4113148 + 1782474 8 chr1 4617607 4618446 - 504460 9 chr1 4617607 4618446 - 1581473 10 chr1 6199918 6206482 + 1581473 11 chr1 6199918 6206482 + 2482474 12 chr1 7283391 7283782 + 1405174 13 chr1 7283391 7283782 + 2307602 14 chr1 7499578 7504553 + 1184403 15 chr1 7499578 7504553 + 2086831 16 chr1 8688955 8692928 - 88945 17 chr1 8688955 8692928 - 1184403 18 chr1 8781872 8789639 + 88945 19 chr1 8781872 8789639 + 801745 20 chr1 9591383 9598964 - 801745 21 chr1 9591383 9598964 - 2086831 Expected Chromosome Start End Strand Distance 0 chr1 10762 10764 - 686566 1 chr1 10762 10764 - 4095895 2 chr1 697329 707080 + 686566 3 chr1 697329 707080 + 1616859 4 chr1 2323938 2324185 - 1616859 5 chr1 2323938 2324185 - 1782474 6 chr1 4106658 4113148 + 504460 7 chr1 4106658 4113148 + 1782474 8 chr1 4617607 4618446 - 504460 9 chr1 4617607 4618446 - 1581473 10 chr1 6199918 6206482 + 1581473 11 chr1 6199918 6206482 + 2482474 12 chr1 7283391 7283782 + 1405174 13 chr1 7283391 7283782 + 2307602 14 chr1 7499578 7504553 + 1184403 15 chr1 7499578 7504553 + 2086831 16 chr1 8688955 8692928 - 88945 17 chr1 8688955 8692928 - 1184403 18 chr1 8781872 8789639 + 88945 19 chr1 8781872 8789639 + 801745 20 chr1 9591383 9598964 - 801745 21 chr1 9591383 9598964 - 2086831 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=22, step=1) Expected index RangeIndex(start=0, stop=22, step=1) index equal [ True True True True True True True True True True True True True True True True True True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpog866s3f/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpog866s3f/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 2547930 2548670 - 1986752 1 chr1 2547930 2548670 - 2326040 2 chr1 2547930 2549135 + 1683254 3 chr1 2547930 2549135 + 2726294 4 chr1 2547930 2549135 - 1986287 5 chr1 2547930 2549135 - 2325575 6 chr1 8942634 8943839 + 3000509 7 chr1 8942634 8943839 + 3661699 8 chr11 2547930 2549135 + 1749493 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 2547930 | 2549135 | a | 0 | ... | | chr1 | 2547930 | 2549135 | a | 0 | ... | | chr1 | 8942634 | 8943839 | a | 0 | ... | | chr1 | 8942634 | 8943839 | a | 0 | ... | | ... | ... | ... | ... | ... | ... | | chr1 | 2547930 | 2549135 | a | 0 | ... | | chr1 | 2547930 | 2549135 | a | 0 | ... | | chr1 | 2547930 | 2548670 | a | 0 | ... | | chr1 | 2547930 | 2548670 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 9 rows and 12 columns from 2 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 6 chr1 2547930 2548670 - 1986752 7 chr1 2547930 2548670 - 2326040 0 chr1 2547930 2549135 + 1683254 8 chr11 2547930 2549135 + 1749493 4 chr1 2547930 2549135 - 1986287 5 chr1 2547930 2549135 - 2325575 1 chr1 2547930 2549135 + 2726294 2 chr1 8942634 8943839 + 3000509 3 chr1 8942634 8943839 + 3661699 df2 Chromosome Start End Strand Distance 0 chr1 2547930 2548670 - 1986752 1 chr1 2547930 2548670 - 2326040 2 chr1 2547930 2549135 + 1683254 8 chr11 2547930 2549135 + 1749493 4 chr1 2547930 2549135 - 1986287 5 chr1 2547930 2549135 - 2325575 3 chr1 2547930 2549135 + 2726294 6 chr1 8942634 8943839 + 3000509 7 chr1 8942634 8943839 + 3661699 Actual Chromosome Start End Strand Distance 0 chr1 2547930 2548670 - 1986752 1 chr1 2547930 2548670 - 2326040 2 chr1 2547930 2549135 + 1683254 3 chr1 2547930 2549135 + 2726294 4 chr1 2547930 2549135 - 1986287 5 chr1 2547930 2549135 - 2325575 6 chr1 8942634 8943839 + 3000509 7 chr1 8942634 8943839 + 3661699 8 chr11 2547930 2549135 + 1749493 Expected Chromosome Start End Strand Distance 0 chr1 2547930 2548670 - 1986752 1 chr1 2547930 2548670 - 2326040 2 chr1 2547930 2549135 + 1683254 3 chr1 2547930 2549135 + 2726294 4 chr1 2547930 2549135 - 1986287 5 chr1 2547930 2549135 - 2325575 6 chr1 8942634 8943839 + 3000509 7 chr1 8942634 8943839 + 3661699 8 chr11 2547930 2549135 + 1749493 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=9, step=1) Expected index RangeIndex(start=0, stop=9, step=1) index equal [ True True True True True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp2uw06nhn/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp2uw06nhn/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpg7hnodpf/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpg7hnodpf/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpwi5y3izt/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpwi5y3izt/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 6 chr2 5 10 + 4 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr2 | 5 | 10 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr2 5 10 + 4 df2 Chromosome Start End Strand Distance 6 chr2 5 10 + 4 Actual Chromosome Start End Strand Distance 0 chr2 5 10 + 4 Expected Chromosome Start End Strand Distance 0 chr2 5 10 + 4 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=1, step=1) Expected index RangeIndex(start=0, stop=1, step=1) index equal [ True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp1omgmwc1/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp1omgmwc1/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 5 chr2 5 10 - 4 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr2 | 5 | 10 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr2 5 10 - 4 df2 Chromosome Start End Strand Distance 5 chr2 5 10 - 4 Actual Chromosome Start End Strand Distance 0 chr2 5 10 - 4 Expected Chromosome Start End Strand Distance 0 chr2 5 10 - 4 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=1, step=1) Expected index RangeIndex(start=0, stop=1, step=1) index equal [ True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp2b3mc1wp/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp2b3mc1wp/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpa7wq86d5/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpa7wq86d5/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpy4wckbbd/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpy4wckbbd/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 882753 892753 + 3389498 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 882753 | 892753 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 882753 892753 + 3389498 df2 Chromosome Start End Strand Distance 0 chr1 882753 892753 + 3389498 Actual Chromosome Start End Strand Distance 0 chr1 882753 892753 + 3389498 Expected Chromosome Start End Strand Distance 0 chr1 882753 892753 + 3389498 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=1, step=1) Expected index RangeIndex(start=0, stop=1, step=1) index equal [ True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpsfyyywyc/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpsfyyywyc/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpof6724sq/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpof6724sq/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 21 22 + 20 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 21 | 22 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 21 22 + 20 df2 Chromosome Start End Strand Distance 0 chr1 21 22 + 20 Actual Chromosome Start End Strand Distance 0 chr1 21 22 + 20 Expected Chromosome Start End Strand Distance 0 chr1 21 22 + 20 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=1, step=1) Expected index RangeIndex(start=0, stop=1, step=1) index equal [ True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpjw01ci9w/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpjw01ci9w/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 21 22 + 20 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 21 | 22 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 21 22 + 20 df2 Chromosome Start End Strand Distance 0 chr1 21 22 + 20 Actual Chromosome Start End Strand Distance 0 chr1 21 22 + 20 Expected Chromosome Start End Strand Distance 0 chr1 21 22 + 20 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=1, step=1) Expected index RangeIndex(start=0, stop=1, step=1) index equal [ True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmperkclhil/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmperkclhil/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 21 22 + 20 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 21 | 22 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 21 22 + 20 df2 Chromosome Start End Strand Distance 0 chr1 21 22 + 20 Actual Chromosome Start End Strand Distance 0 chr1 21 22 + 20 Expected Chromosome Start End Strand Distance 0 chr1 21 22 + 20 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=1, step=1) Expected index RangeIndex(start=0, stop=1, step=1) index equal [ True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp_b6j_633/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp_b6j_633/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 21 22 + 20 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 21 | 22 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 21 22 + 20 df2 Chromosome Start End Strand Distance 0 chr1 21 22 + 20 Actual Chromosome Start End Strand Distance 0 chr1 21 22 + 20 Expected Chromosome Start End Strand Distance 0 chr1 21 22 + 20 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=1, step=1) Expected index RangeIndex(start=0, stop=1, step=1) index equal [ True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpovwkeihn/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpovwkeihn/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpe50eo1b2/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpe50eo1b2/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 6430994 6435468 - 984327 1 chr1 6430994 6435468 - 1938718 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 6430994 | 6435468 | a | 0 | ... | | chr1 | 6430994 | 6435468 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 6430994 6435468 - 984327 1 chr1 6430994 6435468 - 1938718 df2 Chromosome Start End Strand Distance 0 chr1 6430994 6435468 - 984327 1 chr1 6430994 6435468 - 1938718 Actual Chromosome Start End Strand Distance 0 chr1 6430994 6435468 - 984327 1 chr1 6430994 6435468 - 1938718 Expected Chromosome Start End Strand Distance 0 chr1 6430994 6435468 - 984327 1 chr1 6430994 6435468 - 1938718 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=2, step=1) Expected index RangeIndex(start=0, stop=2, step=1) index equal [ True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpzjkh91i7/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpzjkh91i7/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 6430994 6435468 - 984327 1 chr1 6430994 6435468 - 1938718 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 6430994 | 6435468 | a | 0 | ... | | chr1 | 6430994 | 6435468 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 6430994 6435468 - 984327 1 chr1 6430994 6435468 - 1938718 df2 Chromosome Start End Strand Distance 0 chr1 6430994 6435468 - 984327 1 chr1 6430994 6435468 - 1938718 Actual Chromosome Start End Strand Distance 0 chr1 6430994 6435468 - 984327 1 chr1 6430994 6435468 - 1938718 Expected Chromosome Start End Strand Distance 0 chr1 6430994 6435468 - 984327 1 chr1 6430994 6435468 - 1938718 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=2, step=1) Expected index RangeIndex(start=0, stop=2, step=1) index equal [ True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmptp0shb50/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmptp0shb50/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 6430994 6435468 - 984327 1 chr1 6430994 6435468 - 1938718 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 6430994 | 6435468 | a | 0 | ... | | chr1 | 6430994 | 6435468 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 6430994 6435468 - 984327 1 chr1 6430994 6435468 - 1938718 df2 Chromosome Start End Strand Distance 0 chr1 6430994 6435468 - 984327 1 chr1 6430994 6435468 - 1938718 Actual Chromosome Start End Strand Distance 0 chr1 6430994 6435468 - 984327 1 chr1 6430994 6435468 - 1938718 Expected Chromosome Start End Strand Distance 0 chr1 6430994 6435468 - 984327 1 chr1 6430994 6435468 - 1938718 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=2, step=1) Expected index RangeIndex(start=0, stop=2, step=1) index equal [ True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp7h2m5ieo/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp7h2m5ieo/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp5itsphzp/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp5itsphzp/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 1 chr1 8 9 + 7 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 8 | 9 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 8 9 + 7 df2 Chromosome Start End Strand Distance 1 chr1 8 9 + 7 Actual Chromosome Start End Strand Distance 0 chr1 8 9 + 7 Expected Chromosome Start End Strand Distance 0 chr1 8 9 + 7 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=1, step=1) Expected index RangeIndex(start=0, stop=1, step=1) index equal [ True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpjylp239q/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpjylp239q/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmppeebvaoy/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmppeebvaoy/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmput4m1nf9/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmput4m1nf9/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 1 7417 - 2683602 1 chr1 1 7417 - 3328502 2 chr1 2 4787 + 2236361 3 chr1 4326966 4330831 + 2077218 4 chr1 5489432 5494152 - 2152827 5 chr1 5489432 5494152 - 2794438 6 chr1 7850294 7852099 - 4513689 7 chr1 7850294 7852099 - 5155300 8 chr1 10000000 10005885 - 6663395 9 chr1 10000000 10005885 - 7305006 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 2 | 4787 | a | 0 | ... | | chr1 | 4326966 | 4330831 | a | 0 | ... | | chr1 | 1 | 7417 | a | 0 | ... | | chr1 | 1 | 7417 | a | 0 | ... | | ... | ... | ... | ... | ... | ... | | chr1 | 7850294 | 7852099 | a | 0 | ... | | chr1 | 7850294 | 7852099 | a | 0 | ... | | chr1 | 10000000 | 10005885 | a | 0 | ... | | chr1 | 10000000 | 10005885 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 10 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 2 chr1 1 7417 - 2683602 3 chr1 1 7417 - 3328502 0 chr1 2 4787 + 2236361 1 chr1 4326966 4330831 + 2077218 4 chr1 5489432 5494152 - 2152827 5 chr1 5489432 5494152 - 2794438 6 chr1 7850294 7852099 - 4513689 7 chr1 7850294 7852099 - 5155300 8 chr1 10000000 10005885 - 6663395 9 chr1 10000000 10005885 - 7305006 df2 Chromosome Start End Strand Distance 0 chr1 1 7417 - 2683602 1 chr1 1 7417 - 3328502 2 chr1 2 4787 + 2236361 3 chr1 4326966 4330831 + 2077218 4 chr1 5489432 5494152 - 2152827 5 chr1 5489432 5494152 - 2794438 6 chr1 7850294 7852099 - 4513689 7 chr1 7850294 7852099 - 5155300 8 chr1 10000000 10005885 - 6663395 9 chr1 10000000 10005885 - 7305006 Actual Chromosome Start End Strand Distance 0 chr1 1 7417 - 2683602 1 chr1 1 7417 - 3328502 2 chr1 2 4787 + 2236361 3 chr1 4326966 4330831 + 2077218 4 chr1 5489432 5494152 - 2152827 5 chr1 5489432 5494152 - 2794438 6 chr1 7850294 7852099 - 4513689 7 chr1 7850294 7852099 - 5155300 8 chr1 10000000 10005885 - 6663395 9 chr1 10000000 10005885 - 7305006 Expected Chromosome Start End Strand Distance 0 chr1 1 7417 - 2683602 1 chr1 1 7417 - 3328502 2 chr1 2 4787 + 2236361 3 chr1 4326966 4330831 + 2077218 4 chr1 5489432 5494152 - 2152827 5 chr1 5489432 5494152 - 2794438 6 chr1 7850294 7852099 - 4513689 7 chr1 7850294 7852099 - 5155300 8 chr1 10000000 10005885 - 6663395 9 chr1 10000000 10005885 - 7305006 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=10, step=1) Expected index RangeIndex(start=0, stop=10, step=1) index equal [ True True True True True True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpfiberew3/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpfiberew3/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 1 7417 - 2233731 1 chr1 1 7417 - 3328502 2 chr1 2 4787 + 2686232 3 chr1 4326966 4330831 + 1635948 4 chr1 5489432 5494152 - 2153514 5 chr1 5489432 5494152 - 3248285 6 chr1 7850294 7852099 - 4514376 7 chr1 7850294 7852099 - 5609147 8 chr1 10000000 10005885 - 6664082 9 chr1 10000000 10005885 - 7758853 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 2 | 4787 | a | 0 | ... | | chr1 | 4326966 | 4330831 | a | 0 | ... | | chr1 | 1 | 7417 | a | 0 | ... | | chr1 | 1 | 7417 | a | 0 | ... | | ... | ... | ... | ... | ... | ... | | chr1 | 7850294 | 7852099 | a | 0 | ... | | chr1 | 7850294 | 7852099 | a | 0 | ... | | chr1 | 10000000 | 10005885 | a | 0 | ... | | chr1 | 10000000 | 10005885 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 10 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 2 chr1 1 7417 - 2233731 3 chr1 1 7417 - 3328502 0 chr1 2 4787 + 2686232 1 chr1 4326966 4330831 + 1635948 4 chr1 5489432 5494152 - 2153514 5 chr1 5489432 5494152 - 3248285 6 chr1 7850294 7852099 - 4514376 7 chr1 7850294 7852099 - 5609147 8 chr1 10000000 10005885 - 6664082 9 chr1 10000000 10005885 - 7758853 df2 Chromosome Start End Strand Distance 0 chr1 1 7417 - 2233731 1 chr1 1 7417 - 3328502 2 chr1 2 4787 + 2686232 3 chr1 4326966 4330831 + 1635948 4 chr1 5489432 5494152 - 2153514 5 chr1 5489432 5494152 - 3248285 6 chr1 7850294 7852099 - 4514376 7 chr1 7850294 7852099 - 5609147 8 chr1 10000000 10005885 - 6664082 9 chr1 10000000 10005885 - 7758853 Actual Chromosome Start End Strand Distance 0 chr1 1 7417 - 2233731 1 chr1 1 7417 - 3328502 2 chr1 2 4787 + 2686232 3 chr1 4326966 4330831 + 1635948 4 chr1 5489432 5494152 - 2153514 5 chr1 5489432 5494152 - 3248285 6 chr1 7850294 7852099 - 4514376 7 chr1 7850294 7852099 - 5609147 8 chr1 10000000 10005885 - 6664082 9 chr1 10000000 10005885 - 7758853 Expected Chromosome Start End Strand Distance 0 chr1 1 7417 - 2233731 1 chr1 1 7417 - 3328502 2 chr1 2 4787 + 2686232 3 chr1 4326966 4330831 + 1635948 4 chr1 5489432 5494152 - 2153514 5 chr1 5489432 5494152 - 3248285 6 chr1 7850294 7852099 - 4514376 7 chr1 7850294 7852099 - 5609147 8 chr1 10000000 10005885 - 6664082 9 chr1 10000000 10005885 - 7758853 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=10, step=1) Expected index RangeIndex(start=0, stop=10, step=1) index equal [ True True True True True True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmphxt93qob/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmphxt93qob/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 1 chr1 2 4787 + 1 2 chr1 2 4787 + 2686232 3 chr1 4326966 4330831 + 1635948 4 chr1 4326966 4330831 + 4326965 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 2 | 4787 | a | 0 | ... | | chr1 | 2 | 4787 | a | 0 | ... | | chr1 | 4326966 | 4330831 | a | 0 | ... | | chr1 | 4326966 | 4330831 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 4 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 2 4787 + 1 1 chr1 2 4787 + 2686232 2 chr1 4326966 4330831 + 1635948 3 chr1 4326966 4330831 + 4326965 df2 Chromosome Start End Strand Distance 1 chr1 2 4787 + 1 2 chr1 2 4787 + 2686232 3 chr1 4326966 4330831 + 1635948 4 chr1 4326966 4330831 + 4326965 Actual Chromosome Start End Strand Distance 0 chr1 2 4787 + 1 1 chr1 2 4787 + 2686232 2 chr1 4326966 4330831 + 1635948 3 chr1 4326966 4330831 + 4326965 Expected Chromosome Start End Strand Distance 0 chr1 2 4787 + 1 1 chr1 2 4787 + 2686232 2 chr1 4326966 4330831 + 1635948 3 chr1 4326966 4330831 + 4326965 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=4, step=1) Expected index RangeIndex(start=0, stop=4, step=1) index equal [ True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpqts7dzpd/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpqts7dzpd/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 1 chr1 2 4787 + 1 2 chr1 2 4787 + 2686232 3 chr1 4326966 4330831 + 1635948 4 chr1 4326966 4330831 + 4326965 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 2 | 4787 | a | 0 | ... | | chr1 | 2 | 4787 | a | 0 | ... | | chr1 | 4326966 | 4330831 | a | 0 | ... | | chr1 | 4326966 | 4330831 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 4 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 2 4787 + 1 1 chr1 2 4787 + 2686232 2 chr1 4326966 4330831 + 1635948 3 chr1 4326966 4330831 + 4326965 df2 Chromosome Start End Strand Distance 1 chr1 2 4787 + 1 2 chr1 2 4787 + 2686232 3 chr1 4326966 4330831 + 1635948 4 chr1 4326966 4330831 + 4326965 Actual Chromosome Start End Strand Distance 0 chr1 2 4787 + 1 1 chr1 2 4787 + 2686232 2 chr1 4326966 4330831 + 1635948 3 chr1 4326966 4330831 + 4326965 Expected Chromosome Start End Strand Distance 0 chr1 2 4787 + 1 1 chr1 2 4787 + 2686232 2 chr1 4326966 4330831 + 1635948 3 chr1 4326966 4330831 + 4326965 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=4, step=1) Expected index RangeIndex(start=0, stop=4, step=1) index equal [ True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp1_a4ggdp/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp1_a4ggdp/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 1 chr1 2 4787 + 1 2 chr1 2 4787 + 2686232 3 chr1 4326966 4330831 + 1635948 4 chr1 4326966 4330831 + 4326965 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 2 | 4787 | a | 0 | ... | | chr1 | 2 | 4787 | a | 0 | ... | | chr1 | 4326966 | 4330831 | a | 0 | ... | | chr1 | 4326966 | 4330831 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 4 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 2 4787 + 1 1 chr1 2 4787 + 2686232 2 chr1 4326966 4330831 + 1635948 3 chr1 4326966 4330831 + 4326965 df2 Chromosome Start End Strand Distance 1 chr1 2 4787 + 1 2 chr1 2 4787 + 2686232 3 chr1 4326966 4330831 + 1635948 4 chr1 4326966 4330831 + 4326965 Actual Chromosome Start End Strand Distance 0 chr1 2 4787 + 1 1 chr1 2 4787 + 2686232 2 chr1 4326966 4330831 + 1635948 3 chr1 4326966 4330831 + 4326965 Expected Chromosome Start End Strand Distance 0 chr1 2 4787 + 1 1 chr1 2 4787 + 2686232 2 chr1 4326966 4330831 + 1635948 3 chr1 4326966 4330831 + 4326965 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=4, step=1) Expected index RangeIndex(start=0, stop=4, step=1) index equal [ True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmptgqgtv0e/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmptgqgtv0e/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 1 chr1 2 4787 + 1 2 chr1 2 4787 + 2686232 3 chr1 4326966 4330831 + 1635948 4 chr1 4326966 4330831 + 4326965 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 2 | 4787 | a | 0 | ... | | chr1 | 2 | 4787 | a | 0 | ... | | chr1 | 4326966 | 4330831 | a | 0 | ... | | chr1 | 4326966 | 4330831 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 4 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 2 4787 + 1 1 chr1 2 4787 + 2686232 2 chr1 4326966 4330831 + 1635948 3 chr1 4326966 4330831 + 4326965 df2 Chromosome Start End Strand Distance 1 chr1 2 4787 + 1 2 chr1 2 4787 + 2686232 3 chr1 4326966 4330831 + 1635948 4 chr1 4326966 4330831 + 4326965 Actual Chromosome Start End Strand Distance 0 chr1 2 4787 + 1 1 chr1 2 4787 + 2686232 2 chr1 4326966 4330831 + 1635948 3 chr1 4326966 4330831 + 4326965 Expected Chromosome Start End Strand Distance 0 chr1 2 4787 + 1 1 chr1 2 4787 + 2686232 2 chr1 4326966 4330831 + 1635948 3 chr1 4326966 4330831 + 4326965 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=4, step=1) Expected index RangeIndex(start=0, stop=4, step=1) index equal [ True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmppivttpii/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmppivttpii/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 2 chr1 4326966 4330831 + 4324661 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 4326966 | 4330831 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 4326966 4330831 + 4324661 df2 Chromosome Start End Strand Distance 2 chr1 4326966 4330831 + 4324661 Actual Chromosome Start End Strand Distance 0 chr1 4326966 4330831 + 4324661 Expected Chromosome Start End Strand Distance 0 chr1 4326966 4330831 + 4324661 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=1, step=1) Expected index RangeIndex(start=0, stop=1, step=1) index equal [ True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpwnbtaacr/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpwnbtaacr/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 9999999 10002637 + 2614751 1 chr1 9999999 10002637 + 4643552 2 chr1 10000000 10004657 - 8870225 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 9999999 | 10002637 | a | 0 | ... | | chr1 | 9999999 | 10002637 | a | 0 | ... | | chr1 | 10000000 | 10004657 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 3 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 9999999 10002637 + 2614751 1 chr1 9999999 10002637 + 4643552 2 chr1 10000000 10004657 - 8870225 df2 Chromosome Start End Strand Distance 0 chr1 9999999 10002637 + 2614751 1 chr1 9999999 10002637 + 4643552 2 chr1 10000000 10004657 - 8870225 Actual Chromosome Start End Strand Distance 0 chr1 9999999 10002637 + 2614751 1 chr1 9999999 10002637 + 4643552 2 chr1 10000000 10004657 - 8870225 Expected Chromosome Start End Strand Distance 0 chr1 9999999 10002637 + 2614751 1 chr1 9999999 10002637 + 4643552 2 chr1 10000000 10004657 - 8870225 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=3, step=1) Expected index RangeIndex(start=0, stop=3, step=1) index equal [ True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpnoq9pi_j/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpnoq9pi_j/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 9999999 10002637 + 2614751 1 chr1 9999999 10002637 + 4643552 2 chr1 10000000 10004657 - 8870225 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 9999999 | 10002637 | a | 0 | ... | | chr1 | 9999999 | 10002637 | a | 0 | ... | | chr1 | 10000000 | 10004657 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 3 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 9999999 10002637 + 2614751 1 chr1 9999999 10002637 + 4643552 2 chr1 10000000 10004657 - 8870225 df2 Chromosome Start End Strand Distance 0 chr1 9999999 10002637 + 2614751 1 chr1 9999999 10002637 + 4643552 2 chr1 10000000 10004657 - 8870225 Actual Chromosome Start End Strand Distance 0 chr1 9999999 10002637 + 2614751 1 chr1 9999999 10002637 + 4643552 2 chr1 10000000 10004657 - 8870225 Expected Chromosome Start End Strand Distance 0 chr1 9999999 10002637 + 2614751 1 chr1 9999999 10002637 + 4643552 2 chr1 10000000 10004657 - 8870225 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=3, step=1) Expected index RangeIndex(start=0, stop=3, step=1) index equal [ True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpgawldt5r/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpgawldt5r/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 9999999 10002637 + 2614751 1 chr1 9999999 10002637 + 4641305 2 chr1 10000000 10004657 - 8870225 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 9999999 | 10002637 | a | 0 | ... | | chr1 | 9999999 | 10002637 | a | 0 | ... | | chr1 | 10000000 | 10004657 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 3 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 9999999 10002637 + 2614751 1 chr1 9999999 10002637 + 4641305 2 chr1 10000000 10004657 - 8870225 df2 Chromosome Start End Strand Distance 0 chr1 9999999 10002637 + 2614751 1 chr1 9999999 10002637 + 4641305 2 chr1 10000000 10004657 - 8870225 Actual Chromosome Start End Strand Distance 0 chr1 9999999 10002637 + 2614751 1 chr1 9999999 10002637 + 4641305 2 chr1 10000000 10004657 - 8870225 Expected Chromosome Start End Strand Distance 0 chr1 9999999 10002637 + 2614751 1 chr1 9999999 10002637 + 4641305 2 chr1 10000000 10004657 - 8870225 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=3, step=1) Expected index RangeIndex(start=0, stop=3, step=1) index equal [ True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpuyr9b0tr/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpuyr9b0tr/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 9999999 10002637 + 2614751 1 chr1 9999999 10002637 + 4641305 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 9999999 | 10002637 | a | 0 | ... | | chr1 | 9999999 | 10002637 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 9999999 10002637 + 2614751 1 chr1 9999999 10002637 + 4641305 df2 Chromosome Start End Strand Distance 0 chr1 9999999 10002637 + 2614751 1 chr1 9999999 10002637 + 4641305 Actual Chromosome Start End Strand Distance 0 chr1 9999999 10002637 + 2614751 1 chr1 9999999 10002637 + 4641305 Expected Chromosome Start End Strand Distance 0 chr1 9999999 10002637 + 2614751 1 chr1 9999999 10002637 + 4641305 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=2, step=1) Expected index RangeIndex(start=0, stop=2, step=1) index equal [ True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmprlh2pryb/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmprlh2pryb/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpdi8lr6uz/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpdi8lr6uz/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmppdrhw3jt/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmppdrhw3jt/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpwrrecmbz/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpwrrecmbz/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpjb1pxwyn/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpjb1pxwyn/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 1 chr12 712870 717759 - 6149128 2 chr12 712870 717759 - 6983140 3 chr12 1915133 1920022 - 4946865 4 chr12 1915133 1920022 - 5780877 5 chr12 4445042 4449931 - 2416956 6 chr12 4445042 4449931 - 3250968 7 chr12 5931290 5936179 - 930708 8 chr12 5931290 5936179 - 1764720 9 chr12 6866886 6871775 + 930708 10 chr12 6866886 6871775 + 2210242 11 chr12 7700898 7705787 + 1376230 12 chr12 7700898 7705787 + 1764720 13 chr12 8053316 8058205 + 1023812 14 chr12 8053316 8058205 + 1470419 15 chr12 9082016 9086905 - 1023812 16 chr12 9082016 9086905 - 1376230 17 chr12 9528623 9533512 - 1470419 18 chr12 9528623 9533512 - 1822837 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr12 | 8053316 | 8058205 | a | 0 | ... | | chr12 | 8053316 | 8058205 | a | 0 | ... | | chr12 | 7700898 | 7705787 | a | 0 | ... | | chr12 | 7700898 | 7705787 | a | 0 | ... | | ... | ... | ... | ... | ... | ... | | chr12 | 1915133 | 1920022 | a | 0 | ... | | chr12 | 1915133 | 1920022 | a | 0 | ... | | chr12 | 9082016 | 9086905 | a | 0 | ... | | chr12 | 9082016 | 9086905 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 18 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 8 chr12 712870 717759 - 6149128 9 chr12 712870 717759 - 6983140 14 chr12 1915133 1920022 - 4946865 15 chr12 1915133 1920022 - 5780877 10 chr12 4445042 4449931 - 2416956 11 chr12 4445042 4449931 - 3250968 12 chr12 5931290 5936179 - 930708 13 chr12 5931290 5936179 - 1764720 4 chr12 6866886 6871775 + 930708 5 chr12 6866886 6871775 + 2210242 2 chr12 7700898 7705787 + 1376230 3 chr12 7700898 7705787 + 1764720 0 chr12 8053316 8058205 + 1023812 1 chr12 8053316 8058205 + 1470419 16 chr12 9082016 9086905 - 1023812 17 chr12 9082016 9086905 - 1376230 6 chr12 9528623 9533512 - 1470419 7 chr12 9528623 9533512 - 1822837 df2 Chromosome Start End Strand Distance 1 chr12 712870 717759 - 6149128 2 chr12 712870 717759 - 6983140 3 chr12 1915133 1920022 - 4946865 4 chr12 1915133 1920022 - 5780877 5 chr12 4445042 4449931 - 2416956 6 chr12 4445042 4449931 - 3250968 7 chr12 5931290 5936179 - 930708 8 chr12 5931290 5936179 - 1764720 9 chr12 6866886 6871775 + 930708 10 chr12 6866886 6871775 + 2210242 11 chr12 7700898 7705787 + 1376230 12 chr12 7700898 7705787 + 1764720 13 chr12 8053316 8058205 + 1023812 14 chr12 8053316 8058205 + 1470419 15 chr12 9082016 9086905 - 1023812 16 chr12 9082016 9086905 - 1376230 17 chr12 9528623 9533512 - 1470419 18 chr12 9528623 9533512 - 1822837 Actual Chromosome Start End Strand Distance 0 chr12 712870 717759 - 6149128 1 chr12 712870 717759 - 6983140 2 chr12 1915133 1920022 - 4946865 3 chr12 1915133 1920022 - 5780877 4 chr12 4445042 4449931 - 2416956 5 chr12 4445042 4449931 - 3250968 6 chr12 5931290 5936179 - 930708 7 chr12 5931290 5936179 - 1764720 8 chr12 6866886 6871775 + 930708 9 chr12 6866886 6871775 + 2210242 10 chr12 7700898 7705787 + 1376230 11 chr12 7700898 7705787 + 1764720 12 chr12 8053316 8058205 + 1023812 13 chr12 8053316 8058205 + 1470419 14 chr12 9082016 9086905 - 1023812 15 chr12 9082016 9086905 - 1376230 16 chr12 9528623 9533512 - 1470419 17 chr12 9528623 9533512 - 1822837 Expected Chromosome Start End Strand Distance 0 chr12 712870 717759 - 6149128 1 chr12 712870 717759 - 6983140 2 chr12 1915133 1920022 - 4946865 3 chr12 1915133 1920022 - 5780877 4 chr12 4445042 4449931 - 2416956 5 chr12 4445042 4449931 - 3250968 6 chr12 5931290 5936179 - 930708 7 chr12 5931290 5936179 - 1764720 8 chr12 6866886 6871775 + 930708 9 chr12 6866886 6871775 + 2210242 10 chr12 7700898 7705787 + 1376230 11 chr12 7700898 7705787 + 1764720 12 chr12 8053316 8058205 + 1023812 13 chr12 8053316 8058205 + 1470419 14 chr12 9082016 9086905 - 1023812 15 chr12 9082016 9086905 - 1376230 16 chr12 9528623 9533512 - 1470419 17 chr12 9528623 9533512 - 1822837 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=18, step=1) Expected index RangeIndex(start=0, stop=18, step=1) index equal [ True True True True True True True True True True True True True True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmprm5lxc9t/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmprm5lxc9t/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 7940750 7945639 + 7940749 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 7940750 | 7945639 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 7940750 7945639 + 7940749 df2 Chromosome Start End Strand Distance 0 chr1 7940750 7945639 + 7940749 Actual Chromosome Start End Strand Distance 0 chr1 7940750 7945639 + 7940749 Expected Chromosome Start End Strand Distance 0 chr1 7940750 7945639 + 7940749 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=1, step=1) Expected index RangeIndex(start=0, stop=1, step=1) index equal [ True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp1k8bqmy4/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp1k8bqmy4/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 7940750 7945639 + 7940749 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 7940750 | 7945639 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 7940750 7945639 + 7940749 df2 Chromosome Start End Strand Distance 0 chr1 7940750 7945639 + 7940749 Actual Chromosome Start End Strand Distance 0 chr1 7940750 7945639 + 7940749 Expected Chromosome Start End Strand Distance 0 chr1 7940750 7945639 + 7940749 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=1, step=1) Expected index RangeIndex(start=0, stop=1, step=1) index equal [ True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpz2hny7_i/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpz2hny7_i/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpiqzm6pw6/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpiqzm6pw6/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp5qhlrpep/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp5qhlrpep/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpq0o_pu5r/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpq0o_pu5r/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 1107288 1114252 - 1896705 1 chr1 1107288 1114252 - 7088999 2 chr1 5713280 5719084 + 1685008 3 chr1 5713280 5719084 + 2700366 4 chr1 6344001 6345761 - 1857490 5 chr1 6344001 6345761 - 3331087 6 chr1 6344001 6349792 + 1054300 7 chr1 6344001 6349792 + 3331087 8 chr1 6344001 6351844 + 1052248 9 chr1 6344001 6351844 + 3331087 10 chr1 6344001 6353192 - 1850059 11 chr1 6344001 6353192 - 3331087 12 chr1 7925755 7928038 + 519706 13 chr1 7925755 7928038 + 4912841 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 5713280 | 5719084 | a | 0 | ... | | chr1 | 5713280 | 5719084 | a | 0 | ... | | chr1 | 6344001 | 6349792 | a | 0 | ... | | chr1 | 6344001 | 6349792 | a | 0 | ... | | ... | ... | ... | ... | ... | ... | | chr1 | 1107288 | 1114252 | a | 0 | ... | | chr1 | 1107288 | 1114252 | a | 0 | ... | | chr1 | 6344001 | 6345761 | a | 0 | ... | | chr1 | 6344001 | 6345761 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 14 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 10 chr1 1107288 1114252 - 1896705 11 chr1 1107288 1114252 - 7088999 0 chr1 5713280 5719084 + 1685008 1 chr1 5713280 5719084 + 2700366 12 chr1 6344001 6345761 - 1857490 13 chr1 6344001 6345761 - 3331087 2 chr1 6344001 6349792 + 1054300 3 chr1 6344001 6349792 + 3331087 4 chr1 6344001 6351844 + 1052248 5 chr1 6344001 6351844 + 3331087 8 chr1 6344001 6353192 - 1850059 9 chr1 6344001 6353192 - 3331087 6 chr1 7925755 7928038 + 519706 7 chr1 7925755 7928038 + 4912841 df2 Chromosome Start End Strand Distance 0 chr1 1107288 1114252 - 1896705 1 chr1 1107288 1114252 - 7088999 2 chr1 5713280 5719084 + 1685008 3 chr1 5713280 5719084 + 2700366 4 chr1 6344001 6345761 - 1857490 5 chr1 6344001 6345761 - 3331087 6 chr1 6344001 6349792 + 1054300 7 chr1 6344001 6349792 + 3331087 8 chr1 6344001 6351844 + 1052248 9 chr1 6344001 6351844 + 3331087 10 chr1 6344001 6353192 - 1850059 11 chr1 6344001 6353192 - 3331087 12 chr1 7925755 7928038 + 519706 13 chr1 7925755 7928038 + 4912841 Actual Chromosome Start End Strand Distance 0 chr1 1107288 1114252 - 1896705 1 chr1 1107288 1114252 - 7088999 2 chr1 5713280 5719084 + 1685008 3 chr1 5713280 5719084 + 2700366 4 chr1 6344001 6345761 - 1857490 5 chr1 6344001 6345761 - 3331087 6 chr1 6344001 6349792 + 1054300 7 chr1 6344001 6349792 + 3331087 8 chr1 6344001 6351844 + 1052248 9 chr1 6344001 6351844 + 3331087 10 chr1 6344001 6353192 - 1850059 11 chr1 6344001 6353192 - 3331087 12 chr1 7925755 7928038 + 519706 13 chr1 7925755 7928038 + 4912841 Expected Chromosome Start End Strand Distance 0 chr1 1107288 1114252 - 1896705 1 chr1 1107288 1114252 - 7088999 2 chr1 5713280 5719084 + 1685008 3 chr1 5713280 5719084 + 2700366 4 chr1 6344001 6345761 - 1857490 5 chr1 6344001 6345761 - 3331087 6 chr1 6344001 6349792 + 1054300 7 chr1 6344001 6349792 + 3331087 8 chr1 6344001 6351844 + 1052248 9 chr1 6344001 6351844 + 3331087 10 chr1 6344001 6353192 - 1850059 11 chr1 6344001 6353192 - 3331087 12 chr1 7925755 7928038 + 519706 13 chr1 7925755 7928038 + 4912841 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=14, step=1) Expected index RangeIndex(start=0, stop=14, step=1) index equal [ True True True True True True True True True True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpql0ejo67/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpql0ejo67/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 1107288 1114252 - 1100993 1 chr1 1107288 1114252 - 1107287 2 chr1 5713280 5719084 + 5713271 3 chr1 6344001 6345761 - 6337706 4 chr1 6344001 6345761 - 6344000 5 chr1 6344001 6349792 + 6343992 6 chr1 6344001 6351844 + 6343992 7 chr1 6344001 6353192 - 6337706 8 chr1 6344001 6353192 - 6344000 9 chr1 7925755 7928038 + 7925746 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 5713280 | 5719084 | a | 0 | ... | | chr1 | 6344001 | 6349792 | a | 0 | ... | | chr1 | 6344001 | 6351844 | a | 0 | ... | | chr1 | 7925755 | 7928038 | a | 0 | ... | | ... | ... | ... | ... | ... | ... | | chr1 | 1107288 | 1114252 | a | 0 | ... | | chr1 | 1107288 | 1114252 | a | 0 | ... | | chr1 | 6344001 | 6345761 | a | 0 | ... | | chr1 | 6344001 | 6345761 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 10 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 6 chr1 1107288 1114252 - 1100993 7 chr1 1107288 1114252 - 1107287 0 chr1 5713280 5719084 + 5713271 8 chr1 6344001 6345761 - 6337706 9 chr1 6344001 6345761 - 6344000 1 chr1 6344001 6349792 + 6343992 2 chr1 6344001 6351844 + 6343992 4 chr1 6344001 6353192 - 6337706 5 chr1 6344001 6353192 - 6344000 3 chr1 7925755 7928038 + 7925746 df2 Chromosome Start End Strand Distance 0 chr1 1107288 1114252 - 1100993 1 chr1 1107288 1114252 - 1107287 2 chr1 5713280 5719084 + 5713271 3 chr1 6344001 6345761 - 6337706 4 chr1 6344001 6345761 - 6344000 5 chr1 6344001 6349792 + 6343992 6 chr1 6344001 6351844 + 6343992 7 chr1 6344001 6353192 - 6337706 8 chr1 6344001 6353192 - 6344000 9 chr1 7925755 7928038 + 7925746 Actual Chromosome Start End Strand Distance 0 chr1 1107288 1114252 - 1100993 1 chr1 1107288 1114252 - 1107287 2 chr1 5713280 5719084 + 5713271 3 chr1 6344001 6345761 - 6337706 4 chr1 6344001 6345761 - 6344000 5 chr1 6344001 6349792 + 6343992 6 chr1 6344001 6351844 + 6343992 7 chr1 6344001 6353192 - 6337706 8 chr1 6344001 6353192 - 6344000 9 chr1 7925755 7928038 + 7925746 Expected Chromosome Start End Strand Distance 0 chr1 1107288 1114252 - 1100993 1 chr1 1107288 1114252 - 1107287 2 chr1 5713280 5719084 + 5713271 3 chr1 6344001 6345761 - 6337706 4 chr1 6344001 6345761 - 6344000 5 chr1 6344001 6349792 + 6343992 6 chr1 6344001 6351844 + 6343992 7 chr1 6344001 6353192 - 6337706 8 chr1 6344001 6353192 - 6344000 9 chr1 7925755 7928038 + 7925746 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=10, step=1) Expected index RangeIndex(start=0, stop=10, step=1) index equal [ True True True True True True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpny5s3dy7/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpny5s3dy7/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 1 2 - 6 1 chr1 1 2 - 6 2 chr1 1 2 - 6 3 chr1 1 2 - 6 4 chr1 1107288 1107289 - 1107281 5 chr1 5713280 5713281 + 5713279 6 chr1 7925755 7925756 - 7925748 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 5713280 | 5713281 | a | 0 | ... | | chr1 | 1 | 2 | a | 0 | ... | | chr1 | 1 | 2 | a | 0 | ... | | chr1 | 1 | 2 | a | 0 | ... | | chr1 | 1107288 | 1107289 | a | 0 | ... | | chr1 | 7925755 | 7925756 | a | 0 | ... | | chr1 | 1 | 2 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 7 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 1 chr1 1 2 - 6 2 chr1 1 2 - 6 3 chr1 1 2 - 6 6 chr1 1 2 - 6 4 chr1 1107288 1107289 - 1107281 0 chr1 5713280 5713281 + 5713279 5 chr1 7925755 7925756 - 7925748 df2 Chromosome Start End Strand Distance 0 chr1 1 2 - 6 1 chr1 1 2 - 6 2 chr1 1 2 - 6 3 chr1 1 2 - 6 4 chr1 1107288 1107289 - 1107281 5 chr1 5713280 5713281 + 5713279 6 chr1 7925755 7925756 - 7925748 Actual Chromosome Start End Strand Distance 0 chr1 1 2 - 6 1 chr1 1 2 - 6 2 chr1 1 2 - 6 3 chr1 1 2 - 6 4 chr1 1107288 1107289 - 1107281 5 chr1 5713280 5713281 + 5713279 6 chr1 7925755 7925756 - 7925748 Expected Chromosome Start End Strand Distance 0 chr1 1 2 - 6 1 chr1 1 2 - 6 2 chr1 1 2 - 6 3 chr1 1 2 - 6 4 chr1 1107288 1107289 - 1107281 5 chr1 5713280 5713281 + 5713279 6 chr1 7925755 7925756 - 7925748 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=7, step=1) Expected index RangeIndex(start=0, stop=7, step=1) index equal [ True True True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp1f4kbh2g/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp1f4kbh2g/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 1 2 - 6 1 chr1 1 2 - 6 2 chr1 1 2 - 6 3 chr1 1 2 - 6 4 chr1 1107288 1107289 - 1107281 5 chr1 5713280 5713281 + 5713279 6 chr1 7925755 7925756 - 7925748 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 5713280 | 5713281 | a | 0 | ... | | chr1 | 1 | 2 | a | 0 | ... | | chr1 | 1 | 2 | a | 0 | ... | | chr1 | 1 | 2 | a | 0 | ... | | chr1 | 1107288 | 1107289 | a | 0 | ... | | chr1 | 7925755 | 7925756 | a | 0 | ... | | chr1 | 1 | 2 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 7 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 1 chr1 1 2 - 6 2 chr1 1 2 - 6 3 chr1 1 2 - 6 6 chr1 1 2 - 6 4 chr1 1107288 1107289 - 1107281 0 chr1 5713280 5713281 + 5713279 5 chr1 7925755 7925756 - 7925748 df2 Chromosome Start End Strand Distance 0 chr1 1 2 - 6 1 chr1 1 2 - 6 2 chr1 1 2 - 6 3 chr1 1 2 - 6 4 chr1 1107288 1107289 - 1107281 5 chr1 5713280 5713281 + 5713279 6 chr1 7925755 7925756 - 7925748 Actual Chromosome Start End Strand Distance 0 chr1 1 2 - 6 1 chr1 1 2 - 6 2 chr1 1 2 - 6 3 chr1 1 2 - 6 4 chr1 1107288 1107289 - 1107281 5 chr1 5713280 5713281 + 5713279 6 chr1 7925755 7925756 - 7925748 Expected Chromosome Start End Strand Distance 0 chr1 1 2 - 6 1 chr1 1 2 - 6 2 chr1 1 2 - 6 3 chr1 1 2 - 6 4 chr1 1107288 1107289 - 1107281 5 chr1 5713280 5713281 + 5713279 6 chr1 7925755 7925756 - 7925748 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=7, step=1) Expected index RangeIndex(start=0, stop=7, step=1) index equal [ True True True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpmz8spjex/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpmz8spjex/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 5 chr1 5713280 5713281 + 5713273 6 chr1 5713280 5713281 + 5713279 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 5713280 | 5713281 | a | 0 | ... | | chr1 | 5713280 | 5713281 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 5713280 5713281 + 5713273 1 chr1 5713280 5713281 + 5713279 df2 Chromosome Start End Strand Distance 5 chr1 5713280 5713281 + 5713273 6 chr1 5713280 5713281 + 5713279 Actual Chromosome Start End Strand Distance 0 chr1 5713280 5713281 + 5713273 1 chr1 5713280 5713281 + 5713279 Expected Chromosome Start End Strand Distance 0 chr1 5713280 5713281 + 5713273 1 chr1 5713280 5713281 + 5713279 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=2, step=1) Expected index RangeIndex(start=0, stop=2, step=1) index equal [ True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp3h08bkkz/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp3h08bkkz/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 5 chr1 5713280 5713281 + 5515825 6 chr1 5713280 5713281 + 5515831 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 5713280 | 5713281 | a | 0 | ... | | chr1 | 5713280 | 5713281 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 5713280 5713281 + 5515825 1 chr1 5713280 5713281 + 5515831 df2 Chromosome Start End Strand Distance 5 chr1 5713280 5713281 + 5515825 6 chr1 5713280 5713281 + 5515831 Actual Chromosome Start End Strand Distance 0 chr1 5713280 5713281 + 5515825 1 chr1 5713280 5713281 + 5515831 Expected Chromosome Start End Strand Distance 0 chr1 5713280 5713281 + 5515825 1 chr1 5713280 5713281 + 5515831 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=2, step=1) Expected index RangeIndex(start=0, stop=2, step=1) index equal [ True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmprd80aa9l/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmprd80aa9l/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpy8pv098e/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpy8pv098e/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 1429820 1434488 - 4777116 1 chr1 1429820 1434488 - 5392794 2 chr1 5032365 5040672 - 1170932 3 chr1 5032365 5040672 - 1786610 4 chr1 6096519 6102341 - 109263 5 chr1 6096519 6102341 - 724941 6 chr1 7905785 7910050 + 752003 7 chr1 7905785 7910050 + 6693863 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 7905785 | 7910050 | a | 0 | ... | | chr1 | 7905785 | 7910050 | a | 0 | ... | | chr1 | 6096519 | 6102341 | a | 0 | ... | | chr1 | 6096519 | 6102341 | a | 0 | ... | | chr1 | 1429820 | 1434488 | a | 0 | ... | | chr1 | 1429820 | 1434488 | a | 0 | ... | | chr1 | 5032365 | 5040672 | a | 0 | ... | | chr1 | 5032365 | 5040672 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 8 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 4 chr1 1429820 1434488 - 4777116 5 chr1 1429820 1434488 - 5392794 6 chr1 5032365 5040672 - 1170932 7 chr1 5032365 5040672 - 1786610 2 chr1 6096519 6102341 - 109263 3 chr1 6096519 6102341 - 724941 0 chr1 7905785 7910050 + 752003 1 chr1 7905785 7910050 + 6693863 df2 Chromosome Start End Strand Distance 0 chr1 1429820 1434488 - 4777116 1 chr1 1429820 1434488 - 5392794 2 chr1 5032365 5040672 - 1170932 3 chr1 5032365 5040672 - 1786610 4 chr1 6096519 6102341 - 109263 5 chr1 6096519 6102341 - 724941 6 chr1 7905785 7910050 + 752003 7 chr1 7905785 7910050 + 6693863 Actual Chromosome Start End Strand Distance 0 chr1 1429820 1434488 - 4777116 1 chr1 1429820 1434488 - 5392794 2 chr1 5032365 5040672 - 1170932 3 chr1 5032365 5040672 - 1786610 4 chr1 6096519 6102341 - 109263 5 chr1 6096519 6102341 - 724941 6 chr1 7905785 7910050 + 752003 7 chr1 7905785 7910050 + 6693863 Expected Chromosome Start End Strand Distance 0 chr1 1429820 1434488 - 4777116 1 chr1 1429820 1434488 - 5392794 2 chr1 5032365 5040672 - 1170932 3 chr1 5032365 5040672 - 1786610 4 chr1 6096519 6102341 - 109263 5 chr1 6096519 6102341 - 724941 6 chr1 7905785 7910050 + 752003 7 chr1 7905785 7910050 + 6693863 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=8, step=1) Expected index RangeIndex(start=0, stop=8, step=1) index equal [ True True True True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpl7f_t24v/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpl7f_t24v/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 4265 8530 + 1193904 1 chr1 4265 8530 + 7140476 2 chr1 4668 9336 - 6202268 3 chr1 4668 9336 - 6817946 4 chr1 5822 11644 - 6199960 5 chr1 5822 11644 - 6815638 6 chr1 8307 16614 - 6194990 7 chr1 8307 16614 - 6810668 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 4265 | 8530 | a | 0 | ... | | chr1 | 4265 | 8530 | a | 0 | ... | | chr1 | 5822 | 11644 | a | 0 | ... | | chr1 | 5822 | 11644 | a | 0 | ... | | chr1 | 4668 | 9336 | a | 0 | ... | | chr1 | 4668 | 9336 | a | 0 | ... | | chr1 | 8307 | 16614 | a | 0 | ... | | chr1 | 8307 | 16614 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 8 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 4265 8530 + 1193904 1 chr1 4265 8530 + 7140476 4 chr1 4668 9336 - 6202268 5 chr1 4668 9336 - 6817946 2 chr1 5822 11644 - 6199960 3 chr1 5822 11644 - 6815638 6 chr1 8307 16614 - 6194990 7 chr1 8307 16614 - 6810668 df2 Chromosome Start End Strand Distance 0 chr1 4265 8530 + 1193904 1 chr1 4265 8530 + 7140476 2 chr1 4668 9336 - 6202268 3 chr1 4668 9336 - 6817946 4 chr1 5822 11644 - 6199960 5 chr1 5822 11644 - 6815638 6 chr1 8307 16614 - 6194990 7 chr1 8307 16614 - 6810668 Actual Chromosome Start End Strand Distance 0 chr1 4265 8530 + 1193904 1 chr1 4265 8530 + 7140476 2 chr1 4668 9336 - 6202268 3 chr1 4668 9336 - 6817946 4 chr1 5822 11644 - 6199960 5 chr1 5822 11644 - 6815638 6 chr1 8307 16614 - 6194990 7 chr1 8307 16614 - 6810668 Expected Chromosome Start End Strand Distance 0 chr1 4265 8530 + 1193904 1 chr1 4265 8530 + 7140476 2 chr1 4668 9336 - 6202268 3 chr1 4668 9336 - 6817946 4 chr1 5822 11644 - 6199960 5 chr1 5822 11644 - 6815638 6 chr1 8307 16614 - 6194990 7 chr1 8307 16614 - 6810668 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=8, step=1) Expected index RangeIndex(start=0, stop=8, step=1) index equal [ True True True True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpq63_0f9i/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpq63_0f9i/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 4265 8530 + 1193904 1 chr1 4265 8530 + 7140476 2 chr1 4668 9336 - 6202268 3 chr1 4668 9336 - 6817946 4 chr1 5822 11644 - 6199960 5 chr1 5822 11644 - 6815638 6 chr1 8307 16614 - 6194990 7 chr1 8307 16614 - 6810668 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 4265 | 8530 | a | 0 | ... | | chr1 | 4265 | 8530 | a | 0 | ... | | chr1 | 5822 | 11644 | a | 0 | ... | | chr1 | 5822 | 11644 | a | 0 | ... | | chr1 | 4668 | 9336 | a | 0 | ... | | chr1 | 4668 | 9336 | a | 0 | ... | | chr1 | 8307 | 16614 | a | 0 | ... | | chr1 | 8307 | 16614 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 8 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 4265 8530 + 1193904 1 chr1 4265 8530 + 7140476 4 chr1 4668 9336 - 6202268 5 chr1 4668 9336 - 6817946 2 chr1 5822 11644 - 6199960 3 chr1 5822 11644 - 6815638 6 chr1 8307 16614 - 6194990 7 chr1 8307 16614 - 6810668 df2 Chromosome Start End Strand Distance 0 chr1 4265 8530 + 1193904 1 chr1 4265 8530 + 7140476 2 chr1 4668 9336 - 6202268 3 chr1 4668 9336 - 6817946 4 chr1 5822 11644 - 6199960 5 chr1 5822 11644 - 6815638 6 chr1 8307 16614 - 6194990 7 chr1 8307 16614 - 6810668 Actual Chromosome Start End Strand Distance 0 chr1 4265 8530 + 1193904 1 chr1 4265 8530 + 7140476 2 chr1 4668 9336 - 6202268 3 chr1 4668 9336 - 6817946 4 chr1 5822 11644 - 6199960 5 chr1 5822 11644 - 6815638 6 chr1 8307 16614 - 6194990 7 chr1 8307 16614 - 6810668 Expected Chromosome Start End Strand Distance 0 chr1 4265 8530 + 1193904 1 chr1 4265 8530 + 7140476 2 chr1 4668 9336 - 6202268 3 chr1 4668 9336 - 6817946 4 chr1 5822 11644 - 6199960 5 chr1 5822 11644 - 6815638 6 chr1 8307 16614 - 6194990 7 chr1 8307 16614 - 6810668 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=8, step=1) Expected index RangeIndex(start=0, stop=8, step=1) index equal [ True True True True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpk0bkz1p2/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpk0bkz1p2/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 4265 8530 - 6203074 1 chr1 4265 8530 - 6818752 2 chr1 4668 9336 - 6202268 3 chr1 4668 9336 - 6817946 4 chr1 5822 11644 - 6199960 5 chr1 5822 11644 - 6815638 6 chr1 8307 16614 + 1185820 7 chr1 8307 16614 + 7132392 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 8307 | 16614 | a | 0 | ... | | chr1 | 8307 | 16614 | a | 0 | ... | | chr1 | 4265 | 8530 | a | 0 | ... | | chr1 | 4265 | 8530 | a | 0 | ... | | chr1 | 5822 | 11644 | a | 0 | ... | | chr1 | 5822 | 11644 | a | 0 | ... | | chr1 | 4668 | 9336 | a | 0 | ... | | chr1 | 4668 | 9336 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 8 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 2 chr1 4265 8530 - 6203074 3 chr1 4265 8530 - 6818752 6 chr1 4668 9336 - 6202268 7 chr1 4668 9336 - 6817946 4 chr1 5822 11644 - 6199960 5 chr1 5822 11644 - 6815638 0 chr1 8307 16614 + 1185820 1 chr1 8307 16614 + 7132392 df2 Chromosome Start End Strand Distance 0 chr1 4265 8530 - 6203074 1 chr1 4265 8530 - 6818752 2 chr1 4668 9336 - 6202268 3 chr1 4668 9336 - 6817946 4 chr1 5822 11644 - 6199960 5 chr1 5822 11644 - 6815638 6 chr1 8307 16614 + 1185820 7 chr1 8307 16614 + 7132392 Actual Chromosome Start End Strand Distance 0 chr1 4265 8530 - 6203074 1 chr1 4265 8530 - 6818752 2 chr1 4668 9336 - 6202268 3 chr1 4668 9336 - 6817946 4 chr1 5822 11644 - 6199960 5 chr1 5822 11644 - 6815638 6 chr1 8307 16614 + 1185820 7 chr1 8307 16614 + 7132392 Expected Chromosome Start End Strand Distance 0 chr1 4265 8530 - 6203074 1 chr1 4265 8530 - 6818752 2 chr1 4668 9336 - 6202268 3 chr1 4668 9336 - 6817946 4 chr1 5822 11644 - 6199960 5 chr1 5822 11644 - 6815638 6 chr1 8307 16614 + 1185820 7 chr1 8307 16614 + 7132392 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=8, step=1) Expected index RangeIndex(start=0, stop=8, step=1) index equal [ True True True True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp0rcvd0an/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp0rcvd0an/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 1202433 1211923 - 4999681 1 chr1 1202433 1211923 - 5615359 2 chr1 6211603 6216794 + 932212 3 chr1 6211603 6216794 + 4999681 4 chr1 6827281 6836771 + 312235 5 chr1 6827281 6836771 + 5615359 6 chr1 7149005 7153783 - 312235 7 chr1 7149005 7153783 - 932212 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 6211603 | 6216794 | a | 0 | ... | | chr1 | 6211603 | 6216794 | a | 0 | ... | | chr1 | 6827281 | 6836771 | a | 0 | ... | | chr1 | 6827281 | 6836771 | a | 0 | ... | | chr1 | 7149005 | 7153783 | a | 0 | ... | | chr1 | 7149005 | 7153783 | a | 0 | ... | | chr1 | 1202433 | 1211923 | a | 0 | ... | | chr1 | 1202433 | 1211923 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 8 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 6 chr1 1202433 1211923 - 4999681 7 chr1 1202433 1211923 - 5615359 0 chr1 6211603 6216794 + 932212 1 chr1 6211603 6216794 + 4999681 2 chr1 6827281 6836771 + 312235 3 chr1 6827281 6836771 + 5615359 4 chr1 7149005 7153783 - 312235 5 chr1 7149005 7153783 - 932212 df2 Chromosome Start End Strand Distance 0 chr1 1202433 1211923 - 4999681 1 chr1 1202433 1211923 - 5615359 2 chr1 6211603 6216794 + 932212 3 chr1 6211603 6216794 + 4999681 4 chr1 6827281 6836771 + 312235 5 chr1 6827281 6836771 + 5615359 6 chr1 7149005 7153783 - 312235 7 chr1 7149005 7153783 - 932212 Actual Chromosome Start End Strand Distance 0 chr1 1202433 1211923 - 4999681 1 chr1 1202433 1211923 - 5615359 2 chr1 6211603 6216794 + 932212 3 chr1 6211603 6216794 + 4999681 4 chr1 6827281 6836771 + 312235 5 chr1 6827281 6836771 + 5615359 6 chr1 7149005 7153783 - 312235 7 chr1 7149005 7153783 - 932212 Expected Chromosome Start End Strand Distance 0 chr1 1202433 1211923 - 4999681 1 chr1 1202433 1211923 - 5615359 2 chr1 6211603 6216794 + 932212 3 chr1 6211603 6216794 + 4999681 4 chr1 6827281 6836771 + 312235 5 chr1 6827281 6836771 + 5615359 6 chr1 7149005 7153783 - 312235 7 chr1 7149005 7153783 - 932212 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=8, step=1) Expected index RangeIndex(start=0, stop=8, step=1) index equal [ True True True True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmptvp9nx_k/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmptvp9nx_k/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 1202433 1211923 - 4999681 1 chr1 1202433 1211923 - 5615359 2 chr1 6211603 6216794 + 932212 3 chr1 6211603 6216794 + 5004473 4 chr1 6827281 6836771 + 312235 5 chr1 6827281 6836771 + 5620151 6 chr1 7149005 7153783 - 317628 7 chr1 7149005 7153783 - 929522 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 6211603 | 6216794 | a | 0 | ... | | chr1 | 6211603 | 6216794 | a | 0 | ... | | chr1 | 6827281 | 6836771 | a | 0 | ... | | chr1 | 6827281 | 6836771 | a | 0 | ... | | chr1 | 7149005 | 7153783 | a | 0 | ... | | chr1 | 7149005 | 7153783 | a | 0 | ... | | chr1 | 1202433 | 1211923 | a | 0 | ... | | chr1 | 1202433 | 1211923 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 8 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 6 chr1 1202433 1211923 - 4999681 7 chr1 1202433 1211923 - 5615359 0 chr1 6211603 6216794 + 932212 1 chr1 6211603 6216794 + 5004473 2 chr1 6827281 6836771 + 312235 3 chr1 6827281 6836771 + 5620151 4 chr1 7149005 7153783 - 317628 5 chr1 7149005 7153783 - 929522 df2 Chromosome Start End Strand Distance 0 chr1 1202433 1211923 - 4999681 1 chr1 1202433 1211923 - 5615359 2 chr1 6211603 6216794 + 932212 3 chr1 6211603 6216794 + 5004473 4 chr1 6827281 6836771 + 312235 5 chr1 6827281 6836771 + 5620151 6 chr1 7149005 7153783 - 317628 7 chr1 7149005 7153783 - 929522 Actual Chromosome Start End Strand Distance 0 chr1 1202433 1211923 - 4999681 1 chr1 1202433 1211923 - 5615359 2 chr1 6211603 6216794 + 932212 3 chr1 6211603 6216794 + 5004473 4 chr1 6827281 6836771 + 312235 5 chr1 6827281 6836771 + 5620151 6 chr1 7149005 7153783 - 317628 7 chr1 7149005 7153783 - 929522 Expected Chromosome Start End Strand Distance 0 chr1 1202433 1211923 - 4999681 1 chr1 1202433 1211923 - 5615359 2 chr1 6211603 6216794 + 932212 3 chr1 6211603 6216794 + 5004473 4 chr1 6827281 6836771 + 312235 5 chr1 6827281 6836771 + 5620151 6 chr1 7149005 7153783 - 317628 7 chr1 7149005 7153783 - 929522 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=8, step=1) Expected index RangeIndex(start=0, stop=8, step=1) index equal [ True True True True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpgxto7tsx/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpgxto7tsx/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 5191 13072 + 5190 1 chr1 5191 8264 + 5190 2 chr1 5191 9288 + 5190 3 chr1 5191 9889 + 5190 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 5191 | 13072 | a | 0 | ... | | chr1 | 5191 | 8264 | a | 0 | ... | | chr1 | 5191 | 9889 | a | 0 | ... | | chr1 | 5191 | 9288 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 4 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 1 chr1 5191 8264 + 5190 3 chr1 5191 9288 + 5190 2 chr1 5191 9889 + 5190 0 chr1 5191 13072 + 5190 df2 Chromosome Start End Strand Distance 1 chr1 5191 8264 + 5190 2 chr1 5191 9288 + 5190 3 chr1 5191 9889 + 5190 0 chr1 5191 13072 + 5190 Actual Chromosome Start End Strand Distance 0 chr1 5191 8264 + 5190 1 chr1 5191 9288 + 5190 2 chr1 5191 9889 + 5190 3 chr1 5191 13072 + 5190 Expected Chromosome Start End Strand Distance 0 chr1 5191 8264 + 5190 1 chr1 5191 9288 + 5190 2 chr1 5191 9889 + 5190 3 chr1 5191 13072 + 5190 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=4, step=1) Expected index RangeIndex(start=0, stop=4, step=1) index equal [ True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmppn7d0443/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmppn7d0443/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 3442294 3442937 + 1139378 1 chr1 3442294 3450753 - 3248715 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 3442294 | 3442937 | a | 0 | ... | | chr1 | 3442294 | 3450753 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 3442294 3442937 + 1139378 1 chr1 3442294 3450753 - 3248715 df2 Chromosome Start End Strand Distance 0 chr1 3442294 3442937 + 1139378 1 chr1 3442294 3450753 - 3248715 Actual Chromosome Start End Strand Distance 0 chr1 3442294 3442937 + 1139378 1 chr1 3442294 3450753 - 3248715 Expected Chromosome Start End Strand Distance 0 chr1 3442294 3442937 + 1139378 1 chr1 3442294 3450753 - 3248715 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=2, step=1) Expected index RangeIndex(start=0, stop=2, step=1) index equal [ True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp7lf_w6nw/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp7lf_w6nw/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 4582314 4592314 - 2107154 1 chr1 6699467 6702418 + 2107154 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 6699467 | 6702418 | a | 0 | ... | | chr1 | 4582314 | 4592314 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 1 chr1 4582314 4592314 - 2107154 0 chr1 6699467 6702418 + 2107154 df2 Chromosome Start End Strand Distance 0 chr1 4582314 4592314 - 2107154 1 chr1 6699467 6702418 + 2107154 Actual Chromosome Start End Strand Distance 0 chr1 4582314 4592314 - 2107154 1 chr1 6699467 6702418 + 2107154 Expected Chromosome Start End Strand Distance 0 chr1 4582314 4592314 - 2107154 1 chr1 6699467 6702418 + 2107154 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=2, step=1) Expected index RangeIndex(start=0, stop=2, step=1) index equal [ True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpo5_0925i/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpo5_0925i/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 4582314 4592314 - 2107154 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 4582314 | 4592314 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 4582314 4592314 - 2107154 df2 Chromosome Start End Strand Distance 0 chr1 4582314 4592314 - 2107154 Actual Chromosome Start End Strand Distance 0 chr1 4582314 4592314 - 2107154 Expected Chromosome Start End Strand Distance 0 chr1 4582314 4592314 - 2107154 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=1, step=1) Expected index RangeIndex(start=0, stop=1, step=1) index equal [ True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpozmjbigl/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpozmjbigl/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 4582314 4592314 - 2107154 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 4582314 | 4592314 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 4582314 4592314 - 2107154 df2 Chromosome Start End Strand Distance 0 chr1 4582314 4592314 - 2107154 Actual Chromosome Start End Strand Distance 0 chr1 4582314 4592314 - 2107154 Expected Chromosome Start End Strand Distance 0 chr1 4582314 4592314 - 2107154 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=1, step=1) Expected index RangeIndex(start=0, stop=1, step=1) index equal [ True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpq6qmpjow/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpq6qmpjow/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 4582314 4592314 - 2107154 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 4582314 | 4592314 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 4582314 4592314 - 2107154 df2 Chromosome Start End Strand Distance 0 chr1 4582314 4592314 - 2107154 Actual Chromosome Start End Strand Distance 0 chr1 4582314 4592314 - 2107154 Expected Chromosome Start End Strand Distance 0 chr1 4582314 4592314 - 2107154 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=1, step=1) Expected index RangeIndex(start=0, stop=1, step=1) index equal [ True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmplayh85vu/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmplayh85vu/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 1209884 1212192 - 3370123 1 chr1 1209884 1212192 - 5487276 2 chr1 4582314 4592314 - 2107154 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 1209884 | 1212192 | a | 0 | ... | | chr1 | 1209884 | 1212192 | a | 0 | ... | | chr1 | 4582314 | 4592314 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 3 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 1209884 1212192 - 3370123 1 chr1 1209884 1212192 - 5487276 2 chr1 4582314 4592314 - 2107154 df2 Chromosome Start End Strand Distance 0 chr1 1209884 1212192 - 3370123 1 chr1 1209884 1212192 - 5487276 2 chr1 4582314 4592314 - 2107154 Actual Chromosome Start End Strand Distance 0 chr1 1209884 1212192 - 3370123 1 chr1 1209884 1212192 - 5487276 2 chr1 4582314 4592314 - 2107154 Expected Chromosome Start End Strand Distance 0 chr1 1209884 1212192 - 3370123 1 chr1 1209884 1212192 - 5487276 2 chr1 4582314 4592314 - 2107154 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=3, step=1) Expected index RangeIndex(start=0, stop=3, step=1) index equal [ True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpv7k6w912/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpv7k6w912/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp46ghw4ms/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp46ghw4ms/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 3223021 3232408 + 358393 1 chr1 3223021 3232408 + 2471210 4 chr1 5734586 5738967 + 2143408 5 chr1 5734586 5738967 + 4982775 8 chr1 7335056 7342232 + 3743878 9 chr1 7335056 7342232 + 6583245 10 chr1 7853618 7862006 + 4262440 11 chr1 7853618 7862006 + 7101807 12 chr1 8913922 8922134 + 5322744 13 chr1 8913922 8922134 + 8162111 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 7853618 | 7862006 | a | 0 | ... | | chr1 | 7853618 | 7862006 | a | 0 | ... | | chr1 | 5734586 | 5738967 | a | 0 | ... | | chr1 | 5734586 | 5738967 | a | 0 | ... | | ... | ... | ... | ... | ... | ... | | chr1 | 8913922 | 8922134 | a | 0 | ... | | chr1 | 8913922 | 8922134 | a | 0 | ... | | chr1 | 7335056 | 7342232 | a | 0 | ... | | chr1 | 7335056 | 7342232 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 10 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 4 chr1 3223021 3232408 + 358393 5 chr1 3223021 3232408 + 2471210 2 chr1 5734586 5738967 + 2143408 3 chr1 5734586 5738967 + 4982775 8 chr1 7335056 7342232 + 3743878 9 chr1 7335056 7342232 + 6583245 0 chr1 7853618 7862006 + 4262440 1 chr1 7853618 7862006 + 7101807 6 chr1 8913922 8922134 + 5322744 7 chr1 8913922 8922134 + 8162111 df2 Chromosome Start End Strand Distance 0 chr1 3223021 3232408 + 358393 1 chr1 3223021 3232408 + 2471210 4 chr1 5734586 5738967 + 2143408 5 chr1 5734586 5738967 + 4982775 8 chr1 7335056 7342232 + 3743878 9 chr1 7335056 7342232 + 6583245 10 chr1 7853618 7862006 + 4262440 11 chr1 7853618 7862006 + 7101807 12 chr1 8913922 8922134 + 5322744 13 chr1 8913922 8922134 + 8162111 Actual Chromosome Start End Strand Distance 0 chr1 3223021 3232408 + 358393 1 chr1 3223021 3232408 + 2471210 2 chr1 5734586 5738967 + 2143408 3 chr1 5734586 5738967 + 4982775 4 chr1 7335056 7342232 + 3743878 5 chr1 7335056 7342232 + 6583245 6 chr1 7853618 7862006 + 4262440 7 chr1 7853618 7862006 + 7101807 8 chr1 8913922 8922134 + 5322744 9 chr1 8913922 8922134 + 8162111 Expected Chromosome Start End Strand Distance 0 chr1 3223021 3232408 + 358393 1 chr1 3223021 3232408 + 2471210 2 chr1 5734586 5738967 + 2143408 3 chr1 5734586 5738967 + 4982775 4 chr1 7335056 7342232 + 3743878 5 chr1 7335056 7342232 + 6583245 6 chr1 7853618 7862006 + 4262440 7 chr1 7853618 7862006 + 7101807 8 chr1 8913922 8922134 + 5322744 9 chr1 8913922 8922134 + 8162111 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=10, step=1) Expected index RangeIndex(start=0, stop=10, step=1) index equal [ True True True True True True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpwruzkkgc/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpwruzkkgc/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 3223021 3232408 + 358393 1 chr1 3223021 3232408 + 2471210 4 chr1 5734586 5738967 + 2143408 5 chr1 5734586 5738967 + 4982775 8 chr1 7335056 7342232 + 3743878 9 chr1 7335056 7342232 + 6583245 10 chr1 7853618 7862006 + 4262440 11 chr1 7853618 7862006 + 7101807 12 chr1 8913922 8922134 + 5322744 13 chr1 8913922 8922134 + 8162111 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 7853618 | 7862006 | a | 0 | ... | | chr1 | 7853618 | 7862006 | a | 0 | ... | | chr1 | 5734586 | 5738967 | a | 0 | ... | | chr1 | 5734586 | 5738967 | a | 0 | ... | | ... | ... | ... | ... | ... | ... | | chr1 | 8913922 | 8922134 | a | 0 | ... | | chr1 | 8913922 | 8922134 | a | 0 | ... | | chr1 | 7335056 | 7342232 | a | 0 | ... | | chr1 | 7335056 | 7342232 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 10 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 4 chr1 3223021 3232408 + 358393 5 chr1 3223021 3232408 + 2471210 2 chr1 5734586 5738967 + 2143408 3 chr1 5734586 5738967 + 4982775 8 chr1 7335056 7342232 + 3743878 9 chr1 7335056 7342232 + 6583245 0 chr1 7853618 7862006 + 4262440 1 chr1 7853618 7862006 + 7101807 6 chr1 8913922 8922134 + 5322744 7 chr1 8913922 8922134 + 8162111 df2 Chromosome Start End Strand Distance 0 chr1 3223021 3232408 + 358393 1 chr1 3223021 3232408 + 2471210 4 chr1 5734586 5738967 + 2143408 5 chr1 5734586 5738967 + 4982775 8 chr1 7335056 7342232 + 3743878 9 chr1 7335056 7342232 + 6583245 10 chr1 7853618 7862006 + 4262440 11 chr1 7853618 7862006 + 7101807 12 chr1 8913922 8922134 + 5322744 13 chr1 8913922 8922134 + 8162111 Actual Chromosome Start End Strand Distance 0 chr1 3223021 3232408 + 358393 1 chr1 3223021 3232408 + 2471210 2 chr1 5734586 5738967 + 2143408 3 chr1 5734586 5738967 + 4982775 4 chr1 7335056 7342232 + 3743878 5 chr1 7335056 7342232 + 6583245 6 chr1 7853618 7862006 + 4262440 7 chr1 7853618 7862006 + 7101807 8 chr1 8913922 8922134 + 5322744 9 chr1 8913922 8922134 + 8162111 Expected Chromosome Start End Strand Distance 0 chr1 3223021 3232408 + 358393 1 chr1 3223021 3232408 + 2471210 2 chr1 5734586 5738967 + 2143408 3 chr1 5734586 5738967 + 4982775 4 chr1 7335056 7342232 + 3743878 5 chr1 7335056 7342232 + 6583245 6 chr1 7853618 7862006 + 4262440 7 chr1 7853618 7862006 + 7101807 8 chr1 8913922 8922134 + 5322744 9 chr1 8913922 8922134 + 8162111 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=10, step=1) Expected index RangeIndex(start=0, stop=10, step=1) index equal [ True True True True True True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpak0ojpro/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpak0ojpro/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 3223021 3232408 + 358393 1 chr1 3223021 3232408 + 1675593 4 chr1 5734586 5738967 + 819859 5 chr1 5734586 5738967 + 2143408 8 chr1 7335056 7342232 + 2420329 9 chr1 7335056 7342232 + 3743878 10 chr1 7853618 7862006 + 2938891 11 chr1 7853618 7862006 + 4262440 12 chr1 8913922 8922134 + 3999195 13 chr1 8913922 8922134 + 5322744 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 7853618 | 7862006 | a | 0 | ... | | chr1 | 7853618 | 7862006 | a | 0 | ... | | chr1 | 5734586 | 5738967 | a | 0 | ... | | chr1 | 5734586 | 5738967 | a | 0 | ... | | ... | ... | ... | ... | ... | ... | | chr1 | 8913922 | 8922134 | a | 0 | ... | | chr1 | 8913922 | 8922134 | a | 0 | ... | | chr1 | 7335056 | 7342232 | a | 0 | ... | | chr1 | 7335056 | 7342232 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 10 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 4 chr1 3223021 3232408 + 358393 5 chr1 3223021 3232408 + 1675593 2 chr1 5734586 5738967 + 819859 3 chr1 5734586 5738967 + 2143408 8 chr1 7335056 7342232 + 2420329 9 chr1 7335056 7342232 + 3743878 0 chr1 7853618 7862006 + 2938891 1 chr1 7853618 7862006 + 4262440 6 chr1 8913922 8922134 + 3999195 7 chr1 8913922 8922134 + 5322744 df2 Chromosome Start End Strand Distance 0 chr1 3223021 3232408 + 358393 1 chr1 3223021 3232408 + 1675593 4 chr1 5734586 5738967 + 819859 5 chr1 5734586 5738967 + 2143408 8 chr1 7335056 7342232 + 2420329 9 chr1 7335056 7342232 + 3743878 10 chr1 7853618 7862006 + 2938891 11 chr1 7853618 7862006 + 4262440 12 chr1 8913922 8922134 + 3999195 13 chr1 8913922 8922134 + 5322744 Actual Chromosome Start End Strand Distance 0 chr1 3223021 3232408 + 358393 1 chr1 3223021 3232408 + 1675593 2 chr1 5734586 5738967 + 819859 3 chr1 5734586 5738967 + 2143408 4 chr1 7335056 7342232 + 2420329 5 chr1 7335056 7342232 + 3743878 6 chr1 7853618 7862006 + 2938891 7 chr1 7853618 7862006 + 4262440 8 chr1 8913922 8922134 + 3999195 9 chr1 8913922 8922134 + 5322744 Expected Chromosome Start End Strand Distance 0 chr1 3223021 3232408 + 358393 1 chr1 3223021 3232408 + 1675593 2 chr1 5734586 5738967 + 819859 3 chr1 5734586 5738967 + 2143408 4 chr1 7335056 7342232 + 2420329 5 chr1 7335056 7342232 + 3743878 6 chr1 7853618 7862006 + 2938891 7 chr1 7853618 7862006 + 4262440 8 chr1 8913922 8922134 + 3999195 9 chr1 8913922 8922134 + 5322744 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=10, step=1) Expected index RangeIndex(start=0, stop=10, step=1) index equal [ True True True True True True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpvsbf9skh/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpvsbf9skh/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 3223021 3232408 - 3223020 4 chr1 6340296 6349952 - 6340295 6 chr1 7335056 7342232 - 7335055 8 chr1 8913922 8922134 - 8913921 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 6340296 | 6349952 | a | 0 | ... | | chr1 | 3223021 | 3232408 | a | 0 | ... | | chr1 | 8913922 | 8922134 | a | 0 | ... | | chr1 | 7335056 | 7342232 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 4 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 1 chr1 3223021 3232408 - 3223020 0 chr1 6340296 6349952 - 6340295 3 chr1 7335056 7342232 - 7335055 2 chr1 8913922 8922134 - 8913921 df2 Chromosome Start End Strand Distance 0 chr1 3223021 3232408 - 3223020 4 chr1 6340296 6349952 - 6340295 6 chr1 7335056 7342232 - 7335055 8 chr1 8913922 8922134 - 8913921 Actual Chromosome Start End Strand Distance 0 chr1 3223021 3232408 - 3223020 1 chr1 6340296 6349952 - 6340295 2 chr1 7335056 7342232 - 7335055 3 chr1 8913922 8922134 - 8913921 Expected Chromosome Start End Strand Distance 0 chr1 3223021 3232408 - 3223020 1 chr1 6340296 6349952 - 6340295 2 chr1 7335056 7342232 - 7335055 3 chr1 8913922 8922134 - 8913921 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=4, step=1) Expected index RangeIndex(start=0, stop=4, step=1) index equal [ True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp4sandfmf/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp4sandfmf/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 3223021 3223022 - 3223020 4 chr1 6340296 6349952 - 6340295 6 chr1 7335056 7342232 - 7335055 8 chr1 8913922 8922134 - 8913921 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 6340296 | 6349952 | a | 0 | ... | | chr1 | 3223021 | 3223022 | a | 0 | ... | | chr1 | 8913922 | 8922134 | a | 0 | ... | | chr1 | 7335056 | 7342232 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 4 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 1 chr1 3223021 3223022 - 3223020 0 chr1 6340296 6349952 - 6340295 3 chr1 7335056 7342232 - 7335055 2 chr1 8913922 8922134 - 8913921 df2 Chromosome Start End Strand Distance 0 chr1 3223021 3223022 - 3223020 4 chr1 6340296 6349952 - 6340295 6 chr1 7335056 7342232 - 7335055 8 chr1 8913922 8922134 - 8913921 Actual Chromosome Start End Strand Distance 0 chr1 3223021 3223022 - 3223020 1 chr1 6340296 6349952 - 6340295 2 chr1 7335056 7342232 - 7335055 3 chr1 8913922 8922134 - 8913921 Expected Chromosome Start End Strand Distance 0 chr1 3223021 3223022 - 3223020 1 chr1 6340296 6349952 - 6340295 2 chr1 7335056 7342232 - 7335055 3 chr1 8913922 8922134 - 8913921 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=4, step=1) Expected index RangeIndex(start=0, stop=4, step=1) index equal [ True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpxyt53cgu/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpxyt53cgu/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 3223021 3223022 - 3223020 4 chr1 6340296 6349952 - 6340295 6 chr1 7335056 7342232 - 7335055 8 chr1 8913922 8922134 - 8913921 9 chr1 9007595 9013708 - 9007594 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 9007595 | 9013708 | a | 0 | ... | | chr1 | 6340296 | 6349952 | a | 0 | ... | | chr1 | 3223021 | 3223022 | a | 0 | ... | | chr1 | 8913922 | 8922134 | a | 0 | ... | | chr1 | 7335056 | 7342232 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 5 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 2 chr1 3223021 3223022 - 3223020 1 chr1 6340296 6349952 - 6340295 4 chr1 7335056 7342232 - 7335055 3 chr1 8913922 8922134 - 8913921 0 chr1 9007595 9013708 - 9007594 df2 Chromosome Start End Strand Distance 0 chr1 3223021 3223022 - 3223020 4 chr1 6340296 6349952 - 6340295 6 chr1 7335056 7342232 - 7335055 8 chr1 8913922 8922134 - 8913921 9 chr1 9007595 9013708 - 9007594 Actual Chromosome Start End Strand Distance 0 chr1 3223021 3223022 - 3223020 1 chr1 6340296 6349952 - 6340295 2 chr1 7335056 7342232 - 7335055 3 chr1 8913922 8922134 - 8913921 4 chr1 9007595 9013708 - 9007594 Expected Chromosome Start End Strand Distance 0 chr1 3223021 3223022 - 3223020 1 chr1 6340296 6349952 - 6340295 2 chr1 7335056 7342232 - 7335055 3 chr1 8913922 8922134 - 8913921 4 chr1 9007595 9013708 - 9007594 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=5, step=1) Expected index RangeIndex(start=0, stop=5, step=1) index equal [ True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp58hcu972/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp58hcu972/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp2ugobs7r/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp2ugobs7r/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 240962 243361 - 240774 1 chr1 2920746 2920747 + 268061 2 chr1 2920746 2920747 + 497685 3 chr1 6373868 6374586 - 6373680 4 chr1 9029183 9029647 + 4318052 5 chr1 9029183 9029647 + 5839930 6 chr1 9693309 9696026 - 9693121 7 chr1 9888176 9889045 - 9887988 10 chr19 1 6285 - 8303728 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 2920746 | 2920747 | a | 0 | ... | | chr1 | 2920746 | 2920747 | a | 0 | ... | | chr1 | 9029183 | 9029647 | a | 0 | ... | | chr1 | 9029183 | 9029647 | a | 0 | ... | | ... | ... | ... | ... | ... | ... | | chr1 | 9693309 | 9696026 | a | 0 | ... | | chr1 | 240962 | 243361 | a | 0 | ... | | chr1 | 6373868 | 6374586 | a | 0 | ... | | chr1 | 9888176 | 9889045 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 9 rows and 12 columns from 2 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 8 chr19 1 6285 - 8303728 5 chr1 240962 243361 - 240774 0 chr1 2920746 2920747 + 268061 1 chr1 2920746 2920747 + 497685 6 chr1 6373868 6374586 - 6373680 2 chr1 9029183 9029647 + 4318052 3 chr1 9029183 9029647 + 5839930 4 chr1 9693309 9696026 - 9693121 7 chr1 9888176 9889045 - 9887988 df2 Chromosome Start End Strand Distance 10 chr19 1 6285 - 8303728 0 chr1 240962 243361 - 240774 1 chr1 2920746 2920747 + 268061 2 chr1 2920746 2920747 + 497685 3 chr1 6373868 6374586 - 6373680 4 chr1 9029183 9029647 + 4318052 5 chr1 9029183 9029647 + 5839930 6 chr1 9693309 9696026 - 9693121 7 chr1 9888176 9889045 - 9887988 Actual Chromosome Start End Strand Distance 0 chr1 240962 243361 - 240774 1 chr1 2920746 2920747 + 268061 2 chr1 2920746 2920747 + 497685 3 chr1 6373868 6374586 - 6373680 4 chr1 9029183 9029647 + 4318052 5 chr1 9029183 9029647 + 5839930 6 chr1 9693309 9696026 - 9693121 7 chr1 9888176 9889045 - 9887988 8 chr19 1 6285 - 8303728 Expected Chromosome Start End Strand Distance 0 chr1 240962 243361 - 240774 1 chr1 2920746 2920747 + 268061 2 chr1 2920746 2920747 + 497685 3 chr1 6373868 6374586 - 6373680 4 chr1 9029183 9029647 + 4318052 5 chr1 9029183 9029647 + 5839930 6 chr1 9693309 9696026 - 9693121 7 chr1 9888176 9889045 - 9887988 8 chr19 1 6285 - 8303728 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=9, step=1) Expected index RangeIndex(start=0, stop=9, step=1) index equal [ True True True True True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpacwdqun2/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpacwdqun2/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 2 189 + 2334620 1 chr1 2 189 + 2421883 2 chr1 2334808 2337231 - 2334620 3 chr1 2422071 2423062 - 2421883 4 chr1 3188807 3189254 - 3188619 5 chr1 4706869 4711132 - 4706681 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 2 | 189 | a | 0 | ... | | chr1 | 2 | 189 | a | 0 | ... | | chr1 | 2334808 | 2337231 | a | 0 | ... | | chr1 | 3188807 | 3189254 | a | 0 | ... | | chr1 | 4706869 | 4711132 | a | 0 | ... | | chr1 | 2422071 | 2423062 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 6 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 2 189 + 2334620 1 chr1 2 189 + 2421883 2 chr1 2334808 2337231 - 2334620 5 chr1 2422071 2423062 - 2421883 3 chr1 3188807 3189254 - 3188619 4 chr1 4706869 4711132 - 4706681 df2 Chromosome Start End Strand Distance 0 chr1 2 189 + 2334620 1 chr1 2 189 + 2421883 2 chr1 2334808 2337231 - 2334620 3 chr1 2422071 2423062 - 2421883 4 chr1 3188807 3189254 - 3188619 5 chr1 4706869 4711132 - 4706681 Actual Chromosome Start End Strand Distance 0 chr1 2 189 + 2334620 1 chr1 2 189 + 2421883 2 chr1 2334808 2337231 - 2334620 3 chr1 2422071 2423062 - 2421883 4 chr1 3188807 3189254 - 3188619 5 chr1 4706869 4711132 - 4706681 Expected Chromosome Start End Strand Distance 0 chr1 2 189 + 2334620 1 chr1 2 189 + 2421883 2 chr1 2334808 2337231 - 2334620 3 chr1 2422071 2423062 - 2421883 4 chr1 3188807 3189254 - 3188619 5 chr1 4706869 4711132 - 4706681 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=6, step=1) Expected index RangeIndex(start=0, stop=6, step=1) index equal [ True True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpxdn7zr6c/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpxdn7zr6c/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 2 189 + 2334620 1 chr1 2 189 + 2421883 2 chr1 2334808 2337231 - 2334805 3 chr1 2422071 2423062 - 2422068 4 chr1 3188807 3189254 - 3188804 5 chr1 4706869 4711132 - 4706866 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 2 | 189 | a | 0 | ... | | chr1 | 2 | 189 | a | 0 | ... | | chr1 | 2334808 | 2337231 | a | 0 | ... | | chr1 | 3188807 | 3189254 | a | 0 | ... | | chr1 | 4706869 | 4711132 | a | 0 | ... | | chr1 | 2422071 | 2423062 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 6 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 2 189 + 2334620 1 chr1 2 189 + 2421883 2 chr1 2334808 2337231 - 2334805 5 chr1 2422071 2423062 - 2422068 3 chr1 3188807 3189254 - 3188804 4 chr1 4706869 4711132 - 4706866 df2 Chromosome Start End Strand Distance 0 chr1 2 189 + 2334620 1 chr1 2 189 + 2421883 2 chr1 2334808 2337231 - 2334805 3 chr1 2422071 2423062 - 2422068 4 chr1 3188807 3189254 - 3188804 5 chr1 4706869 4711132 - 4706866 Actual Chromosome Start End Strand Distance 0 chr1 2 189 + 2334620 1 chr1 2 189 + 2421883 2 chr1 2334808 2337231 - 2334805 3 chr1 2422071 2423062 - 2422068 4 chr1 3188807 3189254 - 3188804 5 chr1 4706869 4711132 - 4706866 Expected Chromosome Start End Strand Distance 0 chr1 2 189 + 2334620 1 chr1 2 189 + 2421883 2 chr1 2334808 2337231 - 2334805 3 chr1 2422071 2423062 - 2422068 4 chr1 3188807 3189254 - 3188804 5 chr1 4706869 4711132 - 4706866 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=6, step=1) Expected index RangeIndex(start=0, stop=6, step=1) index equal [ True True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmprspp223j/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmprspp223j/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 2 chr1 2334808 2334809 + 2334807 3 chr1 3188807 3188808 + 3188806 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 2334808 | 2334809 | a | 0 | ... | | chr1 | 3188807 | 3188808 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 2334808 2334809 + 2334807 1 chr1 3188807 3188808 + 3188806 df2 Chromosome Start End Strand Distance 2 chr1 2334808 2334809 + 2334807 3 chr1 3188807 3188808 + 3188806 Actual Chromosome Start End Strand Distance 0 chr1 2334808 2334809 + 2334807 1 chr1 3188807 3188808 + 3188806 Expected Chromosome Start End Strand Distance 0 chr1 2334808 2334809 + 2334807 1 chr1 3188807 3188808 + 3188806 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=2, step=1) Expected index RangeIndex(start=0, stop=2, step=1) index equal [ True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpxaqoam3g/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpxaqoam3g/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpgazqwojs/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpgazqwojs/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpsqc44c1t/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpsqc44c1t/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmppocgolf_/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmppocgolf_/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp5nxtqbxn/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp5nxtqbxn/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpdx8q9re0/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpdx8q9re0/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp2koeq0ke/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp2koeq0ke/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 74963 74964 + 74962 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 74963 | 74964 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 74963 74964 + 74962 df2 Chromosome Start End Strand Distance 0 chr1 74963 74964 + 74962 Actual Chromosome Start End Strand Distance 0 chr1 74963 74964 + 74962 Expected Chromosome Start End Strand Distance 0 chr1 74963 74964 + 74962 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=1, step=1) Expected index RangeIndex(start=0, stop=1, step=1) index equal [ True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp7y53fwa3/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp7y53fwa3/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpmv18z56s/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpmv18z56s/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp9yifyxrb/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp9yifyxrb/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpfazm_si8/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpfazm_si8/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpcq3_lrh6/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpcq3_lrh6/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpjpbplogh/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpjpbplogh/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpvgkw0_8t/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpvgkw0_8t/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 1 chr22 3893998 3895314 - 1879989 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr22 | 3893998 | 3895314 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr22 3893998 3895314 - 1879989 df2 Chromosome Start End Strand Distance 1 chr22 3893998 3895314 - 1879989 Actual Chromosome Start End Strand Distance 0 chr22 3893998 3895314 - 1879989 Expected Chromosome Start End Strand Distance 0 chr22 3893998 3895314 - 1879989 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=1, step=1) Expected index RangeIndex(start=0, stop=1, step=1) index equal [ True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpc8m6aw1p/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpc8m6aw1p/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpam1me017/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpam1me017/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 1 chr1 1648244 1650588 + 1154877 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 1648244 | 1650588 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 1648244 1650588 + 1154877 df2 Chromosome Start End Strand Distance 1 chr1 1648244 1650588 + 1154877 Actual Chromosome Start End Strand Distance 0 chr1 1648244 1650588 + 1154877 Expected Chromosome Start End Strand Distance 0 chr1 1648244 1650588 + 1154877 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=1, step=1) Expected index RangeIndex(start=0, stop=1, step=1) index equal [ True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpestih47c/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpestih47c/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 8 chr2 2 3 - 1 9 chr2 538811 538812 - 538810 10 chr2 7490801 7490802 - 7490800 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr2 | 2 | 3 | a | 0 | ... | | chr2 | 7490801 | 7490802 | a | 0 | ... | | chr2 | 538811 | 538812 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 3 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr2 2 3 - 1 2 chr2 538811 538812 - 538810 1 chr2 7490801 7490802 - 7490800 df2 Chromosome Start End Strand Distance 8 chr2 2 3 - 1 9 chr2 538811 538812 - 538810 10 chr2 7490801 7490802 - 7490800 Actual Chromosome Start End Strand Distance 0 chr2 2 3 - 1 1 chr2 538811 538812 - 538810 2 chr2 7490801 7490802 - 7490800 Expected Chromosome Start End Strand Distance 0 chr2 2 3 - 1 1 chr2 538811 538812 - 538810 2 chr2 7490801 7490802 - 7490800 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=3, step=1) Expected index RangeIndex(start=0, stop=3, step=1) index equal [ True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp9auhi7e7/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp9auhi7e7/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 8 chr2 2 3 - 1 9 chr2 538811 538812 - 538810 10 chr2 7490801 7490802 - 7490800 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr2 | 2 | 3 | a | 0 | ... | | chr2 | 7490801 | 7490802 | a | 0 | ... | | chr2 | 538811 | 538812 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 3 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr2 2 3 - 1 2 chr2 538811 538812 - 538810 1 chr2 7490801 7490802 - 7490800 df2 Chromosome Start End Strand Distance 8 chr2 2 3 - 1 9 chr2 538811 538812 - 538810 10 chr2 7490801 7490802 - 7490800 Actual Chromosome Start End Strand Distance 0 chr2 2 3 - 1 1 chr2 538811 538812 - 538810 2 chr2 7490801 7490802 - 7490800 Expected Chromosome Start End Strand Distance 0 chr2 2 3 - 1 1 chr2 538811 538812 - 538810 2 chr2 7490801 7490802 - 7490800 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=3, step=1) Expected index RangeIndex(start=0, stop=3, step=1) index equal [ True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp1el6pz77/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp1el6pz77/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpeejhd462/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpeejhd462/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpm44tu2tr/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpm44tu2tr/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpvfn3_ict/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpvfn3_ict/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpvn1f6vct/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpvn1f6vct/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpvvhuwjnf/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpvvhuwjnf/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpof7coj_d/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpof7coj_d/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp3hp5zpvg/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp3hp5zpvg/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmphkm22ics/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmphkm22ics/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmplic7n3yg/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmplic7n3yg/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp1fwunaki/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp1fwunaki/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp6wblxnpq/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp6wblxnpq/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpsgvi82yh/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpsgvi82yh/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpi_g43tdr/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpi_g43tdr/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpnelqpr0k/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpnelqpr0k/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp2ntynl65/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp2ntynl65/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpl4ru00me/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpl4ru00me/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp5hw4_5dg/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp5hw4_5dg/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 970676 971478 + 7804839 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 970676 | 971478 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 970676 971478 + 7804839 df2 Chromosome Start End Strand Distance 0 chr1 970676 971478 + 7804839 Actual Chromosome Start End Strand Distance 0 chr1 970676 971478 + 7804839 Expected Chromosome Start End Strand Distance 0 chr1 970676 971478 + 7804839 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=1, step=1) Expected index RangeIndex(start=0, stop=1, step=1) index equal [ True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp5ze1_bnn/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp5ze1_bnn/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 970676 971478 + 7804839 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 970676 | 971478 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 970676 971478 + 7804839 df2 Chromosome Start End Strand Distance 0 chr1 970676 971478 + 7804839 Actual Chromosome Start End Strand Distance 0 chr1 970676 971478 + 7804839 Expected Chromosome Start End Strand Distance 0 chr1 970676 971478 + 7804839 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=1, step=1) Expected index RangeIndex(start=0, stop=1, step=1) index equal [ True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpv4khtuvv/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpv4khtuvv/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp4v54ep2r/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp4v54ep2r/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpsh2jpc4b/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpsh2jpc4b/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 2 chr19 1810251 1815117 - 1810250 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr19 | 1810251 | 1815117 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr19 1810251 1815117 - 1810250 df2 Chromosome Start End Strand Distance 2 chr19 1810251 1815117 - 1810250 Actual Chromosome Start End Strand Distance 0 chr19 1810251 1815117 - 1810250 Expected Chromosome Start End Strand Distance 0 chr19 1810251 1815117 - 1810250 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=1, step=1) Expected index RangeIndex(start=0, stop=1, step=1) index equal [ True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp2hni6c34/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp2hni6c34/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 1 chr18 4534250 4540402 + 4534246 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr18 | 4534250 | 4540402 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr18 4534250 4540402 + 4534246 df2 Chromosome Start End Strand Distance 1 chr18 4534250 4540402 + 4534246 Actual Chromosome Start End Strand Distance 0 chr18 4534250 4540402 + 4534246 Expected Chromosome Start End Strand Distance 0 chr18 4534250 4540402 + 4534246 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=1, step=1) Expected index RangeIndex(start=0, stop=1, step=1) index equal [ True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpnw5ogl9l/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpnw5ogl9l/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 2 chr19 1810251 1815117 - 1810250 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr19 | 1810251 | 1815117 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr19 1810251 1815117 - 1810250 df2 Chromosome Start End Strand Distance 2 chr19 1810251 1815117 - 1810250 Actual Chromosome Start End Strand Distance 0 chr19 1810251 1815117 - 1810250 Expected Chromosome Start End Strand Distance 0 chr19 1810251 1815117 - 1810250 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=1, step=1) Expected index RangeIndex(start=0, stop=1, step=1) index equal [ True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpvn_z3b3s/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpvn_z3b3s/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpqxcfztki/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpqxcfztki/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpgxbv6peh/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpgxbv6peh/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpqfoot49t/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpqfoot49t/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpimh4vey1/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpimh4vey1/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp93a8jf96/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp93a8jf96/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp3230b2p6/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp3230b2p6/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpfkqo5xb8/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpfkqo5xb8/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 3141 8794 + 6106074 1 chr1 3141 8794 + 9077627 2 chr1 1201253 1202032 + 4912836 3 chr1 1201253 1202032 + 7884389 4 chr1 1201253 1203508 - 4285672 5 chr1 1201253 1203508 - 4911360 6 chr1 1201253 1203800 + 4911068 7 chr1 1201253 1203800 + 7882621 8 chr1 1201253 1203800 + 4911068 9 chr1 1201253 1203800 + 7882621 10 chr1 1201253 1205525 + 4909343 11 chr1 1201253 1205525 + 7880896 12 chr1 1201253 1206909 - 4282271 13 chr1 1201253 1206909 - 4907959 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 1201253 | 1203800 | a | 0 | ... | | chr1 | 1201253 | 1203800 | a | 0 | ... | | chr1 | 1201253 | 1203800 | a | 0 | ... | | chr1 | 1201253 | 1203800 | a | 0 | ... | | ... | ... | ... | ... | ... | ... | | chr1 | 1201253 | 1206909 | a | 0 | ... | | chr1 | 1201253 | 1206909 | a | 0 | ... | | chr1 | 1201253 | 1203508 | a | 0 | ... | | chr1 | 1201253 | 1203508 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 14 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 4 chr1 3141 8794 + 6106074 5 chr1 3141 8794 + 9077627 6 chr1 1201253 1202032 + 4912836 7 chr1 1201253 1202032 + 7884389 12 chr1 1201253 1203508 - 4285672 13 chr1 1201253 1203508 - 4911360 0 chr1 1201253 1203800 + 4911068 2 chr1 1201253 1203800 + 4911068 1 chr1 1201253 1203800 + 7882621 3 chr1 1201253 1203800 + 7882621 8 chr1 1201253 1205525 + 4909343 9 chr1 1201253 1205525 + 7880896 10 chr1 1201253 1206909 - 4282271 11 chr1 1201253 1206909 - 4907959 df2 Chromosome Start End Strand Distance 0 chr1 3141 8794 + 6106074 1 chr1 3141 8794 + 9077627 2 chr1 1201253 1202032 + 4912836 3 chr1 1201253 1202032 + 7884389 4 chr1 1201253 1203508 - 4285672 5 chr1 1201253 1203508 - 4911360 6 chr1 1201253 1203800 + 4911068 8 chr1 1201253 1203800 + 4911068 7 chr1 1201253 1203800 + 7882621 9 chr1 1201253 1203800 + 7882621 10 chr1 1201253 1205525 + 4909343 11 chr1 1201253 1205525 + 7880896 12 chr1 1201253 1206909 - 4282271 13 chr1 1201253 1206909 - 4907959 Actual Chromosome Start End Strand Distance 0 chr1 3141 8794 + 6106074 1 chr1 3141 8794 + 9077627 2 chr1 1201253 1202032 + 4912836 3 chr1 1201253 1202032 + 7884389 4 chr1 1201253 1203508 - 4285672 5 chr1 1201253 1203508 - 4911360 6 chr1 1201253 1203800 + 4911068 7 chr1 1201253 1203800 + 4911068 8 chr1 1201253 1203800 + 7882621 9 chr1 1201253 1203800 + 7882621 10 chr1 1201253 1205525 + 4909343 11 chr1 1201253 1205525 + 7880896 12 chr1 1201253 1206909 - 4282271 13 chr1 1201253 1206909 - 4907959 Expected Chromosome Start End Strand Distance 0 chr1 3141 8794 + 6106074 1 chr1 3141 8794 + 9077627 2 chr1 1201253 1202032 + 4912836 3 chr1 1201253 1202032 + 7884389 4 chr1 1201253 1203508 - 4285672 5 chr1 1201253 1203508 - 4911360 6 chr1 1201253 1203800 + 4911068 7 chr1 1201253 1203800 + 4911068 8 chr1 1201253 1203800 + 7882621 9 chr1 1201253 1203800 + 7882621 10 chr1 1201253 1205525 + 4909343 11 chr1 1201253 1205525 + 7880896 12 chr1 1201253 1206909 - 4282271 13 chr1 1201253 1206909 - 4907959 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=14, step=1) Expected index RangeIndex(start=0, stop=14, step=1) index equal [ True True True True True True True True True True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpj0j2h87z/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpj0j2h87z/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 2 chr1 1201253 1203508 - 4285672 3 chr1 1201253 1203508 - 4911360 7 chr1 1201253 1206909 - 4282271 8 chr1 1201253 1206909 - 4907959 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 1201253 | 1206909 | a | 0 | ... | | chr1 | 1201253 | 1206909 | a | 0 | ... | | chr1 | 1201253 | 1203508 | a | 0 | ... | | chr1 | 1201253 | 1203508 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 4 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 2 chr1 1201253 1203508 - 4285672 3 chr1 1201253 1203508 - 4911360 0 chr1 1201253 1206909 - 4282271 1 chr1 1201253 1206909 - 4907959 df2 Chromosome Start End Strand Distance 2 chr1 1201253 1203508 - 4285672 3 chr1 1201253 1203508 - 4911360 7 chr1 1201253 1206909 - 4282271 8 chr1 1201253 1206909 - 4907959 Actual Chromosome Start End Strand Distance 0 chr1 1201253 1203508 - 4285672 1 chr1 1201253 1203508 - 4911360 2 chr1 1201253 1206909 - 4282271 3 chr1 1201253 1206909 - 4907959 Expected Chromosome Start End Strand Distance 0 chr1 1201253 1203508 - 4285672 1 chr1 1201253 1203508 - 4911360 2 chr1 1201253 1206909 - 4282271 3 chr1 1201253 1206909 - 4907959 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=4, step=1) Expected index RangeIndex(start=0, stop=4, step=1) index equal [ True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpj13ayfgz/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpj13ayfgz/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 5 chr1 1201253 1205946 - 4283234 6 chr1 1201253 1205946 - 4908922 7 chr1 1201253 1205946 - 4283234 8 chr1 1201253 1205946 - 4908922 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 1201253 | 1205946 | a | 0 | ... | | chr1 | 1201253 | 1205946 | a | 0 | ... | | chr1 | 1201253 | 1205946 | a | 0 | ... | | chr1 | 1201253 | 1205946 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 4 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 1201253 1205946 - 4283234 2 chr1 1201253 1205946 - 4283234 1 chr1 1201253 1205946 - 4908922 3 chr1 1201253 1205946 - 4908922 df2 Chromosome Start End Strand Distance 5 chr1 1201253 1205946 - 4283234 7 chr1 1201253 1205946 - 4283234 6 chr1 1201253 1205946 - 4908922 8 chr1 1201253 1205946 - 4908922 Actual Chromosome Start End Strand Distance 0 chr1 1201253 1205946 - 4283234 1 chr1 1201253 1205946 - 4283234 2 chr1 1201253 1205946 - 4908922 3 chr1 1201253 1205946 - 4908922 Expected Chromosome Start End Strand Distance 0 chr1 1201253 1205946 - 4283234 1 chr1 1201253 1205946 - 4283234 2 chr1 1201253 1205946 - 4908922 3 chr1 1201253 1205946 - 4908922 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=4, step=1) Expected index RangeIndex(start=0, stop=4, step=1) index equal [ True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp1js3ha8f/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp1js3ha8f/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 5 chr1 1201253 1205946 - 4283234 6 chr1 1201253 1205946 - 4908922 7 chr1 1201253 1205946 - 4283234 8 chr1 1201253 1205946 - 4908922 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 1201253 | 1205946 | a | 0 | ... | | chr1 | 1201253 | 1205946 | a | 0 | ... | | chr1 | 1201253 | 1205946 | a | 0 | ... | | chr1 | 1201253 | 1205946 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 4 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 1201253 1205946 - 4283234 2 chr1 1201253 1205946 - 4283234 1 chr1 1201253 1205946 - 4908922 3 chr1 1201253 1205946 - 4908922 df2 Chromosome Start End Strand Distance 5 chr1 1201253 1205946 - 4283234 7 chr1 1201253 1205946 - 4283234 6 chr1 1201253 1205946 - 4908922 8 chr1 1201253 1205946 - 4908922 Actual Chromosome Start End Strand Distance 0 chr1 1201253 1205946 - 4283234 1 chr1 1201253 1205946 - 4283234 2 chr1 1201253 1205946 - 4908922 3 chr1 1201253 1205946 - 4908922 Expected Chromosome Start End Strand Distance 0 chr1 1201253 1205946 - 4283234 1 chr1 1201253 1205946 - 4283234 2 chr1 1201253 1205946 - 4908922 3 chr1 1201253 1205946 - 4908922 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=4, step=1) Expected index RangeIndex(start=0, stop=4, step=1) index equal [ True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpru9qqpgf/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpru9qqpgf/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 5 chr1 9 18 - 8 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 9 | 18 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 9 18 - 8 df2 Chromosome Start End Strand Distance 5 chr1 9 18 - 8 Actual Chromosome Start End Strand Distance 0 chr1 9 18 - 8 Expected Chromosome Start End Strand Distance 0 chr1 9 18 - 8 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=1, step=1) Expected index RangeIndex(start=0, stop=1, step=1) index equal [ True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpvu0tqunl/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpvu0tqunl/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 5 chr1 9 18 - 8 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 9 | 18 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 9 18 - 8 df2 Chromosome Start End Strand Distance 5 chr1 9 18 - 8 Actual Chromosome Start End Strand Distance 0 chr1 9 18 - 8 Expected Chromosome Start End Strand Distance 0 chr1 9 18 - 8 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=1, step=1) Expected index RangeIndex(start=0, stop=1, step=1) index equal [ True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp05u4hj0e/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp05u4hj0e/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 5 chr1 9 18 + 8 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 9 | 18 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 9 18 + 8 df2 Chromosome Start End Strand Distance 5 chr1 9 18 + 8 Actual Chromosome Start End Strand Distance 0 chr1 9 18 + 8 Expected Chromosome Start End Strand Distance 0 chr1 9 18 + 8 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=1, step=1) Expected index RangeIndex(start=0, stop=1, step=1) index equal [ True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpw7at7lo0/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpw7at7lo0/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp7a_nvy5l/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp7a_nvy5l/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp2zhnjszj/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp2zhnjszj/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpsr6f90bd/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpsr6f90bd/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpvu49sye8/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpvu49sye8/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpjzba0f9x/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpjzba0f9x/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmphyrtzvjh/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmphyrtzvjh/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmplauofevf/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmplauofevf/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 1410133 1413613 + 1628662 1 chr1 1410133 1413613 + 2147202 7 chr7 6602063 6605164 - 3538372 9 chrY 3521306 3531106 + 475277 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 1410133 | 1413613 | a | 0 | ... | | chr1 | 1410133 | 1413613 | a | 0 | ... | | chr7 | 6602063 | 6605164 | a | 0 | ... | | chrY | 3521306 | 3531106 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 4 rows and 12 columns from 3 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 1410133 1413613 + 1628662 1 chr1 1410133 1413613 + 2147202 3 chrY 3521306 3531106 + 475277 2 chr7 6602063 6605164 - 3538372 df2 Chromosome Start End Strand Distance 0 chr1 1410133 1413613 + 1628662 1 chr1 1410133 1413613 + 2147202 9 chrY 3521306 3531106 + 475277 7 chr7 6602063 6605164 - 3538372 Actual Chromosome Start End Strand Distance 0 chr1 1410133 1413613 + 1628662 1 chr1 1410133 1413613 + 2147202 2 chr7 6602063 6605164 - 3538372 3 chrY 3521306 3531106 + 475277 Expected Chromosome Start End Strand Distance 0 chr1 1410133 1413613 + 1628662 1 chr1 1410133 1413613 + 2147202 2 chr7 6602063 6605164 - 3538372 3 chrY 3521306 3531106 + 475277 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=4, step=1) Expected index RangeIndex(start=0, stop=4, step=1) index equal [ True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpcp1alzcg/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpcp1alzcg/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 1 chr1 6780047 6785407 - 6780046 4 chr6 1653395 1656496 - 1653394 6 chr7 6602063 6605164 - 6602062 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 6780047 | 6785407 | a | 0 | ... | | chr6 | 1653395 | 1656496 | a | 0 | ... | | chr7 | 6602063 | 6605164 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 3 rows and 12 columns from 3 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 1 chr6 1653395 1656496 - 1653394 2 chr7 6602063 6605164 - 6602062 0 chr1 6780047 6785407 - 6780046 df2 Chromosome Start End Strand Distance 4 chr6 1653395 1656496 - 1653394 6 chr7 6602063 6605164 - 6602062 1 chr1 6780047 6785407 - 6780046 Actual Chromosome Start End Strand Distance 0 chr1 6780047 6785407 - 6780046 1 chr6 1653395 1656496 - 1653394 2 chr7 6602063 6605164 - 6602062 Expected Chromosome Start End Strand Distance 0 chr1 6780047 6785407 - 6780046 1 chr6 1653395 1656496 - 1653394 2 chr7 6602063 6605164 - 6602062 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=3, step=1) Expected index RangeIndex(start=0, stop=3, step=1) index equal [ True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp7od92kiv/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp7od92kiv/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 1410133 1413613 + 5366435 1 chr1 6780047 6785407 - 5366435 5 chr7 5575555 5579185 + 1022879 6 chr7 6602063 6605164 - 1022879 7 chr7 6602063 6605164 - 3186841 8 chr7 9792004 9795105 + 3186841 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 1410133 | 1413613 | a | 0 | ... | | chr1 | 6780047 | 6785407 | a | 0 | ... | | chr7 | 5575555 | 5579185 | a | 0 | ... | | chr7 | 9792004 | 9795105 | a | 0 | ... | | chr7 | 6602063 | 6605164 | a | 0 | ... | | chr7 | 6602063 | 6605164 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 6 rows and 12 columns from 2 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 1410133 1413613 + 5366435 2 chr7 5575555 5579185 + 1022879 4 chr7 6602063 6605164 - 1022879 5 chr7 6602063 6605164 - 3186841 1 chr1 6780047 6785407 - 5366435 3 chr7 9792004 9795105 + 3186841 df2 Chromosome Start End Strand Distance 0 chr1 1410133 1413613 + 5366435 5 chr7 5575555 5579185 + 1022879 6 chr7 6602063 6605164 - 1022879 7 chr7 6602063 6605164 - 3186841 1 chr1 6780047 6785407 - 5366435 8 chr7 9792004 9795105 + 3186841 Actual Chromosome Start End Strand Distance 0 chr1 1410133 1413613 + 5366435 1 chr1 6780047 6785407 - 5366435 2 chr7 5575555 5579185 + 1022879 3 chr7 6602063 6605164 - 1022879 4 chr7 6602063 6605164 - 3186841 5 chr7 9792004 9795105 + 3186841 Expected Chromosome Start End Strand Distance 0 chr1 1410133 1413613 + 5366435 1 chr1 6780047 6785407 - 5366435 2 chr7 5575555 5579185 + 1022879 3 chr7 6602063 6605164 - 1022879 4 chr7 6602063 6605164 - 3186841 5 chr7 9792004 9795105 + 3186841 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=6, step=1) Expected index RangeIndex(start=0, stop=6, step=1) index equal [ True True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp0lsmv606/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp0lsmv606/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 1410133 1413613 + 5366435 1 chr1 6780047 6785407 - 5366435 5 chr7 5575555 5579185 + 1022879 6 chr7 6602063 6605164 - 1022879 7 chr7 6602063 6605164 - 3186841 8 chr7 9792004 9795105 + 3186841 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 1410133 | 1413613 | a | 0 | ... | | chr1 | 6780047 | 6785407 | a | 0 | ... | | chr7 | 5575555 | 5579185 | a | 0 | ... | | chr7 | 9792004 | 9795105 | a | 0 | ... | | chr7 | 6602063 | 6605164 | a | 0 | ... | | chr7 | 6602063 | 6605164 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 6 rows and 12 columns from 2 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 1410133 1413613 + 5366435 2 chr7 5575555 5579185 + 1022879 4 chr7 6602063 6605164 - 1022879 5 chr7 6602063 6605164 - 3186841 1 chr1 6780047 6785407 - 5366435 3 chr7 9792004 9795105 + 3186841 df2 Chromosome Start End Strand Distance 0 chr1 1410133 1413613 + 5366435 5 chr7 5575555 5579185 + 1022879 6 chr7 6602063 6605164 - 1022879 7 chr7 6602063 6605164 - 3186841 1 chr1 6780047 6785407 - 5366435 8 chr7 9792004 9795105 + 3186841 Actual Chromosome Start End Strand Distance 0 chr1 1410133 1413613 + 5366435 1 chr1 6780047 6785407 - 5366435 2 chr7 5575555 5579185 + 1022879 3 chr7 6602063 6605164 - 1022879 4 chr7 6602063 6605164 - 3186841 5 chr7 9792004 9795105 + 3186841 Expected Chromosome Start End Strand Distance 0 chr1 1410133 1413613 + 5366435 1 chr1 6780047 6785407 - 5366435 2 chr7 5575555 5579185 + 1022879 3 chr7 6602063 6605164 - 1022879 4 chr7 6602063 6605164 - 3186841 5 chr7 9792004 9795105 + 3186841 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=6, step=1) Expected index RangeIndex(start=0, stop=6, step=1) index equal [ True True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpbazuc0h4/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpbazuc0h4/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 1410133 1413613 + 1400722 1 chr1 1410133 1413613 + 1403674 2 chr1 6780047 6785407 - 6774559 3 chr19 6780047 6782739 + 6780041 9 chrY 3521306 3531106 + 3515792 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 1410133 | 1413613 | a | 0 | ... | | chr1 | 1410133 | 1413613 | a | 0 | ... | | chr1 | 6780047 | 6785407 | a | 0 | ... | | chr19 | 6780047 | 6782739 | a | 0 | ... | | chrY | 3521306 | 3531106 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 5 rows and 12 columns from 3 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 1410133 1413613 + 1400722 1 chr1 1410133 1413613 + 1403674 4 chrY 3521306 3531106 + 3515792 3 chr19 6780047 6782739 + 6780041 2 chr1 6780047 6785407 - 6774559 df2 Chromosome Start End Strand Distance 0 chr1 1410133 1413613 + 1400722 1 chr1 1410133 1413613 + 1403674 9 chrY 3521306 3531106 + 3515792 3 chr19 6780047 6782739 + 6780041 2 chr1 6780047 6785407 - 6774559 Actual Chromosome Start End Strand Distance 0 chr1 1410133 1413613 + 1400722 1 chr1 1410133 1413613 + 1403674 2 chr1 6780047 6785407 - 6774559 3 chr19 6780047 6782739 + 6780041 4 chrY 3521306 3531106 + 3515792 Expected Chromosome Start End Strand Distance 0 chr1 1410133 1413613 + 1400722 1 chr1 1410133 1413613 + 1403674 2 chr1 6780047 6785407 - 6774559 3 chr19 6780047 6782739 + 6780041 4 chrY 3521306 3531106 + 3515792 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=5, step=1) Expected index RangeIndex(start=0, stop=5, step=1) index equal [ True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp718a4kpc/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp718a4kpc/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 1410133 1413613 + 1410132 1 chr1 6780047 6785407 - 6780040 2 chr1 6780047 6785407 - 6780046 3 chr19 6780047 6782739 + 6780046 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 1410133 | 1413613 | a | 0 | ... | | chr1 | 6780047 | 6785407 | a | 0 | ... | | chr1 | 6780047 | 6785407 | a | 0 | ... | | chr19 | 6780047 | 6782739 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 4 rows and 12 columns from 2 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 1410133 1413613 + 1410132 3 chr19 6780047 6782739 + 6780046 1 chr1 6780047 6785407 - 6780040 2 chr1 6780047 6785407 - 6780046 df2 Chromosome Start End Strand Distance 0 chr1 1410133 1413613 + 1410132 3 chr19 6780047 6782739 + 6780046 1 chr1 6780047 6785407 - 6780040 2 chr1 6780047 6785407 - 6780046 Actual Chromosome Start End Strand Distance 0 chr1 1410133 1413613 + 1410132 1 chr1 6780047 6785407 - 6780040 2 chr1 6780047 6785407 - 6780046 3 chr19 6780047 6782739 + 6780046 Expected Chromosome Start End Strand Distance 0 chr1 1410133 1413613 + 1410132 1 chr1 6780047 6785407 - 6780040 2 chr1 6780047 6785407 - 6780046 3 chr19 6780047 6782739 + 6780046 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=4, step=1) Expected index RangeIndex(start=0, stop=4, step=1) index equal [ True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpxo03t4t9/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpxo03t4t9/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 1410133 1413613 + 1410126 1 chr1 1410133 1413613 + 1410127 3 chr19 6780047 6782739 + 6780041 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 1410133 | 1413613 | a | 0 | ... | | chr1 | 1410133 | 1413613 | a | 0 | ... | | chr19 | 6780047 | 6782739 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 3 rows and 12 columns from 2 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 1410133 1413613 + 1410126 1 chr1 1410133 1413613 + 1410127 2 chr19 6780047 6782739 + 6780041 df2 Chromosome Start End Strand Distance 0 chr1 1410133 1413613 + 1410126 1 chr1 1410133 1413613 + 1410127 3 chr19 6780047 6782739 + 6780041 Actual Chromosome Start End Strand Distance 0 chr1 1410133 1413613 + 1410126 1 chr1 1410133 1413613 + 1410127 2 chr19 6780047 6782739 + 6780041 Expected Chromosome Start End Strand Distance 0 chr1 1410133 1413613 + 1410126 1 chr1 1410133 1413613 + 1410127 2 chr19 6780047 6782739 + 6780041 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=3, step=1) Expected index RangeIndex(start=0, stop=3, step=1) index equal [ True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp_9yhodsp/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp_9yhodsp/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 2667475 2674928 + 527076 1 chr1 5146923 5153574 + 1941855 2 chr1 5146923 5153574 + 1943976 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 2667475 | 2674928 | a | 0 | ... | | chr1 | 5146923 | 5153574 | a | 0 | ... | | chr1 | 5146923 | 5153574 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 3 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 2667475 2674928 + 527076 1 chr1 5146923 5153574 + 1941855 2 chr1 5146923 5153574 + 1943976 df2 Chromosome Start End Strand Distance 0 chr1 2667475 2674928 + 527076 1 chr1 5146923 5153574 + 1941855 2 chr1 5146923 5153574 + 1943976 Actual Chromosome Start End Strand Distance 0 chr1 2667475 2674928 + 527076 1 chr1 5146923 5153574 + 1941855 2 chr1 5146923 5153574 + 1943976 Expected Chromosome Start End Strand Distance 0 chr1 2667475 2674928 + 527076 1 chr1 5146923 5153574 + 1941855 2 chr1 5146923 5153574 + 1943976 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=3, step=1) Expected index RangeIndex(start=0, stop=3, step=1) index equal [ True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp0c5aryih/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp0c5aryih/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 2 chr15 2092175 2095433 - 5235958 3 chr15 2092175 2095433 - 7627316 4 chr15 7331390 7335971 + 5235958 5 chr15 9722748 9724952 + 7627316 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr15 | 9722748 | 9724952 | a | 0 | ... | | chr15 | 7331390 | 7335971 | a | 0 | ... | | chr15 | 2092175 | 2095433 | a | 0 | ... | | chr15 | 2092175 | 2095433 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 4 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 2 chr15 2092175 2095433 - 5235958 3 chr15 2092175 2095433 - 7627316 1 chr15 7331390 7335971 + 5235958 0 chr15 9722748 9724952 + 7627316 df2 Chromosome Start End Strand Distance 2 chr15 2092175 2095433 - 5235958 3 chr15 2092175 2095433 - 7627316 4 chr15 7331390 7335971 + 5235958 5 chr15 9722748 9724952 + 7627316 Actual Chromosome Start End Strand Distance 0 chr15 2092175 2095433 - 5235958 1 chr15 2092175 2095433 - 7627316 2 chr15 7331390 7335971 + 5235958 3 chr15 9722748 9724952 + 7627316 Expected Chromosome Start End Strand Distance 0 chr15 2092175 2095433 - 5235958 1 chr15 2092175 2095433 - 7627316 2 chr15 7331390 7335971 + 5235958 3 chr15 9722748 9724952 + 7627316 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=4, step=1) Expected index RangeIndex(start=0, stop=4, step=1) index equal [ True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpv3v67s8_/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpv3v67s8_/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 2 chr15 2092175 2095433 - 2092173 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr15 | 2092175 | 2095433 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr15 2092175 2095433 - 2092173 df2 Chromosome Start End Strand Distance 2 chr15 2092175 2095433 - 2092173 Actual Chromosome Start End Strand Distance 0 chr15 2092175 2095433 - 2092173 Expected Chromosome Start End Strand Distance 0 chr15 2092175 2095433 - 2092173 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=1, step=1) Expected index RangeIndex(start=0, stop=1, step=1) index equal [ True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpjhazs9fk/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpjhazs9fk/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 1 chr15 2092175 2095433 - 2092173 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr15 | 2092175 | 2095433 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr15 2092175 2095433 - 2092173 df2 Chromosome Start End Strand Distance 1 chr15 2092175 2095433 - 2092173 Actual Chromosome Start End Strand Distance 0 chr15 2092175 2095433 - 2092173 Expected Chromosome Start End Strand Distance 0 chr15 2092175 2095433 - 2092173 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=1, step=1) Expected index RangeIndex(start=0, stop=1, step=1) index equal [ True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpdy_82dfs/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpdy_82dfs/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 1 chr15 2092175 2095433 - 2092173 2 chr15 2092175 2095433 - 2092174 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr15 | 2092175 | 2095433 | a | 0 | ... | | chr15 | 2092175 | 2095433 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr15 2092175 2095433 - 2092173 1 chr15 2092175 2095433 - 2092174 df2 Chromosome Start End Strand Distance 1 chr15 2092175 2095433 - 2092173 2 chr15 2092175 2095433 - 2092174 Actual Chromosome Start End Strand Distance 0 chr15 2092175 2095433 - 2092173 1 chr15 2092175 2095433 - 2092174 Expected Chromosome Start End Strand Distance 0 chr15 2092175 2095433 - 2092173 1 chr15 2092175 2095433 - 2092174 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=2, step=1) Expected index RangeIndex(start=0, stop=2, step=1) index equal [ True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp07fmumth/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp07fmumth/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpwebpilvn/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpwebpilvn/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpw6pcd0oh/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpw6pcd0oh/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpbje2xi0k/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpbje2xi0k/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpytk6b5qm/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpytk6b5qm/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpksike46s/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpksike46s/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 2380380 2386534 - 2373690 1 chr1 5519120 5519121 - 5512430 2 chr1 8507101 8515980 + 331538 3 chr1 8507101 8515980 + 1359105 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 8507101 | 8515980 | a | 0 | ... | | chr1 | 8507101 | 8515980 | a | 0 | ... | | chr1 | 5519120 | 5519121 | a | 0 | ... | | chr1 | 2380380 | 2386534 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 4 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 3 chr1 2380380 2386534 - 2373690 2 chr1 5519120 5519121 - 5512430 0 chr1 8507101 8515980 + 331538 1 chr1 8507101 8515980 + 1359105 df2 Chromosome Start End Strand Distance 0 chr1 2380380 2386534 - 2373690 1 chr1 5519120 5519121 - 5512430 2 chr1 8507101 8515980 + 331538 3 chr1 8507101 8515980 + 1359105 Actual Chromosome Start End Strand Distance 0 chr1 2380380 2386534 - 2373690 1 chr1 5519120 5519121 - 5512430 2 chr1 8507101 8515980 + 331538 3 chr1 8507101 8515980 + 1359105 Expected Chromosome Start End Strand Distance 0 chr1 2380380 2386534 - 2373690 1 chr1 5519120 5519121 - 5512430 2 chr1 8507101 8515980 + 331538 3 chr1 8507101 8515980 + 1359105 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=4, step=1) Expected index RangeIndex(start=0, stop=4, step=1) index equal [ True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpndhaerov/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpndhaerov/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp05dkyurp/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp05dkyurp/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpk7p7dvxd/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpk7p7dvxd/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmppzq0vbid/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmppzq0vbid/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp72cmkp29/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp72cmkp29/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 1 chr2 4235003 4235004 - 4235002 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr2 | 4235003 | 4235004 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr2 4235003 4235004 - 4235002 df2 Chromosome Start End Strand Distance 1 chr2 4235003 4235004 - 4235002 Actual Chromosome Start End Strand Distance 0 chr2 4235003 4235004 - 4235002 Expected Chromosome Start End Strand Distance 0 chr2 4235003 4235004 - 4235002 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=1, step=1) Expected index RangeIndex(start=0, stop=1, step=1) index equal [ True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpgd44sadq/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpgd44sadq/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 38885 44633 - 8696416 1 chr1 2058525 2064048 - 6677001 4 chr1 3423528 3431230 - 5309819 6 chr1 5102923 5110932 - 3630117 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 3423528 | 3431230 | a | 0 | ... | | chr1 | 5102923 | 5110932 | a | 0 | ... | | chr1 | 38885 | 44633 | a | 0 | ... | | chr1 | 2058525 | 2064048 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 4 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 2 chr1 38885 44633 - 8696416 3 chr1 2058525 2064048 - 6677001 0 chr1 3423528 3431230 - 5309819 1 chr1 5102923 5110932 - 3630117 df2 Chromosome Start End Strand Distance 0 chr1 38885 44633 - 8696416 1 chr1 2058525 2064048 - 6677001 4 chr1 3423528 3431230 - 5309819 6 chr1 5102923 5110932 - 3630117 Actual Chromosome Start End Strand Distance 0 chr1 38885 44633 - 8696416 1 chr1 2058525 2064048 - 6677001 2 chr1 3423528 3431230 - 5309819 3 chr1 5102923 5110932 - 3630117 Expected Chromosome Start End Strand Distance 0 chr1 38885 44633 - 8696416 1 chr1 2058525 2064048 - 6677001 2 chr1 3423528 3431230 - 5309819 3 chr1 5102923 5110932 - 3630117 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=4, step=1) Expected index RangeIndex(start=0, stop=4, step=1) index equal [ True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpkxgtmln5/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpkxgtmln5/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 1 chr1 5523 11046 - 8730003 2 chr1 5748 11496 - 8729553 5 chr1 7702 15404 - 8725645 6 chr1 8009 16018 - 8725031 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 7702 | 15404 | a | 0 | ... | | chr1 | 8009 | 16018 | a | 0 | ... | | chr1 | 5748 | 11496 | a | 0 | ... | | chr1 | 5523 | 11046 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 4 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 3 chr1 5523 11046 - 8730003 2 chr1 5748 11496 - 8729553 0 chr1 7702 15404 - 8725645 1 chr1 8009 16018 - 8725031 df2 Chromosome Start End Strand Distance 1 chr1 5523 11046 - 8730003 2 chr1 5748 11496 - 8729553 5 chr1 7702 15404 - 8725645 6 chr1 8009 16018 - 8725031 Actual Chromosome Start End Strand Distance 0 chr1 5523 11046 - 8730003 1 chr1 5748 11496 - 8729553 2 chr1 7702 15404 - 8725645 3 chr1 8009 16018 - 8725031 Expected Chromosome Start End Strand Distance 0 chr1 5523 11046 - 8730003 1 chr1 5748 11496 - 8729553 2 chr1 7702 15404 - 8725645 3 chr1 8009 16018 - 8725031 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=4, step=1) Expected index RangeIndex(start=0, stop=4, step=1) index equal [ True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpb4hs5ga7/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpb4hs5ga7/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 4279 8558 + 8732491 1 chr1 5523 11046 - 8730003 2 chr1 5748 11496 - 8729553 3 chr1 7438 14876 + 8726173 4 chr1 7598 15196 + 8725853 5 chr1 7702 15404 - 8725645 6 chr1 8009 16018 - 8725031 7 chr1 8109 16218 + 8724831 8 chr1 8250 16500 + 8724549 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 8250 | 16500 | a | 0 | ... | | chr1 | 4279 | 8558 | a | 0 | ... | | chr1 | 8109 | 16218 | a | 0 | ... | | chr1 | 7598 | 15196 | a | 0 | ... | | ... | ... | ... | ... | ... | ... | | chr1 | 7702 | 15404 | a | 0 | ... | | chr1 | 8009 | 16018 | a | 0 | ... | | chr1 | 5748 | 11496 | a | 0 | ... | | chr1 | 5523 | 11046 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 9 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 1 chr1 4279 8558 + 8732491 8 chr1 5523 11046 - 8730003 7 chr1 5748 11496 - 8729553 4 chr1 7438 14876 + 8726173 3 chr1 7598 15196 + 8725853 5 chr1 7702 15404 - 8725645 6 chr1 8009 16018 - 8725031 2 chr1 8109 16218 + 8724831 0 chr1 8250 16500 + 8724549 df2 Chromosome Start End Strand Distance 0 chr1 4279 8558 + 8732491 1 chr1 5523 11046 - 8730003 2 chr1 5748 11496 - 8729553 3 chr1 7438 14876 + 8726173 4 chr1 7598 15196 + 8725853 5 chr1 7702 15404 - 8725645 6 chr1 8009 16018 - 8725031 7 chr1 8109 16218 + 8724831 8 chr1 8250 16500 + 8724549 Actual Chromosome Start End Strand Distance 0 chr1 4279 8558 + 8732491 1 chr1 5523 11046 - 8730003 2 chr1 5748 11496 - 8729553 3 chr1 7438 14876 + 8726173 4 chr1 7598 15196 + 8725853 5 chr1 7702 15404 - 8725645 6 chr1 8009 16018 - 8725031 7 chr1 8109 16218 + 8724831 8 chr1 8250 16500 + 8724549 Expected Chromosome Start End Strand Distance 0 chr1 4279 8558 + 8732491 1 chr1 5523 11046 - 8730003 2 chr1 5748 11496 - 8729553 3 chr1 7438 14876 + 8726173 4 chr1 7598 15196 + 8725853 5 chr1 7702 15404 - 8725645 6 chr1 8009 16018 - 8725031 7 chr1 8109 16218 + 8724831 8 chr1 8250 16500 + 8724549 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=9, step=1) Expected index RangeIndex(start=0, stop=9, step=1) index equal [ True True True True True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpz4d8bl7n/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpz4d8bl7n/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp0zld1cq8/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp0zld1cq8/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpyxfo2fov/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpyxfo2fov/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpye24wbdy/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpye24wbdy/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpkmtth76e/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpkmtth76e/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 630226 630227 + 626764 1 chr1 630226 630227 + 2663113 2 chr1 2104866 2104867 + 1188473 3 chr1 2104866 2104867 + 2101404 4 chr1 2104866 2104867 + 1188473 5 chr1 2104866 2104867 + 2101404 6 chr1 2283357 2283358 + 1009982 7 chr1 2283357 2283358 + 2279895 8 chr1 3934836 3934837 + 639950 9 chr1 3934836 3934837 + 3931374 10 chr1 9244439 9244440 + 5949553 11 chr1 9244439 9244440 + 9240977 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 2283357 | 2283358 | a | 0 | ... | | chr1 | 2283357 | 2283358 | a | 0 | ... | | chr1 | 630226 | 630227 | a | 0 | ... | | chr1 | 630226 | 630227 | a | 0 | ... | | ... | ... | ... | ... | ... | ... | | chr1 | 2104866 | 2104867 | a | 0 | ... | | chr1 | 2104866 | 2104867 | a | 0 | ... | | chr1 | 3934836 | 3934837 | a | 0 | ... | | chr1 | 3934836 | 3934837 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 12 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 2 chr1 630226 630227 + 626764 3 chr1 630226 630227 + 2663113 4 chr1 2104866 2104867 + 1188473 8 chr1 2104866 2104867 + 1188473 5 chr1 2104866 2104867 + 2101404 9 chr1 2104866 2104867 + 2101404 0 chr1 2283357 2283358 + 1009982 1 chr1 2283357 2283358 + 2279895 10 chr1 3934836 3934837 + 639950 11 chr1 3934836 3934837 + 3931374 6 chr1 9244439 9244440 + 5949553 7 chr1 9244439 9244440 + 9240977 df2 Chromosome Start End Strand Distance 0 chr1 630226 630227 + 626764 1 chr1 630226 630227 + 2663113 2 chr1 2104866 2104867 + 1188473 4 chr1 2104866 2104867 + 1188473 3 chr1 2104866 2104867 + 2101404 5 chr1 2104866 2104867 + 2101404 6 chr1 2283357 2283358 + 1009982 7 chr1 2283357 2283358 + 2279895 8 chr1 3934836 3934837 + 639950 9 chr1 3934836 3934837 + 3931374 10 chr1 9244439 9244440 + 5949553 11 chr1 9244439 9244440 + 9240977 Actual Chromosome Start End Strand Distance 0 chr1 630226 630227 + 626764 1 chr1 630226 630227 + 2663113 2 chr1 2104866 2104867 + 1188473 3 chr1 2104866 2104867 + 1188473 4 chr1 2104866 2104867 + 2101404 5 chr1 2104866 2104867 + 2101404 6 chr1 2283357 2283358 + 1009982 7 chr1 2283357 2283358 + 2279895 8 chr1 3934836 3934837 + 639950 9 chr1 3934836 3934837 + 3931374 10 chr1 9244439 9244440 + 5949553 11 chr1 9244439 9244440 + 9240977 Expected Chromosome Start End Strand Distance 0 chr1 630226 630227 + 626764 1 chr1 630226 630227 + 2663113 2 chr1 2104866 2104867 + 1188473 3 chr1 2104866 2104867 + 1188473 4 chr1 2104866 2104867 + 2101404 5 chr1 2104866 2104867 + 2101404 6 chr1 2283357 2283358 + 1009982 7 chr1 2283357 2283358 + 2279895 8 chr1 3934836 3934837 + 639950 9 chr1 3934836 3934837 + 3931374 10 chr1 9244439 9244440 + 5949553 11 chr1 9244439 9244440 + 9240977 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=12, step=1) Expected index RangeIndex(start=0, stop=12, step=1) index equal [ True True True True True True True True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp47ew1ya4/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp47ew1ya4/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 630226 630227 + 626764 1 chr1 630226 630227 + 628678 2 chr1 2104866 2104867 + 2101404 3 chr1 2104866 2104867 + 2103318 4 chr1 2104866 2104867 + 2101404 5 chr1 2104866 2104867 + 2103318 6 chr1 2283357 2283358 + 2279895 7 chr1 2283357 2283358 + 2281809 8 chr1 3934836 3934837 + 3931374 9 chr1 3934836 3934837 + 3933288 10 chr1 9244439 9244440 + 9240977 11 chr1 9244439 9244440 + 9242891 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 2283357 | 2283358 | a | 0 | ... | | chr1 | 2283357 | 2283358 | a | 0 | ... | | chr1 | 630226 | 630227 | a | 0 | ... | | chr1 | 630226 | 630227 | a | 0 | ... | | ... | ... | ... | ... | ... | ... | | chr1 | 2104866 | 2104867 | a | 0 | ... | | chr1 | 2104866 | 2104867 | a | 0 | ... | | chr1 | 3934836 | 3934837 | a | 0 | ... | | chr1 | 3934836 | 3934837 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 12 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 2 chr1 630226 630227 + 626764 3 chr1 630226 630227 + 628678 4 chr1 2104866 2104867 + 2101404 8 chr1 2104866 2104867 + 2101404 5 chr1 2104866 2104867 + 2103318 9 chr1 2104866 2104867 + 2103318 0 chr1 2283357 2283358 + 2279895 1 chr1 2283357 2283358 + 2281809 10 chr1 3934836 3934837 + 3931374 11 chr1 3934836 3934837 + 3933288 6 chr1 9244439 9244440 + 9240977 7 chr1 9244439 9244440 + 9242891 df2 Chromosome Start End Strand Distance 0 chr1 630226 630227 + 626764 1 chr1 630226 630227 + 628678 2 chr1 2104866 2104867 + 2101404 4 chr1 2104866 2104867 + 2101404 3 chr1 2104866 2104867 + 2103318 5 chr1 2104866 2104867 + 2103318 6 chr1 2283357 2283358 + 2279895 7 chr1 2283357 2283358 + 2281809 8 chr1 3934836 3934837 + 3931374 9 chr1 3934836 3934837 + 3933288 10 chr1 9244439 9244440 + 9240977 11 chr1 9244439 9244440 + 9242891 Actual Chromosome Start End Strand Distance 0 chr1 630226 630227 + 626764 1 chr1 630226 630227 + 628678 2 chr1 2104866 2104867 + 2101404 3 chr1 2104866 2104867 + 2101404 4 chr1 2104866 2104867 + 2103318 5 chr1 2104866 2104867 + 2103318 6 chr1 2283357 2283358 + 2279895 7 chr1 2283357 2283358 + 2281809 8 chr1 3934836 3934837 + 3931374 9 chr1 3934836 3934837 + 3933288 10 chr1 9244439 9244440 + 9240977 11 chr1 9244439 9244440 + 9242891 Expected Chromosome Start End Strand Distance 0 chr1 630226 630227 + 626764 1 chr1 630226 630227 + 628678 2 chr1 2104866 2104867 + 2101404 3 chr1 2104866 2104867 + 2101404 4 chr1 2104866 2104867 + 2103318 5 chr1 2104866 2104867 + 2103318 6 chr1 2283357 2283358 + 2279895 7 chr1 2283357 2283358 + 2281809 8 chr1 3934836 3934837 + 3931374 9 chr1 3934836 3934837 + 3933288 10 chr1 9244439 9244440 + 9240977 11 chr1 9244439 9244440 + 9242891 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=12, step=1) Expected index RangeIndex(start=0, stop=12, step=1) index equal [ True True True True True True True True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp_gefmwfn/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp_gefmwfn/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 630226 633248 + 626764 1 chr1 630226 633248 + 628678 2 chr1 2104866 2107888 + 2101404 3 chr1 2104866 2107888 + 2103318 4 chr1 2104866 2107888 + 2101404 5 chr1 2104866 2107888 + 2103318 6 chr1 2283357 2286379 + 2279895 7 chr1 2283357 2286379 + 2281809 8 chr1 3934836 3937858 + 3931374 9 chr1 3934836 3937858 + 3933288 10 chr1 9244439 9247461 + 9240977 11 chr1 9244439 9247461 + 9242891 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 2283357 | 2286379 | a | 0 | ... | | chr1 | 2283357 | 2286379 | a | 0 | ... | | chr1 | 630226 | 633248 | a | 0 | ... | | chr1 | 630226 | 633248 | a | 0 | ... | | ... | ... | ... | ... | ... | ... | | chr1 | 2104866 | 2107888 | a | 0 | ... | | chr1 | 2104866 | 2107888 | a | 0 | ... | | chr1 | 3934836 | 3937858 | a | 0 | ... | | chr1 | 3934836 | 3937858 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 12 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 2 chr1 630226 633248 + 626764 3 chr1 630226 633248 + 628678 4 chr1 2104866 2107888 + 2101404 8 chr1 2104866 2107888 + 2101404 5 chr1 2104866 2107888 + 2103318 9 chr1 2104866 2107888 + 2103318 0 chr1 2283357 2286379 + 2279895 1 chr1 2283357 2286379 + 2281809 10 chr1 3934836 3937858 + 3931374 11 chr1 3934836 3937858 + 3933288 6 chr1 9244439 9247461 + 9240977 7 chr1 9244439 9247461 + 9242891 df2 Chromosome Start End Strand Distance 0 chr1 630226 633248 + 626764 1 chr1 630226 633248 + 628678 2 chr1 2104866 2107888 + 2101404 4 chr1 2104866 2107888 + 2101404 3 chr1 2104866 2107888 + 2103318 5 chr1 2104866 2107888 + 2103318 6 chr1 2283357 2286379 + 2279895 7 chr1 2283357 2286379 + 2281809 8 chr1 3934836 3937858 + 3931374 9 chr1 3934836 3937858 + 3933288 10 chr1 9244439 9247461 + 9240977 11 chr1 9244439 9247461 + 9242891 Actual Chromosome Start End Strand Distance 0 chr1 630226 633248 + 626764 1 chr1 630226 633248 + 628678 2 chr1 2104866 2107888 + 2101404 3 chr1 2104866 2107888 + 2101404 4 chr1 2104866 2107888 + 2103318 5 chr1 2104866 2107888 + 2103318 6 chr1 2283357 2286379 + 2279895 7 chr1 2283357 2286379 + 2281809 8 chr1 3934836 3937858 + 3931374 9 chr1 3934836 3937858 + 3933288 10 chr1 9244439 9247461 + 9240977 11 chr1 9244439 9247461 + 9242891 Expected Chromosome Start End Strand Distance 0 chr1 630226 633248 + 626764 1 chr1 630226 633248 + 628678 2 chr1 2104866 2107888 + 2101404 3 chr1 2104866 2107888 + 2101404 4 chr1 2104866 2107888 + 2103318 5 chr1 2104866 2107888 + 2103318 6 chr1 2283357 2286379 + 2279895 7 chr1 2283357 2286379 + 2281809 8 chr1 3934836 3937858 + 3931374 9 chr1 3934836 3937858 + 3933288 10 chr1 9244439 9247461 + 9240977 11 chr1 9244439 9247461 + 9242891 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=12, step=1) Expected index RangeIndex(start=0, stop=12, step=1) index equal [ True True True True True True True True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp8low6vnk/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp8low6vnk/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpksrwu1s9/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpksrwu1s9/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpip05o46z/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpip05o46z/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmph67y8l1n/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmph67y8l1n/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 4162500 4164302 - 593271 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 4162500 | 4164302 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 4162500 4164302 - 593271 df2 Chromosome Start End Strand Distance 0 chr1 4162500 4164302 - 593271 Actual Chromosome Start End Strand Distance 0 chr1 4162500 4164302 - 593271 Expected Chromosome Start End Strand Distance 0 chr1 4162500 4164302 - 593271 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=1, step=1) Expected index RangeIndex(start=0, stop=1, step=1) index equal [ True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmptf3b5lm2/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmptf3b5lm2/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 4162500 4164302 - 593271 1 chr1 4162500 4164302 - 979624 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 4162500 | 4164302 | a | 0 | ... | | chr1 | 4162500 | 4164302 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 4162500 4164302 - 593271 1 chr1 4162500 4164302 - 979624 df2 Chromosome Start End Strand Distance 0 chr1 4162500 4164302 - 593271 1 chr1 4162500 4164302 - 979624 Actual Chromosome Start End Strand Distance 0 chr1 4162500 4164302 - 593271 1 chr1 4162500 4164302 - 979624 Expected Chromosome Start End Strand Distance 0 chr1 4162500 4164302 - 593271 1 chr1 4162500 4164302 - 979624 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=2, step=1) Expected index RangeIndex(start=0, stop=2, step=1) index equal [ True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp3irctzos/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp3irctzos/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpkf2xpnli/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpkf2xpnli/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmphttmizt8/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmphttmizt8/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp3ppmstof/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp3ppmstof/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp_316iiqe/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp_316iiqe/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpufi8q9ru/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpufi8q9ru/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 4298629 4302937 - 2251959 1 chr1 4298629 4302937 - 2579059 2 chr1 7730122 7740037 - 847922 3 chr1 7730122 7740037 - 1173634 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 7730122 | 7740037 | a | 0 | ... | | chr1 | 7730122 | 7740037 | a | 0 | ... | | chr1 | 4298629 | 4302937 | a | 0 | ... | | chr1 | 4298629 | 4302937 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 4 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 2 chr1 4298629 4302937 - 2251959 3 chr1 4298629 4302937 - 2579059 0 chr1 7730122 7740037 - 847922 1 chr1 7730122 7740037 - 1173634 df2 Chromosome Start End Strand Distance 0 chr1 4298629 4302937 - 2251959 1 chr1 4298629 4302937 - 2579059 2 chr1 7730122 7740037 - 847922 3 chr1 7730122 7740037 - 1173634 Actual Chromosome Start End Strand Distance 0 chr1 4298629 4302937 - 2251959 1 chr1 4298629 4302937 - 2579059 2 chr1 7730122 7740037 - 847922 3 chr1 7730122 7740037 - 1173634 Expected Chromosome Start End Strand Distance 0 chr1 4298629 4302937 - 2251959 1 chr1 4298629 4302937 - 2579059 2 chr1 7730122 7740037 - 847922 3 chr1 7730122 7740037 - 1173634 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=4, step=1) Expected index RangeIndex(start=0, stop=4, step=1) index equal [ True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp8qtdl9zh/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp8qtdl9zh/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 4298629 4302937 + 4298628 1 chr1 7730122 7740037 + 7730121 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 7730122 | 7740037 | a | 0 | ... | | chr1 | 4298629 | 4302937 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 1 chr1 4298629 4302937 + 4298628 0 chr1 7730122 7740037 + 7730121 df2 Chromosome Start End Strand Distance 0 chr1 4298629 4302937 + 4298628 1 chr1 7730122 7740037 + 7730121 Actual Chromosome Start End Strand Distance 0 chr1 4298629 4302937 + 4298628 1 chr1 7730122 7740037 + 7730121 Expected Chromosome Start End Strand Distance 0 chr1 4298629 4302937 + 4298628 1 chr1 7730122 7740037 + 7730121 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=2, step=1) Expected index RangeIndex(start=0, stop=2, step=1) index equal [ True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpxp064sfn/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpxp064sfn/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 4298629 4302937 + 4298628 1 chr1 7730122 7740037 + 7730121 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 7730122 | 7740037 | a | 0 | ... | | chr1 | 4298629 | 4302937 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 1 chr1 4298629 4302937 + 4298628 0 chr1 7730122 7740037 + 7730121 df2 Chromosome Start End Strand Distance 0 chr1 4298629 4302937 + 4298628 1 chr1 7730122 7740037 + 7730121 Actual Chromosome Start End Strand Distance 0 chr1 4298629 4302937 + 4298628 1 chr1 7730122 7740037 + 7730121 Expected Chromosome Start End Strand Distance 0 chr1 4298629 4302937 + 4298628 1 chr1 7730122 7740037 + 7730121 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=2, step=1) Expected index RangeIndex(start=0, stop=2, step=1) index equal [ True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpkyinwdlr/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpkyinwdlr/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpdqzbhfjp/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpdqzbhfjp/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmps4mlzpmh/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmps4mlzpmh/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpv4qw86f0/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpv4qw86f0/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 1 4606 + 771030 1 chr1 1 4606 + 3907951 2 chr1 3011237 3012918 + 899639 3 chr1 3011237 3012918 + 2052837 4 chr1 3896400 3903088 + 9469 5 chr1 3896400 3903088 + 1162667 6 chr1 7965808 7974078 - 2025923 7 chr1 7965808 7974078 - 4052834 8 chr1 7967900 7973315 - 2026686 9 chr1 7967900 7973315 - 4054926 10 chr1 8234092 8242526 + 3167920 11 chr1 8234092 8242526 + 4321118 12 chr1 8792945 8798360 - 1201641 13 chr1 8792945 8798360 - 4879971 15 chr3 8458033 8462094 - 459641 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 8234092 | 8242526 | a | 0 | ... | | chr1 | 8234092 | 8242526 | a | 0 | ... | | chr1 | 1 | 4606 | a | 0 | ... | | chr1 | 1 | 4606 | a | 0 | ... | | ... | ... | ... | ... | ... | ... | | chr1 | 7965808 | 7974078 | a | 0 | ... | | chr1 | 7965808 | 7974078 | a | 0 | ... | | chr1 | 8792945 | 8798360 | a | 0 | ... | | chr1 | 8792945 | 8798360 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 15 rows and 12 columns from 2 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 2 chr1 1 4606 + 771030 3 chr1 1 4606 + 3907951 6 chr1 3011237 3012918 + 899639 7 chr1 3011237 3012918 + 2052837 4 chr1 3896400 3903088 + 9469 5 chr1 3896400 3903088 + 1162667 10 chr1 7965808 7974078 - 2025923 11 chr1 7965808 7974078 - 4052834 8 chr1 7967900 7973315 - 2026686 9 chr1 7967900 7973315 - 4054926 0 chr1 8234092 8242526 + 3167920 1 chr1 8234092 8242526 + 4321118 14 chr3 8458033 8462094 - 459641 12 chr1 8792945 8798360 - 1201641 13 chr1 8792945 8798360 - 4879971 df2 Chromosome Start End Strand Distance 0 chr1 1 4606 + 771030 1 chr1 1 4606 + 3907951 2 chr1 3011237 3012918 + 899639 3 chr1 3011237 3012918 + 2052837 4 chr1 3896400 3903088 + 9469 5 chr1 3896400 3903088 + 1162667 6 chr1 7965808 7974078 - 2025923 7 chr1 7965808 7974078 - 4052834 8 chr1 7967900 7973315 - 2026686 9 chr1 7967900 7973315 - 4054926 10 chr1 8234092 8242526 + 3167920 11 chr1 8234092 8242526 + 4321118 15 chr3 8458033 8462094 - 459641 12 chr1 8792945 8798360 - 1201641 13 chr1 8792945 8798360 - 4879971 Actual Chromosome Start End Strand Distance 0 chr1 1 4606 + 771030 1 chr1 1 4606 + 3907951 2 chr1 3011237 3012918 + 899639 3 chr1 3011237 3012918 + 2052837 4 chr1 3896400 3903088 + 9469 5 chr1 3896400 3903088 + 1162667 6 chr1 7965808 7974078 - 2025923 7 chr1 7965808 7974078 - 4052834 8 chr1 7967900 7973315 - 2026686 9 chr1 7967900 7973315 - 4054926 10 chr1 8234092 8242526 + 3167920 11 chr1 8234092 8242526 + 4321118 12 chr1 8792945 8798360 - 1201641 13 chr1 8792945 8798360 - 4879971 14 chr3 8458033 8462094 - 459641 Expected Chromosome Start End Strand Distance 0 chr1 1 4606 + 771030 1 chr1 1 4606 + 3907951 2 chr1 3011237 3012918 + 899639 3 chr1 3011237 3012918 + 2052837 4 chr1 3896400 3903088 + 9469 5 chr1 3896400 3903088 + 1162667 6 chr1 7965808 7974078 - 2025923 7 chr1 7965808 7974078 - 4052834 8 chr1 7967900 7973315 - 2026686 9 chr1 7967900 7973315 - 4054926 10 chr1 8234092 8242526 + 3167920 11 chr1 8234092 8242526 + 4321118 12 chr1 8792945 8798360 - 1201641 13 chr1 8792945 8798360 - 4879971 14 chr3 8458033 8462094 - 459641 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=15, step=1) Expected index RangeIndex(start=0, stop=15, step=1) index equal [ True True True True True True True True True True True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmprtidj65u/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmprtidj65u/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 1 4606 + 7961203 1 chr1 1 4606 + 7963295 2 chr1 3011237 3012918 + 4952891 3 chr1 3011237 3012918 + 4954983 4 chr1 3896400 3903088 + 4062721 5 chr1 3896400 3903088 + 4064813 6 chr1 7965808 7974078 - 260015 7 chr1 7965808 7974078 - 4062721 8 chr1 7967900 7973315 - 260778 9 chr1 7967900 7973315 - 4064813 10 chr1 8234092 8242526 + 260015 11 chr1 8234092 8242526 + 260778 12 chr1 8792945 8798360 - 550420 13 chr1 8792945 8798360 - 4889858 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 8234092 | 8242526 | a | 0 | ... | | chr1 | 8234092 | 8242526 | a | 0 | ... | | chr1 | 1 | 4606 | a | 0 | ... | | chr1 | 1 | 4606 | a | 0 | ... | | ... | ... | ... | ... | ... | ... | | chr1 | 7965808 | 7974078 | a | 0 | ... | | chr1 | 7965808 | 7974078 | a | 0 | ... | | chr1 | 8792945 | 8798360 | a | 0 | ... | | chr1 | 8792945 | 8798360 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 14 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 2 chr1 1 4606 + 7961203 3 chr1 1 4606 + 7963295 6 chr1 3011237 3012918 + 4952891 7 chr1 3011237 3012918 + 4954983 4 chr1 3896400 3903088 + 4062721 5 chr1 3896400 3903088 + 4064813 10 chr1 7965808 7974078 - 260015 11 chr1 7965808 7974078 - 4062721 8 chr1 7967900 7973315 - 260778 9 chr1 7967900 7973315 - 4064813 0 chr1 8234092 8242526 + 260015 1 chr1 8234092 8242526 + 260778 12 chr1 8792945 8798360 - 550420 13 chr1 8792945 8798360 - 4889858 df2 Chromosome Start End Strand Distance 0 chr1 1 4606 + 7961203 1 chr1 1 4606 + 7963295 2 chr1 3011237 3012918 + 4952891 3 chr1 3011237 3012918 + 4954983 4 chr1 3896400 3903088 + 4062721 5 chr1 3896400 3903088 + 4064813 6 chr1 7965808 7974078 - 260015 7 chr1 7965808 7974078 - 4062721 8 chr1 7967900 7973315 - 260778 9 chr1 7967900 7973315 - 4064813 10 chr1 8234092 8242526 + 260015 11 chr1 8234092 8242526 + 260778 12 chr1 8792945 8798360 - 550420 13 chr1 8792945 8798360 - 4889858 Actual Chromosome Start End Strand Distance 0 chr1 1 4606 + 7961203 1 chr1 1 4606 + 7963295 2 chr1 3011237 3012918 + 4952891 3 chr1 3011237 3012918 + 4954983 4 chr1 3896400 3903088 + 4062721 5 chr1 3896400 3903088 + 4064813 6 chr1 7965808 7974078 - 260015 7 chr1 7965808 7974078 - 4062721 8 chr1 7967900 7973315 - 260778 9 chr1 7967900 7973315 - 4064813 10 chr1 8234092 8242526 + 260015 11 chr1 8234092 8242526 + 260778 12 chr1 8792945 8798360 - 550420 13 chr1 8792945 8798360 - 4889858 Expected Chromosome Start End Strand Distance 0 chr1 1 4606 + 7961203 1 chr1 1 4606 + 7963295 2 chr1 3011237 3012918 + 4952891 3 chr1 3011237 3012918 + 4954983 4 chr1 3896400 3903088 + 4062721 5 chr1 3896400 3903088 + 4064813 6 chr1 7965808 7974078 - 260015 7 chr1 7965808 7974078 - 4062721 8 chr1 7967900 7973315 - 260778 9 chr1 7967900 7973315 - 4064813 10 chr1 8234092 8242526 + 260015 11 chr1 8234092 8242526 + 260778 12 chr1 8792945 8798360 - 550420 13 chr1 8792945 8798360 - 4889858 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=14, step=1) Expected index RangeIndex(start=0, stop=14, step=1) index equal [ True True True True True True True True True True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp6n80vdof/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp6n80vdof/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 1 4606 + 3006632 1 chr1 1 4606 + 8788340 2 chr1 3011237 3012918 + 3011236 3 chr1 3011237 3012918 + 5780028 4 chr1 3896400 3903088 + 885163 5 chr1 3896400 3903088 + 3896399 8 chr1 8234092 8242526 + 550420 9 chr1 8234092 8242526 + 5222855 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 8234092 | 8242526 | a | 0 | ... | | chr1 | 8234092 | 8242526 | a | 0 | ... | | chr1 | 1 | 4606 | a | 0 | ... | | chr1 | 1 | 4606 | a | 0 | ... | | chr1 | 3896400 | 3903088 | a | 0 | ... | | chr1 | 3896400 | 3903088 | a | 0 | ... | | chr1 | 3011237 | 3012918 | a | 0 | ... | | chr1 | 3011237 | 3012918 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 8 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 2 chr1 1 4606 + 3006632 3 chr1 1 4606 + 8788340 6 chr1 3011237 3012918 + 3011236 7 chr1 3011237 3012918 + 5780028 4 chr1 3896400 3903088 + 885163 5 chr1 3896400 3903088 + 3896399 0 chr1 8234092 8242526 + 550420 1 chr1 8234092 8242526 + 5222855 df2 Chromosome Start End Strand Distance 0 chr1 1 4606 + 3006632 1 chr1 1 4606 + 8788340 2 chr1 3011237 3012918 + 3011236 3 chr1 3011237 3012918 + 5780028 4 chr1 3896400 3903088 + 885163 5 chr1 3896400 3903088 + 3896399 8 chr1 8234092 8242526 + 550420 9 chr1 8234092 8242526 + 5222855 Actual Chromosome Start End Strand Distance 0 chr1 1 4606 + 3006632 1 chr1 1 4606 + 8788340 2 chr1 3011237 3012918 + 3011236 3 chr1 3011237 3012918 + 5780028 4 chr1 3896400 3903088 + 885163 5 chr1 3896400 3903088 + 3896399 6 chr1 8234092 8242526 + 550420 7 chr1 8234092 8242526 + 5222855 Expected Chromosome Start End Strand Distance 0 chr1 1 4606 + 3006632 1 chr1 1 4606 + 8788340 2 chr1 3011237 3012918 + 3011236 3 chr1 3011237 3012918 + 5780028 4 chr1 3896400 3903088 + 885163 5 chr1 3896400 3903088 + 3896399 6 chr1 8234092 8242526 + 550420 7 chr1 8234092 8242526 + 5222855 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=8, step=1) Expected index RangeIndex(start=0, stop=8, step=1) index equal [ True True True True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpu9jn_9na/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpu9jn_9na/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmplpj8jtk1/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmplpj8jtk1/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmph6epcmo_/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmph6epcmo_/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpqpf38lg_/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpqpf38lg_/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpzzupsas1/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpzzupsas1/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 366702 369309 + 2525064 1 chr1 366702 369309 + 3938226 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 366702 | 369309 | a | 0 | ... | | chr1 | 366702 | 369309 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 366702 369309 + 2525064 1 chr1 366702 369309 + 3938226 df2 Chromosome Start End Strand Distance 0 chr1 366702 369309 + 2525064 1 chr1 366702 369309 + 3938226 Actual Chromosome Start End Strand Distance 0 chr1 366702 369309 + 2525064 1 chr1 366702 369309 + 3938226 Expected Chromosome Start End Strand Distance 0 chr1 366702 369309 + 2525064 1 chr1 366702 369309 + 3938226 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=2, step=1) Expected index RangeIndex(start=0, stop=2, step=1) index equal [ True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmptpaxqe7k/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmptpaxqe7k/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpexxqccn8/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpexxqccn8/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 8 chr2 2426759 2436422 + 2426758 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr2 | 2426759 | 2436422 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr2 2426759 2436422 + 2426758 df2 Chromosome Start End Strand Distance 8 chr2 2426759 2436422 + 2426758 Actual Chromosome Start End Strand Distance 0 chr2 2426759 2436422 + 2426758 Expected Chromosome Start End Strand Distance 0 chr2 2426759 2436422 + 2426758 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=1, step=1) Expected index RangeIndex(start=0, stop=1, step=1) index equal [ True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp3vc_0axe/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp3vc_0axe/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpsd7yelgs/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpsd7yelgs/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp12zrm9qt/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp12zrm9qt/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 1 2 - 1 1 chr1 1 2 - 1 2 chr1 1 2 - 1 3 chr1 1 2 - 1 4 chr1 1 2 - 1 5 chr1 1 2 - 1 6 chr1 1 2 - 1 7 chr1 1 2 - 1 8 chr1 1 2 - 1 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 1 | 2 | a | 0 | ... | | chr1 | 1 | 2 | a | 0 | ... | | chr1 | 1 | 2 | a | 0 | ... | | chr1 | 1 | 2 | a | 0 | ... | | ... | ... | ... | ... | ... | ... | | chr1 | 1 | 2 | a | 0 | ... | | chr1 | 1 | 2 | a | 0 | ... | | chr1 | 1 | 2 | a | 0 | ... | | chr1 | 1 | 2 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 9 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 1 2 - 1 1 chr1 1 2 - 1 2 chr1 1 2 - 1 3 chr1 1 2 - 1 4 chr1 1 2 - 1 5 chr1 1 2 - 1 6 chr1 1 2 - 1 7 chr1 1 2 - 1 8 chr1 1 2 - 1 df2 Chromosome Start End Strand Distance 0 chr1 1 2 - 1 1 chr1 1 2 - 1 2 chr1 1 2 - 1 3 chr1 1 2 - 1 4 chr1 1 2 - 1 5 chr1 1 2 - 1 6 chr1 1 2 - 1 7 chr1 1 2 - 1 8 chr1 1 2 - 1 Actual Chromosome Start End Strand Distance 0 chr1 1 2 - 1 1 chr1 1 2 - 1 2 chr1 1 2 - 1 3 chr1 1 2 - 1 4 chr1 1 2 - 1 5 chr1 1 2 - 1 6 chr1 1 2 - 1 7 chr1 1 2 - 1 8 chr1 1 2 - 1 Expected Chromosome Start End Strand Distance 0 chr1 1 2 - 1 1 chr1 1 2 - 1 2 chr1 1 2 - 1 3 chr1 1 2 - 1 4 chr1 1 2 - 1 5 chr1 1 2 - 1 6 chr1 1 2 - 1 7 chr1 1 2 - 1 8 chr1 1 2 - 1 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=9, step=1) Expected index RangeIndex(start=0, stop=9, step=1) index equal [ True True True True True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp4i24j2ba/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp4i24j2ba/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 1 2 - 1 1 chr1 1 2 - 1 2 chr1 1 2 - 1 3 chr1 1 2 - 1 4 chr1 1 2 - 1 5 chr1 1 2 - 1 6 chr1 1 2 - 1 7 chr1 1 2 - 1 8 chr1 1 2 - 1 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 1 | 2 | a | 0 | ... | | chr1 | 1 | 2 | a | 0 | ... | | chr1 | 1 | 2 | a | 0 | ... | | chr1 | 1 | 2 | a | 0 | ... | | ... | ... | ... | ... | ... | ... | | chr1 | 1 | 2 | a | 0 | ... | | chr1 | 1 | 2 | a | 0 | ... | | chr1 | 1 | 2 | a | 0 | ... | | chr1 | 1 | 2 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 9 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 1 2 - 1 1 chr1 1 2 - 1 2 chr1 1 2 - 1 3 chr1 1 2 - 1 4 chr1 1 2 - 1 5 chr1 1 2 - 1 6 chr1 1 2 - 1 7 chr1 1 2 - 1 8 chr1 1 2 - 1 df2 Chromosome Start End Strand Distance 0 chr1 1 2 - 1 1 chr1 1 2 - 1 2 chr1 1 2 - 1 3 chr1 1 2 - 1 4 chr1 1 2 - 1 5 chr1 1 2 - 1 6 chr1 1 2 - 1 7 chr1 1 2 - 1 8 chr1 1 2 - 1 Actual Chromosome Start End Strand Distance 0 chr1 1 2 - 1 1 chr1 1 2 - 1 2 chr1 1 2 - 1 3 chr1 1 2 - 1 4 chr1 1 2 - 1 5 chr1 1 2 - 1 6 chr1 1 2 - 1 7 chr1 1 2 - 1 8 chr1 1 2 - 1 Expected Chromosome Start End Strand Distance 0 chr1 1 2 - 1 1 chr1 1 2 - 1 2 chr1 1 2 - 1 3 chr1 1 2 - 1 4 chr1 1 2 - 1 5 chr1 1 2 - 1 6 chr1 1 2 - 1 7 chr1 1 2 - 1 8 chr1 1 2 - 1 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=9, step=1) Expected index RangeIndex(start=0, stop=9, step=1) index equal [ True True True True True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpoliivkf2/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpoliivkf2/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpco4w9cum/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpco4w9cum/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpyk7dxh9y/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpyk7dxh9y/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr10 714337 723984 + 5620464 1 chr10 714337 723984 + 5783522 2 chr10 3140421 3142752 + 3201696 3 chr10 3140421 3142752 + 3364754 4 chr10 6344447 6346497 - 1031038 5 chr10 6344447 6346497 - 3201696 6 chr10 6507505 6515233 - 862302 7 chr10 6507505 6515233 - 3128893 8 chr10 7377534 7387514 + 239347 9 chr10 7377534 7387514 + 862302 10 chr10 7626860 7631996 - 239347 11 chr10 7626860 7631996 - 2012130 12 chr10 9644125 9653772 + 2012130 13 chr10 9644125 9653772 + 3128893 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr10 | 9644125 | 9653772 | a | 0 | ... | | chr10 | 9644125 | 9653772 | a | 0 | ... | | chr10 | 3140421 | 3142752 | a | 0 | ... | | chr10 | 3140421 | 3142752 | a | 0 | ... | | ... | ... | ... | ... | ... | ... | | chr10 | 6507505 | 6515233 | a | 0 | ... | | chr10 | 6507505 | 6515233 | a | 0 | ... | | chr10 | 7626860 | 7631996 | a | 0 | ... | | chr10 | 7626860 | 7631996 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 14 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 4 chr10 714337 723984 + 5620464 5 chr10 714337 723984 + 5783522 2 chr10 3140421 3142752 + 3201696 3 chr10 3140421 3142752 + 3364754 8 chr10 6344447 6346497 - 1031038 9 chr10 6344447 6346497 - 3201696 10 chr10 6507505 6515233 - 862302 11 chr10 6507505 6515233 - 3128893 6 chr10 7377534 7387514 + 239347 7 chr10 7377534 7387514 + 862302 12 chr10 7626860 7631996 - 239347 13 chr10 7626860 7631996 - 2012130 0 chr10 9644125 9653772 + 2012130 1 chr10 9644125 9653772 + 3128893 df2 Chromosome Start End Strand Distance 0 chr10 714337 723984 + 5620464 1 chr10 714337 723984 + 5783522 2 chr10 3140421 3142752 + 3201696 3 chr10 3140421 3142752 + 3364754 4 chr10 6344447 6346497 - 1031038 5 chr10 6344447 6346497 - 3201696 6 chr10 6507505 6515233 - 862302 7 chr10 6507505 6515233 - 3128893 8 chr10 7377534 7387514 + 239347 9 chr10 7377534 7387514 + 862302 10 chr10 7626860 7631996 - 239347 11 chr10 7626860 7631996 - 2012130 12 chr10 9644125 9653772 + 2012130 13 chr10 9644125 9653772 + 3128893 Actual Chromosome Start End Strand Distance 0 chr10 714337 723984 + 5620464 1 chr10 714337 723984 + 5783522 2 chr10 3140421 3142752 + 3201696 3 chr10 3140421 3142752 + 3364754 4 chr10 6344447 6346497 - 1031038 5 chr10 6344447 6346497 - 3201696 6 chr10 6507505 6515233 - 862302 7 chr10 6507505 6515233 - 3128893 8 chr10 7377534 7387514 + 239347 9 chr10 7377534 7387514 + 862302 10 chr10 7626860 7631996 - 239347 11 chr10 7626860 7631996 - 2012130 12 chr10 9644125 9653772 + 2012130 13 chr10 9644125 9653772 + 3128893 Expected Chromosome Start End Strand Distance 0 chr10 714337 723984 + 5620464 1 chr10 714337 723984 + 5783522 2 chr10 3140421 3142752 + 3201696 3 chr10 3140421 3142752 + 3364754 4 chr10 6344447 6346497 - 1031038 5 chr10 6344447 6346497 - 3201696 6 chr10 6507505 6515233 - 862302 7 chr10 6507505 6515233 - 3128893 8 chr10 7377534 7387514 + 239347 9 chr10 7377534 7387514 + 862302 10 chr10 7626860 7631996 - 239347 11 chr10 7626860 7631996 - 2012130 12 chr10 9644125 9653772 + 2012130 13 chr10 9644125 9653772 + 3128893 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=14, step=1) Expected index RangeIndex(start=0, stop=14, step=1) index equal [ True True True True True True True True True True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp2v432_tx/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp2v432_tx/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr10 714337 723984 + 5620464 1 chr10 714337 723984 + 5783522 2 chr10 3140421 3142752 + 3201696 3 chr10 3140421 3142752 + 3364754 4 chr10 6344447 6346497 - 1031038 5 chr10 6344447 6346497 - 3201696 6 chr10 6507505 6515233 - 862302 7 chr10 6507505 6515233 - 3128893 8 chr10 7377534 7387514 + 239347 9 chr10 7377534 7387514 + 870029 10 chr10 7626860 7631996 - 239347 11 chr10 7626860 7631996 - 2012130 12 chr10 9644125 9653772 + 2012130 13 chr10 9644125 9653772 + 3136620 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr10 | 9644125 | 9653772 | a | 0 | ... | | chr10 | 9644125 | 9653772 | a | 0 | ... | | chr10 | 3140421 | 3142752 | a | 0 | ... | | chr10 | 3140421 | 3142752 | a | 0 | ... | | ... | ... | ... | ... | ... | ... | | chr10 | 6507505 | 6515233 | a | 0 | ... | | chr10 | 6507505 | 6515233 | a | 0 | ... | | chr10 | 7626860 | 7631996 | a | 0 | ... | | chr10 | 7626860 | 7631996 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 14 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 4 chr10 714337 723984 + 5620464 5 chr10 714337 723984 + 5783522 2 chr10 3140421 3142752 + 3201696 3 chr10 3140421 3142752 + 3364754 8 chr10 6344447 6346497 - 1031038 9 chr10 6344447 6346497 - 3201696 10 chr10 6507505 6515233 - 862302 11 chr10 6507505 6515233 - 3128893 6 chr10 7377534 7387514 + 239347 7 chr10 7377534 7387514 + 870029 12 chr10 7626860 7631996 - 239347 13 chr10 7626860 7631996 - 2012130 0 chr10 9644125 9653772 + 2012130 1 chr10 9644125 9653772 + 3136620 df2 Chromosome Start End Strand Distance 0 chr10 714337 723984 + 5620464 1 chr10 714337 723984 + 5783522 2 chr10 3140421 3142752 + 3201696 3 chr10 3140421 3142752 + 3364754 4 chr10 6344447 6346497 - 1031038 5 chr10 6344447 6346497 - 3201696 6 chr10 6507505 6515233 - 862302 7 chr10 6507505 6515233 - 3128893 8 chr10 7377534 7387514 + 239347 9 chr10 7377534 7387514 + 870029 10 chr10 7626860 7631996 - 239347 11 chr10 7626860 7631996 - 2012130 12 chr10 9644125 9653772 + 2012130 13 chr10 9644125 9653772 + 3136620 Actual Chromosome Start End Strand Distance 0 chr10 714337 723984 + 5620464 1 chr10 714337 723984 + 5783522 2 chr10 3140421 3142752 + 3201696 3 chr10 3140421 3142752 + 3364754 4 chr10 6344447 6346497 - 1031038 5 chr10 6344447 6346497 - 3201696 6 chr10 6507505 6515233 - 862302 7 chr10 6507505 6515233 - 3128893 8 chr10 7377534 7387514 + 239347 9 chr10 7377534 7387514 + 870029 10 chr10 7626860 7631996 - 239347 11 chr10 7626860 7631996 - 2012130 12 chr10 9644125 9653772 + 2012130 13 chr10 9644125 9653772 + 3136620 Expected Chromosome Start End Strand Distance 0 chr10 714337 723984 + 5620464 1 chr10 714337 723984 + 5783522 2 chr10 3140421 3142752 + 3201696 3 chr10 3140421 3142752 + 3364754 4 chr10 6344447 6346497 - 1031038 5 chr10 6344447 6346497 - 3201696 6 chr10 6507505 6515233 - 862302 7 chr10 6507505 6515233 - 3128893 8 chr10 7377534 7387514 + 239347 9 chr10 7377534 7387514 + 870029 10 chr10 7626860 7631996 - 239347 11 chr10 7626860 7631996 - 2012130 12 chr10 9644125 9653772 + 2012130 13 chr10 9644125 9653772 + 3136620 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=14, step=1) Expected index RangeIndex(start=0, stop=14, step=1) index equal [ True True True True True True True True True True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmppk2w2vzc/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmppk2w2vzc/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp4na1lp4c/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp4na1lp4c/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpx_gs0fpf/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpx_gs0fpf/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpwg84apy9/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpwg84apy9/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 5090602 5093132 - 643349 1 chr1 7991456 7991871 + 1687806 2 chr1 7991456 7994895 - 3544203 3 chr1 8446376 8447070 - 3999123 4 chr1 9872093 9875747 - 5424840 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 7991456 | 7991871 | a | 0 | ... | | chr1 | 9872093 | 9875747 | a | 0 | ... | | chr1 | 5090602 | 5093132 | a | 0 | ... | | chr1 | 8446376 | 8447070 | a | 0 | ... | | chr1 | 7991456 | 7994895 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 5 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 2 chr1 5090602 5093132 - 643349 0 chr1 7991456 7991871 + 1687806 4 chr1 7991456 7994895 - 3544203 3 chr1 8446376 8447070 - 3999123 1 chr1 9872093 9875747 - 5424840 df2 Chromosome Start End Strand Distance 0 chr1 5090602 5093132 - 643349 1 chr1 7991456 7991871 + 1687806 2 chr1 7991456 7994895 - 3544203 3 chr1 8446376 8447070 - 3999123 4 chr1 9872093 9875747 - 5424840 Actual Chromosome Start End Strand Distance 0 chr1 5090602 5093132 - 643349 1 chr1 7991456 7991871 + 1687806 2 chr1 7991456 7994895 - 3544203 3 chr1 8446376 8447070 - 3999123 4 chr1 9872093 9875747 - 5424840 Expected Chromosome Start End Strand Distance 0 chr1 5090602 5093132 - 643349 1 chr1 7991456 7991871 + 1687806 2 chr1 7991456 7994895 - 3544203 3 chr1 8446376 8447070 - 3999123 4 chr1 9872093 9875747 - 5424840 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=5, step=1) Expected index RangeIndex(start=0, stop=5, step=1) index equal [ True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp1sahvobq/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp1sahvobq/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 5090602 5093132 - 2898325 1 chr1 7991456 7991871 + 454506 2 chr1 7991456 7991871 + 1880223 4 chr1 8446376 8447070 - 454506 5 chr1 9872093 9875747 - 1880223 10 chrM 3884205 3890997 + 2232981 11 chrM 6123977 6133976 - 2232981 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 7991456 | 7991871 | a | 0 | ... | | chr1 | 7991456 | 7991871 | a | 0 | ... | | chr1 | 9872093 | 9875747 | a | 0 | ... | | chr1 | 5090602 | 5093132 | a | 0 | ... | | chr1 | 8446376 | 8447070 | a | 0 | ... | | chrM | 3884205 | 3890997 | a | 0 | ... | | chrM | 6123977 | 6133976 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 7 rows and 12 columns from 2 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 5 chrM 3884205 3890997 + 2232981 3 chr1 5090602 5093132 - 2898325 6 chrM 6123977 6133976 - 2232981 0 chr1 7991456 7991871 + 454506 1 chr1 7991456 7991871 + 1880223 4 chr1 8446376 8447070 - 454506 2 chr1 9872093 9875747 - 1880223 df2 Chromosome Start End Strand Distance 10 chrM 3884205 3890997 + 2232981 0 chr1 5090602 5093132 - 2898325 11 chrM 6123977 6133976 - 2232981 1 chr1 7991456 7991871 + 454506 2 chr1 7991456 7991871 + 1880223 4 chr1 8446376 8447070 - 454506 5 chr1 9872093 9875747 - 1880223 Actual Chromosome Start End Strand Distance 0 chr1 5090602 5093132 - 2898325 1 chr1 7991456 7991871 + 454506 2 chr1 7991456 7991871 + 1880223 3 chr1 8446376 8447070 - 454506 4 chr1 9872093 9875747 - 1880223 5 chrM 3884205 3890997 + 2232981 6 chrM 6123977 6133976 - 2232981 Expected Chromosome Start End Strand Distance 0 chr1 5090602 5093132 - 2898325 1 chr1 7991456 7991871 + 454506 2 chr1 7991456 7991871 + 1880223 3 chr1 8446376 8447070 - 454506 4 chr1 9872093 9875747 - 1880223 5 chrM 3884205 3890997 + 2232981 6 chrM 6123977 6133976 - 2232981 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=7, step=1) Expected index RangeIndex(start=0, stop=7, step=1) index equal [ True True True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp1n0aqndi/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp1n0aqndi/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 1 2531 - 7988926 1 chr1 1 3440 - 7988017 2 chr1 1 3655 - 7987802 3 chr1 1 416 + 5090187 4 chr1 1 416 + 7991041 5 chr1 1 695 - 7990762 10 chrM 1 10000 - 3874206 11 chrM 1 6793 + 6117185 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 1 | 416 | a | 0 | ... | | chr1 | 1 | 416 | a | 0 | ... | | chr1 | 1 | 3655 | a | 0 | ... | | chr1 | 1 | 2531 | a | 0 | ... | | chr1 | 1 | 695 | a | 0 | ... | | chr1 | 1 | 3440 | a | 0 | ... | | chrM | 1 | 6793 | a | 0 | ... | | chrM | 1 | 10000 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 8 rows and 12 columns from 2 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 1 416 + 5090187 1 chr1 1 416 + 7991041 4 chr1 1 695 - 7990762 3 chr1 1 2531 - 7988926 5 chr1 1 3440 - 7988017 2 chr1 1 3655 - 7987802 6 chrM 1 6793 + 6117185 7 chrM 1 10000 - 3874206 df2 Chromosome Start End Strand Distance 3 chr1 1 416 + 5090187 4 chr1 1 416 + 7991041 5 chr1 1 695 - 7990762 0 chr1 1 2531 - 7988926 1 chr1 1 3440 - 7988017 2 chr1 1 3655 - 7987802 11 chrM 1 6793 + 6117185 10 chrM 1 10000 - 3874206 Actual Chromosome Start End Strand Distance 0 chr1 1 416 + 5090187 1 chr1 1 416 + 7991041 2 chr1 1 695 - 7990762 3 chr1 1 2531 - 7988926 4 chr1 1 3440 - 7988017 5 chr1 1 3655 - 7987802 6 chrM 1 6793 + 6117185 7 chrM 1 10000 - 3874206 Expected Chromosome Start End Strand Distance 0 chr1 1 416 + 5090187 1 chr1 1 416 + 7991041 2 chr1 1 695 - 7990762 3 chr1 1 2531 - 7988926 4 chr1 1 3440 - 7988017 5 chr1 1 3655 - 7987802 6 chrM 1 6793 + 6117185 7 chrM 1 10000 - 3874206 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=8, step=1) Expected index RangeIndex(start=0, stop=8, step=1) index equal [ True True True True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpmlyh9y41/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpmlyh9y41/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 5090602 5093132 - 2898325 1 chr1 7991456 7991871 + 454506 2 chr1 7991456 7991871 + 1880223 4 chr1 8446376 8447070 - 454506 5 chr1 9872093 9875747 - 1880223 10 chrM 3884205 3890997 + 2232981 11 chrM 6123977 6133976 - 2232981 12 chrM 6123977 6133976 - 3866024 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 7991456 | 7991871 | a | 0 | ... | | chr1 | 7991456 | 7991871 | a | 0 | ... | | chr1 | 9872093 | 9875747 | a | 0 | ... | | chr1 | 5090602 | 5093132 | a | 0 | ... | | chr1 | 8446376 | 8447070 | a | 0 | ... | | chrM | 3884205 | 3890997 | a | 0 | ... | | chrM | 6123977 | 6133976 | a | 0 | ... | | chrM | 6123977 | 6133976 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 8 rows and 12 columns from 2 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 5 chrM 3884205 3890997 + 2232981 3 chr1 5090602 5093132 - 2898325 6 chrM 6123977 6133976 - 2232981 7 chrM 6123977 6133976 - 3866024 0 chr1 7991456 7991871 + 454506 1 chr1 7991456 7991871 + 1880223 4 chr1 8446376 8447070 - 454506 2 chr1 9872093 9875747 - 1880223 df2 Chromosome Start End Strand Distance 10 chrM 3884205 3890997 + 2232981 0 chr1 5090602 5093132 - 2898325 11 chrM 6123977 6133976 - 2232981 12 chrM 6123977 6133976 - 3866024 1 chr1 7991456 7991871 + 454506 2 chr1 7991456 7991871 + 1880223 4 chr1 8446376 8447070 - 454506 5 chr1 9872093 9875747 - 1880223 Actual Chromosome Start End Strand Distance 0 chr1 5090602 5093132 - 2898325 1 chr1 7991456 7991871 + 454506 2 chr1 7991456 7991871 + 1880223 3 chr1 8446376 8447070 - 454506 4 chr1 9872093 9875747 - 1880223 5 chrM 3884205 3890997 + 2232981 6 chrM 6123977 6133976 - 2232981 7 chrM 6123977 6133976 - 3866024 Expected Chromosome Start End Strand Distance 0 chr1 5090602 5093132 - 2898325 1 chr1 7991456 7991871 + 454506 2 chr1 7991456 7991871 + 1880223 3 chr1 8446376 8447070 - 454506 4 chr1 9872093 9875747 - 1880223 5 chrM 3884205 3890997 + 2232981 6 chrM 6123977 6133976 - 2232981 7 chrM 6123977 6133976 - 3866024 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=8, step=1) Expected index RangeIndex(start=0, stop=8, step=1) index equal [ True True True True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmplhqk33v5/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmplhqk33v5/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpqxwbsd9z/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpqxwbsd9z/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpk24pya50/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpk24pya50/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpeepth_ug/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpeepth_ug/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 4955850 4961958 - 696141 1 chr1 4955850 4961958 - 3053548 4 chrM 9341593 9346791 + 4248059 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 4955850 | 4961958 | a | 0 | ... | | chr1 | 4955850 | 4961958 | a | 0 | ... | | chrM | 9341593 | 9346791 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 3 rows and 12 columns from 2 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 4955850 4961958 - 696141 1 chr1 4955850 4961958 - 3053548 2 chrM 9341593 9346791 + 4248059 df2 Chromosome Start End Strand Distance 0 chr1 4955850 4961958 - 696141 1 chr1 4955850 4961958 - 3053548 4 chrM 9341593 9346791 + 4248059 Actual Chromosome Start End Strand Distance 0 chr1 4955850 4961958 - 696141 1 chr1 4955850 4961958 - 3053548 2 chrM 9341593 9346791 + 4248059 Expected Chromosome Start End Strand Distance 0 chr1 4955850 4961958 - 696141 1 chr1 4955850 4961958 - 3053548 2 chrM 9341593 9346791 + 4248059 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=3, step=1) Expected index RangeIndex(start=0, stop=3, step=1) index equal [ True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp12iwljts/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp12iwljts/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 4955850 4961958 - 696141 1 chr1 4955850 4961958 - 3053548 4 chrM 9341593 9346791 + 4248059 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 4955850 | 4961958 | a | 0 | ... | | chr1 | 4955850 | 4961958 | a | 0 | ... | | chrM | 9341593 | 9346791 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 3 rows and 12 columns from 2 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 4955850 4961958 - 696141 1 chr1 4955850 4961958 - 3053548 2 chrM 9341593 9346791 + 4248059 df2 Chromosome Start End Strand Distance 0 chr1 4955850 4961958 - 696141 1 chr1 4955850 4961958 - 3053548 4 chrM 9341593 9346791 + 4248059 Actual Chromosome Start End Strand Distance 0 chr1 4955850 4961958 - 696141 1 chr1 4955850 4961958 - 3053548 2 chrM 9341593 9346791 + 4248059 Expected Chromosome Start End Strand Distance 0 chr1 4955850 4961958 - 696141 1 chr1 4955850 4961958 - 3053548 2 chrM 9341593 9346791 + 4248059 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=3, step=1) Expected index RangeIndex(start=0, stop=3, step=1) index equal [ True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpob9wkjv4/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpob9wkjv4/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 4955850 4961958 - 696141 1 chr1 4955850 4961958 - 3053548 4 chrM 9341593 9346791 + 4248059 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 4955850 | 4961958 | a | 0 | ... | | chr1 | 4955850 | 4961958 | a | 0 | ... | | chrM | 9341593 | 9346791 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 3 rows and 12 columns from 2 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 4955850 4961958 - 696141 1 chr1 4955850 4961958 - 3053548 2 chrM 9341593 9346791 + 4248059 df2 Chromosome Start End Strand Distance 0 chr1 4955850 4961958 - 696141 1 chr1 4955850 4961958 - 3053548 4 chrM 9341593 9346791 + 4248059 Actual Chromosome Start End Strand Distance 0 chr1 4955850 4961958 - 696141 1 chr1 4955850 4961958 - 3053548 2 chrM 9341593 9346791 + 4248059 Expected Chromosome Start End Strand Distance 0 chr1 4955850 4961958 - 696141 1 chr1 4955850 4961958 - 3053548 2 chrM 9341593 9346791 + 4248059 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=3, step=1) Expected index RangeIndex(start=0, stop=3, step=1) index equal [ True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmprycq_keo/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmprycq_keo/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpf_qm25qr/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpf_qm25qr/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpf3jzy1e2/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpf3jzy1e2/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpyedmhwc1/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpyedmhwc1/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpxmf1uecs/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpxmf1uecs/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 2778494 2778496 + 2275327 1 chr1 2778494 2778496 + 3598763 2 chr1 7415951 7418925 + 85375 3 chr1 7415951 7418925 + 878958 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 7415951 | 7418925 | a | 0 | ... | | chr1 | 7415951 | 7418925 | a | 0 | ... | | chr1 | 2778494 | 2778496 | a | 0 | ... | | chr1 | 2778494 | 2778496 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 4 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 2 chr1 2778494 2778496 + 2275327 3 chr1 2778494 2778496 + 3598763 0 chr1 7415951 7418925 + 85375 1 chr1 7415951 7418925 + 878958 df2 Chromosome Start End Strand Distance 0 chr1 2778494 2778496 + 2275327 1 chr1 2778494 2778496 + 3598763 2 chr1 7415951 7418925 + 85375 3 chr1 7415951 7418925 + 878958 Actual Chromosome Start End Strand Distance 0 chr1 2778494 2778496 + 2275327 1 chr1 2778494 2778496 + 3598763 2 chr1 7415951 7418925 + 85375 3 chr1 7415951 7418925 + 878958 Expected Chromosome Start End Strand Distance 0 chr1 2778494 2778496 + 2275327 1 chr1 2778494 2778496 + 3598763 2 chr1 7415951 7418925 + 85375 3 chr1 7415951 7418925 + 878958 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=4, step=1) Expected index RangeIndex(start=0, stop=4, step=1) index equal [ True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp_18aiy26/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp_18aiy26/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 2778494 2778496 + 2275327 1 chr1 2778494 2778496 + 3598763 2 chr1 7415951 7418925 + 878958 3 chr1 7415951 7418925 + 1022276 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 7415951 | 7418925 | a | 0 | ... | | chr1 | 7415951 | 7418925 | a | 0 | ... | | chr1 | 2778494 | 2778496 | a | 0 | ... | | chr1 | 2778494 | 2778496 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 4 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 2 chr1 2778494 2778496 + 2275327 3 chr1 2778494 2778496 + 3598763 0 chr1 7415951 7418925 + 878958 1 chr1 7415951 7418925 + 1022276 df2 Chromosome Start End Strand Distance 0 chr1 2778494 2778496 + 2275327 1 chr1 2778494 2778496 + 3598763 2 chr1 7415951 7418925 + 878958 3 chr1 7415951 7418925 + 1022276 Actual Chromosome Start End Strand Distance 0 chr1 2778494 2778496 + 2275327 1 chr1 2778494 2778496 + 3598763 2 chr1 7415951 7418925 + 878958 3 chr1 7415951 7418925 + 1022276 Expected Chromosome Start End Strand Distance 0 chr1 2778494 2778496 + 2275327 1 chr1 2778494 2778496 + 3598763 2 chr1 7415951 7418925 + 878958 3 chr1 7415951 7418925 + 1022276 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=4, step=1) Expected index RangeIndex(start=0, stop=4, step=1) index equal [ True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpc4xsvr1a/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpc4xsvr1a/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 7415951 7415952 + 7415950 1 chr1 7415951 7415952 + 7415950 2 chr1 7415951 7415952 + 7415950 3 chr1 7415951 7415952 + 7415950 4 chr1 7415951 7415952 + 7415950 5 chr1 7415951 7415952 + 7415950 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 7415951 | 7415952 | a | 0 | ... | | chr1 | 7415951 | 7415952 | a | 0 | ... | | chr1 | 7415951 | 7415952 | a | 0 | ... | | chr1 | 7415951 | 7415952 | a | 0 | ... | | chr1 | 7415951 | 7415952 | a | 0 | ... | | chr1 | 7415951 | 7415952 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 6 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 7415951 7415952 + 7415950 1 chr1 7415951 7415952 + 7415950 2 chr1 7415951 7415952 + 7415950 3 chr1 7415951 7415952 + 7415950 4 chr1 7415951 7415952 + 7415950 5 chr1 7415951 7415952 + 7415950 df2 Chromosome Start End Strand Distance 0 chr1 7415951 7415952 + 7415950 1 chr1 7415951 7415952 + 7415950 2 chr1 7415951 7415952 + 7415950 3 chr1 7415951 7415952 + 7415950 4 chr1 7415951 7415952 + 7415950 5 chr1 7415951 7415952 + 7415950 Actual Chromosome Start End Strand Distance 0 chr1 7415951 7415952 + 7415950 1 chr1 7415951 7415952 + 7415950 2 chr1 7415951 7415952 + 7415950 3 chr1 7415951 7415952 + 7415950 4 chr1 7415951 7415952 + 7415950 5 chr1 7415951 7415952 + 7415950 Expected Chromosome Start End Strand Distance 0 chr1 7415951 7415952 + 7415950 1 chr1 7415951 7415952 + 7415950 2 chr1 7415951 7415952 + 7415950 3 chr1 7415951 7415952 + 7415950 4 chr1 7415951 7415952 + 7415950 5 chr1 7415951 7415952 + 7415950 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=6, step=1) Expected index RangeIndex(start=0, stop=6, step=1) index equal [ True True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpaifhiyzx/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpaifhiyzx/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp0hhy3cyg/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp0hhy3cyg/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpmw7g95nd/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpmw7g95nd/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 824905 830604 - 6760352 1 chr1 7236746 7237858 + 1586926 2 chr1 7236746 7237858 + 7236744 3 chr1 8242207 8251332 - 651010 4 chr1 8351252 8359289 - 760055 5 chr1 8617380 8625461 + 2967560 6 chr1 8617380 8625461 + 8617378 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 7236746 | 7237858 | a | 0 | ... | | chr1 | 7236746 | 7237858 | a | 0 | ... | | chr1 | 8617380 | 8625461 | a | 0 | ... | | chr1 | 8617380 | 8625461 | a | 0 | ... | | chr1 | 824905 | 830604 | a | 0 | ... | | chr1 | 8351252 | 8359289 | a | 0 | ... | | chr1 | 8242207 | 8251332 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 7 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 4 chr1 824905 830604 - 6760352 0 chr1 7236746 7237858 + 1586926 1 chr1 7236746 7237858 + 7236744 6 chr1 8242207 8251332 - 651010 5 chr1 8351252 8359289 - 760055 2 chr1 8617380 8625461 + 2967560 3 chr1 8617380 8625461 + 8617378 df2 Chromosome Start End Strand Distance 0 chr1 824905 830604 - 6760352 1 chr1 7236746 7237858 + 1586926 2 chr1 7236746 7237858 + 7236744 3 chr1 8242207 8251332 - 651010 4 chr1 8351252 8359289 - 760055 5 chr1 8617380 8625461 + 2967560 6 chr1 8617380 8625461 + 8617378 Actual Chromosome Start End Strand Distance 0 chr1 824905 830604 - 6760352 1 chr1 7236746 7237858 + 1586926 2 chr1 7236746 7237858 + 7236744 3 chr1 8242207 8251332 - 651010 4 chr1 8351252 8359289 - 760055 5 chr1 8617380 8625461 + 2967560 6 chr1 8617380 8625461 + 8617378 Expected Chromosome Start End Strand Distance 0 chr1 824905 830604 - 6760352 1 chr1 7236746 7237858 + 1586926 2 chr1 7236746 7237858 + 7236744 3 chr1 8242207 8251332 - 651010 4 chr1 8351252 8359289 - 760055 5 chr1 8617380 8625461 + 2967560 6 chr1 8617380 8625461 + 8617378 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=7, step=1) Expected index RangeIndex(start=0, stop=7, step=1) index equal [ True True True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpflfsmkm5/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpflfsmkm5/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 824905 830604 - 824903 1 chr1 824905 830604 - 4810267 3 chr1 8242207 8251332 - 651010 4 chr1 8242207 8251332 - 2592387 5 chr1 8351252 8359289 - 760055 6 chr1 8351252 8359289 - 2701432 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 824905 | 830604 | a | 0 | ... | | chr1 | 824905 | 830604 | a | 0 | ... | | chr1 | 8351252 | 8359289 | a | 0 | ... | | chr1 | 8351252 | 8359289 | a | 0 | ... | | chr1 | 8242207 | 8251332 | a | 0 | ... | | chr1 | 8242207 | 8251332 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 6 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 824905 830604 - 824903 1 chr1 824905 830604 - 4810267 4 chr1 8242207 8251332 - 651010 5 chr1 8242207 8251332 - 2592387 2 chr1 8351252 8359289 - 760055 3 chr1 8351252 8359289 - 2701432 df2 Chromosome Start End Strand Distance 0 chr1 824905 830604 - 824903 1 chr1 824905 830604 - 4810267 3 chr1 8242207 8251332 - 651010 4 chr1 8242207 8251332 - 2592387 5 chr1 8351252 8359289 - 760055 6 chr1 8351252 8359289 - 2701432 Actual Chromosome Start End Strand Distance 0 chr1 824905 830604 - 824903 1 chr1 824905 830604 - 4810267 2 chr1 8242207 8251332 - 651010 3 chr1 8242207 8251332 - 2592387 4 chr1 8351252 8359289 - 760055 5 chr1 8351252 8359289 - 2701432 Expected Chromosome Start End Strand Distance 0 chr1 824905 830604 - 824903 1 chr1 824905 830604 - 4810267 2 chr1 8242207 8251332 - 651010 3 chr1 8242207 8251332 - 2592387 4 chr1 8351252 8359289 - 760055 5 chr1 8351252 8359289 - 2701432 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=6, step=1) Expected index RangeIndex(start=0, stop=6, step=1) index equal [ True True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp4akmlk6j/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp4akmlk6j/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpmo3srtg5/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpmo3srtg5/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpp6f4dof8/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpp6f4dof8/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpgpitc6o1/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpgpitc6o1/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpybupx1yc/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpybupx1yc/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 1736924 1740508 - 5623444 1 chr1 1736924 1740508 - 6703768 2 chr1 2052327 2060996 + 3377943 3 chr1 2052327 2060996 + 6383280 4 chr1 9678835 9686666 + 1231356 5 chr1 9678835 9686666 + 4229934 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 2052327 | 2060996 | a | 0 | ... | | chr1 | 2052327 | 2060996 | a | 0 | ... | | chr1 | 9678835 | 9686666 | a | 0 | ... | | chr1 | 9678835 | 9686666 | a | 0 | ... | | chr1 | 1736924 | 1740508 | a | 0 | ... | | chr1 | 1736924 | 1740508 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 6 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 4 chr1 1736924 1740508 - 5623444 5 chr1 1736924 1740508 - 6703768 0 chr1 2052327 2060996 + 3377943 1 chr1 2052327 2060996 + 6383280 2 chr1 9678835 9686666 + 1231356 3 chr1 9678835 9686666 + 4229934 df2 Chromosome Start End Strand Distance 0 chr1 1736924 1740508 - 5623444 1 chr1 1736924 1740508 - 6703768 2 chr1 2052327 2060996 + 3377943 3 chr1 2052327 2060996 + 6383280 4 chr1 9678835 9686666 + 1231356 5 chr1 9678835 9686666 + 4229934 Actual Chromosome Start End Strand Distance 0 chr1 1736924 1740508 - 5623444 1 chr1 1736924 1740508 - 6703768 2 chr1 2052327 2060996 + 3377943 3 chr1 2052327 2060996 + 6383280 4 chr1 9678835 9686666 + 1231356 5 chr1 9678835 9686666 + 4229934 Expected Chromosome Start End Strand Distance 0 chr1 1736924 1740508 - 5623444 1 chr1 1736924 1740508 - 6703768 2 chr1 2052327 2060996 + 3377943 3 chr1 2052327 2060996 + 6383280 4 chr1 9678835 9686666 + 1231356 5 chr1 9678835 9686666 + 4229934 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=6, step=1) Expected index RangeIndex(start=0, stop=6, step=1) index equal [ True True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpk6d2trb1/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpk6d2trb1/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 1736924 1740508 - 311820 1 chr1 1736924 1740508 - 7938328 2 chr1 2052327 2060996 + 311820 3 chr1 9678835 9686666 + 7938328 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 2052327 | 2060996 | a | 0 | ... | | chr1 | 9678835 | 9686666 | a | 0 | ... | | chr1 | 1736924 | 1740508 | a | 0 | ... | | chr1 | 1736924 | 1740508 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 4 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 2 chr1 1736924 1740508 - 311820 3 chr1 1736924 1740508 - 7938328 0 chr1 2052327 2060996 + 311820 1 chr1 9678835 9686666 + 7938328 df2 Chromosome Start End Strand Distance 0 chr1 1736924 1740508 - 311820 1 chr1 1736924 1740508 - 7938328 2 chr1 2052327 2060996 + 311820 3 chr1 9678835 9686666 + 7938328 Actual Chromosome Start End Strand Distance 0 chr1 1736924 1740508 - 311820 1 chr1 1736924 1740508 - 7938328 2 chr1 2052327 2060996 + 311820 3 chr1 9678835 9686666 + 7938328 Expected Chromosome Start End Strand Distance 0 chr1 1736924 1740508 - 311820 1 chr1 1736924 1740508 - 7938328 2 chr1 2052327 2060996 + 311820 3 chr1 9678835 9686666 + 7938328 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=4, step=1) Expected index RangeIndex(start=0, stop=4, step=1) index equal [ True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp3ygaqwqu/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp3ygaqwqu/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmppatgjw8g/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmppatgjw8g/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpah37azgv/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpah37azgv/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp2betvbbz/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp2betvbbz/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp6ss44wk1/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp6ss44wk1/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 9815380 9822919 + 634569 1 chr1 9815380 9822919 + 1322756 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 9815380 | 9822919 | a | 0 | ... | | chr1 | 9815380 | 9822919 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 9815380 9822919 + 634569 1 chr1 9815380 9822919 + 1322756 df2 Chromosome Start End Strand Distance 0 chr1 9815380 9822919 + 634569 1 chr1 9815380 9822919 + 1322756 Actual Chromosome Start End Strand Distance 0 chr1 9815380 9822919 + 634569 1 chr1 9815380 9822919 + 1322756 Expected Chromosome Start End Strand Distance 0 chr1 9815380 9822919 + 634569 1 chr1 9815380 9822919 + 1322756 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=2, step=1) Expected index RangeIndex(start=0, stop=2, step=1) index equal [ True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpb1s6tbvf/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpb1s6tbvf/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 9815380 9822919 + 634569 1 chr1 9815380 9822919 + 1322756 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 9815380 | 9822919 | a | 0 | ... | | chr1 | 9815380 | 9822919 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 9815380 9822919 + 634569 1 chr1 9815380 9822919 + 1322756 df2 Chromosome Start End Strand Distance 0 chr1 9815380 9822919 + 634569 1 chr1 9815380 9822919 + 1322756 Actual Chromosome Start End Strand Distance 0 chr1 9815380 9822919 + 634569 1 chr1 9815380 9822919 + 1322756 Expected Chromosome Start End Strand Distance 0 chr1 9815380 9822919 + 634569 1 chr1 9815380 9822919 + 1322756 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=2, step=1) Expected index RangeIndex(start=0, stop=2, step=1) index equal [ True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp56nysxvk/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp56nysxvk/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 9815380 9822919 + 9806360 1 chr1 9815380 9822919 + 9809618 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 9815380 | 9822919 | a | 0 | ... | | chr1 | 9815380 | 9822919 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 9815380 9822919 + 9806360 1 chr1 9815380 9822919 + 9809618 df2 Chromosome Start End Strand Distance 0 chr1 9815380 9822919 + 9806360 1 chr1 9815380 9822919 + 9809618 Actual Chromosome Start End Strand Distance 0 chr1 9815380 9822919 + 9806360 1 chr1 9815380 9822919 + 9809618 Expected Chromosome Start End Strand Distance 0 chr1 9815380 9822919 + 9806360 1 chr1 9815380 9822919 + 9809618 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=2, step=1) Expected index RangeIndex(start=0, stop=2, step=1) index equal [ True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpnrcf5s1u/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpnrcf5s1u/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 9815380 9822919 + 9815379 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 9815380 | 9822919 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 9815380 9822919 + 9815379 df2 Chromosome Start End Strand Distance 0 chr1 9815380 9822919 + 9815379 Actual Chromosome Start End Strand Distance 0 chr1 9815380 9822919 + 9815379 Expected Chromosome Start End Strand Distance 0 chr1 9815380 9822919 + 9815379 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=1, step=1) Expected index RangeIndex(start=0, stop=1, step=1) index equal [ True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpb7dmptth/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpb7dmptth/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 9815380 9822919 + 9815379 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 9815380 | 9822919 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 9815380 9822919 + 9815379 df2 Chromosome Start End Strand Distance 0 chr1 9815380 9822919 + 9815379 Actual Chromosome Start End Strand Distance 0 chr1 9815380 9822919 + 9815379 Expected Chromosome Start End Strand Distance 0 chr1 9815380 9822919 + 9815379 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=1, step=1) Expected index RangeIndex(start=0, stop=1, step=1) index equal [ True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpl1gf0ug0/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpl1gf0ug0/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmprap0_osb/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmprap0_osb/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpo2yxto3q/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpo2yxto3q/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 904050 913092 - 1287398 1 chr1 904050 913092 - 3473925 2 chr1 3165216 3172060 - 959280 3 chr1 3165216 3172060 - 1214957 4 chr1 5612708 5615449 - 1220245 5 chr1 5612708 5615449 - 1295104 6 chr1 8245863 8254905 - 1329864 7 chr1 8245863 8254905 - 3853400 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 904050 | 913092 | a | 0 | ... | | chr1 | 904050 | 913092 | a | 0 | ... | | chr1 | 8245863 | 8254905 | a | 0 | ... | | chr1 | 8245863 | 8254905 | a | 0 | ... | | chr1 | 3165216 | 3172060 | a | 0 | ... | | chr1 | 3165216 | 3172060 | a | 0 | ... | | chr1 | 5612708 | 5615449 | a | 0 | ... | | chr1 | 5612708 | 5615449 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 8 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 904050 913092 - 1287398 1 chr1 904050 913092 - 3473925 4 chr1 3165216 3172060 - 959280 5 chr1 3165216 3172060 - 1214957 6 chr1 5612708 5615449 - 1220245 7 chr1 5612708 5615449 - 1295104 2 chr1 8245863 8254905 - 1329864 3 chr1 8245863 8254905 - 3853400 df2 Chromosome Start End Strand Distance 0 chr1 904050 913092 - 1287398 1 chr1 904050 913092 - 3473925 2 chr1 3165216 3172060 - 959280 3 chr1 3165216 3172060 - 1214957 4 chr1 5612708 5615449 - 1220245 5 chr1 5612708 5615449 - 1295104 6 chr1 8245863 8254905 - 1329864 7 chr1 8245863 8254905 - 3853400 Actual Chromosome Start End Strand Distance 0 chr1 904050 913092 - 1287398 1 chr1 904050 913092 - 3473925 2 chr1 3165216 3172060 - 959280 3 chr1 3165216 3172060 - 1214957 4 chr1 5612708 5615449 - 1220245 5 chr1 5612708 5615449 - 1295104 6 chr1 8245863 8254905 - 1329864 7 chr1 8245863 8254905 - 3853400 Expected Chromosome Start End Strand Distance 0 chr1 904050 913092 - 1287398 1 chr1 904050 913092 - 3473925 2 chr1 3165216 3172060 - 959280 3 chr1 3165216 3172060 - 1214957 4 chr1 5612708 5615449 - 1220245 5 chr1 5612708 5615449 - 1295104 6 chr1 8245863 8254905 - 1329864 7 chr1 8245863 8254905 - 3853400 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=8, step=1) Expected index RangeIndex(start=0, stop=8, step=1) index equal [ True True True True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpcfl295ir/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpcfl295ir/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 904050 913092 - 904035 1 chr1 3165216 3172060 - 3165201 2 chr1 5612708 5615449 - 5612693 3 chr1 8245863 8254905 - 8245848 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 904050 | 913092 | a | 0 | ... | | chr1 | 8245863 | 8254905 | a | 0 | ... | | chr1 | 3165216 | 3172060 | a | 0 | ... | | chr1 | 5612708 | 5615449 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 4 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 904050 913092 - 904035 2 chr1 3165216 3172060 - 3165201 3 chr1 5612708 5615449 - 5612693 1 chr1 8245863 8254905 - 8245848 df2 Chromosome Start End Strand Distance 0 chr1 904050 913092 - 904035 1 chr1 3165216 3172060 - 3165201 2 chr1 5612708 5615449 - 5612693 3 chr1 8245863 8254905 - 8245848 Actual Chromosome Start End Strand Distance 0 chr1 904050 913092 - 904035 1 chr1 3165216 3172060 - 3165201 2 chr1 5612708 5615449 - 5612693 3 chr1 8245863 8254905 - 8245848 Expected Chromosome Start End Strand Distance 0 chr1 904050 913092 - 904035 1 chr1 3165216 3172060 - 3165201 2 chr1 5612708 5615449 - 5612693 3 chr1 8245863 8254905 - 8245848 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=4, step=1) Expected index RangeIndex(start=0, stop=4, step=1) index equal [ True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpuunp260w/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpuunp260w/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 904050 913092 - 904035 1 chr1 3165216 3172060 - 3165201 2 chr1 5612708 5615449 - 5612693 3 chr1 8245863 8254905 + 8245862 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 8245863 | 8254905 | a | 0 | ... | | chr1 | 904050 | 913092 | a | 0 | ... | | chr1 | 3165216 | 3172060 | a | 0 | ... | | chr1 | 5612708 | 5615449 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 4 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 1 chr1 904050 913092 - 904035 2 chr1 3165216 3172060 - 3165201 3 chr1 5612708 5615449 - 5612693 0 chr1 8245863 8254905 + 8245862 df2 Chromosome Start End Strand Distance 0 chr1 904050 913092 - 904035 1 chr1 3165216 3172060 - 3165201 2 chr1 5612708 5615449 - 5612693 3 chr1 8245863 8254905 + 8245862 Actual Chromosome Start End Strand Distance 0 chr1 904050 913092 - 904035 1 chr1 3165216 3172060 - 3165201 2 chr1 5612708 5615449 - 5612693 3 chr1 8245863 8254905 + 8245862 Expected Chromosome Start End Strand Distance 0 chr1 904050 913092 - 904035 1 chr1 3165216 3172060 - 3165201 2 chr1 5612708 5615449 - 5612693 3 chr1 8245863 8254905 + 8245862 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=4, step=1) Expected index RangeIndex(start=0, stop=4, step=1) index equal [ True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp09y267y7/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp09y267y7/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 904050 913092 - 7332772 1 chr1 3165216 3172060 - 5073804 2 chr1 5612708 5615449 - 2630415 3 chr1 8245863 8254905 + 2630415 4 chr1 8245863 8254905 + 5073804 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 8245863 | 8254905 | a | 0 | ... | | chr1 | 8245863 | 8254905 | a | 0 | ... | | chr1 | 904050 | 913092 | a | 0 | ... | | chr1 | 3165216 | 3172060 | a | 0 | ... | | chr1 | 5612708 | 5615449 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 5 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 2 chr1 904050 913092 - 7332772 3 chr1 3165216 3172060 - 5073804 4 chr1 5612708 5615449 - 2630415 0 chr1 8245863 8254905 + 2630415 1 chr1 8245863 8254905 + 5073804 df2 Chromosome Start End Strand Distance 0 chr1 904050 913092 - 7332772 1 chr1 3165216 3172060 - 5073804 2 chr1 5612708 5615449 - 2630415 3 chr1 8245863 8254905 + 2630415 4 chr1 8245863 8254905 + 5073804 Actual Chromosome Start End Strand Distance 0 chr1 904050 913092 - 7332772 1 chr1 3165216 3172060 - 5073804 2 chr1 5612708 5615449 - 2630415 3 chr1 8245863 8254905 + 2630415 4 chr1 8245863 8254905 + 5073804 Expected Chromosome Start End Strand Distance 0 chr1 904050 913092 - 7332772 1 chr1 3165216 3172060 - 5073804 2 chr1 5612708 5615449 - 2630415 3 chr1 8245863 8254905 + 2630415 4 chr1 8245863 8254905 + 5073804 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=5, step=1) Expected index RangeIndex(start=0, stop=5, step=1) index equal [ True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpdhdrfkwq/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpdhdrfkwq/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 904050 907582 - 7338282 1 chr1 3165216 3173153 - 5072711 2 chr1 5612708 5618249 - 2627615 3 chr1 8245863 8255592 + 2630415 4 chr1 8245863 8255592 + 5073804 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 8245863 | 8255592 | a | 0 | ... | | chr1 | 8245863 | 8255592 | a | 0 | ... | | chr1 | 904050 | 907582 | a | 0 | ... | | chr1 | 3165216 | 3173153 | a | 0 | ... | | chr1 | 5612708 | 5618249 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 5 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 2 chr1 904050 907582 - 7338282 3 chr1 3165216 3173153 - 5072711 4 chr1 5612708 5618249 - 2627615 0 chr1 8245863 8255592 + 2630415 1 chr1 8245863 8255592 + 5073804 df2 Chromosome Start End Strand Distance 0 chr1 904050 907582 - 7338282 1 chr1 3165216 3173153 - 5072711 2 chr1 5612708 5618249 - 2627615 3 chr1 8245863 8255592 + 2630415 4 chr1 8245863 8255592 + 5073804 Actual Chromosome Start End Strand Distance 0 chr1 904050 907582 - 7338282 1 chr1 3165216 3173153 - 5072711 2 chr1 5612708 5618249 - 2627615 3 chr1 8245863 8255592 + 2630415 4 chr1 8245863 8255592 + 5073804 Expected Chromosome Start End Strand Distance 0 chr1 904050 907582 - 7338282 1 chr1 3165216 3173153 - 5072711 2 chr1 5612708 5618249 - 2627615 3 chr1 8245863 8255592 + 2630415 4 chr1 8245863 8255592 + 5073804 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=5, step=1) Expected index RangeIndex(start=0, stop=5, step=1) index equal [ True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp8_eqsrjn/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp8_eqsrjn/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 4 chr15 6310075 6318340 - 1927524 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr15 | 6310075 | 6318340 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr15 6310075 6318340 - 1927524 df2 Chromosome Start End Strand Distance 4 chr15 6310075 6318340 - 1927524 Actual Chromosome Start End Strand Distance 0 chr15 6310075 6318340 - 1927524 Expected Chromosome Start End Strand Distance 0 chr15 6310075 6318340 - 1927524 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=1, step=1) Expected index RangeIndex(start=0, stop=1, step=1) index equal [ True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp0q0438uj/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp0q0438uj/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 904050 907582 - 7338282 1 chr1 3165216 3173153 - 5072711 2 chr1 5612708 5618249 - 2627615 3 chr1 8245863 8255592 + 2627615 4 chr1 8245863 8255592 + 5072711 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 8245863 | 8255592 | a | 0 | ... | | chr1 | 8245863 | 8255592 | a | 0 | ... | | chr1 | 904050 | 907582 | a | 0 | ... | | chr1 | 3165216 | 3173153 | a | 0 | ... | | chr1 | 5612708 | 5618249 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 5 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 2 chr1 904050 907582 - 7338282 3 chr1 3165216 3173153 - 5072711 4 chr1 5612708 5618249 - 2627615 0 chr1 8245863 8255592 + 2627615 1 chr1 8245863 8255592 + 5072711 df2 Chromosome Start End Strand Distance 0 chr1 904050 907582 - 7338282 1 chr1 3165216 3173153 - 5072711 2 chr1 5612708 5618249 - 2627615 3 chr1 8245863 8255592 + 2627615 4 chr1 8245863 8255592 + 5072711 Actual Chromosome Start End Strand Distance 0 chr1 904050 907582 - 7338282 1 chr1 3165216 3173153 - 5072711 2 chr1 5612708 5618249 - 2627615 3 chr1 8245863 8255592 + 2627615 4 chr1 8245863 8255592 + 5072711 Expected Chromosome Start End Strand Distance 0 chr1 904050 907582 - 7338282 1 chr1 3165216 3173153 - 5072711 2 chr1 5612708 5618249 - 2627615 3 chr1 8245863 8255592 + 2627615 4 chr1 8245863 8255592 + 5072711 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=5, step=1) Expected index RangeIndex(start=0, stop=5, step=1) index equal [ True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp_sd9s_in/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp_sd9s_in/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpwnng5yez/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpwnng5yez/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 7348646 7350458 + 980415 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 7348646 | 7350458 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 7348646 7350458 + 980415 df2 Chromosome Start End Strand Distance 0 chr1 7348646 7350458 + 980415 Actual Chromosome Start End Strand Distance 0 chr1 7348646 7350458 + 980415 Expected Chromosome Start End Strand Distance 0 chr1 7348646 7350458 + 980415 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=1, step=1) Expected index RangeIndex(start=0, stop=1, step=1) index equal [ True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpo4bqq1n_/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpo4bqq1n_/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 7348646 7350458 + 980415 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 7348646 | 7350458 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 7348646 7350458 + 980415 df2 Chromosome Start End Strand Distance 0 chr1 7348646 7350458 + 980415 Actual Chromosome Start End Strand Distance 0 chr1 7348646 7350458 + 980415 Expected Chromosome Start End Strand Distance 0 chr1 7348646 7350458 + 980415 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=1, step=1) Expected index RangeIndex(start=0, stop=1, step=1) index equal [ True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpc1yr95g2/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpc1yr95g2/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpvm89frh4/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpvm89frh4/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpc5aychgq/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpc5aychgq/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpbgvgw490/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpbgvgw490/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 7348646 7354941 - 7346834 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 7348646 | 7354941 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 7348646 7354941 - 7346834 df2 Chromosome Start End Strand Distance 0 chr1 7348646 7354941 - 7346834 Actual Chromosome Start End Strand Distance 0 chr1 7348646 7354941 - 7346834 Expected Chromosome Start End Strand Distance 0 chr1 7348646 7354941 - 7346834 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=1, step=1) Expected index RangeIndex(start=0, stop=1, step=1) index equal [ True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp685vhfyp/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp685vhfyp/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 5 chr1 8205491 8210540 - 109322 6 chr1 8205491 8210540 - 113166 8 chr1 8825204 8834380 - 729035 9 chr1 8825204 8834380 - 732879 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 8205491 | 8210540 | a | 0 | ... | | chr1 | 8205491 | 8210540 | a | 0 | ... | | chr1 | 8825204 | 8834380 | a | 0 | ... | | chr1 | 8825204 | 8834380 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 4 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 8205491 8210540 - 109322 1 chr1 8205491 8210540 - 113166 2 chr1 8825204 8834380 - 729035 3 chr1 8825204 8834380 - 732879 df2 Chromosome Start End Strand Distance 5 chr1 8205491 8210540 - 109322 6 chr1 8205491 8210540 - 113166 8 chr1 8825204 8834380 - 729035 9 chr1 8825204 8834380 - 732879 Actual Chromosome Start End Strand Distance 0 chr1 8205491 8210540 - 109322 1 chr1 8205491 8210540 - 113166 2 chr1 8825204 8834380 - 729035 3 chr1 8825204 8834380 - 732879 Expected Chromosome Start End Strand Distance 0 chr1 8205491 8210540 - 109322 1 chr1 8205491 8210540 - 113166 2 chr1 8825204 8834380 - 729035 3 chr1 8825204 8834380 - 732879 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=4, step=1) Expected index RangeIndex(start=0, stop=4, step=1) index equal [ True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpgut6k2_q/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpgut6k2_q/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 7 chr1 8825204 8834380 - 729035 8 chr1 8825204 8834380 - 732879 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 8825204 | 8834380 | a | 0 | ... | | chr1 | 8825204 | 8834380 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 8825204 8834380 - 729035 1 chr1 8825204 8834380 - 732879 df2 Chromosome Start End Strand Distance 7 chr1 8825204 8834380 - 729035 8 chr1 8825204 8834380 - 732879 Actual Chromosome Start End Strand Distance 0 chr1 8825204 8834380 - 729035 1 chr1 8825204 8834380 - 732879 Expected Chromosome Start End Strand Distance 0 chr1 8825204 8834380 - 729035 1 chr1 8825204 8834380 - 732879 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=2, step=1) Expected index RangeIndex(start=0, stop=2, step=1) index equal [ True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmptl6hmr7u/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmptl6hmr7u/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 7 chr1 8825204 8834380 - 729035 8 chr1 8825204 8834380 - 732879 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 8825204 | 8834380 | a | 0 | ... | | chr1 | 8825204 | 8834380 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 8825204 8834380 - 729035 1 chr1 8825204 8834380 - 732879 df2 Chromosome Start End Strand Distance 7 chr1 8825204 8834380 - 729035 8 chr1 8825204 8834380 - 732879 Actual Chromosome Start End Strand Distance 0 chr1 8825204 8834380 - 729035 1 chr1 8825204 8834380 - 732879 Expected Chromosome Start End Strand Distance 0 chr1 8825204 8834380 - 729035 1 chr1 8825204 8834380 - 732879 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=2, step=1) Expected index RangeIndex(start=0, stop=2, step=1) index equal [ True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpbwhizlc0/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpbwhizlc0/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 2719586 2721637 + 6103568 1 chr1 3898573 3907469 + 4917736 2 chr1 5015841 5020332 + 3804873 3 chr1 6012866 6021812 + 2803393 4 chr1 7446726 7455423 + 1369782 5 chr1 8205491 8210540 + 614665 6 chr1 8407889 8409768 + 415437 7 chr1 8825204 8834380 - 415437 8 chr1 8825204 8834380 - 614665 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 8407889 | 8409768 | a | 0 | ... | | chr1 | 5015841 | 5020332 | a | 0 | ... | | chr1 | 6012866 | 6021812 | a | 0 | ... | | chr1 | 2719586 | 2721637 | a | 0 | ... | | ... | ... | ... | ... | ... | ... | | chr1 | 7446726 | 7455423 | a | 0 | ... | | chr1 | 8205491 | 8210540 | a | 0 | ... | | chr1 | 8825204 | 8834380 | a | 0 | ... | | chr1 | 8825204 | 8834380 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 9 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 3 chr1 2719586 2721637 + 6103568 4 chr1 3898573 3907469 + 4917736 1 chr1 5015841 5020332 + 3804873 2 chr1 6012866 6021812 + 2803393 5 chr1 7446726 7455423 + 1369782 6 chr1 8205491 8210540 + 614665 0 chr1 8407889 8409768 + 415437 7 chr1 8825204 8834380 - 415437 8 chr1 8825204 8834380 - 614665 df2 Chromosome Start End Strand Distance 0 chr1 2719586 2721637 + 6103568 1 chr1 3898573 3907469 + 4917736 2 chr1 5015841 5020332 + 3804873 3 chr1 6012866 6021812 + 2803393 4 chr1 7446726 7455423 + 1369782 5 chr1 8205491 8210540 + 614665 6 chr1 8407889 8409768 + 415437 7 chr1 8825204 8834380 - 415437 8 chr1 8825204 8834380 - 614665 Actual Chromosome Start End Strand Distance 0 chr1 2719586 2721637 + 6103568 1 chr1 3898573 3907469 + 4917736 2 chr1 5015841 5020332 + 3804873 3 chr1 6012866 6021812 + 2803393 4 chr1 7446726 7455423 + 1369782 5 chr1 8205491 8210540 + 614665 6 chr1 8407889 8409768 + 415437 7 chr1 8825204 8834380 - 415437 8 chr1 8825204 8834380 - 614665 Expected Chromosome Start End Strand Distance 0 chr1 2719586 2721637 + 6103568 1 chr1 3898573 3907469 + 4917736 2 chr1 5015841 5020332 + 3804873 3 chr1 6012866 6021812 + 2803393 4 chr1 7446726 7455423 + 1369782 5 chr1 8205491 8210540 + 614665 6 chr1 8407889 8409768 + 415437 7 chr1 8825204 8834380 - 415437 8 chr1 8825204 8834380 - 614665 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=9, step=1) Expected index RangeIndex(start=0, stop=9, step=1) index equal [ True True True True True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmplzn4u8hk/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmplzn4u8hk/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 2719586 2721637 + 2719585 1 chr1 2719586 2721637 + 4725090 2 chr1 3898573 3907469 + 1178987 3 chr1 3898573 3907469 + 3539258 4 chr1 5015841 5020332 + 2296255 5 chr1 5015841 5020332 + 2426395 6 chr1 6012866 6021812 + 1424915 7 chr1 6012866 6021812 + 2386078 8 chr1 7446726 7455423 + 952467 9 chr1 7446726 7455423 + 4727140 10 chr1 8205491 8210540 + 197350 11 chr1 8205491 8210540 + 758765 12 chr1 8407889 8409768 + 961163 13 chr1 8407889 8409768 + 5688303 14 chr1 8825204 8834380 - 3809357 16 chr20 5811917 5820567 + 2587323 17 chr22 7758723 7759096 + 648794 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 8407889 | 8409768 | a | 0 | ... | | chr1 | 8407889 | 8409768 | a | 0 | ... | | chr1 | 5015841 | 5020332 | a | 0 | ... | | chr1 | 5015841 | 5020332 | a | 0 | ... | | ... | ... | ... | ... | ... | ... | | chr1 | 7446726 | 7455423 | a | 0 | ... | | chr1 | 8205491 | 8210540 | a | 0 | ... | | chr1 | 8205491 | 8210540 | a | 0 | ... | | chr1 | 8825204 | 8834380 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 17 rows and 12 columns from 3 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 6 chr1 2719586 2721637 + 2719585 7 chr1 2719586 2721637 + 4725090 8 chr1 3898573 3907469 + 1178987 9 chr1 3898573 3907469 + 3539258 2 chr1 5015841 5020332 + 2296255 3 chr1 5015841 5020332 + 2426395 15 chr20 5811917 5820567 + 2587323 4 chr1 6012866 6021812 + 1424915 5 chr1 6012866 6021812 + 2386078 10 chr1 7446726 7455423 + 952467 11 chr1 7446726 7455423 + 4727140 16 chr22 7758723 7759096 + 648794 12 chr1 8205491 8210540 + 197350 13 chr1 8205491 8210540 + 758765 0 chr1 8407889 8409768 + 961163 1 chr1 8407889 8409768 + 5688303 14 chr1 8825204 8834380 - 3809357 df2 Chromosome Start End Strand Distance 0 chr1 2719586 2721637 + 2719585 1 chr1 2719586 2721637 + 4725090 2 chr1 3898573 3907469 + 1178987 3 chr1 3898573 3907469 + 3539258 4 chr1 5015841 5020332 + 2296255 5 chr1 5015841 5020332 + 2426395 16 chr20 5811917 5820567 + 2587323 6 chr1 6012866 6021812 + 1424915 7 chr1 6012866 6021812 + 2386078 8 chr1 7446726 7455423 + 952467 9 chr1 7446726 7455423 + 4727140 17 chr22 7758723 7759096 + 648794 10 chr1 8205491 8210540 + 197350 11 chr1 8205491 8210540 + 758765 12 chr1 8407889 8409768 + 961163 13 chr1 8407889 8409768 + 5688303 14 chr1 8825204 8834380 - 3809357 Actual Chromosome Start End Strand Distance 0 chr1 2719586 2721637 + 2719585 1 chr1 2719586 2721637 + 4725090 2 chr1 3898573 3907469 + 1178987 3 chr1 3898573 3907469 + 3539258 4 chr1 5015841 5020332 + 2296255 5 chr1 5015841 5020332 + 2426395 6 chr1 6012866 6021812 + 1424915 7 chr1 6012866 6021812 + 2386078 8 chr1 7446726 7455423 + 952467 9 chr1 7446726 7455423 + 4727140 10 chr1 8205491 8210540 + 197350 11 chr1 8205491 8210540 + 758765 12 chr1 8407889 8409768 + 961163 13 chr1 8407889 8409768 + 5688303 14 chr1 8825204 8834380 - 3809357 15 chr20 5811917 5820567 + 2587323 16 chr22 7758723 7759096 + 648794 Expected Chromosome Start End Strand Distance 0 chr1 2719586 2721637 + 2719585 1 chr1 2719586 2721637 + 4725090 2 chr1 3898573 3907469 + 1178987 3 chr1 3898573 3907469 + 3539258 4 chr1 5015841 5020332 + 2296255 5 chr1 5015841 5020332 + 2426395 6 chr1 6012866 6021812 + 1424915 7 chr1 6012866 6021812 + 2386078 8 chr1 7446726 7455423 + 952467 9 chr1 7446726 7455423 + 4727140 10 chr1 8205491 8210540 + 197350 11 chr1 8205491 8210540 + 758765 12 chr1 8407889 8409768 + 961163 13 chr1 8407889 8409768 + 5688303 14 chr1 8825204 8834380 - 3809357 15 chr20 5811917 5820567 + 2587323 16 chr22 7758723 7759096 + 648794 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=17, step=1) Expected index RangeIndex(start=0, stop=17, step=1) index equal [ True True True True True True True True True True True True True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp6sz1pxhz/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp6sz1pxhz/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 2719586 2721637 + 2719585 1 chr1 2719586 2721637 + 4725090 2 chr1 3898573 3907469 + 1178987 3 chr1 3898573 3907469 + 3539258 4 chr1 5015841 5020332 + 2296255 5 chr1 5015841 5020332 + 2426395 6 chr1 6012866 6021812 + 1424915 7 chr1 6012866 6021812 + 2386078 8 chr1 7446726 7455423 + 952467 9 chr1 7446726 7455423 + 4727140 10 chr1 8205491 8210540 + 197350 11 chr1 8205491 8210540 + 758765 12 chr1 8407889 8409768 + 961163 13 chr1 8407889 8409768 + 5688303 14 chr1 8825204 8834380 - 3809357 16 chr20 5811917 5820567 + 2587323 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 8407889 | 8409768 | a | 0 | ... | | chr1 | 8407889 | 8409768 | a | 0 | ... | | chr1 | 5015841 | 5020332 | a | 0 | ... | | chr1 | 5015841 | 5020332 | a | 0 | ... | | ... | ... | ... | ... | ... | ... | | chr1 | 7446726 | 7455423 | a | 0 | ... | | chr1 | 8205491 | 8210540 | a | 0 | ... | | chr1 | 8205491 | 8210540 | a | 0 | ... | | chr1 | 8825204 | 8834380 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 16 rows and 12 columns from 2 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 6 chr1 2719586 2721637 + 2719585 7 chr1 2719586 2721637 + 4725090 8 chr1 3898573 3907469 + 1178987 9 chr1 3898573 3907469 + 3539258 2 chr1 5015841 5020332 + 2296255 3 chr1 5015841 5020332 + 2426395 15 chr20 5811917 5820567 + 2587323 4 chr1 6012866 6021812 + 1424915 5 chr1 6012866 6021812 + 2386078 10 chr1 7446726 7455423 + 952467 11 chr1 7446726 7455423 + 4727140 12 chr1 8205491 8210540 + 197350 13 chr1 8205491 8210540 + 758765 0 chr1 8407889 8409768 + 961163 1 chr1 8407889 8409768 + 5688303 14 chr1 8825204 8834380 - 3809357 df2 Chromosome Start End Strand Distance 0 chr1 2719586 2721637 + 2719585 1 chr1 2719586 2721637 + 4725090 2 chr1 3898573 3907469 + 1178987 3 chr1 3898573 3907469 + 3539258 4 chr1 5015841 5020332 + 2296255 5 chr1 5015841 5020332 + 2426395 16 chr20 5811917 5820567 + 2587323 6 chr1 6012866 6021812 + 1424915 7 chr1 6012866 6021812 + 2386078 8 chr1 7446726 7455423 + 952467 9 chr1 7446726 7455423 + 4727140 10 chr1 8205491 8210540 + 197350 11 chr1 8205491 8210540 + 758765 12 chr1 8407889 8409768 + 961163 13 chr1 8407889 8409768 + 5688303 14 chr1 8825204 8834380 - 3809357 Actual Chromosome Start End Strand Distance 0 chr1 2719586 2721637 + 2719585 1 chr1 2719586 2721637 + 4725090 2 chr1 3898573 3907469 + 1178987 3 chr1 3898573 3907469 + 3539258 4 chr1 5015841 5020332 + 2296255 5 chr1 5015841 5020332 + 2426395 6 chr1 6012866 6021812 + 1424915 7 chr1 6012866 6021812 + 2386078 8 chr1 7446726 7455423 + 952467 9 chr1 7446726 7455423 + 4727140 10 chr1 8205491 8210540 + 197350 11 chr1 8205491 8210540 + 758765 12 chr1 8407889 8409768 + 961163 13 chr1 8407889 8409768 + 5688303 14 chr1 8825204 8834380 - 3809357 15 chr20 5811917 5820567 + 2587323 Expected Chromosome Start End Strand Distance 0 chr1 2719586 2721637 + 2719585 1 chr1 2719586 2721637 + 4725090 2 chr1 3898573 3907469 + 1178987 3 chr1 3898573 3907469 + 3539258 4 chr1 5015841 5020332 + 2296255 5 chr1 5015841 5020332 + 2426395 6 chr1 6012866 6021812 + 1424915 7 chr1 6012866 6021812 + 2386078 8 chr1 7446726 7455423 + 952467 9 chr1 7446726 7455423 + 4727140 10 chr1 8205491 8210540 + 197350 11 chr1 8205491 8210540 + 758765 12 chr1 8407889 8409768 + 961163 13 chr1 8407889 8409768 + 5688303 14 chr1 8825204 8834380 - 3809357 15 chr20 5811917 5820567 + 2587323 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=16, step=1) Expected index RangeIndex(start=0, stop=16, step=1) index equal [ True True True True True True True True True True True True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpizyaxvok/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpizyaxvok/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 2719586 2721637 + 2719585 1 chr1 2719586 2721637 + 4725090 2 chr1 3898573 3907469 + 3539258 3 chr1 3898573 3907469 + 3898572 4 chr1 5015841 5020332 + 2426395 5 chr1 5015841 5020332 + 3387558 6 chr1 6012866 6021812 + 1424915 7 chr1 6012866 6021812 + 2386078 8 chr1 7446726 7455423 + 952467 9 chr1 7446726 7455423 + 7446725 10 chr1 8205491 8210540 + 197350 11 chr1 8205491 8210540 + 758765 12 chr1 8407889 8409768 + 961163 13 chr1 8407889 8409768 + 8407888 14 chr1 8825204 8834380 - 3809357 16 chr20 5811917 5820567 + 2587323 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 8407889 | 8409768 | a | 0 | ... | | chr1 | 8407889 | 8409768 | a | 0 | ... | | chr1 | 5015841 | 5020332 | a | 0 | ... | | chr1 | 5015841 | 5020332 | a | 0 | ... | | ... | ... | ... | ... | ... | ... | | chr1 | 7446726 | 7455423 | a | 0 | ... | | chr1 | 8205491 | 8210540 | a | 0 | ... | | chr1 | 8205491 | 8210540 | a | 0 | ... | | chr1 | 8825204 | 8834380 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 16 rows and 12 columns from 2 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 6 chr1 2719586 2721637 + 2719585 7 chr1 2719586 2721637 + 4725090 8 chr1 3898573 3907469 + 3539258 9 chr1 3898573 3907469 + 3898572 2 chr1 5015841 5020332 + 2426395 3 chr1 5015841 5020332 + 3387558 15 chr20 5811917 5820567 + 2587323 4 chr1 6012866 6021812 + 1424915 5 chr1 6012866 6021812 + 2386078 10 chr1 7446726 7455423 + 952467 11 chr1 7446726 7455423 + 7446725 12 chr1 8205491 8210540 + 197350 13 chr1 8205491 8210540 + 758765 0 chr1 8407889 8409768 + 961163 1 chr1 8407889 8409768 + 8407888 14 chr1 8825204 8834380 - 3809357 df2 Chromosome Start End Strand Distance 0 chr1 2719586 2721637 + 2719585 1 chr1 2719586 2721637 + 4725090 2 chr1 3898573 3907469 + 3539258 3 chr1 3898573 3907469 + 3898572 4 chr1 5015841 5020332 + 2426395 5 chr1 5015841 5020332 + 3387558 16 chr20 5811917 5820567 + 2587323 6 chr1 6012866 6021812 + 1424915 7 chr1 6012866 6021812 + 2386078 8 chr1 7446726 7455423 + 952467 9 chr1 7446726 7455423 + 7446725 10 chr1 8205491 8210540 + 197350 11 chr1 8205491 8210540 + 758765 12 chr1 8407889 8409768 + 961163 13 chr1 8407889 8409768 + 8407888 14 chr1 8825204 8834380 - 3809357 Actual Chromosome Start End Strand Distance 0 chr1 2719586 2721637 + 2719585 1 chr1 2719586 2721637 + 4725090 2 chr1 3898573 3907469 + 3539258 3 chr1 3898573 3907469 + 3898572 4 chr1 5015841 5020332 + 2426395 5 chr1 5015841 5020332 + 3387558 6 chr1 6012866 6021812 + 1424915 7 chr1 6012866 6021812 + 2386078 8 chr1 7446726 7455423 + 952467 9 chr1 7446726 7455423 + 7446725 10 chr1 8205491 8210540 + 197350 11 chr1 8205491 8210540 + 758765 12 chr1 8407889 8409768 + 961163 13 chr1 8407889 8409768 + 8407888 14 chr1 8825204 8834380 - 3809357 15 chr20 5811917 5820567 + 2587323 Expected Chromosome Start End Strand Distance 0 chr1 2719586 2721637 + 2719585 1 chr1 2719586 2721637 + 4725090 2 chr1 3898573 3907469 + 3539258 3 chr1 3898573 3907469 + 3898572 4 chr1 5015841 5020332 + 2426395 5 chr1 5015841 5020332 + 3387558 6 chr1 6012866 6021812 + 1424915 7 chr1 6012866 6021812 + 2386078 8 chr1 7446726 7455423 + 952467 9 chr1 7446726 7455423 + 7446725 10 chr1 8205491 8210540 + 197350 11 chr1 8205491 8210540 + 758765 12 chr1 8407889 8409768 + 961163 13 chr1 8407889 8409768 + 8407888 14 chr1 8825204 8834380 - 3809357 15 chr20 5811917 5820567 + 2587323 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=16, step=1) Expected index RangeIndex(start=0, stop=16, step=1) index equal [ True True True True True True True True True True True True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpy35s2skq/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpy35s2skq/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 6884776 6890287 - 4141494 1 chr1 9762188 9769453 - 7018906 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 9762188 | 9769453 | a | 0 | ... | | chr1 | 6884776 | 6890287 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 1 chr1 6884776 6890287 - 4141494 0 chr1 9762188 9769453 - 7018906 df2 Chromosome Start End Strand Distance 0 chr1 6884776 6890287 - 4141494 1 chr1 9762188 9769453 - 7018906 Actual Chromosome Start End Strand Distance 0 chr1 6884776 6890287 - 4141494 1 chr1 9762188 9769453 - 7018906 Expected Chromosome Start End Strand Distance 0 chr1 6884776 6890287 - 4141494 1 chr1 9762188 9769453 - 7018906 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=2, step=1) Expected index RangeIndex(start=0, stop=2, step=1) index equal [ True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpclto6_q1/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpclto6_q1/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 6884776 6890287 - 4151492 1 chr1 6884776 6890287 - 6884775 2 chr1 9762188 9769453 - 7028904 3 chr1 9762188 9769453 - 9762187 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 9762188 | 9769453 | a | 0 | ... | | chr1 | 9762188 | 9769453 | a | 0 | ... | | chr1 | 6884776 | 6890287 | a | 0 | ... | | chr1 | 6884776 | 6890287 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 4 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 2 chr1 6884776 6890287 - 4151492 3 chr1 6884776 6890287 - 6884775 0 chr1 9762188 9769453 - 7028904 1 chr1 9762188 9769453 - 9762187 df2 Chromosome Start End Strand Distance 0 chr1 6884776 6890287 - 4151492 1 chr1 6884776 6890287 - 6884775 2 chr1 9762188 9769453 - 7028904 3 chr1 9762188 9769453 - 9762187 Actual Chromosome Start End Strand Distance 0 chr1 6884776 6890287 - 4151492 1 chr1 6884776 6890287 - 6884775 2 chr1 9762188 9769453 - 7028904 3 chr1 9762188 9769453 - 9762187 Expected Chromosome Start End Strand Distance 0 chr1 6884776 6890287 - 4151492 1 chr1 6884776 6890287 - 6884775 2 chr1 9762188 9769453 - 7028904 3 chr1 9762188 9769453 - 9762187 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=4, step=1) Expected index RangeIndex(start=0, stop=4, step=1) index equal [ True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp_8k40xe4/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp_8k40xe4/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 6884776 6890287 - 4151492 1 chr1 6884776 6890287 - 6884775 2 chr1 9762188 9769453 - 7028904 3 chr1 9762188 9769453 - 9762187 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 9762188 | 9769453 | a | 0 | ... | | chr1 | 9762188 | 9769453 | a | 0 | ... | | chr1 | 6884776 | 6890287 | a | 0 | ... | | chr1 | 6884776 | 6890287 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 4 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 2 chr1 6884776 6890287 - 4151492 3 chr1 6884776 6890287 - 6884775 0 chr1 9762188 9769453 - 7028904 1 chr1 9762188 9769453 - 9762187 df2 Chromosome Start End Strand Distance 0 chr1 6884776 6890287 - 4151492 1 chr1 6884776 6890287 - 6884775 2 chr1 9762188 9769453 - 7028904 3 chr1 9762188 9769453 - 9762187 Actual Chromosome Start End Strand Distance 0 chr1 6884776 6890287 - 4151492 1 chr1 6884776 6890287 - 6884775 2 chr1 9762188 9769453 - 7028904 3 chr1 9762188 9769453 - 9762187 Expected Chromosome Start End Strand Distance 0 chr1 6884776 6890287 - 4151492 1 chr1 6884776 6890287 - 6884775 2 chr1 9762188 9769453 - 7028904 3 chr1 9762188 9769453 - 9762187 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=4, step=1) Expected index RangeIndex(start=0, stop=4, step=1) index equal [ True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpl63aeg88/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpl63aeg88/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpeddgmilm/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpeddgmilm/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 6884776 6890287 - 6884775 1 chr1 9762188 9769453 - 9762187 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 9762188 | 9769453 | a | 0 | ... | | chr1 | 6884776 | 6890287 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 1 chr1 6884776 6890287 - 6884775 0 chr1 9762188 9769453 - 9762187 df2 Chromosome Start End Strand Distance 0 chr1 6884776 6890287 - 6884775 1 chr1 9762188 9769453 - 9762187 Actual Chromosome Start End Strand Distance 0 chr1 6884776 6890287 - 6884775 1 chr1 9762188 9769453 - 9762187 Expected Chromosome Start End Strand Distance 0 chr1 6884776 6890287 - 6884775 1 chr1 9762188 9769453 - 9762187 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=2, step=1) Expected index RangeIndex(start=0, stop=2, step=1) index equal [ True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp_2pb5kfq/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp_2pb5kfq/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 3429484 3431238 + 755789 1 chr1 7274158 7283167 + 4600463 2 chr1 7550446 7559345 + 4876751 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 7274158 | 7283167 | a | 0 | ... | | chr1 | 3429484 | 3431238 | a | 0 | ... | | chr1 | 7550446 | 7559345 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 3 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 1 chr1 3429484 3431238 + 755789 0 chr1 7274158 7283167 + 4600463 2 chr1 7550446 7559345 + 4876751 df2 Chromosome Start End Strand Distance 0 chr1 3429484 3431238 + 755789 1 chr1 7274158 7283167 + 4600463 2 chr1 7550446 7559345 + 4876751 Actual Chromosome Start End Strand Distance 0 chr1 3429484 3431238 + 755789 1 chr1 7274158 7283167 + 4600463 2 chr1 7550446 7559345 + 4876751 Expected Chromosome Start End Strand Distance 0 chr1 3429484 3431238 + 755789 1 chr1 7274158 7283167 + 4600463 2 chr1 7550446 7559345 + 4876751 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=3, step=1) Expected index RangeIndex(start=0, stop=3, step=1) index equal [ True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpbp42pbv1/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpbp42pbv1/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpvbjxl8jq/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpvbjxl8jq/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpje2032zg/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpje2032zg/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 7274158 7274159 + 7274157 1 chr1 7274158 7274159 + 7274157 2 chr1 7274158 7274159 + 7274157 3 chr1 7274158 7274159 + 7274157 4 chr1 7274158 7274159 + 7274157 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 7274158 | 7274159 | a | 0 | ... | | chr1 | 7274158 | 7274159 | a | 0 | ... | | chr1 | 7274158 | 7274159 | a | 0 | ... | | chr1 | 7274158 | 7274159 | a | 0 | ... | | chr1 | 7274158 | 7274159 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 5 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 7274158 7274159 + 7274157 1 chr1 7274158 7274159 + 7274157 2 chr1 7274158 7274159 + 7274157 3 chr1 7274158 7274159 + 7274157 4 chr1 7274158 7274159 + 7274157 df2 Chromosome Start End Strand Distance 0 chr1 7274158 7274159 + 7274157 1 chr1 7274158 7274159 + 7274157 2 chr1 7274158 7274159 + 7274157 3 chr1 7274158 7274159 + 7274157 4 chr1 7274158 7274159 + 7274157 Actual Chromosome Start End Strand Distance 0 chr1 7274158 7274159 + 7274157 1 chr1 7274158 7274159 + 7274157 2 chr1 7274158 7274159 + 7274157 3 chr1 7274158 7274159 + 7274157 4 chr1 7274158 7274159 + 7274157 Expected Chromosome Start End Strand Distance 0 chr1 7274158 7274159 + 7274157 1 chr1 7274158 7274159 + 7274157 2 chr1 7274158 7274159 + 7274157 3 chr1 7274158 7274159 + 7274157 4 chr1 7274158 7274159 + 7274157 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=5, step=1) Expected index RangeIndex(start=0, stop=5, step=1) index equal [ True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpd4ktk12e/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpd4ktk12e/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 1 2 + 2 4 chr1 2 3 + 1 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 1 | 2 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 3 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 1 2 + 2 1 chr1 2 3 + 1 2 chr1 2 3 + 1 df2 Chromosome Start End Strand Distance 0 chr1 1 2 + 2 4 chr1 2 3 + 1 Actual Chromosome Start End Strand Distance 0 chr1 1 2 + 2 1 chr1 2 3 + 1 2 chr1 2 3 + 1 Expected Chromosome Start End Strand Distance 0 chr1 1 2 + 2 1 chr1 2 3 + 1 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=3, step=1) Expected index RangeIndex(start=0, stop=2, step=1) ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp94rpip0r/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp94rpip0r/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 1 2 + 2 4 chr1 2 3 + 1 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 1 | 2 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 3 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 1 2 + 2 1 chr1 2 3 + 1 2 chr1 2 3 + 1 df2 Chromosome Start End Strand Distance 0 chr1 1 2 + 2 4 chr1 2 3 + 1 Actual Chromosome Start End Strand Distance 0 chr1 1 2 + 2 1 chr1 2 3 + 1 2 chr1 2 3 + 1 Expected Chromosome Start End Strand Distance 0 chr1 1 2 + 2 1 chr1 2 3 + 1 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=3, step=1) Expected index RangeIndex(start=0, stop=2, step=1) ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp711nqhzh/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp711nqhzh/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 1 2 + 2 4 chr1 2 3 + 1 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 1 | 2 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 3 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 1 2 + 2 1 chr1 2 3 + 1 2 chr1 2 3 + 1 df2 Chromosome Start End Strand Distance 0 chr1 1 2 + 2 4 chr1 2 3 + 1 Actual Chromosome Start End Strand Distance 0 chr1 1 2 + 2 1 chr1 2 3 + 1 2 chr1 2 3 + 1 Expected Chromosome Start End Strand Distance 0 chr1 1 2 + 2 1 chr1 2 3 + 1 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=3, step=1) Expected index RangeIndex(start=0, stop=2, step=1) ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpehdo421o/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpehdo421o/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 1 2 + 2 4 chr1 2 3 + 1 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 1 | 2 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 3 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 1 2 + 2 1 chr1 2 3 + 1 2 chr1 2 3 + 1 df2 Chromosome Start End Strand Distance 0 chr1 1 2 + 2 4 chr1 2 3 + 1 Actual Chromosome Start End Strand Distance 0 chr1 1 2 + 2 1 chr1 2 3 + 1 2 chr1 2 3 + 1 Expected Chromosome Start End Strand Distance 0 chr1 1 2 + 2 1 chr1 2 3 + 1 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=3, step=1) Expected index RangeIndex(start=0, stop=2, step=1) ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp2ehm5tc0/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp2ehm5tc0/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 1 2 + 2 4 chr1 2 3 + 1 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 1 | 2 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 3 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 1 2 + 2 1 chr1 2 3 + 1 2 chr1 2 3 + 1 df2 Chromosome Start End Strand Distance 0 chr1 1 2 + 2 4 chr1 2 3 + 1 Actual Chromosome Start End Strand Distance 0 chr1 1 2 + 2 1 chr1 2 3 + 1 2 chr1 2 3 + 1 Expected Chromosome Start End Strand Distance 0 chr1 1 2 + 2 1 chr1 2 3 + 1 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=3, step=1) Expected index RangeIndex(start=0, stop=2, step=1) ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmppp5xqhjd/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmppp5xqhjd/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 1 2 + 2 4 chr1 2 3 + 1 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 1 | 2 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 3 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 1 2 + 2 1 chr1 2 3 + 1 2 chr1 2 3 + 1 df2 Chromosome Start End Strand Distance 0 chr1 1 2 + 2 4 chr1 2 3 + 1 Actual Chromosome Start End Strand Distance 0 chr1 1 2 + 2 1 chr1 2 3 + 1 2 chr1 2 3 + 1 Expected Chromosome Start End Strand Distance 0 chr1 1 2 + 2 1 chr1 2 3 + 1 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=3, step=1) Expected index RangeIndex(start=0, stop=2, step=1) ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpqm6pczsn/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpqm6pczsn/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 5 chr1 2 3 - 1 6 chr1 2 3 - 1 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 2 3 - 1 1 chr1 2 3 - 1 df2 Chromosome Start End Strand Distance 5 chr1 2 3 - 1 6 chr1 2 3 - 1 Actual Chromosome Start End Strand Distance 0 chr1 2 3 - 1 1 chr1 2 3 - 1 Expected Chromosome Start End Strand Distance 0 chr1 2 3 - 1 1 chr1 2 3 - 1 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=2, step=1) Expected index RangeIndex(start=0, stop=2, step=1) index equal [ True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp2q9p7nh5/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp2q9p7nh5/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpxocckxr9/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpxocckxr9/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 1 2 + 2 4 chr1 2 3 + 1 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 1 | 2 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 3 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 1 2 + 2 1 chr1 2 3 + 1 2 chr1 2 3 + 1 df2 Chromosome Start End Strand Distance 0 chr1 1 2 + 2 4 chr1 2 3 + 1 Actual Chromosome Start End Strand Distance 0 chr1 1 2 + 2 1 chr1 2 3 + 1 2 chr1 2 3 + 1 Expected Chromosome Start End Strand Distance 0 chr1 1 2 + 2 1 chr1 2 3 + 1 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=3, step=1) Expected index RangeIndex(start=0, stop=2, step=1) ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpd64vnqbm/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpd64vnqbm/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 5 chr1 2 3 - 1 6 chr1 2 3 - 1 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 2 3 - 1 1 chr1 2 3 - 1 df2 Chromosome Start End Strand Distance 5 chr1 2 3 - 1 6 chr1 2 3 - 1 Actual Chromosome Start End Strand Distance 0 chr1 2 3 - 1 1 chr1 2 3 - 1 Expected Chromosome Start End Strand Distance 0 chr1 2 3 - 1 1 chr1 2 3 - 1 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=2, step=1) Expected index RangeIndex(start=0, stop=2, step=1) index equal [ True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpz32toli9/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpz32toli9/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 5 chr1 2 3 - 1 6 chr1 2 3 - 1 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 2 3 - 1 1 chr1 2 3 - 1 df2 Chromosome Start End Strand Distance 5 chr1 2 3 - 1 6 chr1 2 3 - 1 Actual Chromosome Start End Strand Distance 0 chr1 2 3 - 1 1 chr1 2 3 - 1 Expected Chromosome Start End Strand Distance 0 chr1 2 3 - 1 1 chr1 2 3 - 1 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=2, step=1) Expected index RangeIndex(start=0, stop=2, step=1) index equal [ True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpb556rsmy/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpb556rsmy/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 5 chr1 2 3 - 1 6 chr1 2 3 - 1 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 2 3 - 1 1 chr1 2 3 - 1 df2 Chromosome Start End Strand Distance 5 chr1 2 3 - 1 6 chr1 2 3 - 1 Actual Chromosome Start End Strand Distance 0 chr1 2 3 - 1 1 chr1 2 3 - 1 Expected Chromosome Start End Strand Distance 0 chr1 2 3 - 1 1 chr1 2 3 - 1 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=2, step=1) Expected index RangeIndex(start=0, stop=2, step=1) index equal [ True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpxahx5_ak/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpxahx5_ak/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 4 chr1 2 3 + 1 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 2 | 3 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 2 3 + 1 df2 Chromosome Start End Strand Distance 4 chr1 2 3 + 1 Actual Chromosome Start End Strand Distance 0 chr1 2 3 + 1 Expected Chromosome Start End Strand Distance 0 chr1 2 3 + 1 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=1, step=1) Expected index RangeIndex(start=0, stop=1, step=1) index equal [ True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpzg02_26w/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpzg02_26w/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpg4w_4wct/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpg4w_4wct/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmptkx_pt_s/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmptkx_pt_s/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 1 2 + 2 4 chr1 2 3 + 1 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 1 | 2 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 3 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 1 2 + 2 1 chr1 2 3 + 1 2 chr1 2 3 + 1 df2 Chromosome Start End Strand Distance 0 chr1 1 2 + 2 4 chr1 2 3 + 1 Actual Chromosome Start End Strand Distance 0 chr1 1 2 + 2 1 chr1 2 3 + 1 2 chr1 2 3 + 1 Expected Chromosome Start End Strand Distance 0 chr1 1 2 + 2 1 chr1 2 3 + 1 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=3, step=1) Expected index RangeIndex(start=0, stop=2, step=1) ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp8zzbdfdo/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp8zzbdfdo/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmprqt6n9h9/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmprqt6n9h9/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 1 2 + 2 4 chr1 2 3 + 1 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 1 | 2 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 3 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 1 2 + 2 1 chr1 2 3 + 1 2 chr1 2 3 + 1 df2 Chromosome Start End Strand Distance 0 chr1 1 2 + 2 4 chr1 2 3 + 1 Actual Chromosome Start End Strand Distance 0 chr1 1 2 + 2 1 chr1 2 3 + 1 2 chr1 2 3 + 1 Expected Chromosome Start End Strand Distance 0 chr1 1 2 + 2 1 chr1 2 3 + 1 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=3, step=1) Expected index RangeIndex(start=0, stop=2, step=1) ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpekndavjt/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpekndavjt/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpiv77it0a/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpiv77it0a/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp6uf7j6cq/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp6uf7j6cq/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp3rskoyny/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp3rskoyny/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp4eduw95y/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp4eduw95y/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpa7in44dc/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpa7in44dc/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 1 2 + 2 4 chr1 2 3 + 1 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 1 | 2 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 3 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 1 2 + 2 1 chr1 2 3 + 1 2 chr1 2 3 + 1 df2 Chromosome Start End Strand Distance 0 chr1 1 2 + 2 4 chr1 2 3 + 1 Actual Chromosome Start End Strand Distance 0 chr1 1 2 + 2 1 chr1 2 3 + 1 2 chr1 2 3 + 1 Expected Chromosome Start End Strand Distance 0 chr1 1 2 + 2 1 chr1 2 3 + 1 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=3, step=1) Expected index RangeIndex(start=0, stop=2, step=1) ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpm9hf3b7u/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpm9hf3b7u/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 1 2 + 2 4 chr1 2 3 + 1 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 1 | 2 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 3 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 1 2 + 2 1 chr1 2 3 + 1 2 chr1 2 3 + 1 df2 Chromosome Start End Strand Distance 0 chr1 1 2 + 2 4 chr1 2 3 + 1 Actual Chromosome Start End Strand Distance 0 chr1 1 2 + 2 1 chr1 2 3 + 1 2 chr1 2 3 + 1 Expected Chromosome Start End Strand Distance 0 chr1 1 2 + 2 1 chr1 2 3 + 1 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=3, step=1) Expected index RangeIndex(start=0, stop=2, step=1) ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpjbl6jign/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpjbl6jign/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmptarn8ptw/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmptarn8ptw/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 1 2 + 2 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 1 | 2 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 1 2 + 2 df2 Chromosome Start End Strand Distance 0 chr1 1 2 + 2 Actual Chromosome Start End Strand Distance 0 chr1 1 2 + 2 Expected Chromosome Start End Strand Distance 0 chr1 1 2 + 2 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=1, step=1) Expected index RangeIndex(start=0, stop=1, step=1) index equal [ True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp2enbcaxm/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp2enbcaxm/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpxot9f383/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpxot9f383/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp2kxyjauu/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp2kxyjauu/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpnxt5s9q9/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpnxt5s9q9/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpcwi0jgak/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpcwi0jgak/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpyyph3rm7/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpyyph3rm7/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp0ig81umb/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp0ig81umb/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpk0jzrkiq/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpk0jzrkiq/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpx3mhczbp/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpx3mhczbp/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpgus6tgfd/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpgus6tgfd/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpd7dpkpir/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpd7dpkpir/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 5 chr1 2 3 - 1 6 chr1 2 3 - 1 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 2 3 - 1 1 chr1 2 3 - 1 df2 Chromosome Start End Strand Distance 5 chr1 2 3 - 1 6 chr1 2 3 - 1 Actual Chromosome Start End Strand Distance 0 chr1 2 3 - 1 1 chr1 2 3 - 1 Expected Chromosome Start End Strand Distance 0 chr1 2 3 - 1 1 chr1 2 3 - 1 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=2, step=1) Expected index RangeIndex(start=0, stop=2, step=1) index equal [ True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp9kk_rfu2/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp9kk_rfu2/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpwfqhacp7/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpwfqhacp7/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpw831nvuk/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpw831nvuk/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 5 chr1 2 3 - 1 6 chr1 2 3 - 1 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 2 3 - 1 1 chr1 2 3 - 1 df2 Chromosome Start End Strand Distance 5 chr1 2 3 - 1 6 chr1 2 3 - 1 Actual Chromosome Start End Strand Distance 0 chr1 2 3 - 1 1 chr1 2 3 - 1 Expected Chromosome Start End Strand Distance 0 chr1 2 3 - 1 1 chr1 2 3 - 1 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=2, step=1) Expected index RangeIndex(start=0, stop=2, step=1) index equal [ True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp1k1tloow/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp1k1tloow/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 4 chr1 2 3 + 1 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 2 | 3 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 2 3 + 1 df2 Chromosome Start End Strand Distance 4 chr1 2 3 + 1 Actual Chromosome Start End Strand Distance 0 chr1 2 3 + 1 Expected Chromosome Start End Strand Distance 0 chr1 2 3 + 1 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=1, step=1) Expected index RangeIndex(start=0, stop=1, step=1) index equal [ True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmps877xfvt/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmps877xfvt/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmprorksoew/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmprorksoew/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 6 chr1 3 4 + 2 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 3 | 4 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 3 4 + 2 df2 Chromosome Start End Strand Distance 6 chr1 3 4 + 2 Actual Chromosome Start End Strand Distance 0 chr1 3 4 + 2 Expected Chromosome Start End Strand Distance 0 chr1 3 4 + 2 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=1, step=1) Expected index RangeIndex(start=0, stop=1, step=1) index equal [ True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp5k78zjn4/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp5k78zjn4/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 1 2 + 2 4 chr1 2 3 + 1 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 1 | 2 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 3 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 1 2 + 2 1 chr1 2 3 + 1 2 chr1 2 3 + 1 df2 Chromosome Start End Strand Distance 0 chr1 1 2 + 2 4 chr1 2 3 + 1 Actual Chromosome Start End Strand Distance 0 chr1 1 2 + 2 1 chr1 2 3 + 1 2 chr1 2 3 + 1 Expected Chromosome Start End Strand Distance 0 chr1 1 2 + 2 1 chr1 2 3 + 1 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=3, step=1) Expected index RangeIndex(start=0, stop=2, step=1) ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpw5ebr998/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpw5ebr998/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 1 2 + 2 4 chr1 2 3 + 1 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 1 | 2 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 3 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 1 2 + 2 1 chr1 2 3 + 1 2 chr1 2 3 + 1 df2 Chromosome Start End Strand Distance 0 chr1 1 2 + 2 4 chr1 2 3 + 1 Actual Chromosome Start End Strand Distance 0 chr1 1 2 + 2 1 chr1 2 3 + 1 2 chr1 2 3 + 1 Expected Chromosome Start End Strand Distance 0 chr1 1 2 + 2 1 chr1 2 3 + 1 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=3, step=1) Expected index RangeIndex(start=0, stop=2, step=1) ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmphp4eh4q8/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmphp4eh4q8/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 1 2 + 2 4 chr1 2 3 + 1 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 1 | 2 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 3 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 1 2 + 2 1 chr1 2 3 + 1 2 chr1 2 3 + 1 df2 Chromosome Start End Strand Distance 0 chr1 1 2 + 2 4 chr1 2 3 + 1 Actual Chromosome Start End Strand Distance 0 chr1 1 2 + 2 1 chr1 2 3 + 1 2 chr1 2 3 + 1 Expected Chromosome Start End Strand Distance 0 chr1 1 2 + 2 1 chr1 2 3 + 1 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=3, step=1) Expected index RangeIndex(start=0, stop=2, step=1) ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmprchr82ix/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmprchr82ix/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 1 2 + 2 4 chr1 2 3 + 1 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 1 | 2 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 3 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 1 2 + 2 1 chr1 2 3 + 1 2 chr1 2 3 + 1 df2 Chromosome Start End Strand Distance 0 chr1 1 2 + 2 4 chr1 2 3 + 1 Actual Chromosome Start End Strand Distance 0 chr1 1 2 + 2 1 chr1 2 3 + 1 2 chr1 2 3 + 1 Expected Chromosome Start End Strand Distance 0 chr1 1 2 + 2 1 chr1 2 3 + 1 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=3, step=1) Expected index RangeIndex(start=0, stop=2, step=1) ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmposqwxg6b/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmposqwxg6b/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 1 2 + 2 4 chr1 2 3 + 1 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 1 | 2 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 3 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 1 2 + 2 1 chr1 2 3 + 1 2 chr1 2 3 + 1 df2 Chromosome Start End Strand Distance 0 chr1 1 2 + 2 4 chr1 2 3 + 1 Actual Chromosome Start End Strand Distance 0 chr1 1 2 + 2 1 chr1 2 3 + 1 2 chr1 2 3 + 1 Expected Chromosome Start End Strand Distance 0 chr1 1 2 + 2 1 chr1 2 3 + 1 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=3, step=1) Expected index RangeIndex(start=0, stop=2, step=1) ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp_6q14eu8/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp_6q14eu8/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 5 chr1 2 3 - 1 6 chr1 2 3 - 1 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 2 3 - 1 1 chr1 2 3 - 1 df2 Chromosome Start End Strand Distance 5 chr1 2 3 - 1 6 chr1 2 3 - 1 Actual Chromosome Start End Strand Distance 0 chr1 2 3 - 1 1 chr1 2 3 - 1 Expected Chromosome Start End Strand Distance 0 chr1 2 3 - 1 1 chr1 2 3 - 1 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=2, step=1) Expected index RangeIndex(start=0, stop=2, step=1) index equal [ True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp3h4bhqi5/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp3h4bhqi5/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 4 chr1 2 3 + 1 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 2 | 3 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 2 3 + 1 df2 Chromosome Start End Strand Distance 4 chr1 2 3 + 1 Actual Chromosome Start End Strand Distance 0 chr1 2 3 + 1 Expected Chromosome Start End Strand Distance 0 chr1 2 3 + 1 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=1, step=1) Expected index RangeIndex(start=0, stop=1, step=1) index equal [ True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp9i_db3a3/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp9i_db3a3/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 4 chr1 2 3 + 1 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 2 | 3 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 2 3 + 1 df2 Chromosome Start End Strand Distance 4 chr1 2 3 + 1 Actual Chromosome Start End Strand Distance 0 chr1 2 3 + 1 Expected Chromosome Start End Strand Distance 0 chr1 2 3 + 1 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=1, step=1) Expected index RangeIndex(start=0, stop=1, step=1) index equal [ True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp0zcm6yf2/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp0zcm6yf2/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 5 chr1 2 3 - 1 6 chr1 2 3 - 1 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 2 3 - 1 1 chr1 2 3 - 1 df2 Chromosome Start End Strand Distance 5 chr1 2 3 - 1 6 chr1 2 3 - 1 Actual Chromosome Start End Strand Distance 0 chr1 2 3 - 1 1 chr1 2 3 - 1 Expected Chromosome Start End Strand Distance 0 chr1 2 3 - 1 1 chr1 2 3 - 1 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=2, step=1) Expected index RangeIndex(start=0, stop=2, step=1) index equal [ True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp78dpujdo/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp78dpujdo/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 5 chr1 2 3 - 1 6 chr1 2 3 - 1 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 2 3 - 1 1 chr1 2 3 - 1 df2 Chromosome Start End Strand Distance 5 chr1 2 3 - 1 6 chr1 2 3 - 1 Actual Chromosome Start End Strand Distance 0 chr1 2 3 - 1 1 chr1 2 3 - 1 Expected Chromosome Start End Strand Distance 0 chr1 2 3 - 1 1 chr1 2 3 - 1 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=2, step=1) Expected index RangeIndex(start=0, stop=2, step=1) index equal [ True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpv040fb72/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpv040fb72/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp0jskt8p5/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp0jskt8p5/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 5 chr1 2 3 - 1 6 chr1 2 3 - 1 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 2 3 - 1 1 chr1 2 3 - 1 df2 Chromosome Start End Strand Distance 5 chr1 2 3 - 1 6 chr1 2 3 - 1 Actual Chromosome Start End Strand Distance 0 chr1 2 3 - 1 1 chr1 2 3 - 1 Expected Chromosome Start End Strand Distance 0 chr1 2 3 - 1 1 chr1 2 3 - 1 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=2, step=1) Expected index RangeIndex(start=0, stop=2, step=1) index equal [ True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpsef1o2f3/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpsef1o2f3/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpm13qg1fq/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpm13qg1fq/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpn51ay44z/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpn51ay44z/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpfso02wkt/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpfso02wkt/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp22svq0d7/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp22svq0d7/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpd4ko3o5v/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpd4ko3o5v/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpxl1uh_t5/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpxl1uh_t5/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp2psfdugf/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp2psfdugf/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp4xk0zuxq/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp4xk0zuxq/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpupjzsvrz/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpupjzsvrz/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpbeudw7fn/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpbeudw7fn/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 1 2 + 2 4 chr1 2 3 + 1 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 1 | 2 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 3 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 1 2 + 2 1 chr1 2 3 + 1 2 chr1 2 3 + 1 df2 Chromosome Start End Strand Distance 0 chr1 1 2 + 2 4 chr1 2 3 + 1 Actual Chromosome Start End Strand Distance 0 chr1 1 2 + 2 1 chr1 2 3 + 1 2 chr1 2 3 + 1 Expected Chromosome Start End Strand Distance 0 chr1 1 2 + 2 1 chr1 2 3 + 1 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=3, step=1) Expected index RangeIndex(start=0, stop=2, step=1) ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp4j6qqnpn/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp4j6qqnpn/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 1 2 + 2 4 chr1 2 3 + 1 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 1 | 2 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 3 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 1 2 + 2 1 chr1 2 3 + 1 2 chr1 2 3 + 1 df2 Chromosome Start End Strand Distance 0 chr1 1 2 + 2 4 chr1 2 3 + 1 Actual Chromosome Start End Strand Distance 0 chr1 1 2 + 2 1 chr1 2 3 + 1 2 chr1 2 3 + 1 Expected Chromosome Start End Strand Distance 0 chr1 1 2 + 2 1 chr1 2 3 + 1 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=3, step=1) Expected index RangeIndex(start=0, stop=2, step=1) ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpf8c80x1g/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpf8c80x1g/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 4 chr1 2 3 + 1 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 2 | 3 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 2 3 + 1 df2 Chromosome Start End Strand Distance 4 chr1 2 3 + 1 Actual Chromosome Start End Strand Distance 0 chr1 2 3 + 1 Expected Chromosome Start End Strand Distance 0 chr1 2 3 + 1 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=1, step=1) Expected index RangeIndex(start=0, stop=1, step=1) index equal [ True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpc1fnqql_/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpc1fnqql_/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpcxt2w7ll/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpcxt2w7ll/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 4 chr1 2 3 + 1 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 2 3 + 1 1 chr1 2 3 + 1 df2 Chromosome Start End Strand Distance 4 chr1 2 3 + 1 Actual Chromosome Start End Strand Distance 0 chr1 2 3 + 1 1 chr1 2 3 + 1 Expected Chromosome Start End Strand Distance 0 chr1 2 3 + 1 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=2, step=1) Expected index RangeIndex(start=0, stop=1, step=1) ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmprj2yao_6/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmprj2yao_6/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp9cxamo5r/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp9cxamo5r/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpp866pc81/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpp866pc81/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 4 chr1 2 3 + 1 5 chr1 2 3 + 1 6 chr1 2 3 + 1 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 3 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 2 3 + 1 1 chr1 2 3 + 1 2 chr1 2 3 + 1 df2 Chromosome Start End Strand Distance 4 chr1 2 3 + 1 5 chr1 2 3 + 1 6 chr1 2 3 + 1 Actual Chromosome Start End Strand Distance 0 chr1 2 3 + 1 1 chr1 2 3 + 1 2 chr1 2 3 + 1 Expected Chromosome Start End Strand Distance 0 chr1 2 3 + 1 1 chr1 2 3 + 1 2 chr1 2 3 + 1 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=3, step=1) Expected index RangeIndex(start=0, stop=3, step=1) index equal [ True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmprfdzfsu9/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmprfdzfsu9/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpyyow_m46/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpyyow_m46/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp9sc2h_21/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp9sc2h_21/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 3 chr1 2 3 + 1 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 2 3 + 1 1 chr1 2 3 + 1 df2 Chromosome Start End Strand Distance 3 chr1 2 3 + 1 Actual Chromosome Start End Strand Distance 0 chr1 2 3 + 1 1 chr1 2 3 + 1 Expected Chromosome Start End Strand Distance 0 chr1 2 3 + 1 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=2, step=1) Expected index RangeIndex(start=0, stop=1, step=1) ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp79fzctng/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp79fzctng/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 2 chr1 2 3 + 1 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 2 3 + 1 1 chr1 2 3 + 1 df2 Chromosome Start End Strand Distance 2 chr1 2 3 + 1 Actual Chromosome Start End Strand Distance 0 chr1 2 3 + 1 1 chr1 2 3 + 1 Expected Chromosome Start End Strand Distance 0 chr1 2 3 + 1 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=2, step=1) Expected index RangeIndex(start=0, stop=1, step=1) ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpewd07346/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpewd07346/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 1 chr1 2 3 + 1 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 2 3 + 1 1 chr1 2 3 + 1 df2 Chromosome Start End Strand Distance 1 chr1 2 3 + 1 Actual Chromosome Start End Strand Distance 0 chr1 2 3 + 1 1 chr1 2 3 + 1 Expected Chromosome Start End Strand Distance 0 chr1 2 3 + 1 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=2, step=1) Expected index RangeIndex(start=0, stop=1, step=1) ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp5k2cpl2c/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp5k2cpl2c/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 2 3 + 1 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 2 3 + 1 1 chr1 2 3 + 1 df2 Chromosome Start End Strand Distance 0 chr1 2 3 + 1 Actual Chromosome Start End Strand Distance 0 chr1 2 3 + 1 1 chr1 2 3 + 1 Expected Chromosome Start End Strand Distance 0 chr1 2 3 + 1 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=2, step=1) Expected index RangeIndex(start=0, stop=1, step=1) ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpq11lqtow/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpq11lqtow/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 2 3 + 1 1 chr1 2 3 + 1 2 chr1 2 3 + 1 3 chr1 2 3 + 1 4 chr1 2 3 + 1 5 chr1 2 3 + 1 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 6 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 2 3 + 1 1 chr1 2 3 + 1 2 chr1 2 3 + 1 3 chr1 2 3 + 1 4 chr1 2 3 + 1 5 chr1 2 3 + 1 df2 Chromosome Start End Strand Distance 0 chr1 2 3 + 1 1 chr1 2 3 + 1 2 chr1 2 3 + 1 3 chr1 2 3 + 1 4 chr1 2 3 + 1 5 chr1 2 3 + 1 Actual Chromosome Start End Strand Distance 0 chr1 2 3 + 1 1 chr1 2 3 + 1 2 chr1 2 3 + 1 3 chr1 2 3 + 1 4 chr1 2 3 + 1 5 chr1 2 3 + 1 Expected Chromosome Start End Strand Distance 0 chr1 2 3 + 1 1 chr1 2 3 + 1 2 chr1 2 3 + 1 3 chr1 2 3 + 1 4 chr1 2 3 + 1 5 chr1 2 3 + 1 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=6, step=1) Expected index RangeIndex(start=0, stop=6, step=1) index equal [ True True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpfp93i47b/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpfp93i47b/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmprp8xy6d3/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmprp8xy6d3/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpn0bgyvik/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpn0bgyvik/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp4tqjf80c/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp4tqjf80c/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp6f7l06ex/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp6f7l06ex/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpxbxexd23/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpxbxexd23/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpko1dogks/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpko1dogks/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpx8tqrxd1/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpx8tqrxd1/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpb_tt8s7a/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpb_tt8s7a/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpq7tr6c0u/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpq7tr6c0u/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp47b1exwh/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp47b1exwh/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 2 3 + 1 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 2 3 + 1 1 chr1 2 3 + 1 df2 Chromosome Start End Strand Distance 0 chr1 2 3 + 1 Actual Chromosome Start End Strand Distance 0 chr1 2 3 + 1 1 chr1 2 3 + 1 Expected Chromosome Start End Strand Distance 0 chr1 2 3 + 1 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=2, step=1) Expected index RangeIndex(start=0, stop=1, step=1) ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpis_1tx_j/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpis_1tx_j/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp1iitu_n1/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp1iitu_n1/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpb3z0ivbl/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpb3z0ivbl/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpwrg92vua/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpwrg92vua/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpr0ghzt5q/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpr0ghzt5q/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpgt3zbnr1/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpgt3zbnr1/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpc8af60e2/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpc8af60e2/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpge3szo6t/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpge3szo6t/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpd4xs3l2l/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpd4xs3l2l/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpcya3mza5/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpcya3mza5/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpgylyif4g/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpgylyif4g/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmps1f66rkd/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmps1f66rkd/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpf1ux4xtd/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpf1ux4xtd/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpw9yp8dtw/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpw9yp8dtw/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp0cnzq3fn/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp0cnzq3fn/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpt88hx1q0/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpt88hx1q0/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpr05zze4l/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpr05zze4l/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp_g92g8az/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp_g92g8az/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp51nqde3r/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp51nqde3r/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp4ehe32y_/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp4ehe32y_/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpgh3b26ba/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpgh3b26ba/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 1 2 + 23 1 chr1 1 2 + 23 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 1 | 2 | a | 0 | ... | | chr1 | 1 | 2 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 1 2 + 23 1 chr1 1 2 + 23 df2 Chromosome Start End Strand Distance 0 chr1 1 2 + 23 1 chr1 1 2 + 23 Actual Chromosome Start End Strand Distance 0 chr1 1 2 + 23 1 chr1 1 2 + 23 Expected Chromosome Start End Strand Distance 0 chr1 1 2 + 23 1 chr1 1 2 + 23 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=2, step=1) Expected index RangeIndex(start=0, stop=2, step=1) index equal [ True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp9j7v7mt4/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp9j7v7mt4/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 1 chr1 2 3 - 1 2 chr1 2 3 - 1 3 chr1 2 3 - 1 4 chr1 2 3 - 1 5 chr1 2 3 - 1 6 chr1 2 3 - 1 7 chr1 2 3 - 1 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 7 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 2 3 - 1 1 chr1 2 3 - 1 2 chr1 2 3 - 1 3 chr1 2 3 - 1 4 chr1 2 3 - 1 5 chr1 2 3 - 1 6 chr1 2 3 - 1 df2 Chromosome Start End Strand Distance 1 chr1 2 3 - 1 2 chr1 2 3 - 1 3 chr1 2 3 - 1 4 chr1 2 3 - 1 5 chr1 2 3 - 1 6 chr1 2 3 - 1 7 chr1 2 3 - 1 Actual Chromosome Start End Strand Distance 0 chr1 2 3 - 1 1 chr1 2 3 - 1 2 chr1 2 3 - 1 3 chr1 2 3 - 1 4 chr1 2 3 - 1 5 chr1 2 3 - 1 6 chr1 2 3 - 1 Expected Chromosome Start End Strand Distance 0 chr1 2 3 - 1 1 chr1 2 3 - 1 2 chr1 2 3 - 1 3 chr1 2 3 - 1 4 chr1 2 3 - 1 5 chr1 2 3 - 1 6 chr1 2 3 - 1 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=7, step=1) Expected index RangeIndex(start=0, stop=7, step=1) index equal [ True True True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp7fsx6rj5/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp7fsx6rj5/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 2 3 + 1 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 2 3 + 1 1 chr1 2 3 + 1 df2 Chromosome Start End Strand Distance 0 chr1 2 3 + 1 Actual Chromosome Start End Strand Distance 0 chr1 2 3 + 1 1 chr1 2 3 + 1 Expected Chromosome Start End Strand Distance 0 chr1 2 3 + 1 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=2, step=1) Expected index RangeIndex(start=0, stop=1, step=1) ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp7op_duln/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp7op_duln/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 1 chr1 2 3 - 1 2 chr1 2 3 - 1 3 chr1 2 3 - 1 4 chr1 2 3 - 1 5 chr1 2 3 - 1 6 chr1 2 3 - 1 7 chr1 2 3 - 1 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 7 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 2 3 - 1 1 chr1 2 3 - 1 2 chr1 2 3 - 1 3 chr1 2 3 - 1 4 chr1 2 3 - 1 5 chr1 2 3 - 1 6 chr1 2 3 - 1 df2 Chromosome Start End Strand Distance 1 chr1 2 3 - 1 2 chr1 2 3 - 1 3 chr1 2 3 - 1 4 chr1 2 3 - 1 5 chr1 2 3 - 1 6 chr1 2 3 - 1 7 chr1 2 3 - 1 Actual Chromosome Start End Strand Distance 0 chr1 2 3 - 1 1 chr1 2 3 - 1 2 chr1 2 3 - 1 3 chr1 2 3 - 1 4 chr1 2 3 - 1 5 chr1 2 3 - 1 6 chr1 2 3 - 1 Expected Chromosome Start End Strand Distance 0 chr1 2 3 - 1 1 chr1 2 3 - 1 2 chr1 2 3 - 1 3 chr1 2 3 - 1 4 chr1 2 3 - 1 5 chr1 2 3 - 1 6 chr1 2 3 - 1 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=7, step=1) Expected index RangeIndex(start=0, stop=7, step=1) index equal [ True True True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpb4rtfltl/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpb4rtfltl/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 1 chr1 2 3 - 1 2 chr1 2 3 - 1 3 chr1 2 3 - 1 4 chr1 2 3 - 1 5 chr1 2 3 - 1 6 chr1 2 3 - 1 7 chr1 2 3 - 1 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 7 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 2 3 - 1 1 chr1 2 3 - 1 2 chr1 2 3 - 1 3 chr1 2 3 - 1 4 chr1 2 3 - 1 5 chr1 2 3 - 1 6 chr1 2 3 - 1 df2 Chromosome Start End Strand Distance 1 chr1 2 3 - 1 2 chr1 2 3 - 1 3 chr1 2 3 - 1 4 chr1 2 3 - 1 5 chr1 2 3 - 1 6 chr1 2 3 - 1 7 chr1 2 3 - 1 Actual Chromosome Start End Strand Distance 0 chr1 2 3 - 1 1 chr1 2 3 - 1 2 chr1 2 3 - 1 3 chr1 2 3 - 1 4 chr1 2 3 - 1 5 chr1 2 3 - 1 6 chr1 2 3 - 1 Expected Chromosome Start End Strand Distance 0 chr1 2 3 - 1 1 chr1 2 3 - 1 2 chr1 2 3 - 1 3 chr1 2 3 - 1 4 chr1 2 3 - 1 5 chr1 2 3 - 1 6 chr1 2 3 - 1 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=7, step=1) Expected index RangeIndex(start=0, stop=7, step=1) index equal [ True True True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp3orkewpp/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp3orkewpp/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 2 3 + 1 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 2 | 3 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 2 3 + 1 df2 Chromosome Start End Strand Distance 0 chr1 2 3 + 1 Actual Chromosome Start End Strand Distance 0 chr1 2 3 + 1 Expected Chromosome Start End Strand Distance 0 chr1 2 3 + 1 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=1, step=1) Expected index RangeIndex(start=0, stop=1, step=1) index equal [ True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpg6i399qs/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpg6i399qs/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 2 3 + 1 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 2 3 + 1 1 chr1 2 3 + 1 df2 Chromosome Start End Strand Distance 0 chr1 2 3 + 1 Actual Chromosome Start End Strand Distance 0 chr1 2 3 + 1 1 chr1 2 3 + 1 Expected Chromosome Start End Strand Distance 0 chr1 2 3 + 1 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=2, step=1) Expected index RangeIndex(start=0, stop=1, step=1) ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp9i3lk6rp/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp9i3lk6rp/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 7 chr1 2 3 - 1 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 2 | 3 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 2 3 - 1 df2 Chromosome Start End Strand Distance 7 chr1 2 3 - 1 Actual Chromosome Start End Strand Distance 0 chr1 2 3 - 1 Expected Chromosome Start End Strand Distance 0 chr1 2 3 - 1 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=1, step=1) Expected index RangeIndex(start=0, stop=1, step=1) index equal [ True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpvr7l545r/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpvr7l545r/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 2 3 + 1 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 2 3 + 1 1 chr1 2 3 + 1 df2 Chromosome Start End Strand Distance 0 chr1 2 3 + 1 Actual Chromosome Start End Strand Distance 0 chr1 2 3 + 1 1 chr1 2 3 + 1 Expected Chromosome Start End Strand Distance 0 chr1 2 3 + 1 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=2, step=1) Expected index RangeIndex(start=0, stop=1, step=1) ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpb2eth4jb/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpb2eth4jb/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpuqaym2kf/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpuqaym2kf/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 7 chr1 2 3 - 1 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 2 | 3 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 2 3 - 1 df2 Chromosome Start End Strand Distance 7 chr1 2 3 - 1 Actual Chromosome Start End Strand Distance 0 chr1 2 3 - 1 Expected Chromosome Start End Strand Distance 0 chr1 2 3 - 1 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=1, step=1) Expected index RangeIndex(start=0, stop=1, step=1) index equal [ True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpg_s78f1o/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpg_s78f1o/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp_fr829dc/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp_fr829dc/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 2 3 + 1 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 2 3 + 1 1 chr1 2 3 + 1 df2 Chromosome Start End Strand Distance 0 chr1 2 3 + 1 Actual Chromosome Start End Strand Distance 0 chr1 2 3 + 1 1 chr1 2 3 + 1 Expected Chromosome Start End Strand Distance 0 chr1 2 3 + 1 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=2, step=1) Expected index RangeIndex(start=0, stop=1, step=1) ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpbjkch0co/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpbjkch0co/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 2 3 + 1 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 2 3 + 1 1 chr1 2 3 + 1 df2 Chromosome Start End Strand Distance 0 chr1 2 3 + 1 Actual Chromosome Start End Strand Distance 0 chr1 2 3 + 1 1 chr1 2 3 + 1 Expected Chromosome Start End Strand Distance 0 chr1 2 3 + 1 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=2, step=1) Expected index RangeIndex(start=0, stop=1, step=1) ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpagxq7dsm/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpagxq7dsm/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 2 3 + 1 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 2 3 + 1 1 chr1 2 3 + 1 df2 Chromosome Start End Strand Distance 0 chr1 2 3 + 1 Actual Chromosome Start End Strand Distance 0 chr1 2 3 + 1 1 chr1 2 3 + 1 Expected Chromosome Start End Strand Distance 0 chr1 2 3 + 1 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=2, step=1) Expected index RangeIndex(start=0, stop=1, step=1) ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpk9zyop79/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpk9zyop79/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 2 3 + 1 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 2 3 + 1 1 chr1 2 3 + 1 df2 Chromosome Start End Strand Distance 0 chr1 2 3 + 1 Actual Chromosome Start End Strand Distance 0 chr1 2 3 + 1 1 chr1 2 3 + 1 Expected Chromosome Start End Strand Distance 0 chr1 2 3 + 1 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=2, step=1) Expected index RangeIndex(start=0, stop=1, step=1) ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp3sz4tavk/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp3sz4tavk/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 7 chr1 2 3 - 1 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 2 | 3 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 2 3 - 1 df2 Chromosome Start End Strand Distance 7 chr1 2 3 - 1 Actual Chromosome Start End Strand Distance 0 chr1 2 3 - 1 Expected Chromosome Start End Strand Distance 0 chr1 2 3 - 1 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=1, step=1) Expected index RangeIndex(start=0, stop=1, step=1) index equal [ True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpj3z9qyn1/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpj3z9qyn1/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp9i397zoc/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp9i397zoc/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpnwn0mpo4/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpnwn0mpo4/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 2 3 - 1 1 chr1 2 3 - 1 2 chr1 2 3 - 1 3 chr1 2 3 - 1 4 chr1 2 3 - 1 5 chr1 2 3 - 1 6 chr1 2 3 - 1 7 chr1 2 3 - 1 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 8 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 2 3 - 1 1 chr1 2 3 - 1 2 chr1 2 3 - 1 3 chr1 2 3 - 1 4 chr1 2 3 - 1 5 chr1 2 3 - 1 6 chr1 2 3 - 1 7 chr1 2 3 - 1 df2 Chromosome Start End Strand Distance 0 chr1 2 3 - 1 1 chr1 2 3 - 1 2 chr1 2 3 - 1 3 chr1 2 3 - 1 4 chr1 2 3 - 1 5 chr1 2 3 - 1 6 chr1 2 3 - 1 7 chr1 2 3 - 1 Actual Chromosome Start End Strand Distance 0 chr1 2 3 - 1 1 chr1 2 3 - 1 2 chr1 2 3 - 1 3 chr1 2 3 - 1 4 chr1 2 3 - 1 5 chr1 2 3 - 1 6 chr1 2 3 - 1 7 chr1 2 3 - 1 Expected Chromosome Start End Strand Distance 0 chr1 2 3 - 1 1 chr1 2 3 - 1 2 chr1 2 3 - 1 3 chr1 2 3 - 1 4 chr1 2 3 - 1 5 chr1 2 3 - 1 6 chr1 2 3 - 1 7 chr1 2 3 - 1 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=8, step=1) Expected index RangeIndex(start=0, stop=8, step=1) index equal [ True True True True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp9vtozgrb/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp9vtozgrb/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp5ctafzxj/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp5ctafzxj/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 2 3 + 1 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 2 3 + 1 1 chr1 2 3 + 1 df2 Chromosome Start End Strand Distance 0 chr1 2 3 + 1 Actual Chromosome Start End Strand Distance 0 chr1 2 3 + 1 1 chr1 2 3 + 1 Expected Chromosome Start End Strand Distance 0 chr1 2 3 + 1 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=2, step=1) Expected index RangeIndex(start=0, stop=1, step=1) ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpghq_ssyh/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpghq_ssyh/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpvy2ded3w/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpvy2ded3w/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 2 3 + 1 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 2 3 + 1 1 chr1 2 3 + 1 df2 Chromosome Start End Strand Distance 0 chr1 2 3 + 1 Actual Chromosome Start End Strand Distance 0 chr1 2 3 + 1 1 chr1 2 3 + 1 Expected Chromosome Start End Strand Distance 0 chr1 2 3 + 1 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=2, step=1) Expected index RangeIndex(start=0, stop=1, step=1) ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp1znlwy_5/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp1znlwy_5/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp3upkx5q5/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp3upkx5q5/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpxgruyr58/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpxgruyr58/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 2 3 + 1 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 2 3 + 1 1 chr1 2 3 + 1 df2 Chromosome Start End Strand Distance 0 chr1 2 3 + 1 Actual Chromosome Start End Strand Distance 0 chr1 2 3 + 1 1 chr1 2 3 + 1 Expected Chromosome Start End Strand Distance 0 chr1 2 3 + 1 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=2, step=1) Expected index RangeIndex(start=0, stop=1, step=1) ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp0u86acog/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp0u86acog/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 2 3 + 1 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 2 3 + 1 1 chr1 2 3 + 1 df2 Chromosome Start End Strand Distance 0 chr1 2 3 + 1 Actual Chromosome Start End Strand Distance 0 chr1 2 3 + 1 1 chr1 2 3 + 1 Expected Chromosome Start End Strand Distance 0 chr1 2 3 + 1 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=2, step=1) Expected index RangeIndex(start=0, stop=1, step=1) ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpb0be0ew4/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpb0be0ew4/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 2 3 + 1 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 2 3 + 1 1 chr1 2 3 + 1 df2 Chromosome Start End Strand Distance 0 chr1 2 3 + 1 Actual Chromosome Start End Strand Distance 0 chr1 2 3 + 1 1 chr1 2 3 + 1 Expected Chromosome Start End Strand Distance 0 chr1 2 3 + 1 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=2, step=1) Expected index RangeIndex(start=0, stop=1, step=1) ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpqfxdeft7/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpqfxdeft7/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 2 3 + 1 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 2 3 + 1 1 chr1 2 3 + 1 df2 Chromosome Start End Strand Distance 0 chr1 2 3 + 1 Actual Chromosome Start End Strand Distance 0 chr1 2 3 + 1 1 chr1 2 3 + 1 Expected Chromosome Start End Strand Distance 0 chr1 2 3 + 1 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=2, step=1) Expected index RangeIndex(start=0, stop=1, step=1) ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpfl60ryzn/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpfl60ryzn/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpga7vlrd3/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpga7vlrd3/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 2 3 - 1 1 chr1 2 3 - 1 2 chr1 2 3 - 1 3 chr1 2 3 - 1 4 chr1 2 3 - 1 5 chr1 2 3 - 1 6 chr1 2 3 - 1 7 chr1 2 3 - 1 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 8 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 2 3 - 1 1 chr1 2 3 - 1 2 chr1 2 3 - 1 3 chr1 2 3 - 1 4 chr1 2 3 - 1 5 chr1 2 3 - 1 6 chr1 2 3 - 1 7 chr1 2 3 - 1 df2 Chromosome Start End Strand Distance 0 chr1 2 3 - 1 1 chr1 2 3 - 1 2 chr1 2 3 - 1 3 chr1 2 3 - 1 4 chr1 2 3 - 1 5 chr1 2 3 - 1 6 chr1 2 3 - 1 7 chr1 2 3 - 1 Actual Chromosome Start End Strand Distance 0 chr1 2 3 - 1 1 chr1 2 3 - 1 2 chr1 2 3 - 1 3 chr1 2 3 - 1 4 chr1 2 3 - 1 5 chr1 2 3 - 1 6 chr1 2 3 - 1 7 chr1 2 3 - 1 Expected Chromosome Start End Strand Distance 0 chr1 2 3 - 1 1 chr1 2 3 - 1 2 chr1 2 3 - 1 3 chr1 2 3 - 1 4 chr1 2 3 - 1 5 chr1 2 3 - 1 6 chr1 2 3 - 1 7 chr1 2 3 - 1 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=8, step=1) Expected index RangeIndex(start=0, stop=8, step=1) index equal [ True True True True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpzaxeh81h/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpzaxeh81h/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpsyua0igs/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpsyua0igs/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp8w79xuln/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp8w79xuln/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 2 3 + 1 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 2 3 + 1 1 chr1 2 3 + 1 df2 Chromosome Start End Strand Distance 0 chr1 2 3 + 1 Actual Chromosome Start End Strand Distance 0 chr1 2 3 + 1 1 chr1 2 3 + 1 Expected Chromosome Start End Strand Distance 0 chr1 2 3 + 1 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=2, step=1) Expected index RangeIndex(start=0, stop=1, step=1) ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp57ls1qu8/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp57ls1qu8/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpn_fb0033/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpn_fb0033/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpwwb4904e/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpwwb4904e/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpo2mus0qj/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpo2mus0qj/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 1 chr1 2 3 - 1 2 chr1 2 3 - 1 3 chr1 2 3 - 1 4 chr1 2 3 - 1 5 chr1 2 3 - 1 6 chr1 2 3 - 1 7 chr1 2 3 - 1 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 7 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 2 3 - 1 1 chr1 2 3 - 1 2 chr1 2 3 - 1 3 chr1 2 3 - 1 4 chr1 2 3 - 1 5 chr1 2 3 - 1 6 chr1 2 3 - 1 df2 Chromosome Start End Strand Distance 1 chr1 2 3 - 1 2 chr1 2 3 - 1 3 chr1 2 3 - 1 4 chr1 2 3 - 1 5 chr1 2 3 - 1 6 chr1 2 3 - 1 7 chr1 2 3 - 1 Actual Chromosome Start End Strand Distance 0 chr1 2 3 - 1 1 chr1 2 3 - 1 2 chr1 2 3 - 1 3 chr1 2 3 - 1 4 chr1 2 3 - 1 5 chr1 2 3 - 1 6 chr1 2 3 - 1 Expected Chromosome Start End Strand Distance 0 chr1 2 3 - 1 1 chr1 2 3 - 1 2 chr1 2 3 - 1 3 chr1 2 3 - 1 4 chr1 2 3 - 1 5 chr1 2 3 - 1 6 chr1 2 3 - 1 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=7, step=1) Expected index RangeIndex(start=0, stop=7, step=1) index equal [ True True True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp41kjgkzl/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp41kjgkzl/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 6 chr1 2 3 - 1 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 2 | 3 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 2 3 - 1 df2 Chromosome Start End Strand Distance 6 chr1 2 3 - 1 Actual Chromosome Start End Strand Distance 0 chr1 2 3 - 1 Expected Chromosome Start End Strand Distance 0 chr1 2 3 - 1 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=1, step=1) Expected index RangeIndex(start=0, stop=1, step=1) index equal [ True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp_7m0yyd7/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp_7m0yyd7/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 1 chr1 2 3 - 1 2 chr1 2 3 - 1 3 chr1 2 3 - 1 4 chr1 2 3 - 1 5 chr1 2 3 - 1 6 chr1 2 3 - 1 7 chr1 2 3 - 1 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 7 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 2 3 - 1 1 chr1 2 3 - 1 2 chr1 2 3 - 1 3 chr1 2 3 - 1 4 chr1 2 3 - 1 5 chr1 2 3 - 1 6 chr1 2 3 - 1 df2 Chromosome Start End Strand Distance 1 chr1 2 3 - 1 2 chr1 2 3 - 1 3 chr1 2 3 - 1 4 chr1 2 3 - 1 5 chr1 2 3 - 1 6 chr1 2 3 - 1 7 chr1 2 3 - 1 Actual Chromosome Start End Strand Distance 0 chr1 2 3 - 1 1 chr1 2 3 - 1 2 chr1 2 3 - 1 3 chr1 2 3 - 1 4 chr1 2 3 - 1 5 chr1 2 3 - 1 6 chr1 2 3 - 1 Expected Chromosome Start End Strand Distance 0 chr1 2 3 - 1 1 chr1 2 3 - 1 2 chr1 2 3 - 1 3 chr1 2 3 - 1 4 chr1 2 3 - 1 5 chr1 2 3 - 1 6 chr1 2 3 - 1 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=7, step=1) Expected index RangeIndex(start=0, stop=7, step=1) index equal [ True True True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp56lhepo7/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp56lhepo7/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 6 chr1 2 3 - 1 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 2 | 3 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 2 3 - 1 df2 Chromosome Start End Strand Distance 6 chr1 2 3 - 1 Actual Chromosome Start End Strand Distance 0 chr1 2 3 - 1 Expected Chromosome Start End Strand Distance 0 chr1 2 3 - 1 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=1, step=1) Expected index RangeIndex(start=0, stop=1, step=1) index equal [ True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpkl6bf00y/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpkl6bf00y/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpyhhrm9ny/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpyhhrm9ny/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 2 3 + 1 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 2 | 3 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 2 3 + 1 df2 Chromosome Start End Strand Distance 0 chr1 2 3 + 1 Actual Chromosome Start End Strand Distance 0 chr1 2 3 + 1 Expected Chromosome Start End Strand Distance 0 chr1 2 3 + 1 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=1, step=1) Expected index RangeIndex(start=0, stop=1, step=1) index equal [ True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp5t544eod/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp5t544eod/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpb0yujrlk/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpb0yujrlk/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpigruizct/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpigruizct/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpf_seha_4/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpf_seha_4/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp8lxsrhz4/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp8lxsrhz4/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpybo_kb32/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpybo_kb32/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmprg1fr4ip/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmprg1fr4ip/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmprbp0rjrk/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmprbp0rjrk/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpqf9iseri/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpqf9iseri/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpfxn7a_1b/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpfxn7a_1b/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 2 3 + 1 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 2 | 3 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 2 3 + 1 df2 Chromosome Start End Strand Distance 0 chr1 2 3 + 1 Actual Chromosome Start End Strand Distance 0 chr1 2 3 + 1 Expected Chromosome Start End Strand Distance 0 chr1 2 3 + 1 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=1, step=1) Expected index RangeIndex(start=0, stop=1, step=1) index equal [ True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpus6mt50p/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpus6mt50p/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpv2ucwh3e/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpv2ucwh3e/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 2 3 + 1 1 chr1 2 3 - 1 2 chr1 2 3 - 1 3 chr1 2 3 - 1 4 chr1 2 3 - 1 5 chr1 2 3 - 1 6 chr1 2 3 - 1 7 chr1 2 3 - 1 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 8 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 2 3 + 1 1 chr1 2 3 - 1 2 chr1 2 3 - 1 3 chr1 2 3 - 1 4 chr1 2 3 - 1 5 chr1 2 3 - 1 6 chr1 2 3 - 1 7 chr1 2 3 - 1 df2 Chromosome Start End Strand Distance 0 chr1 2 3 + 1 1 chr1 2 3 - 1 2 chr1 2 3 - 1 3 chr1 2 3 - 1 4 chr1 2 3 - 1 5 chr1 2 3 - 1 6 chr1 2 3 - 1 7 chr1 2 3 - 1 Actual Chromosome Start End Strand Distance 0 chr1 2 3 + 1 1 chr1 2 3 - 1 2 chr1 2 3 - 1 3 chr1 2 3 - 1 4 chr1 2 3 - 1 5 chr1 2 3 - 1 6 chr1 2 3 - 1 7 chr1 2 3 - 1 Expected Chromosome Start End Strand Distance 0 chr1 2 3 + 1 1 chr1 2 3 - 1 2 chr1 2 3 - 1 3 chr1 2 3 - 1 4 chr1 2 3 - 1 5 chr1 2 3 - 1 6 chr1 2 3 - 1 7 chr1 2 3 - 1 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=8, step=1) Expected index RangeIndex(start=0, stop=8, step=1) index equal [ True True True True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpjiga39hi/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpjiga39hi/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 2 3 + 1 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 2 | 3 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 2 3 + 1 df2 Chromosome Start End Strand Distance 0 chr1 2 3 + 1 Actual Chromosome Start End Strand Distance 0 chr1 2 3 + 1 Expected Chromosome Start End Strand Distance 0 chr1 2 3 + 1 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=1, step=1) Expected index RangeIndex(start=0, stop=1, step=1) index equal [ True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp3n8uwqxh/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp3n8uwqxh/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpd702jdnn/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpd702jdnn/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 2 3 + 1 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 2 3 + 1 1 chr1 2 3 + 1 df2 Chromosome Start End Strand Distance 0 chr1 2 3 + 1 Actual Chromosome Start End Strand Distance 0 chr1 2 3 + 1 1 chr1 2 3 + 1 Expected Chromosome Start End Strand Distance 0 chr1 2 3 + 1 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=2, step=1) Expected index RangeIndex(start=0, stop=1, step=1) ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp6q74oyac/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp6q74oyac/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpq9eqawmj/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpq9eqawmj/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 2 3 + 1 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 2 3 + 1 1 chr1 2 3 + 1 df2 Chromosome Start End Strand Distance 0 chr1 2 3 + 1 Actual Chromosome Start End Strand Distance 0 chr1 2 3 + 1 1 chr1 2 3 + 1 Expected Chromosome Start End Strand Distance 0 chr1 2 3 + 1 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=2, step=1) Expected index RangeIndex(start=0, stop=1, step=1) ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpnqr2rzy0/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpnqr2rzy0/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 2 3 + 1 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 2 3 + 1 1 chr1 2 3 + 1 df2 Chromosome Start End Strand Distance 0 chr1 2 3 + 1 Actual Chromosome Start End Strand Distance 0 chr1 2 3 + 1 1 chr1 2 3 + 1 Expected Chromosome Start End Strand Distance 0 chr1 2 3 + 1 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=2, step=1) Expected index RangeIndex(start=0, stop=1, step=1) ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp6ejz8fnn/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp6ejz8fnn/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 2 3 + 1 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 2 3 + 1 1 chr1 2 3 + 1 df2 Chromosome Start End Strand Distance 0 chr1 2 3 + 1 Actual Chromosome Start End Strand Distance 0 chr1 2 3 + 1 1 chr1 2 3 + 1 Expected Chromosome Start End Strand Distance 0 chr1 2 3 + 1 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=2, step=1) Expected index RangeIndex(start=0, stop=1, step=1) ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp5uiaylm7/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp5uiaylm7/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 2 3 + 1 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 2 3 + 1 1 chr1 2 3 + 1 df2 Chromosome Start End Strand Distance 0 chr1 2 3 + 1 Actual Chromosome Start End Strand Distance 0 chr1 2 3 + 1 1 chr1 2 3 + 1 Expected Chromosome Start End Strand Distance 0 chr1 2 3 + 1 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=2, step=1) Expected index RangeIndex(start=0, stop=1, step=1) ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmppjqwmmr6/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmppjqwmmr6/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 2 3 + 1 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 2 3 + 1 1 chr1 2 3 + 1 df2 Chromosome Start End Strand Distance 0 chr1 2 3 + 1 Actual Chromosome Start End Strand Distance 0 chr1 2 3 + 1 1 chr1 2 3 + 1 Expected Chromosome Start End Strand Distance 0 chr1 2 3 + 1 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=2, step=1) Expected index RangeIndex(start=0, stop=1, step=1) ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp70o8z4lz/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp70o8z4lz/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 2 3 + 1 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 2 3 + 1 1 chr1 2 3 + 1 df2 Chromosome Start End Strand Distance 0 chr1 2 3 + 1 Actual Chromosome Start End Strand Distance 0 chr1 2 3 + 1 1 chr1 2 3 + 1 Expected Chromosome Start End Strand Distance 0 chr1 2 3 + 1 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=2, step=1) Expected index RangeIndex(start=0, stop=1, step=1) ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp5gcma_9f/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp5gcma_9f/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmps3qqto9v/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmps3qqto9v/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 2 3 + 1 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 2 3 + 1 1 chr1 2 3 + 1 df2 Chromosome Start End Strand Distance 0 chr1 2 3 + 1 Actual Chromosome Start End Strand Distance 0 chr1 2 3 + 1 1 chr1 2 3 + 1 Expected Chromosome Start End Strand Distance 0 chr1 2 3 + 1 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=2, step=1) Expected index RangeIndex(start=0, stop=1, step=1) ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp7_gk8yla/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp7_gk8yla/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 2 3 + 1 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 2 3 + 1 1 chr1 2 3 + 1 df2 Chromosome Start End Strand Distance 0 chr1 2 3 + 1 Actual Chromosome Start End Strand Distance 0 chr1 2 3 + 1 1 chr1 2 3 + 1 Expected Chromosome Start End Strand Distance 0 chr1 2 3 + 1 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=2, step=1) Expected index RangeIndex(start=0, stop=1, step=1) ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpkujpu1uq/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpkujpu1uq/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 2 3 + 1 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 2 3 + 1 1 chr1 2 3 + 1 df2 Chromosome Start End Strand Distance 0 chr1 2 3 + 1 Actual Chromosome Start End Strand Distance 0 chr1 2 3 + 1 1 chr1 2 3 + 1 Expected Chromosome Start End Strand Distance 0 chr1 2 3 + 1 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=2, step=1) Expected index RangeIndex(start=0, stop=1, step=1) ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpl38nbwx1/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpl38nbwx1/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 2 3 + 1 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 2 3 + 1 1 chr1 2 3 + 1 df2 Chromosome Start End Strand Distance 0 chr1 2 3 + 1 Actual Chromosome Start End Strand Distance 0 chr1 2 3 + 1 1 chr1 2 3 + 1 Expected Chromosome Start End Strand Distance 0 chr1 2 3 + 1 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=2, step=1) Expected index RangeIndex(start=0, stop=1, step=1) ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpt5jszatm/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpt5jszatm/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 2 3 + 1 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 2 3 + 1 1 chr1 2 3 + 1 df2 Chromosome Start End Strand Distance 0 chr1 2 3 + 1 Actual Chromosome Start End Strand Distance 0 chr1 2 3 + 1 1 chr1 2 3 + 1 Expected Chromosome Start End Strand Distance 0 chr1 2 3 + 1 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=2, step=1) Expected index RangeIndex(start=0, stop=1, step=1) ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpwyz1jobv/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpwyz1jobv/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp3zbelqvj/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp3zbelqvj/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpw0r078t3/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpw0r078t3/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 1 3 + 1 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 1 | 3 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 1 3 + 1 df2 Chromosome Start End Strand Distance 0 chr1 1 3 + 1 Actual Chromosome Start End Strand Distance 0 chr1 1 3 + 1 Expected Chromosome Start End Strand Distance 0 chr1 1 3 + 1 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=1, step=1) Expected index RangeIndex(start=0, stop=1, step=1) index equal [ True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpqnr_77sr/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpqnr_77sr/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 2 3 + 1 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 2 | 3 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 2 3 + 1 df2 Chromosome Start End Strand Distance 0 chr1 2 3 + 1 Actual Chromosome Start End Strand Distance 0 chr1 2 3 + 1 Expected Chromosome Start End Strand Distance 0 chr1 2 3 + 1 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=1, step=1) Expected index RangeIndex(start=0, stop=1, step=1) index equal [ True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpegaehh4l/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpegaehh4l/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp6l3vg2q4/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp6l3vg2q4/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 2 3 + 1 1 chr1 2 3 - 1 2 chr1 2 3 - 1 3 chr1 2 3 - 1 4 chr1 2 3 - 1 5 chr1 2 3 - 1 6 chr1 2 3 - 1 7 chr1 2 3 - 1 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 8 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 2 3 + 1 1 chr1 2 3 - 1 2 chr1 2 3 - 1 3 chr1 2 3 - 1 4 chr1 2 3 - 1 5 chr1 2 3 - 1 6 chr1 2 3 - 1 7 chr1 2 3 - 1 df2 Chromosome Start End Strand Distance 0 chr1 2 3 + 1 1 chr1 2 3 - 1 2 chr1 2 3 - 1 3 chr1 2 3 - 1 4 chr1 2 3 - 1 5 chr1 2 3 - 1 6 chr1 2 3 - 1 7 chr1 2 3 - 1 Actual Chromosome Start End Strand Distance 0 chr1 2 3 + 1 1 chr1 2 3 - 1 2 chr1 2 3 - 1 3 chr1 2 3 - 1 4 chr1 2 3 - 1 5 chr1 2 3 - 1 6 chr1 2 3 - 1 7 chr1 2 3 - 1 Expected Chromosome Start End Strand Distance 0 chr1 2 3 + 1 1 chr1 2 3 - 1 2 chr1 2 3 - 1 3 chr1 2 3 - 1 4 chr1 2 3 - 1 5 chr1 2 3 - 1 6 chr1 2 3 - 1 7 chr1 2 3 - 1 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=8, step=1) Expected index RangeIndex(start=0, stop=8, step=1) index equal [ True True True True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpy1j7h0u3/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpy1j7h0u3/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 2 3 + 1 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 2 | 3 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 2 3 + 1 df2 Chromosome Start End Strand Distance 0 chr1 2 3 + 1 Actual Chromosome Start End Strand Distance 0 chr1 2 3 + 1 Expected Chromosome Start End Strand Distance 0 chr1 2 3 + 1 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=1, step=1) Expected index RangeIndex(start=0, stop=1, step=1) index equal [ True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp7b67bkw1/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp7b67bkw1/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpfjlu7r3o/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpfjlu7r3o/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 2 3 + 1 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 2 3 + 1 1 chr1 2 3 + 1 df2 Chromosome Start End Strand Distance 0 chr1 2 3 + 1 Actual Chromosome Start End Strand Distance 0 chr1 2 3 + 1 1 chr1 2 3 + 1 Expected Chromosome Start End Strand Distance 0 chr1 2 3 + 1 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=2, step=1) Expected index RangeIndex(start=0, stop=1, step=1) ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmps68nuo8a/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmps68nuo8a/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpmbxnlfx3/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpmbxnlfx3/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpvijldsgw/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpvijldsgw/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 1 3 + 1 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 1 | 3 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 1 3 + 1 df2 Chromosome Start End Strand Distance 0 chr1 1 3 + 1 Actual Chromosome Start End Strand Distance 0 chr1 1 3 + 1 Expected Chromosome Start End Strand Distance 0 chr1 1 3 + 1 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=1, step=1) Expected index RangeIndex(start=0, stop=1, step=1) index equal [ True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpzxyvp7v6/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpzxyvp7v6/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 2 3 + 1 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 2 | 3 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 2 3 + 1 df2 Chromosome Start End Strand Distance 0 chr1 2 3 + 1 Actual Chromosome Start End Strand Distance 0 chr1 2 3 + 1 Expected Chromosome Start End Strand Distance 0 chr1 2 3 + 1 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=1, step=1) Expected index RangeIndex(start=0, stop=1, step=1) index equal [ True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmptfn_b390/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmptfn_b390/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp4mip79zw/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp4mip79zw/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 2 3 + 1 1 chr1 2 3 - 1 2 chr1 2 3 - 1 3 chr1 2 3 - 1 4 chr1 2 3 - 1 5 chr1 2 3 - 1 6 chr1 2 3 - 1 7 chr1 2 3 - 1 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 8 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 2 3 + 1 1 chr1 2 3 - 1 2 chr1 2 3 - 1 3 chr1 2 3 - 1 4 chr1 2 3 - 1 5 chr1 2 3 - 1 6 chr1 2 3 - 1 7 chr1 2 3 - 1 df2 Chromosome Start End Strand Distance 0 chr1 2 3 + 1 1 chr1 2 3 - 1 2 chr1 2 3 - 1 3 chr1 2 3 - 1 4 chr1 2 3 - 1 5 chr1 2 3 - 1 6 chr1 2 3 - 1 7 chr1 2 3 - 1 Actual Chromosome Start End Strand Distance 0 chr1 2 3 + 1 1 chr1 2 3 - 1 2 chr1 2 3 - 1 3 chr1 2 3 - 1 4 chr1 2 3 - 1 5 chr1 2 3 - 1 6 chr1 2 3 - 1 7 chr1 2 3 - 1 Expected Chromosome Start End Strand Distance 0 chr1 2 3 + 1 1 chr1 2 3 - 1 2 chr1 2 3 - 1 3 chr1 2 3 - 1 4 chr1 2 3 - 1 5 chr1 2 3 - 1 6 chr1 2 3 - 1 7 chr1 2 3 - 1 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=8, step=1) Expected index RangeIndex(start=0, stop=8, step=1) index equal [ True True True True True True True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpxle2oe7t/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpxle2oe7t/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 2 3 + 1 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 2 | 3 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 2 3 + 1 df2 Chromosome Start End Strand Distance 0 chr1 2 3 + 1 Actual Chromosome Start End Strand Distance 0 chr1 2 3 + 1 Expected Chromosome Start End Strand Distance 0 chr1 2 3 + 1 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=1, step=1) Expected index RangeIndex(start=0, stop=1, step=1) index equal [ True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp1lfmw4ht/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp1lfmw4ht/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 1 2 + 2 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 1 | 2 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 1 2 + 2 df2 Chromosome Start End Strand Distance 0 chr1 1 2 + 2 Actual Chromosome Start End Strand Distance 0 chr1 1 2 + 2 Expected Chromosome Start End Strand Distance 0 chr1 1 2 + 2 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=1, step=1) Expected index RangeIndex(start=0, stop=1, step=1) index equal [ True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp0982qt7g/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp0982qt7g/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 7 chr1 1 2 - 2 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 1 | 2 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 1 2 - 2 df2 Chromosome Start End Strand Distance 7 chr1 1 2 - 2 Actual Chromosome Start End Strand Distance 0 chr1 1 2 - 2 Expected Chromosome Start End Strand Distance 0 chr1 1 2 - 2 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=1, step=1) Expected index RangeIndex(start=0, stop=1, step=1) index equal [ True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp446h90gz/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp446h90gz/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 1 2 + 2 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 1 | 2 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 1 2 + 2 df2 Chromosome Start End Strand Distance 0 chr1 1 2 + 2 Actual Chromosome Start End Strand Distance 0 chr1 1 2 + 2 Expected Chromosome Start End Strand Distance 0 chr1 1 2 + 2 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=1, step=1) Expected index RangeIndex(start=0, stop=1, step=1) index equal [ True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp718c7xib/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp718c7xib/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 1 2 + 2 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 1 | 2 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 1 2 + 2 df2 Chromosome Start End Strand Distance 0 chr1 1 2 + 2 Actual Chromosome Start End Strand Distance 0 chr1 1 2 + 2 Expected Chromosome Start End Strand Distance 0 chr1 1 2 + 2 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=1, step=1) Expected index RangeIndex(start=0, stop=1, step=1) index equal [ True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpjnq3t96j/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpjnq3t96j/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 1 2 + 2 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 1 | 2 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 1 2 + 2 df2 Chromosome Start End Strand Distance 0 chr1 1 2 + 2 Actual Chromosome Start End Strand Distance 0 chr1 1 2 + 2 Expected Chromosome Start End Strand Distance 0 chr1 1 2 + 2 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=1, step=1) Expected index RangeIndex(start=0, stop=1, step=1) index equal [ True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmps8ozrzqe/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmps8ozrzqe/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpdjj7kj44/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpdjj7kj44/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp7ds9l7sp/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp7ds9l7sp/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpget_69lg/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpget_69lg/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 1 2 - 2 6 chr1 2 3 - 1 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 1 | 2 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 1 chr1 1 2 - 2 0 chr1 2 3 - 1 df2 Chromosome Start End Strand Distance 0 chr1 1 2 - 2 6 chr1 2 3 - 1 Actual Chromosome Start End Strand Distance 0 chr1 1 2 - 2 1 chr1 2 3 - 1 Expected Chromosome Start End Strand Distance 0 chr1 1 2 - 2 1 chr1 2 3 - 1 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=2, step=1) Expected index RangeIndex(start=0, stop=2, step=1) index equal [ True True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpq3h8rktm/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpq3h8rktm/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 2 3 + 1 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 2 3 + 1 1 chr1 2 3 + 1 df2 Chromosome Start End Strand Distance 0 chr1 2 3 + 1 Actual Chromosome Start End Strand Distance 0 chr1 2 3 + 1 1 chr1 2 3 + 1 Expected Chromosome Start End Strand Distance 0 chr1 2 3 + 1 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=2, step=1) Expected index RangeIndex(start=0, stop=1, step=1) ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp_b28ae9v/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp_b28ae9v/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 2 3 + 1 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 2 3 + 1 1 chr1 2 3 + 1 df2 Chromosome Start End Strand Distance 0 chr1 2 3 + 1 Actual Chromosome Start End Strand Distance 0 chr1 2 3 + 1 1 chr1 2 3 + 1 Expected Chromosome Start End Strand Distance 0 chr1 2 3 + 1 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=2, step=1) Expected index RangeIndex(start=0, stop=1, step=1) ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpt5nsi7ci/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpt5nsi7ci/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 2 3 + 1 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 2 3 + 1 1 chr1 2 3 + 1 df2 Chromosome Start End Strand Distance 0 chr1 2 3 + 1 Actual Chromosome Start End Strand Distance 0 chr1 2 3 + 1 1 chr1 2 3 + 1 Expected Chromosome Start End Strand Distance 0 chr1 2 3 + 1 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=2, step=1) Expected index RangeIndex(start=0, stop=1, step=1) ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp96bbwkfe/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp96bbwkfe/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 2 3 + 1 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 2 3 + 1 1 chr1 2 3 + 1 df2 Chromosome Start End Strand Distance 0 chr1 2 3 + 1 Actual Chromosome Start End Strand Distance 0 chr1 2 3 + 1 1 chr1 2 3 + 1 Expected Chromosome Start End Strand Distance 0 chr1 2 3 + 1 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=2, step=1) Expected index RangeIndex(start=0, stop=1, step=1) ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp4p7z9afs/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp4p7z9afs/f2.bed) bedtools bedtools bedtools bedtools bedtools Empty DataFrame Columns: [Chromosome, Start, End, Strand, Distance] Index: [] result result result result result Empty PyRanges ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpisr06cl8/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpisr06cl8/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 1 2 + 2 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 1 | 2 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 1 2 + 2 df2 Chromosome Start End Strand Distance 0 chr1 1 2 + 2 Actual Chromosome Start End Strand Distance 0 chr1 1 2 + 2 Expected Chromosome Start End Strand Distance 0 chr1 1 2 + 2 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=1, step=1) Expected index RangeIndex(start=0, stop=1, step=1) index equal [ True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp38098ea0/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp38098ea0/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 7 chr1 1 2 - 2 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 1 | 2 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 1 2 - 2 df2 Chromosome Start End Strand Distance 7 chr1 1 2 - 2 Actual Chromosome Start End Strand Distance 0 chr1 1 2 - 2 Expected Chromosome Start End Strand Distance 0 chr1 1 2 - 2 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=1, step=1) Expected index RangeIndex(start=0, stop=1, step=1) index equal [ True] ---------------------------------------------------------------------------------------------------- cmd cmd cmd cmd cmd bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpsrh2q8e7/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpsrh2q8e7/f2.bed) bedtools bedtools bedtools bedtools bedtools Chromosome Start End Strand Distance 0 chr1 2 3 + 1 result result result result result +--------------+-----------+-----------+------------+-----------+-------+ | Chromosome | Start | End | Name | Score | +7 | | (category) | (int64) | (int64) | (object) | (int64) | ... | |--------------+-----------+-----------+------------+-----------+-------| | chr1 | 2 | 3 | a | 0 | ... | | chr1 | 2 | 3 | a | 0 | ... | +--------------+-----------+-----------+------------+-----------+-------+ Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. For printing, the PyRanges was sorted on Chromosome and Strand. 7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance ---------------------------------------------------------------------------------------------------- df1 Chromosome Start End Strand Distance 0 chr1 2 3 + 1 1 chr1 2 3 + 1 df2 Chromosome Start End Strand Distance 0 chr1 2 3 + 1 Actual Chromosome Start End Strand Distance 0 chr1 2 3 + 1 1 chr1 2 3 + 1 Expected Chromosome Start End Strand Distance 0 chr1 2 3 + 1 Actual dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Expected dtypes Chromosome object Start int64 End int64 Strand object Distance int64 dtype: object Actual index RangeIndex(start=0, stop=2, step=1) Expected index RangeIndex(start=0, stop=1, step=1) ----------------------------- Captured stderr call ----------------------------- Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr10 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr8 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr10 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr10 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr16 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr3 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr14 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr2 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr21 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr21 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr10 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr10 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr20 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr10 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr10 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr20 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr10 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr10 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr20 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr10 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr10 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr17 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr17 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr17 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr17 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chrM than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr2 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr2 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr2 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr2 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr2 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr2 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr12 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr18 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr6 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr8 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chrM than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr6 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr8 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chrM than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr13 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr6 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr18 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr6 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr2 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr2 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr11 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr11 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr2 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr2 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr19 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr22 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr2 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr2 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr2 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr2 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr2 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr2 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr19 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr18 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr19 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr7 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chrY than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr6 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr7 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr7 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr7 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr7 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr7 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr19 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chrY than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr19 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr19 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr15 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr15 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr15 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr15 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr2 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr3 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr2 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chrM than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chrM than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chrM than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chrM than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chrM than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chrM than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chrM than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chrM than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr15 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr20 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr22 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr20 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr20 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. ---------------------------------- Hypothesis ---------------------------------- WARNING: Hypothesis has spent more than five minutes working to shrink a failing example, and stopped because it is making very slow progress. When you re-run your tests, shrinking will resume and may take this long before aborting again. PLEASE REPORT THIS if you can provide a reproducing example, so that we can improve shrinking performance for everyone. =============================== warnings summary =============================== tests/conftest.py:83 /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/conftest.py:83: SyntaxWarning: invalid escape sequence '\s' sep="\s+", pyranges/__init__.py:18: 21 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/__init__.py:18: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html import pkg_resources tests/test_binary.py:118: 20 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_binary.py:118: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) tests/test_binary.py:139: 20 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_binary.py:139: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) tests/test_binary.py:160: 20 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_binary.py:160: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) tests/test_binary.py:187: 20 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_binary.py:187: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) tests/test_binary.py:212: 20 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_binary.py:212: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) tests/test_binary.py:291: 20 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_binary.py:291: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) tests/test_binary.py:329: 20 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_binary.py:329: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) tests/test_binary.py:368: 20 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_binary.py:368: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) tests/test_binary.py:392: 20 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_binary.py:392: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) tests/test_binary.py:426: 20 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_binary.py:426: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) tests/test_binary.py:516: 20 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_binary.py:516: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) tests/test_binary.py:579: 20 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_binary.py:579: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) pyranges/methods/init.py:60: 100 warnings .pybuild/cpython3_3.13_pyranges/build/tests/test_change_chromosome_custom.py: 2 warnings .pybuild/cpython3_3.13_pyranges/build/tests/test_concat.py: 8 warnings .pybuild/cpython3_3.13_pyranges/build/tests/test_count_overlaps.py: 1 warning .pybuild/cpython3_3.13_pyranges/build/tests/data/test_data.py: 9 warnings .pybuild/cpython3_3.13_pyranges/build/tests/test_do_not_error.py: 159272 warnings .pybuild/cpython3_3.13_pyranges/build/tests/test_binary.py: 159474 warnings .pybuild/cpython3_3.13_pyranges/build/tests/test_getset_attr.py: 3 warnings .pybuild/cpython3_3.13_pyranges/build/tests/test_io.py: 4 warnings .pybuild/cpython3_3.13_pyranges/build/tests/test_pickle.py: 1 warning .pybuild/cpython3_3.13_pyranges/build/tests/test_stranded.py: 6 warnings .pybuild/cpython3_3.13_pyranges/build/tests/windows/test_windows.py: 2 warnings .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py: 358 warnings .pybuild/cpython3_3.13_pyranges/build/tests/test_unary.py: 24840 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/methods/init.py:60: FutureWarning: The default of observed=False is deprecated and will be changed to True in a future version of pandas. Pass observed=False to retain current behavior or observed=True to adopt the future default and silence this warning. return {k: v for k, v in df.groupby(grpby_key)} pyranges/methods/init.py:189: 80 warnings .pybuild/cpython3_3.13_pyranges/build/tests/test_change_chromosome_custom.py: 1 warning .pybuild/cpython3_3.13_pyranges/build/tests/test_concat.py: 7 warnings .pybuild/cpython3_3.13_pyranges/build/tests/test_do_not_error.py: 4446 warnings .pybuild/cpython3_3.13_pyranges/build/tests/test_binary.py: 2000 warnings .pybuild/cpython3_3.13_pyranges/build/tests/test_stranded.py: 2 warnings .pybuild/cpython3_3.13_pyranges/build/tests/test_unary.py: 6665 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/methods/init.py:189: FutureWarning: The default of observed=False is deprecated and will be changed to True in a future version of pandas. Pass observed=False to retain current behavior or observed=True to adopt the future default and silence this warning. empty_removed = df.groupby("Chromosome") tests/test_do_not_error.py:46: 20 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_do_not_error.py:46: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) tests/test_unary.py:35: 20 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_unary.py:35: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) tests/test_unary.py:100: 20 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_unary.py:100: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) tests/test_unary.py:163: 20 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_unary.py:163: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) tests/test_unary.py:205: 20 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_unary.py:205: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) tests/test_unary.py:234: 20 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_unary.py:234: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) tests/test_unary.py:272: 20 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_unary.py:272: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) tests/test_unary.py:287: 20 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_unary.py:287: HypothesisDeprecationWarning: The return_value health check is deprecated, because this is always an error. @settings( tests/test_unary.py:315: 20 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_unary.py:315: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) .pybuild/cpython3_3.13_pyranges/build/tests/test_concat.py::test_concat_stranded_unstranded /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/methods/concat.py:47: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['+', '+', '-', NaN, NaN] Categories (3, object): ['+', '-', '.']' has dtype incompatible with category, please explicitly cast to a compatible dtype first. v.loc[:, "Strand"] = type_v.cat.add_categories(["."]) .pybuild/cpython3_3.13_pyranges/build/tests/test_concat.py: 1 warning .pybuild/cpython3_3.13_pyranges/build/tests/test_do_not_error.py: 3042 warnings .pybuild/cpython3_3.13_pyranges/build/tests/test_stranded.py: 2 warnings .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py: 119 warnings .pybuild/cpython3_3.13_pyranges/build/tests/test_unary.py: 5665 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/methods/init.py:187: FutureWarning: The default of observed=False is deprecated and will be changed to True in a future version of pandas. Pass observed=False to retain current behavior or observed=True to adopt the future default and silence this warning. empty_removed = df.groupby(["Chromosome", "Strand"]) .pybuild/cpython3_3.13_pyranges/build/tests/test_concat.py::test_concat_unstranded_stranded /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/methods/concat.py:47: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[NaN, NaN, NaN, '+', '-'] Categories (3, object): ['+', '-', '.']' has dtype incompatible with category, please explicitly cast to a compatible dtype first. v.loc[:, "Strand"] = type_v.cat.add_categories(["."]) .pybuild/cpython3_3.13_pyranges/build/tests/test_do_not_error.py: 7598 warnings .pybuild/cpython3_3.13_pyranges/build/tests/test_binary.py: 15120 warnings .pybuild/cpython3_3.13_pyranges/build/tests/test_unary.py: 18352 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/tostring2.py:31: FutureWarning: The behavior of DataFrame concatenation with empty or all-NA entries is deprecated. In a future version, this will no longer exclude empty or all-NA columns when determining the result dtypes. To retain the old behavior, exclude the relevant entries before the concat operation. df = pd.concat([plus, minus]) .pybuild/cpython3_3.13_pyranges/build/tests/test_do_not_error.py: 1455 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/pyranges.py:3779: FutureWarning: The behavior of Series.replace (and DataFrame.replace) with CategoricalDtype is deprecated. In a future version, replace will only be used for cases that preserve the categories. To change the categories, use ser.cat.rename_categories instead. other.Strand = other.Strand.replace({"+": "-", "-": "+"}) .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1217804. 1221351. 1223357. 1223968. 1227319. 1228946. 1232031.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000078808.16' 'ENSG00000078808.16' 'ENSG00000078808.16' 'ENSG00000078808.16' 'ENSG00000078808.16' 'ENSG00000078808.16']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1336515. 1337055. 1338183. 1338436. 1338653. 1339812. 1340190. 1340365. 1340503. 1342156. 1342484. 1342758. 1349350.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000107404.19' 'ENSG00000107404.19' 'ENSG00000107404.19' 'ENSG00000107404.19' 'ENSG00000107404.19' 'ENSG00000107404.19' 'ENSG00000107404.19' 'ENSG00000107404.19' 'ENSG00000107404.19' 'ENSG00000107404.19' 'ENSG00000107404.19' 'ENSG00000107404.19']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1311924. 1312147. 1313592. 1315697. 1317450. 1321096. 1321984. 1323287. 1324691.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000127054.20' 'ENSG00000127054.20' 'ENSG00000127054.20' 'ENSG00000127054.20' 'ENSG00000127054.20' 'ENSG00000127054.20' 'ENSG00000127054.20' 'ENSG00000127054.20']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1293708. 1293933. 1294199. 1294628. 1295008. 1295554. 1295938. 1296109. 1296280. 1296633. 1297933. 1298265. 1298421. 1299905. 1300068. 1300202. 1300692. 1302046. 1302975. 1305929. 1307156. 1307383. 1308018. 1309609.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1084506. 1085310. 1086012. 1087636. 1092294. 1092813. 1106127. 1106871. 1115075. 1116361.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000131591.17' 'ENSG00000131591.17' 'ENSG00000131591.17' 'ENSG00000131591.17' 'ENSG00000131591.17' 'ENSG00000131591.17' 'ENSG00000131591.17' 'ENSG00000131591.17' 'ENSG00000131591.17']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1472089. 1477350. 1478745. 1479108. 1480936. 1482303. 1482662. 1485171. 1486235. 1486668. 1487914. 1490671. 1497848.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000160072.19' 'ENSG00000160072.19' 'ENSG00000160072.19' 'ENSG00000160072.19' 'ENSG00000160072.19' 'ENSG00000160072.19' 'ENSG00000160072.19' 'ENSG00000160072.19' 'ENSG00000160072.19' 'ENSG00000160072.19' 'ENSG00000160072.19' 'ENSG00000160072.19']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1255487. 1256335. 1257130. 1257310. 1262390. 1263569. 1264830. 1266290. 1267992. 1271637. 1273885.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000160087.20' 'ENSG00000160087.20' 'ENSG00000160087.20' 'ENSG00000160087.20' 'ENSG00000160087.20' 'ENSG00000160087.20' 'ENSG00000160087.20' 'ENSG00000160087.20' 'ENSG00000160087.20' 'ENSG00000160087.20']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1173926. 1174321. 1174489. 1175034. 1179333. 1179853. 1180340. 1180884. 1181815. 1182446. 1183047. 1184091. 1185864. 1196488. 1196716. 1197186. 1197935.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000162571.13' 'ENSG00000162571.13' 'ENSG00000162571.13' 'ENSG00000162571.13' 'ENSG00000162571.13' 'ENSG00000162571.13' 'ENSG00000162571.13' 'ENSG00000162571.13' 'ENSG00000162571.13' 'ENSG00000162571.13' 'ENSG00000162571.13' 'ENSG00000162571.13' 'ENSG00000162571.13' 'ENSG00000162571.13' 'ENSG00000162571.13' 'ENSG00000162571.13']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1281610. 1282010. 1282319. 1284090. 1285664. 1286278. 1286975. 1287299. 1287836. 1288037. 1290388. 1290555. 1290694. 1290953. 1291140. 1292029.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000162572.20' 'ENSG00000162572.20' 'ENSG00000162572.20' 'ENSG00000162572.20' 'ENSG00000162572.20' 'ENSG00000162572.20' 'ENSG00000162572.20' 'ENSG00000162572.20' 'ENSG00000162572.20' 'ENSG00000162572.20' 'ENSG00000162572.20' 'ENSG00000162572.20' 'ENSG00000162572.20' 'ENSG00000162572.20' 'ENSG00000162572.20']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1353946. 1354106. 1354509. 1355752. 1356704. 1358794. 1361777.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000162576.16' 'ENSG00000162576.16' 'ENSG00000162576.16' 'ENSG00000162576.16' 'ENSG00000162576.16' 'ENSG00000162576.16']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1331536. 1331938. 1332806. 1333124. 1333379. 1335306.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000169962.4' 'ENSG00000169962.4' 'ENSG00000169962.4' 'ENSG00000169962.4' 'ENSG00000169962.4']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1308720. 1308972. 1309851. 1311071. 1311677.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000169972.11' 'ENSG00000169972.11' 'ENSG00000169972.11' 'ENSG00000169972.11']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1373902. 1375495.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000175756.13']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1235041.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 818202. 819837.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000177757.2']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1435146. 1435821. 1437484. 1442882.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000179403.11' 'ENSG00000179403.11' 'ENSG00000179403.11']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1242646. 1243552. 1244275. 1244724. 1246722.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000184163.3' 'ENSG00000184163.3' 'ENSG00000184163.3' 'ENSG00000184163.3']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 65433. 65573. 71585.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000186092.6' 'ENSG00000186092.6']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1211832. 1212138. 1212704. 1213785. 1214138.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000186827.10' 'ENSG00000186827.10' 'ENSG00000186827.10' 'ENSG00000186827.10']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1203968. 1204236. 1204486. 1205680. 1206691.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000186891.13' 'ENSG00000186891.13' 'ENSG00000186891.13' 'ENSG00000186891.13']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 966614. 966803. 970423. 970601. 971006. 971208. 971523. 972150. 972424. 973010. 973326. 973640. 974051. 974364. 975108. 975865.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000187583.10' 'ENSG00000187583.10' 'ENSG00000187583.10' 'ENSG00000187583.10' 'ENSG00000187583.10' 'ENSG00000187583.10' 'ENSG00000187583.10' 'ENSG00000187583.10' 'ENSG00000187583.10' 'ENSG00000187583.10' 'ENSG00000187583.10' 'ENSG00000187583.10' 'ENSG00000187583.10' 'ENSG00000187583.10' 'ENSG00000187583.10']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1001281. 1008279. 1013576. 1014540.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000187608.9' 'ENSG00000187608.9' 'ENSG00000187608.9']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 924948. 925189. 925800. 926013. 930336. 931089. 935896. 939129. 939460. 940462. 941306. 943058. 943377. 944581.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000187634.11' 'ENSG00000187634.11' 'ENSG00000187634.11' 'ENSG00000187634.11' 'ENSG00000187634.11' 'ENSG00000187634.11' 'ENSG00000187634.11' 'ENSG00000187634.11' 'ENSG00000187634.11' 'ENSG00000187634.11' 'ENSG00000187634.11' 'ENSG00000187634.11' 'ENSG00000187634.11']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 976269. 976641. 981029. 981173. 982093.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000187642.9' 'ENSG00000187642.9' 'ENSG00000187642.9' 'ENSG00000187642.9']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 960800. 961750. 962478. 962917. 963253. 963504. 964008. 964180. 964530. 965715.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000187961.13' 'ENSG00000187961.13' 'ENSG00000187961.13' 'ENSG00000187961.13' 'ENSG00000187961.13' 'ENSG00000187961.13' 'ENSG00000187961.13' 'ENSG00000187961.13' 'ENSG00000187961.13']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1020373. 1022462. 1034703. 1035324. 1040880. 1041397. 1041702. 1042162. 1043457. 1043732. 1044023. 1044257. 1044439. 1045277. 1045523. 1045876. 1046088. 1046349. 1046735. 1046957. 1047454. 1047687. 1047895. 1048365. 1049059. 1049451. 1049795. 1050037. 1050329. 1050591. 1050837. 1051043. 1051369. 1051645. 1051815. 1053977. 1054551. 1056118.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 999432. 1000172.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000188290.10']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 944800. 945146. 945422. 945653. 946286. 947060. 948232. 948603. 951238. 952139. 952600. 953288. 953892. 954523. 956013. 956215. 957025. 959081. 959309.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000188976.10' 'ENSG00000188976.10' 'ENSG00000188976.10' 'ENSG00000188976.10' 'ENSG00000188976.10' 'ENSG00000188976.10' 'ENSG00000188976.10' 'ENSG00000188976.10' 'ENSG00000188976.10' 'ENSG00000188976.10' 'ENSG00000188976.10' 'ENSG00000188976.10' 'ENSG00000188976.10' 'ENSG00000188976.10' 'ENSG00000188976.10' 'ENSG00000188976.10' 'ENSG00000188976.10' 'ENSG00000188976.10']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1512473. 1516088. 1517412. 1517775. 1518990. 1520306. 1520617.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000197785.13' 'ENSG00000197785.13' 'ENSG00000197785.13' 'ENSG00000197785.13' 'ENSG00000197785.13' 'ENSG00000197785.13' 'ENSG00000197785.13']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 634922.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1169087.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1426385. 1427787.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000205116.3']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1176396. 1179555.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000205231.1']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1167952.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1167198.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1450758. 1452122. 1452434. 1454500. 1455519. 1455916. 1456349. 1457180. 1459231. 1460917. 1462708. 1470158.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000215915.9' 'ENSG00000215915.9' 'ENSG00000215915.9' 'ENSG00000215915.9' 'ENSG00000215915.9' 'ENSG00000215915.9' 'ENSG00000215915.9' 'ENSG00000215915.9' 'ENSG00000215915.9' 'ENSG00000215915.9' 'ENSG00000215915.9']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1059846. 1060393. 1061117. 1063201. 1063566. 1064401. 1064589. 1065475. 1066456. 1066667. 1067646. 1068003. 1068724. 1069355.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000217801.9' 'ENSG00000217801.9' 'ENSG00000217801.9' 'ENSG00000217801.9' 'ENSG00000217801.9' 'ENSG00000217801.9' 'ENSG00000217801.9' 'ENSG00000217801.9' 'ENSG00000217801.9' 'ENSG00000217801.9' 'ENSG00000217801.9' 'ENSG00000217801.9' 'ENSG00000217801.9']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1387582. 1387869. 1388743. 1388830. 1389047. 1389473. 1390371. 1390563. 1392803. 1393460. 1395537. 1398366. 1398956. 1399328.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000221978.11' 'ENSG00000221978.11' 'ENSG00000221978.11' 'ENSG00000221978.11' 'ENSG00000221978.11' 'ENSG00000221978.11' 'ENSG00000221978.11' 'ENSG00000221978.11' 'ENSG00000221978.11' 'ENSG00000221978.11' 'ENSG00000221978.11' 'ENSG00000221978.11' 'ENSG00000221978.11']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 157887.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 758336.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1379032.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 921016.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1137110. 1141032. 1144056.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000223823.1' 'ENSG00000223823.1']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 12227. 12721. 13052. 14409.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000223972.5' 'ENSG00000223972.5' 'ENSG00000223972.5']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1325102. 1325595. 1327032. 1328897.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000224051.6' 'ENSG00000224051.6' 'ENSG00000224051.6']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1402046.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1012190. 1013193.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000224969.1']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1430954. 1431843. 1434573.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000225285.1' 'ENSG00000225285.1']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 630683.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 827522.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1420564. 1422691.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000225905.1']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 629433.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 14501. 15038. 15947. 16765. 17055. 17368. 17742. 18061. 18366. 24891. 29570.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000227232.5' 'ENSG00000227232.5' 'ENSG00000227232.5' 'ENSG00000227232.5' 'ENSG00000227232.5' 'ENSG00000227232.5' 'ENSG00000227232.5' 'ENSG00000227232.5' 'ENSG00000227232.5' 'ENSG00000227232.5']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 729804. 733364. 735613. 743350. 744391. 744825. 746818. 756141. 759123. 765247. 766387. 768613. 769712. 773107. 774280. 778626.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000228327.3' 'ENSG00000228327.3' 'ENSG00000228327.3' 'ENSG00000228327.3' 'ENSG00000228327.3' 'ENSG00000228327.3' 'ENSG00000228327.3' 'ENSG00000228327.3' 'ENSG00000228327.3' 'ENSG00000228327.3' 'ENSG00000228327.3' 'ENSG00000228327.3' 'ENSG00000228327.3' 'ENSG00000228327.3' 'ENSG00000228327.3']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 259025. 261634. 268204. 268816. 289370. 297502. 357586. 358183. 359681.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000228463.10' 'ENSG00000228463.10' 'ENSG00000228463.10' 'ENSG00000228463.10' 'ENSG00000228463.10' 'ENSG00000228463.10' 'ENSG00000228463.10' 'ENSG00000228463.10']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 825552. 826923. 827775. 827853. 829104. 831677. 842020. 847806. 849602. 850351. 852515. 852766. 859446.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000228794.8' 'ENSG00000228794.8' 'ENSG00000228794.8' 'ENSG00000228794.8' 'ENSG00000228794.8' 'ENSG00000228794.8' 'ENSG00000228794.8' 'ENSG00000228794.8' 'ENSG00000228794.8' 'ENSG00000228794.8' 'ENSG00000228794.8' 'ENSG00000228794.8']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 633438.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 724360. 724903.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000229376.3']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 761154. 761989.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000229905.1']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 586358. 586955. 588453. 594756. 598551. 601577. 608056. 612864. 627823. 628223. 629006. 631204. 633129. 698959. 702340. 703789. 711922. 720206. 724564. 732212. 733064. 827796.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000230021.10' 'ENSG00000230021.10' 'ENSG00000230021.10' 'ENSG00000230021.10' 'ENSG00000230021.10' 'ENSG00000230021.10' 'ENSG00000230021.10' 'ENSG00000230021.10' 'ENSG00000230021.10' 'ENSG00000230021.10' 'ENSG00000230021.10' 'ENSG00000230021.10' 'ENSG00000230021.10' 'ENSG00000230021.10' 'ENSG00000230021.10' 'ENSG00000230021.10' 'ENSG00000230021.10' 'ENSG00000230021.10' 'ENSG00000230021.10' 'ENSG00000230021.10' 'ENSG00000230021.10']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 801163. 805891. 808623. 810170. 817712.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000230092.7' 'ENSG00000230092.7' 'ENSG00000230092.7' 'ENSG00000230092.7']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 868675. 869575. 870201. 875155. 876903.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000230368.2' 'ENSG00000230368.2' 'ENSG00000230368.2' 'ENSG00000230368.2']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1275299. 1279393. 1280420.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000230415.1' 'ENSG00000230415.1']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 911473. 914948.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000230699.2']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1008229.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 489387. 489906.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000233653.3']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 134836.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 874349.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1419549. 1420592. 1421769.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000235098.8' 'ENSG00000235098.8']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 587729. 594768.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000235146.2']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 358957. 360168. 366052.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000236601.2' 'ENSG00000236601.2']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 348366.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 365692. 366151. 368450. 373323. 379972. 476945. 485208. 489553. 494898. 495049. 495476. 496605. 497299. 498305. 499369. 501620. 502243. 502955. 505103. 514423. 517266. 522928.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000237094.12' 'ENSG00000237094.12' 'ENSG00000237094.12' 'ENSG00000237094.12' 'ENSG00000237094.12' 'ENSG00000237094.12' 'ENSG00000237094.12' 'ENSG00000237094.12' 'ENSG00000237094.12' 'ENSG00000237094.12' 'ENSG00000237094.12' 'ENSG00000237094.12' 'ENSG00000237094.12' 'ENSG00000237094.12' 'ENSG00000237094.12' 'ENSG00000237094.12' 'ENSG00000237094.12' 'ENSG00000237094.12' 'ENSG00000237094.12' 'ENSG00000237094.12' 'ENSG00000237094.12']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1072575. 1074307.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000237330.2']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 779092. 782191. 783363. 784977. 787672. 793041. 795582. 801876. 803667. 804222. 805270. 806459. 807465. 810060.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000237491.8' 'ENSG00000237491.8' 'ENSG00000237491.8' 'ENSG00000237491.8' 'ENSG00000237491.8' 'ENSG00000237491.8' 'ENSG00000237491.8' 'ENSG00000237491.8' 'ENSG00000237491.8' 'ENSG00000237491.8' 'ENSG00000237491.8' 'ENSG00000237491.8' 'ENSG00000237491.8']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 35174. 35481. 36081.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000237613.2' 'ENSG00000237613.2']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 632616.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 91629. 92240. 111357. 112804. 120932. 129223. 133723.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000238009.6' 'ENSG00000238009.6' 'ENSG00000238009.6' 'ENSG00000238009.6' 'ENSG00000238009.6' 'ENSG00000238009.6']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 139847. 140339.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000239906.1']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 90050. 91105.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000239945.1']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 57653. 58856. 64116.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000240361.2' 'ENSG00000240361.2']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 633741.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1317899. 1318689.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000240731.1']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 914444. 914971.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000241180.1']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 160690. 161525.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000241599.1']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 143011. 149707. 155831. 164791. 165942. 168165. 168767. 169264. 172688. 173862.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000241860.6' 'ENSG00000241860.6' 'ENSG00000241860.6' 'ENSG00000241860.6' 'ENSG00000241860.6' 'ENSG00000241860.6' 'ENSG00000241860.6' 'ENSG00000241860.6' 'ENSG00000241860.6']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1402601. 1407019. 1407313.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000242485.5' 'ENSG00000242485.5']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1055215. 1056116.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000242590.1']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 30039. 30667. 31109.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000243485.5' 'ENSG00000243485.5']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 634376.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 491989. 493241.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000250575.1']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1251334.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1405752.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 53312.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 675265.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 135895.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 440232.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 137965.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1170343.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 904957. 915976.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000272438.1']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1410618.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 998051.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1062808. 1063288.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000273443.1']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 187958.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1296170.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 17436.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 516479.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 632413.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 185350. 185559. 186469. 187287. 187577. 187890. 188266. 188584. 188902. 195411.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000279457.4' 'ENSG00000279457.4' 'ENSG00000279457.4' 'ENSG00000279457.4' 'ENSG00000279457.4' 'ENSG00000279457.4' 'ENSG00000279457.4' 'ENSG00000279457.4' 'ENSG00000279457.4']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 182746. 183216. 183571. 183901. 184174.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000279928.2' 'ENSG00000279928.2' 'ENSG00000279928.2' 'ENSG00000279928.2']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 874591. 875155. 875625. 876611. 877234.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000283040.1' 'ENSG00000283040.1' 'ENSG00000283040.1' 'ENSG00000283040.1']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1312566.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 30503.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1339708.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 686673.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 451697.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1503661. 1509452.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000284740.1']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 782050.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1098113. 1104598.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000285812.1']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.13_pyranges/build/tests/test_unary.py: 2000 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_unary.py:153: FutureWarning: A value is trying to be set on a copy of a DataFrame or Series through chained assignment using an inplace method. The behavior will change in pandas 3.0. This inplace method will never work because the intermediate object on which we are setting values always behaves as a copy. For example, when doing 'df[col].method(value, inplace=True)', try using 'df.method({col: value}, inplace=True)' or df[col] = df[col].method(value) instead, to perform the operation inplace on the original object. result_df.Cluster.replace(cluster_ids, inplace=True) .pybuild/cpython3_3.13_pyranges/build/tests/test_unary.py: 2000 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_unary.py:178: FutureWarning: The default of observed=False is deprecated and will be changed to True in a future version of pandas. Pass observed=False to retain current behavior or observed=True to adopt the future default and silence this warning. for _, gdf in natsorted(df.groupby(groupby)): -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html =========================== short test summary info ============================ FAILED tests/test_binary.py::test_k_nearest[None-False-opposite-last] - Value... ========= 1 failed, 530 passed, 413275 warnings in 2289.22s (0:38:09) ========== E: pybuild pybuild:389: test: plugin distutils failed with: exit code=1: cd /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build; python3.13 -m pytest -v -n 20 I: pybuild pybuild:308: mkdir -pv /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges && cp -av /build/reproducible-path/pyranges-0.0.111+ds/tests/*.bed /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests && cp -av /build/reproducible-path/pyranges-0.0.111+ds/tests/test_data /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests && cp -av /build/reproducible-path/pyranges-0.0.111+ds/tests/data /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests && cp -av /build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges '/build/reproducible-path/pyranges-0.0.111+ds/tests/chip_10.bed' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/chip_10.bed' '/build/reproducible-path/pyranges-0.0.111+ds/tests/f1.bed' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/f1.bed' '/build/reproducible-path/pyranges-0.0.111+ds/tests/f2.bed' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/f2.bed' '/build/reproducible-path/pyranges-0.0.111+ds/tests/test_data' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_data' '/build/reproducible-path/pyranges-0.0.111+ds/tests/test_data/ensembl.gtf' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_data/ensembl.gtf' '/build/reproducible-path/pyranges-0.0.111+ds/tests/test_data/gencode.gff3' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_data/gencode.gff3' '/build/reproducible-path/pyranges-0.0.111+ds/tests/test_data/ucsc_df_to_parse.txt' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_data/ucsc_df_to_parse.txt' '/build/reproducible-path/pyranges-0.0.111+ds/tests/test_data/test_sorted.bam' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_data/test_sorted.bam' '/build/reproducible-path/pyranges-0.0.111+ds/tests/test_data/test_sorted.bam.bai' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_data/test_sorted.bam.bai' '/build/reproducible-path/pyranges-0.0.111+ds/tests/data' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/data' '/build/reproducible-path/pyranges-0.0.111+ds/tests/data/test_data.py' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/data/test_data.py' '/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/chipseq_background.bed' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/example_data/chipseq_background.bed' '/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/ensembl.gtf' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/example_data/ensembl.gtf' '/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/ucsc_human.bed.gz' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/example_data/ucsc_human.bed.gz' '/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/aorta.bed' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/example_data/aorta.bed' '/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/ensembl_human.gtf.gz' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/example_data/ensembl_human.gtf.gz' '/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/exons.bed' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/example_data/exons.bed' '/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/f2.bed' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/example_data/f2.bed' '/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/bw.bw' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/example_data/bw.bw' '/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/f1.bed' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/example_data/f1.bed' '/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/cpg.bed' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/example_data/cpg.bed' '/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/lamina.bed' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/example_data/lamina.bed' '/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/gencode_human.gtf.gz' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/example_data/gencode_human.gtf.gz' '/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/chipseq.bed' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/example_data/chipseq.bed' '/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/chromsizes.bed' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/example_data/chromsizes.bed' '/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/aorta2.bed' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/example_data/aorta2.bed' '/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/control.bam' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/example_data/control.bam' '/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/control.bam.bai' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/example_data/control.bam.bai' I: pybuild base:311: cd /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build; python3.12 -m pytest -v -n 20 ============================= test session starts ============================== platform linux -- Python 3.12.8, pytest-8.3.4, pluggy-1.5.0 -- /usr/bin/python3.12 cachedir: .pytest_cache hypothesis profile 'default' -> database=DirectoryBasedExampleDatabase(PosixPath('/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/.hypothesis/examples')) rootdir: /build/reproducible-path/pyranges-0.0.111+ds plugins: hypothesis-6.122.1, xdist-3.6.1, typeguard-4.4.1 created: 20/20 workers 20 workers [531 items] scheduling tests via LoadScheduling tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain37-method_chain37] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain25-method_chain25] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain31-method_chain31] tests/test_binary.py::test_coverage[same] tests/test_binary.py::test_nearest[downstream-True-same] tests/test_binary.py::test_jaccard[same] tests/test_change_chromosome_custom.py::test_change_chromosomes tests/test_binary.py::test_nearest[None-True-same] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain13-method_chain13] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain43-method_chain43] tests/test_binary.py::test_overlap[same] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain7-method_chain7] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain19-method_chain19] tests/test_binary.py::test_nearest[upstream-True-same] tests/data/test_data.py::test_all_data tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain49-method_chain49] tests/test_binary.py::test_k_nearest[upstream-False-same-last] tests/test_binary.py::test_k_nearest[downstream-False-same-last] tests/test_binary.py::test_k_nearest[None-False-same-last] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain1-method_chain1] [gw10] [ 0%] PASSED tests/test_change_chromosome_custom.py::test_change_chromosomes tests/test_concat.py::test_concat_stranded_unstranded [gw10] [ 0%] PASSED tests/test_concat.py::test_concat_stranded_unstranded tests/test_concat.py::test_concat_unstranded_unstranded [gw10] [ 0%] PASSED tests/test_concat.py::test_concat_unstranded_unstranded tests/test_concat.py::test_concat_unstranded_stranded [gw10] [ 0%] PASSED tests/test_concat.py::test_concat_unstranded_stranded tests/test_count_overlaps.py::test_strand_vs_strand_same [gw0] [ 0%] PASSED tests/data/test_data.py::test_all_data tests/test_binary.py::test_set_intersect[False] [gw10] [ 1%] PASSED tests/test_count_overlaps.py::test_strand_vs_strand_same tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain0-method_chain0] [gw14] [ 1%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain25-method_chain25] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain26-method_chain26] [gw17] [ 1%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain43-method_chain43] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain44-method_chain44] [gw13] [ 1%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain13-method_chain13] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain14-method_chain14] [gw16] [ 1%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain31-method_chain31] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain32-method_chain32] [gw15] [ 2%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain19-method_chain19] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain20-method_chain20] [gw18] [ 2%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain37-method_chain37] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain38-method_chain38] [gw11] [ 2%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain1-method_chain1] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain2-method_chain2] [gw12] [ 2%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain7-method_chain7] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain8-method_chain8] [gw19] [ 2%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain49-method_chain49] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain50-method_chain50] [gw10] [ 3%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain0-method_chain0] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain55-method_chain55] [gw17] [ 3%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain44-method_chain44] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain45-method_chain45] [gw16] [ 3%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain32-method_chain32] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain33-method_chain33] [gw15] [ 3%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain20-method_chain20] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain21-method_chain21] [gw14] [ 3%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain26-method_chain26] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain27-method_chain27] [gw13] [ 3%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain14-method_chain14] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain15-method_chain15] [gw11] [ 4%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain2-method_chain2] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain3-method_chain3] [gw12] [ 4%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain8-method_chain8] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain9-method_chain9] [gw17] [ 4%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain45-method_chain45] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain46-method_chain46] [gw10] [ 4%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain55-method_chain55] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain56-method_chain56] [gw18] [ 4%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain38-method_chain38] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain39-method_chain39] [gw19] [ 5%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain50-method_chain50] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain51-method_chain51] [gw14] [ 5%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain27-method_chain27] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain28-method_chain28] [gw15] [ 5%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain21-method_chain21] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain22-method_chain22] [gw16] [ 5%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain33-method_chain33] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain34-method_chain34] [gw13] [ 5%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain15-method_chain15] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain16-method_chain16] [gw17] [ 6%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain46-method_chain46] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain47-method_chain47] [gw12] [ 6%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain9-method_chain9] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain10-method_chain10] [gw11] [ 6%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain3-method_chain3] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain4-method_chain4] [gw10] [ 6%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain56-method_chain56] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain57-method_chain57] [gw19] [ 6%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain51-method_chain51] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain52-method_chain52] [gw16] [ 6%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain34-method_chain34] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain35-method_chain35] [gw13] [ 7%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain16-method_chain16] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain17-method_chain17] [gw14] [ 7%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain28-method_chain28] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain29-method_chain29] [gw18] [ 7%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain39-method_chain39] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain40-method_chain40] [gw15] [ 7%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain22-method_chain22] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain23-method_chain23] [gw17] [ 7%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain47-method_chain47] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain48-method_chain48] [gw12] [ 8%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain10-method_chain10] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain11-method_chain11] [gw11] [ 8%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain4-method_chain4] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain5-method_chain5] [gw10] [ 8%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain57-method_chain57] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain58-method_chain58] [gw14] [ 8%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain29-method_chain29] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain30-method_chain30] [gw13] [ 8%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain17-method_chain17] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain18-method_chain18] [gw15] [ 9%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain23-method_chain23] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain24-method_chain24] [gw17] [ 9%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain48-method_chain48] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain64-method_chain64] [gw19] [ 9%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain52-method_chain52] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain53-method_chain53] [gw12] [ 9%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain11-method_chain11] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain12-method_chain12] [gw18] [ 9%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain40-method_chain40] [gw16] [ 9%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain35-method_chain35] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain41-method_chain41] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain36-method_chain36] [gw13] [ 10%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain18-method_chain18] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain81-method_chain81] [gw10] [ 10%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain58-method_chain58] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain59-method_chain59] [gw14] [ 10%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain30-method_chain30] [gw15] [ 10%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain24-method_chain24] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain89-method_chain89] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain73-method_chain73] [gw17] [ 10%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain64-method_chain64] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain65-method_chain65] [gw19] [ 11%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain53-method_chain53] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain54-method_chain54] [gw11] [ 11%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain5-method_chain5] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain6-method_chain6] [gw13] [ 11%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain81-method_chain81] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain82-method_chain82] [gw12] [ 11%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain12-method_chain12] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain97-method_chain97] [gw18] [ 11%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain41-method_chain41] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain42-method_chain42] [gw14] [ 12%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain73-method_chain73] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain74-method_chain74] [gw16] [ 12%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain36-method_chain36] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain105-method_chain105] [gw10] [ 12%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain59-method_chain59] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain60-method_chain60] [gw17] [ 12%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain65-method_chain65] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain66-method_chain66] [gw11] [ 12%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain6-method_chain6] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain120-method_chain120] [gw12] [ 12%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain97-method_chain97] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain98-method_chain98] [gw15] [ 13%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain89-method_chain89] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain90-method_chain90] [gw19] [ 13%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain54-method_chain54] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain113-method_chain113] [gw13] [ 13%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain82-method_chain82] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain83-method_chain83] [gw14] [ 13%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain74-method_chain74] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain75-method_chain75] [gw17] [ 13%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain66-method_chain66] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain67-method_chain67] [gw18] [ 14%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain42-method_chain42] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain127-method_chain127] [gw10] [ 14%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain60-method_chain60] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain61-method_chain61] [gw16] [ 14%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain105-method_chain105] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain106-method_chain106] [gw5] [ 14%] PASSED tests/test_binary.py::test_jaccard[same] tests/test_binary.py::test_join[False] [gw11] [ 14%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain120-method_chain120] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain121-method_chain121] [gw19] [ 15%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain113-method_chain113] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain114-method_chain114] [gw13] [ 15%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain83-method_chain83] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain84-method_chain84] [gw17] [ 15%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain67-method_chain67] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain68-method_chain68] [gw18] [ 15%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain127-method_chain127] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain128-method_chain128] [gw14] [ 15%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain75-method_chain75] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain76-method_chain76] [gw15] [ 16%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain90-method_chain90] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain91-method_chain91] [gw10] [ 16%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain61-method_chain61] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain62-method_chain62] [gw16] [ 16%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain106-method_chain106] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain107-method_chain107] [gw12] [ 16%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain98-method_chain98] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain99-method_chain99] [gw11] [ 16%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain121-method_chain121] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain122-method_chain122] [gw19] [ 16%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain114-method_chain114] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain115-method_chain115] [gw17] [ 17%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain68-method_chain68] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain69-method_chain69] [gw18] [ 17%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain128-method_chain128] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain129-method_chain129] [gw13] [ 17%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain84-method_chain84] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain85-method_chain85] [gw14] [ 17%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain76-method_chain76] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain77-method_chain77] [gw10] [ 17%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain62-method_chain62] [gw15] [ 18%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain91-method_chain91] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain63-method_chain63] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain92-method_chain92] [gw16] [ 18%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain107-method_chain107] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain108-method_chain108] [gw12] [ 18%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain99-method_chain99] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain100-method_chain100] [gw19] [ 18%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain115-method_chain115] [gw11] [ 18%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain122-method_chain122] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain116-method_chain116] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain123-method_chain123] [gw18] [ 19%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain129-method_chain129] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain130-method_chain130] [gw17] [ 19%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain69-method_chain69] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain70-method_chain70] [gw14] [ 19%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain77-method_chain77] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain78-method_chain78] [gw10] [ 19%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain63-method_chain63] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain134-method_chain134] [gw15] [ 19%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain92-method_chain92] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain93-method_chain93] [gw11] [ 19%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain123-method_chain123] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain124-method_chain124] [gw16] [ 20%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain108-method_chain108] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain109-method_chain109] [gw19] [ 20%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain116-method_chain116] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain117-method_chain117] [gw12] [ 20%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain100-method_chain100] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain101-method_chain101] [gw18] [ 20%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain130-method_chain130] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain131-method_chain131] [gw13] [ 20%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain85-method_chain85] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain86-method_chain86] [gw17] [ 21%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain70-method_chain70] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain71-method_chain71] [gw14] [ 21%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain78-method_chain78] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain79-method_chain79] [gw15] [ 21%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain93-method_chain93] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain94-method_chain94] [gw1] [ 21%] PASSED tests/test_binary.py::test_overlap[same] tests/test_binary.py::test_overlap[opposite] [gw16] [ 21%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain109-method_chain109] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain110-method_chain110] [gw19] [ 22%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain117-method_chain117] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain118-method_chain118] [gw11] [ 22%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain124-method_chain124] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain125-method_chain125] [gw18] [ 22%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain131-method_chain131] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain132-method_chain132] [gw12] [ 22%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain101-method_chain101] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain102-method_chain102] [gw10] [ 22%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain134-method_chain134] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain135-method_chain135] [gw14] [ 22%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain79-method_chain79] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain80-method_chain80] [gw13] [ 23%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain86-method_chain86] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain87-method_chain87] [gw15] [ 23%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain94-method_chain94] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain95-method_chain95] [gw17] [ 23%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain71-method_chain71] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain72-method_chain72] [gw19] [ 23%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain118-method_chain118] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain119-method_chain119] [gw18] [ 23%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain132-method_chain132] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain133-method_chain133] [gw11] [ 24%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain125-method_chain125] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain126-method_chain126] [gw14] [ 24%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain80-method_chain80] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain141-method_chain141] [gw16] [ 24%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain110-method_chain110] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain111-method_chain111] [gw12] [ 24%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain102-method_chain102] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain103-method_chain103] [gw15] [ 24%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain95-method_chain95] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain96-method_chain96] [gw17] [ 25%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain72-method_chain72] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain148-method_chain148] [gw10] [ 25%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain135-method_chain135] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain136-method_chain136] [gw13] [ 25%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain87-method_chain87] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain88-method_chain88] [gw14] [ 25%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain141-method_chain141] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain142-method_chain142] [gw19] [ 25%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain119-method_chain119] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain154-method_chain154] [gw11] [ 25%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain126-method_chain126] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain166-method_chain166] [gw16] [ 26%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain111-method_chain111] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain112-method_chain112] [gw15] [ 26%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain96-method_chain96] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain172-method_chain172] [gw18] [ 26%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain133-method_chain133] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain160-method_chain160] [gw12] [ 26%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain103-method_chain103] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain104-method_chain104] [gw13] [ 26%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain88-method_chain88] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain178-method_chain178] [gw14] [ 27%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain142-method_chain142] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain143-method_chain143] [gw10] [ 27%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain136-method_chain136] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain137-method_chain137] [gw11] [ 27%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain166-method_chain166] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain167-method_chain167] [gw17] [ 27%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain148-method_chain148] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain149-method_chain149] [gw15] [ 27%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain172-method_chain172] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain173-method_chain173] [gw6] [ 28%] PASSED tests/test_binary.py::test_nearest[upstream-True-same] tests/test_binary.py::test_nearest[upstream-True-opposite] [gw19] [ 28%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain154-method_chain154] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain155-method_chain155] [gw18] [ 28%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain160-method_chain160] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain161-method_chain161] [gw2] [ 28%] PASSED tests/test_binary.py::test_nearest[None-True-same] tests/test_binary.py::test_nearest[None-True-opposite] [gw16] [ 28%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain112-method_chain112] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain184-method_chain184] [gw13] [ 29%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain178-method_chain178] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain179-method_chain179] [gw9] [ 29%] PASSED tests/test_binary.py::test_k_nearest[upstream-False-same-last] tests/test_binary.py::test_k_nearest[upstream-False-False-last] [gw14] [ 29%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain143-method_chain143] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain144-method_chain144] [gw12] [ 29%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain104-method_chain104] [gw11] [ 29%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain167-method_chain167] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain190-method_chain190] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain168-method_chain168] [gw7] [ 29%] PASSED tests/test_binary.py::test_nearest[downstream-True-same] [gw0] [ 30%] PASSED tests/test_binary.py::test_set_intersect[False] tests/test_binary.py::test_nearest[downstream-True-opposite] tests/test_binary.py::test_set_intersect[same] [gw15] [ 30%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain173-method_chain173] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain174-method_chain174] [gw10] [ 30%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain137-method_chain137] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain138-method_chain138] [gw4] [ 30%] PASSED tests/test_binary.py::test_k_nearest[downstream-False-same-last] tests/test_binary.py::test_k_nearest[downstream-False-False-last] [gw19] [ 30%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain155-method_chain155] [gw17] [ 31%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain149-method_chain149] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain156-method_chain156] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain150-method_chain150] [gw13] [ 31%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain179-method_chain179] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain180-method_chain180] [gw18] [ 31%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain161-method_chain161] [gw14] [ 31%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain144-method_chain144] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain162-method_chain162] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain145-method_chain145] [gw12] [ 31%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain190-method_chain190] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain191-method_chain191] [gw11] [ 32%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain168-method_chain168] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain169-method_chain169] [gw15] [ 32%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain174-method_chain174] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain175-method_chain175] [gw8] [ 32%] PASSED tests/test_binary.py::test_k_nearest[None-False-same-last] [gw16] [ 32%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain184-method_chain184] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain185-method_chain185] tests/test_binary.py::test_k_nearest[None-False-False-last] [gw19] [ 32%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain156-method_chain156] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain157-method_chain157] [gw13] [ 32%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain180-method_chain180] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain181-method_chain181] [gw3] [ 33%] PASSED tests/test_binary.py::test_coverage[same] tests/test_binary.py::test_coverage[opposite] [gw12] [ 33%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain191-method_chain191] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain192-method_chain192] [gw18] [ 33%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain162-method_chain162] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain163-method_chain163] [gw14] [ 33%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain145-method_chain145] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain146-method_chain146] [gw11] [ 33%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain169-method_chain169] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain170-method_chain170] [gw17] [ 34%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain150-method_chain150] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain151-method_chain151] [gw15] [ 34%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain175-method_chain175] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain176-method_chain176] [gw10] [ 34%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain138-method_chain138] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain139-method_chain139] [gw16] [ 34%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain185-method_chain185] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain186-method_chain186] [gw12] [ 34%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain192-method_chain192] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain193-method_chain193] [gw13] [ 35%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain181-method_chain181] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain182-method_chain182] [gw19] [ 35%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain157-method_chain157] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain158-method_chain158] [gw14] [ 35%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain146-method_chain146] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain147-method_chain147] [gw18] [ 35%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain163-method_chain163] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain164-method_chain164] [gw11] [ 35%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain170-method_chain170] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain171-method_chain171] [gw15] [ 35%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain176-method_chain176] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain177-method_chain177] [gw17] [ 36%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain151-method_chain151] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain152-method_chain152] [gw12] [ 36%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain193-method_chain193] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain194-method_chain194] [gw5] [ 36%] PASSED tests/test_binary.py::test_join[False] [gw19] [ 36%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain158-method_chain158] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain159-method_chain159] tests/test_binary.py::test_join[same] [gw18] [ 36%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain164-method_chain164] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain165-method_chain165] [gw10] [ 37%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain139-method_chain139] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain140-method_chain140] [gw16] [ 37%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain186-method_chain186] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain187-method_chain187] [gw11] [ 37%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain171-method_chain171] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain200-method_chain200] [gw15] [ 37%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain177-method_chain177] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain205-method_chain205] [gw13] [ 37%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain182-method_chain182] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain183-method_chain183] [gw12] [ 38%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain194-method_chain194] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain210-method_chain210] [gw14] [ 38%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain147-method_chain147] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain195-method_chain195] [gw18] [ 38%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain165-method_chain165] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain220-method_chain220] [gw19] [ 38%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain159-method_chain159] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain215-method_chain215] [gw10] [ 38%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain140-method_chain140] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain225-method_chain225] [gw15] [ 38%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain205-method_chain205] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain206-method_chain206] [gw11] [ 39%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain200-method_chain200] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain201-method_chain201] [gw14] [ 39%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain195-method_chain195] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain196-method_chain196] [gw17] [ 39%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain152-method_chain152] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain153-method_chain153] [gw12] [ 39%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain210-method_chain210] [gw1] [ 39%] PASSED tests/test_binary.py::test_overlap[opposite] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain211-method_chain211] tests/test_binary.py::test_intersect[False] [gw16] [ 40%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain187-method_chain187] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain188-method_chain188] [gw18] [ 40%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain220-method_chain220] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain221-method_chain221] [gw19] [ 40%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain215-method_chain215] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain216-method_chain216] [gw13] [ 40%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain183-method_chain183] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain230-method_chain230] [gw10] [ 40%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain225-method_chain225] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain226-method_chain226] [gw15] [ 41%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain206-method_chain206] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain207-method_chain207] [gw12] [ 41%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain211-method_chain211] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain212-method_chain212] [gw17] [ 41%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain153-method_chain153] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain234-method_chain234] [gw18] [ 41%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain221-method_chain221] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain222-method_chain222] [gw19] [ 41%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain216-method_chain216] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain217-method_chain217] [gw13] [ 41%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain230-method_chain230] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain231-method_chain231] [gw10] [ 42%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain226-method_chain226] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain227-method_chain227] [gw14] [ 42%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain196-method_chain196] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain197-method_chain197] [gw11] [ 42%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain201-method_chain201] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain202-method_chain202] [gw16] [ 42%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain188-method_chain188] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain189-method_chain189] [gw15] [ 42%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain207-method_chain207] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain208-method_chain208] [gw12] [ 43%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain212-method_chain212] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain213-method_chain213] [gw18] [ 43%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain222-method_chain222] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain223-method_chain223] [gw10] [ 43%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain227-method_chain227] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain228-method_chain228] [gw19] [ 43%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain217-method_chain217] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain218-method_chain218] [gw16] [ 43%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain189-method_chain189] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain238-method_chain238] [gw17] [ 44%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain234-method_chain234] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain235-method_chain235] [gw11] [ 44%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain202-method_chain202] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain203-method_chain203] [gw15] [ 44%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain208-method_chain208] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain209-method_chain209] [gw13] [ 44%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain231-method_chain231] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain232-method_chain232] [gw12] [ 44%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain213-method_chain213] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain214-method_chain214] [gw18] [ 45%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain223-method_chain223] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain224-method_chain224] [gw14] [ 45%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain197-method_chain197] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain198-method_chain198] [gw10] [ 45%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain228-method_chain228] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain229-method_chain229] [gw19] [ 45%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain218-method_chain218] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain219-method_chain219] [gw16] [ 45%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain238-method_chain238] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain239-method_chain239] [gw12] [ 45%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain214-method_chain214] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain246-method_chain246] [gw17] [ 46%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain235-method_chain235] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain236-method_chain236] [gw11] [ 46%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain203-method_chain203] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain204-method_chain204] [gw15] [ 46%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain209-method_chain209] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain242-method_chain242] [gw18] [ 46%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain224-method_chain224] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain250-method_chain250] [gw10] [ 46%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain229-method_chain229] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain254-method_chain254] [gw13] [ 47%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain232-method_chain232] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain233-method_chain233] [gw19] [ 47%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain219-method_chain219] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain258-method_chain258] [gw14] [ 47%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain198-method_chain198] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain199-method_chain199] [gw16] [ 47%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain239-method_chain239] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain240-method_chain240] [gw15] [ 47%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain242-method_chain242] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain243-method_chain243] [gw11] [ 48%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain204-method_chain204] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain262-method_chain262] [gw12] [ 48%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain246-method_chain246] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain247-method_chain247] [gw10] [ 48%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain254-method_chain254] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain255-method_chain255] [gw19] [ 48%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain258-method_chain258] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain259-method_chain259] [gw17] [ 48%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain236-method_chain236] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain237-method_chain237] [gw13] [ 48%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain233-method_chain233] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain266-method_chain266] [gw16] [ 49%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain240-method_chain240] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain241-method_chain241] [gw18] [ 49%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain250-method_chain250] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain251-method_chain251] [gw15] [ 49%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain243-method_chain243] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain244-method_chain244] [gw11] [ 49%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain262-method_chain262] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain263-method_chain263] [gw14] [ 49%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain199-method_chain199] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain270-method_chain270] [gw10] [ 50%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain255-method_chain255] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain256-method_chain256] [gw12] [ 50%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain247-method_chain247] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain248-method_chain248] [gw19] [ 50%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain259-method_chain259] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain260-method_chain260] [gw16] [ 50%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain241-method_chain241] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain276-method_chain276] [gw15] [ 50%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain244-method_chain244] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain245-method_chain245] [gw13] [ 51%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain266-method_chain266] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain267-method_chain267] [gw6] [ 51%] PASSED tests/test_binary.py::test_nearest[upstream-True-opposite] [gw11] [ 51%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain263-method_chain263] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain264-method_chain264] tests/test_binary.py::test_nearest[upstream-False-False] [gw17] [ 51%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain237-method_chain237] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain273-method_chain273] [gw14] [ 51%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain270-method_chain270] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain271-method_chain271] [gw18] [ 51%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain251-method_chain251] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain252-method_chain252] [gw7] [ 52%] PASSED tests/test_binary.py::test_nearest[downstream-True-opposite] tests/test_binary.py::test_nearest[downstream-False-False] [gw2] [ 52%] PASSED tests/test_binary.py::test_nearest[None-True-opposite] tests/test_binary.py::test_nearest[None-False-False] [gw10] [ 52%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain256-method_chain256] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain257-method_chain257] [gw16] [ 52%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain276-method_chain276] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain277-method_chain277] [gw19] [ 52%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain260-method_chain260] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain261-method_chain261] [gw11] [ 53%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain264-method_chain264] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain265-method_chain265] [gw13] [ 53%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain267-method_chain267] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain268-method_chain268] [gw12] [ 53%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain248-method_chain248] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain249-method_chain249] [gw17] [ 53%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain273-method_chain273] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain274-method_chain274] [gw14] [ 53%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain271-method_chain271] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain272-method_chain272] [gw16] [ 54%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain277-method_chain277] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain278-method_chain278] [gw19] [ 54%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain261-method_chain261] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain285-method_chain285] [gw18] [ 54%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain252-method_chain252] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain253-method_chain253] [gw0] [ 54%] PASSED tests/test_binary.py::test_set_intersect[same] tests/test_binary.py::test_set_union[False] [gw10] [ 54%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain257-method_chain257] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain282-method_chain282] [gw15] [ 54%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain245-method_chain245] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain279-method_chain279] [gw11] [ 55%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain265-method_chain265] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain288-method_chain288] [gw13] [ 55%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain268-method_chain268] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain269-method_chain269] [gw17] [ 55%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain274-method_chain274] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain275-method_chain275] [gw14] [ 55%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain272-method_chain272] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain294-method_chain294] [gw16] [ 55%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain278-method_chain278] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain297-method_chain297] [gw12] [ 56%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain249-method_chain249] [gw15] [ 56%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain279-method_chain279] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain280-method_chain280] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain291-method_chain291] [gw11] [ 56%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain288-method_chain288] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain289-method_chain289] [gw18] [ 56%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain253-method_chain253] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain300-method_chain300] [gw9] [ 56%] PASSED tests/test_binary.py::test_k_nearest[upstream-False-False-last] [gw17] [ 57%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain275-method_chain275] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain306-method_chain306] tests/test_binary.py::test_k_nearest[upstream-True-opposite-last] [gw5] [ 57%] PASSED tests/test_binary.py::test_join[same] [gw10] [ 57%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain282-method_chain282] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain283-method_chain283] [gw13] [ 57%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain269-method_chain269] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain303-method_chain303] tests/test_binary.py::test_join[opposite] [gw12] [ 57%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain291-method_chain291] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain292-method_chain292] [gw11] [ 58%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain289-method_chain289] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain290-method_chain290] [gw19] [ 58%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain285-method_chain285] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain286-method_chain286] [gw16] [ 58%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain297-method_chain297] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain298-method_chain298] [gw14] [ 58%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain294-method_chain294] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain295-method_chain295] [gw4] [ 58%] PASSED tests/test_binary.py::test_k_nearest[downstream-False-False-last] tests/test_binary.py::test_k_nearest[downstream-True-opposite-last] [gw17] [ 58%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain306-method_chain306] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain307-method_chain307] [gw13] [ 59%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain303-method_chain303] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain304-method_chain304] [gw18] [ 59%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain300-method_chain300] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain301-method_chain301] [gw12] [ 59%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain292-method_chain292] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain293-method_chain293] [gw15] [ 59%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain280-method_chain280] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain281-method_chain281] [gw11] [ 59%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain290-method_chain290] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain309-method_chain309] [gw1] [ 60%] PASSED tests/test_binary.py::test_intersect[False] [gw10] [ 60%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain283-method_chain283] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain284-method_chain284] tests/test_binary.py::test_intersect[same] [gw19] [ 60%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain286-method_chain286] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain287-method_chain287] [gw14] [ 60%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain295-method_chain295] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain296-method_chain296] [gw18] [ 60%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain301-method_chain301] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain302-method_chain302] [gw17] [ 61%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain307-method_chain307] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain308-method_chain308] [gw16] [ 61%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain298-method_chain298] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain299-method_chain299] [gw13] [ 61%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain304-method_chain304] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain305-method_chain305] [gw12] [ 61%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain293-method_chain293] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain311-method_chain311] [gw11] [ 61%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain309-method_chain309] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain310-method_chain310] [gw15] [ 61%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain281-method_chain281] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain313-method_chain313] [gw10] [ 62%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain284-method_chain284] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain315-method_chain315] [gw3] [ 62%] PASSED tests/test_binary.py::test_coverage[opposite] tests/test_binary.py::test_subtraction[same] [gw8] [ 62%] PASSED tests/test_binary.py::test_k_nearest[None-False-False-last] [gw12] [ 62%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain311-method_chain311] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain312-method_chain312] tests/test_binary.py::test_k_nearest[None-True-opposite-last] [gw17] [ 62%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain308-method_chain308] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain323-method_chain323] [gw18] [ 63%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain302-method_chain302] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain321-method_chain321] [gw14] [ 63%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain296-method_chain296] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain319-method_chain319] [gw13] [ 63%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain305-method_chain305] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain327-method_chain327] [gw19] [ 63%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain287-method_chain287] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain317-method_chain317] [gw11] [ 63%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain310-method_chain310] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain329-method_chain329] [gw16] [ 64%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain299-method_chain299] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain325-method_chain325] [gw15] [ 64%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain313-method_chain313] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain314-method_chain314] [gw12] [ 64%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain312-method_chain312] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain331-method_chain331] [gw17] [ 64%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain323-method_chain323] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain324-method_chain324] [gw14] [ 64%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain319-method_chain319] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain320-method_chain320] [gw18] [ 64%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain321-method_chain321] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain322-method_chain322] [gw10] [ 65%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain315-method_chain315] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain316-method_chain316] [gw19] [ 65%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain317-method_chain317] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain318-method_chain318] [gw13] [ 65%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain327-method_chain327] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain328-method_chain328] [gw16] [ 65%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain325-method_chain325] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain326-method_chain326] [gw15] [ 65%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain314-method_chain314] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain333-method_chain333] [gw17] [ 66%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain324-method_chain324] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain335-method_chain335] [gw11] [ 66%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain329-method_chain329] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain330-method_chain330] [gw12] [ 66%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain331-method_chain331] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain332-method_chain332] [gw13] [ 66%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain328-method_chain328] [gw10] [ 66%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain316-method_chain316] [gw14] [ 67%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain320-method_chain320] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain345-method_chain345] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain341-method_chain341] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain337-method_chain337] [gw18] [ 67%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain322-method_chain322] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain339-method_chain339] [gw19] [ 67%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain318-method_chain318] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain343-method_chain343] [gw16] [ 67%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain326-method_chain326] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain347-method_chain347] [gw15] [ 67%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain333-method_chain333] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain334-method_chain334] [gw18] [ 67%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain339-method_chain339] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain340-method_chain340] [gw17] [ 68%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain335-method_chain335] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain336-method_chain336] [gw14] [ 68%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain337-method_chain337] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain338-method_chain338] [gw11] [ 68%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain330-method_chain330] [gw13] [ 68%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain345-method_chain345] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain346-method_chain346] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain348-method_chain348] [gw12] [ 68%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain332-method_chain332] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain349-method_chain349] [gw10] [ 69%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain341-method_chain341] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain342-method_chain342] [gw16] [ 69%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain347-method_chain347] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain350-method_chain350] [gw19] [ 69%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain343-method_chain343] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain344-method_chain344] [gw18] [ 69%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain340-method_chain340] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain352-method_chain352] [gw14] [ 69%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain338-method_chain338] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain354-method_chain354] [gw15] [ 70%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain334-method_chain334] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain351-method_chain351] [gw17] [ 70%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain336-method_chain336] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain353-method_chain353] [gw10] [ 70%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain342-method_chain342] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain358-method_chain358] [gw13] [ 70%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain346-method_chain346] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain355-method_chain355] [gw12] [ 70%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain349-method_chain349] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain357-method_chain357] [gw11] [ 70%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain348-method_chain348] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain356-method_chain356] [gw18] [ 71%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain352-method_chain352] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain361-method_chain361] [gw16] [ 71%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain350-method_chain350] [gw19] [ 71%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain344-method_chain344] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain360-method_chain360] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain359-method_chain359] [gw15] [ 71%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain351-method_chain351] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain363-method_chain363] [gw17] [ 71%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain353-method_chain353] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain364-method_chain364] [gw14] [ 72%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain354-method_chain354] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain362-method_chain362] [gw10] [ 72%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain358-method_chain358] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain365-method_chain365] [gw12] [ 72%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain357-method_chain357] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain367-method_chain367] [gw18] [ 72%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain361-method_chain361] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain369-method_chain369] [gw11] [ 72%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain356-method_chain356] [gw16] [ 73%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain359-method_chain359] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain368-method_chain368] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain371-method_chain371] [gw19] [ 73%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain360-method_chain360] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain370-method_chain370] [gw15] [ 73%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain363-method_chain363] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain372-method_chain372] [gw13] [ 73%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain355-method_chain355] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain366-method_chain366] [gw14] [ 73%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain362-method_chain362] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain374-method_chain374] [gw17] [ 74%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain364-method_chain364] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain373-method_chain373] [gw10] [ 74%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain365-method_chain365] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain375-method_chain375] [gw12] [ 74%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain367-method_chain367] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain376-method_chain376] [gw11] [ 74%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain368-method_chain368] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain378-method_chain378] [gw18] [ 74%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain369-method_chain369] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain377-method_chain377] [gw15] [ 74%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain372-method_chain372] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain381-method_chain381] [gw19] [ 75%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain370-method_chain370] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain380-method_chain380] [gw13] [ 75%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain366-method_chain366] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain382-method_chain382] [gw14] [ 75%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain374-method_chain374] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain383-method_chain383] [gw16] [ 75%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain371-method_chain371] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain379-method_chain379] [gw17] [ 75%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain373-method_chain373] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain384-method_chain384] [gw10] [ 76%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain375-method_chain375] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain385-method_chain385] [gw6] [ 76%] PASSED tests/test_binary.py::test_nearest[upstream-False-False] tests/test_binary.py::test_nearest[upstream-False-same] [gw12] [ 76%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain376-method_chain376] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain386-method_chain386] [gw18] [ 76%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain377-method_chain377] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain388-method_chain388] [gw5] [ 76%] PASSED tests/test_binary.py::test_join[opposite] [gw11] [ 77%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain378-method_chain378] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain387-method_chain387] tests/test_binary.py::test_reldist [gw15] [ 77%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain381-method_chain381] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain389-method_chain389] [gw13] [ 77%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain382-method_chain382] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain391-method_chain391] [gw19] [ 77%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain380-method_chain380] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain390-method_chain390] [gw10] [ 77%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain385-method_chain385] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain395-method_chain395] [gw17] [ 77%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain384-method_chain384] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain394-method_chain394] [gw12] [ 78%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain386-method_chain386] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain396-method_chain396] [gw16] [ 78%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain379-method_chain379] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain393-method_chain393] [gw7] [ 78%] PASSED tests/test_binary.py::test_nearest[downstream-False-False] tests/test_binary.py::test_nearest[downstream-False-same] [gw18] [ 78%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain388-method_chain388] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain397-method_chain397] [gw14] [ 78%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain383-method_chain383] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain392-method_chain392] [gw11] [ 79%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain387-method_chain387] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain398-method_chain398] [gw15] [ 79%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain389-method_chain389] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain399-method_chain399] [gw13] [ 79%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain391-method_chain391] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain400-method_chain400] [gw2] [ 79%] PASSED tests/test_binary.py::test_nearest[None-False-False] [gw19] [ 79%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain390-method_chain390] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain401-method_chain401] tests/test_binary.py::test_nearest[None-False-same] [gw17] [ 80%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain394-method_chain394] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain403-method_chain403] [gw12] [ 80%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain396-method_chain396] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain404-method_chain404] [gw10] [ 80%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain395-method_chain395] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain402-method_chain402] [gw16] [ 80%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain393-method_chain393] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain405-method_chain405] [gw13] [ 80%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain400-method_chain400] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain410-method_chain410] [gw15] [ 80%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain399-method_chain399] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain409-method_chain409] [gw19] [ 81%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain401-method_chain401] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain411-method_chain411] [gw11] [ 81%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain398-method_chain398] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain408-method_chain408] [gw14] [ 81%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain392-method_chain392] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain407-method_chain407] [gw18] [ 81%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain397-method_chain397] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain406-method_chain406] [gw17] [ 81%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain403-method_chain403] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain412-method_chain412] [gw12] [ 82%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain404-method_chain404] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain413-method_chain413] [gw1] [ 82%] PASSED tests/test_binary.py::test_intersect[same] tests/test_binary.py::test_intersect[opposite] [gw10] [ 82%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain402-method_chain402] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain414-method_chain414] [gw16] [ 82%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain405-method_chain405] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain415-method_chain415] [gw13] [ 82%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain410-method_chain410] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain416-method_chain416] [gw15] [ 83%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain409-method_chain409] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain417-method_chain417] [gw19] [ 83%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain411-method_chain411] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain418-method_chain418] [gw11] [ 83%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain408-method_chain408] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain419-method_chain419] [gw14] [ 83%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain407-method_chain407] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain420-method_chain420] [gw17] [ 83%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain412-method_chain412] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain422-method_chain422] [gw18] [ 83%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain406-method_chain406] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain421-method_chain421] [gw12] [ 84%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain413-method_chain413] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain423-method_chain423] [gw16] [ 84%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain415-method_chain415] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain425-method_chain425] [gw10] [ 84%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain414-method_chain414] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain424-method_chain424] [gw15] [ 84%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain417-method_chain417] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain427-method_chain427] [gw13] [ 84%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain416-method_chain416] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain426-method_chain426] [gw11] [ 85%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain419-method_chain419] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain429-method_chain429] [gw19] [ 85%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain418-method_chain418] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain428-method_chain428] [gw17] [ 85%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain422-method_chain422] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain431-method_chain431] [gw14] [ 85%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain420-method_chain420] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain430-method_chain430] [gw12] [ 85%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain423-method_chain423] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain433-method_chain433] [gw18] [ 86%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain421-method_chain421] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain432-method_chain432] [gw10] [ 86%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain424-method_chain424] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain435-method_chain435] [gw16] [ 86%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain425-method_chain425] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain434-method_chain434] [gw13] [ 86%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain426-method_chain426] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain437-method_chain437] [gw0] [ 86%] PASSED tests/test_binary.py::test_set_union[False] tests/test_binary.py::test_set_union[same] [gw11] [ 87%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain429-method_chain429] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain438-method_chain438] [gw17] [ 87%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain431-method_chain431] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain440-method_chain440] [gw15] [ 87%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain427-method_chain427] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain436-method_chain436] [gw19] [ 87%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain428-method_chain428] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain439-method_chain439] [gw14] [ 87%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain430-method_chain430] tests/test_genomicfeatures.py::test_introns_single [gw12] [ 87%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain433-method_chain433] tests/test_getset_attr.py::test_getsetattr [gw12] [ 88%] PASSED tests/test_getset_attr.py::test_getsetattr tests/test_unary.py::test_merge[False] [gw10] [ 88%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain435-method_chain435] tests/test_getset_attr.py::test_getsetattr_with_str [gw10] [ 88%] PASSED tests/test_getset_attr.py::test_getsetattr_with_str tests/test_unary.py::test_cluster[False] [gw13] [ 88%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain437-method_chain437] tests/test_io.py::test_read_gff3 [gw13] [ 88%] PASSED tests/test_io.py::test_read_gff3 tests/test_unary.py::test_cluster_by[False] [gw4] [ 89%] PASSED tests/test_binary.py::test_k_nearest[downstream-True-opposite-last] tests/test_binary.py::test_k_nearest[downstream-True-same-last] [gw9] [ 89%] PASSED tests/test_binary.py::test_k_nearest[upstream-True-opposite-last] [gw16] [ 89%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain434-method_chain434] tests/test_binary.py::test_k_nearest[upstream-True-same-last] tests/test_io.py::test_read_gtf [gw16] [ 89%] PASSED tests/test_io.py::test_read_gtf tests/test_unary.py::test_merge_by[False] [gw11] [ 89%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain438-method_chain438] tests/test_io.py::test_read_bed [gw11] [ 90%] PASSED tests/test_io.py::test_read_bed tests/test_unary.py::test_init[True] [gw17] [ 90%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain440-method_chain440] [gw18] [ 90%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain432-method_chain432] tests/test_pickle.py::test_pickle tests/test_getset_attr.py::test_getsetattr_fails [gw17] [ 90%] PASSED tests/test_pickle.py::test_pickle tests/test_unary.py::test_getitem [gw18] [ 90%] PASSED tests/test_getset_attr.py::test_getsetattr_fails tests/test_unary.py::test_summary [gw15] [ 90%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain436-method_chain436] tests/test_stranded.py::test_stranded [gw15] [ 91%] PASSED tests/test_stranded.py::test_stranded [gw14] [ 91%] PASSED tests/test_genomicfeatures.py::test_introns_single tests/test_unary.py::test_merge[True] [gw19] [ 91%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain439-method_chain439] tests/test_stranded.py::test_unstrand [gw19] [ 91%] PASSED tests/test_stranded.py::test_unstrand [gw11] [ 91%] PASSED tests/test_unary.py::test_init[True] tests/test_unary.py::test_init[False] [gw8] [ 92%] PASSED tests/test_binary.py::test_k_nearest[None-True-opposite-last] tests/test_binary.py::test_k_nearest[None-True-same-last] [gw3] [ 92%] PASSED tests/test_binary.py::test_subtraction[same] [gw5] [ 92%] PASSED tests/test_binary.py::test_reldist tests/test_binary.py::test_k_nearest[downstream-False-opposite-last] tests/test_binary.py::test_subtraction[opposite] [gw11] [ 92%] PASSED tests/test_unary.py::test_init[False] [gw17] [ 92%] PASSED tests/test_unary.py::test_getitem tests/windows/test_windows.py::test_windows [gw17] [ 93%] PASSED tests/windows/test_windows.py::test_windows [gw6] [ 93%] PASSED tests/test_binary.py::test_nearest[upstream-False-same] tests/test_binary.py::test_nearest[upstream-False-opposite] [gw7] [ 93%] PASSED tests/test_binary.py::test_nearest[downstream-False-same] tests/test_binary.py::test_nearest[downstream-False-opposite] [gw1] [ 93%] PASSED tests/test_binary.py::test_intersect[opposite] tests/test_binary.py::test_coverage[False] [gw2] [ 93%] PASSED tests/test_binary.py::test_nearest[None-False-same] tests/test_binary.py::test_nearest[None-False-opposite] [gw18] [ 93%] PASSED tests/test_unary.py::test_summary tests/windows/test_windows.py::test_windows2 [gw18] [ 94%] PASSED tests/windows/test_windows.py::test_windows2 [gw12] [ 94%] PASSED tests/test_unary.py::test_merge[False] tests/test_unary.py::test_cluster[True] [gw16] [ 94%] PASSED tests/test_unary.py::test_merge_by[False] tests/test_unary.py::test_windows [gw14] [ 94%] PASSED tests/test_unary.py::test_merge[True] [gw0] [ 94%] PASSED tests/test_binary.py::test_set_union[same] tests/test_binary.py::test_overlap[False] [gw10] [ 95%] PASSED tests/test_unary.py::test_cluster[False] tests/test_unary.py::test_cluster_by[True] [gw4] [ 95%] PASSED tests/test_binary.py::test_k_nearest[downstream-True-same-last] tests/test_binary.py::test_k_nearest[downstream-True-False-last] [gw6] [ 95%] PASSED tests/test_binary.py::test_nearest[upstream-False-opposite] tests/test_binary.py::test_nearest[downstream-True-False] [gw7] [ 95%] PASSED tests/test_binary.py::test_nearest[downstream-False-opposite] tests/test_binary.py::test_jaccard[False] [gw5] [ 95%] PASSED tests/test_binary.py::test_k_nearest[downstream-False-opposite-last] [gw9] [ 96%] PASSED tests/test_binary.py::test_k_nearest[upstream-True-same-last] tests/test_binary.py::test_k_nearest[upstream-True-False-last] [gw2] [ 96%] PASSED tests/test_binary.py::test_nearest[None-False-opposite] tests/test_binary.py::test_nearest[upstream-True-False] [gw3] [ 96%] PASSED tests/test_binary.py::test_subtraction[opposite] tests/test_binary.py::test_subtraction[False] [gw8] [ 96%] PASSED tests/test_binary.py::test_k_nearest[None-True-same-last] tests/test_binary.py::test_k_nearest[None-True-False-last] [gw13] [ 96%] PASSED tests/test_unary.py::test_cluster_by[False] tests/test_unary.py::test_merge_by[True] [gw0] [ 96%] PASSED tests/test_binary.py::test_overlap[False] [gw1] [ 97%] PASSED tests/test_binary.py::test_coverage[False] [gw16] [ 97%] PASSED tests/test_unary.py::test_windows [gw12] [ 97%] PASSED tests/test_unary.py::test_cluster[True] [gw7] [ 97%] PASSED tests/test_binary.py::test_jaccard[False] [gw6] [ 97%] PASSED tests/test_binary.py::test_nearest[downstream-True-False] [gw10] [ 98%] PASSED tests/test_unary.py::test_cluster_by[True] [gw2] [ 98%] PASSED tests/test_binary.py::test_nearest[upstream-True-False] [gw13] [ 98%] PASSED tests/test_unary.py::test_merge_by[True] [gw4] [ 98%] PASSED tests/test_binary.py::test_k_nearest[downstream-True-False-last] tests/test_binary.py::test_k_nearest[upstream-False-opposite-last] [gw3] [ 98%] PASSED tests/test_binary.py::test_subtraction[False] tests/test_binary.py::test_nearest[None-True-False] [gw9] [ 99%] PASSED tests/test_binary.py::test_k_nearest[upstream-True-False-last] tests/test_binary.py::test_k_nearest[None-False-opposite-last] [gw8] [ 99%] PASSED tests/test_binary.py::test_k_nearest[None-True-False-last] tests/test_binary.py::test_k_nearest_1_vs_nearest [gw4] [ 99%] PASSED tests/test_binary.py::test_k_nearest[upstream-False-opposite-last] [gw3] [ 99%] PASSED tests/test_binary.py::test_nearest[None-True-False] [gw9] [ 99%] PASSED tests/test_binary.py::test_k_nearest[None-False-opposite-last] [gw8] [100%] PASSED tests/test_binary.py::test_k_nearest_1_vs_nearest =============================== warnings summary =============================== tests/conftest.py:83 /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/conftest.py:83: SyntaxWarning: invalid escape sequence '\s' sep="\s+", pyranges/__init__.py:18: 21 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/__init__.py:18: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html import pkg_resources tests/test_binary.py:118: 20 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_binary.py:118: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) tests/test_binary.py:139: 20 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_binary.py:139: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) tests/test_binary.py:160: 20 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_binary.py:160: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) tests/test_binary.py:187: 20 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_binary.py:187: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) tests/test_binary.py:212: 20 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_binary.py:212: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) tests/test_binary.py:291: 20 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_binary.py:291: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) tests/test_binary.py:329: 20 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_binary.py:329: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) tests/test_binary.py:368: 20 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_binary.py:368: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) tests/test_binary.py:392: 20 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_binary.py:392: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) tests/test_binary.py:426: 20 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_binary.py:426: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) tests/test_binary.py:516: 20 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_binary.py:516: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) tests/test_binary.py:579: 20 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_binary.py:579: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) pyranges/methods/init.py:60: 100 warnings .pybuild/cpython3_3.12_pyranges/build/tests/test_change_chromosome_custom.py: 2 warnings .pybuild/cpython3_3.12_pyranges/build/tests/test_concat.py: 8 warnings .pybuild/cpython3_3.12_pyranges/build/tests/data/test_data.py: 9 warnings .pybuild/cpython3_3.12_pyranges/build/tests/test_count_overlaps.py: 1 warning .pybuild/cpython3_3.12_pyranges/build/tests/test_do_not_error.py: 160479 warnings .pybuild/cpython3_3.12_pyranges/build/tests/test_binary.py: 158809 warnings .pybuild/cpython3_3.12_pyranges/build/tests/test_getset_attr.py: 3 warnings .pybuild/cpython3_3.12_pyranges/build/tests/test_io.py: 4 warnings .pybuild/cpython3_3.12_pyranges/build/tests/test_pickle.py: 1 warning .pybuild/cpython3_3.12_pyranges/build/tests/test_stranded.py: 6 warnings .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py: 358 warnings .pybuild/cpython3_3.12_pyranges/build/tests/test_unary.py: 23739 warnings .pybuild/cpython3_3.12_pyranges/build/tests/windows/test_windows.py: 2 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/methods/init.py:60: FutureWarning: The default of observed=False is deprecated and will be changed to True in a future version of pandas. Pass observed=False to retain current behavior or observed=True to adopt the future default and silence this warning. return {k: v for k, v in df.groupby(grpby_key)} pyranges/methods/init.py:189: 80 warnings .pybuild/cpython3_3.12_pyranges/build/tests/test_change_chromosome_custom.py: 1 warning .pybuild/cpython3_3.12_pyranges/build/tests/test_concat.py: 7 warnings .pybuild/cpython3_3.12_pyranges/build/tests/test_do_not_error.py: 4387 warnings .pybuild/cpython3_3.12_pyranges/build/tests/test_binary.py: 2000 warnings .pybuild/cpython3_3.12_pyranges/build/tests/test_stranded.py: 2 warnings .pybuild/cpython3_3.12_pyranges/build/tests/test_unary.py: 6249 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/methods/init.py:189: FutureWarning: The default of observed=False is deprecated and will be changed to True in a future version of pandas. Pass observed=False to retain current behavior or observed=True to adopt the future default and silence this warning. empty_removed = df.groupby("Chromosome") tests/test_do_not_error.py:46: 20 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_do_not_error.py:46: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) tests/test_unary.py:35: 20 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_unary.py:35: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) tests/test_unary.py:100: 20 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_unary.py:100: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) tests/test_unary.py:163: 20 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_unary.py:163: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) tests/test_unary.py:205: 20 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_unary.py:205: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) tests/test_unary.py:234: 20 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_unary.py:234: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) tests/test_unary.py:272: 20 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_unary.py:272: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) tests/test_unary.py:287: 20 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_unary.py:287: HypothesisDeprecationWarning: The return_value health check is deprecated, because this is always an error. @settings( tests/test_unary.py:315: 20 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_unary.py:315: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) .pybuild/cpython3_3.12_pyranges/build/tests/test_concat.py::test_concat_stranded_unstranded /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/methods/concat.py:47: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['+', '+', '-', NaN, NaN] Categories (3, object): ['+', '-', '.']' has dtype incompatible with category, please explicitly cast to a compatible dtype first. v.loc[:, "Strand"] = type_v.cat.add_categories(["."]) .pybuild/cpython3_3.12_pyranges/build/tests/test_concat.py: 1 warning .pybuild/cpython3_3.12_pyranges/build/tests/test_do_not_error.py: 3027 warnings .pybuild/cpython3_3.12_pyranges/build/tests/test_stranded.py: 2 warnings .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py: 119 warnings .pybuild/cpython3_3.12_pyranges/build/tests/test_unary.py: 5249 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/methods/init.py:187: FutureWarning: The default of observed=False is deprecated and will be changed to True in a future version of pandas. Pass observed=False to retain current behavior or observed=True to adopt the future default and silence this warning. empty_removed = df.groupby(["Chromosome", "Strand"]) .pybuild/cpython3_3.12_pyranges/build/tests/test_concat.py::test_concat_unstranded_stranded /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/methods/concat.py:47: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[NaN, NaN, NaN, '+', '-'] Categories (3, object): ['+', '-', '.']' has dtype incompatible with category, please explicitly cast to a compatible dtype first. v.loc[:, "Strand"] = type_v.cat.add_categories(["."]) .pybuild/cpython3_3.12_pyranges/build/tests/test_do_not_error.py: 8138 warnings .pybuild/cpython3_3.12_pyranges/build/tests/test_binary.py: 14659 warnings .pybuild/cpython3_3.12_pyranges/build/tests/test_unary.py: 16076 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/tostring2.py:31: FutureWarning: The behavior of DataFrame concatenation with empty or all-NA entries is deprecated. In a future version, this will no longer exclude empty or all-NA columns when determining the result dtypes. To retain the old behavior, exclude the relevant entries before the concat operation. df = pd.concat([plus, minus]) .pybuild/cpython3_3.12_pyranges/build/tests/test_do_not_error.py: 1408 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/pyranges.py:3779: FutureWarning: The behavior of Series.replace (and DataFrame.replace) with CategoricalDtype is deprecated. In a future version, replace will only be used for cases that preserve the categories. To change the categories, use ser.cat.rename_categories instead. other.Strand = other.Strand.replace({"+": "-", "-": "+"}) .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1217804. 1221351. 1223357. 1223968. 1227319. 1228946. 1232031.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000078808.16' 'ENSG00000078808.16' 'ENSG00000078808.16' 'ENSG00000078808.16' 'ENSG00000078808.16' 'ENSG00000078808.16']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1336515. 1337055. 1338183. 1338436. 1338653. 1339812. 1340190. 1340365. 1340503. 1342156. 1342484. 1342758. 1349350.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000107404.19' 'ENSG00000107404.19' 'ENSG00000107404.19' 'ENSG00000107404.19' 'ENSG00000107404.19' 'ENSG00000107404.19' 'ENSG00000107404.19' 'ENSG00000107404.19' 'ENSG00000107404.19' 'ENSG00000107404.19' 'ENSG00000107404.19' 'ENSG00000107404.19']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1311924. 1312147. 1313592. 1315697. 1317450. 1321096. 1321984. 1323287. 1324691.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000127054.20' 'ENSG00000127054.20' 'ENSG00000127054.20' 'ENSG00000127054.20' 'ENSG00000127054.20' 'ENSG00000127054.20' 'ENSG00000127054.20' 'ENSG00000127054.20']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1293708. 1293933. 1294199. 1294628. 1295008. 1295554. 1295938. 1296109. 1296280. 1296633. 1297933. 1298265. 1298421. 1299905. 1300068. 1300202. 1300692. 1302046. 1302975. 1305929. 1307156. 1307383. 1308018. 1309609.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18' 'ENSG00000131584.18']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1084506. 1085310. 1086012. 1087636. 1092294. 1092813. 1106127. 1106871. 1115075. 1116361.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000131591.17' 'ENSG00000131591.17' 'ENSG00000131591.17' 'ENSG00000131591.17' 'ENSG00000131591.17' 'ENSG00000131591.17' 'ENSG00000131591.17' 'ENSG00000131591.17' 'ENSG00000131591.17']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1472089. 1477350. 1478745. 1479108. 1480936. 1482303. 1482662. 1485171. 1486235. 1486668. 1487914. 1490671. 1497848.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000160072.19' 'ENSG00000160072.19' 'ENSG00000160072.19' 'ENSG00000160072.19' 'ENSG00000160072.19' 'ENSG00000160072.19' 'ENSG00000160072.19' 'ENSG00000160072.19' 'ENSG00000160072.19' 'ENSG00000160072.19' 'ENSG00000160072.19' 'ENSG00000160072.19']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1255487. 1256335. 1257130. 1257310. 1262390. 1263569. 1264830. 1266290. 1267992. 1271637. 1273885.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000160087.20' 'ENSG00000160087.20' 'ENSG00000160087.20' 'ENSG00000160087.20' 'ENSG00000160087.20' 'ENSG00000160087.20' 'ENSG00000160087.20' 'ENSG00000160087.20' 'ENSG00000160087.20' 'ENSG00000160087.20']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1173926. 1174321. 1174489. 1175034. 1179333. 1179853. 1180340. 1180884. 1181815. 1182446. 1183047. 1184091. 1185864. 1196488. 1196716. 1197186. 1197935.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000162571.13' 'ENSG00000162571.13' 'ENSG00000162571.13' 'ENSG00000162571.13' 'ENSG00000162571.13' 'ENSG00000162571.13' 'ENSG00000162571.13' 'ENSG00000162571.13' 'ENSG00000162571.13' 'ENSG00000162571.13' 'ENSG00000162571.13' 'ENSG00000162571.13' 'ENSG00000162571.13' 'ENSG00000162571.13' 'ENSG00000162571.13' 'ENSG00000162571.13']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1281610. 1282010. 1282319. 1284090. 1285664. 1286278. 1286975. 1287299. 1287836. 1288037. 1290388. 1290555. 1290694. 1290953. 1291140. 1292029.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000162572.20' 'ENSG00000162572.20' 'ENSG00000162572.20' 'ENSG00000162572.20' 'ENSG00000162572.20' 'ENSG00000162572.20' 'ENSG00000162572.20' 'ENSG00000162572.20' 'ENSG00000162572.20' 'ENSG00000162572.20' 'ENSG00000162572.20' 'ENSG00000162572.20' 'ENSG00000162572.20' 'ENSG00000162572.20' 'ENSG00000162572.20']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1353946. 1354106. 1354509. 1355752. 1356704. 1358794. 1361777.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000162576.16' 'ENSG00000162576.16' 'ENSG00000162576.16' 'ENSG00000162576.16' 'ENSG00000162576.16' 'ENSG00000162576.16']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1331536. 1331938. 1332806. 1333124. 1333379. 1335306.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000169962.4' 'ENSG00000169962.4' 'ENSG00000169962.4' 'ENSG00000169962.4' 'ENSG00000169962.4']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1308720. 1308972. 1309851. 1311071. 1311677.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000169972.11' 'ENSG00000169972.11' 'ENSG00000169972.11' 'ENSG00000169972.11']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1373902. 1375495.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000175756.13']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1235041.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 818202. 819837.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000177757.2']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1435146. 1435821. 1437484. 1442882.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000179403.11' 'ENSG00000179403.11' 'ENSG00000179403.11']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1242646. 1243552. 1244275. 1244724. 1246722.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000184163.3' 'ENSG00000184163.3' 'ENSG00000184163.3' 'ENSG00000184163.3']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 65433. 65573. 71585.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000186092.6' 'ENSG00000186092.6']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1211832. 1212138. 1212704. 1213785. 1214138.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000186827.10' 'ENSG00000186827.10' 'ENSG00000186827.10' 'ENSG00000186827.10']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1203968. 1204236. 1204486. 1205680. 1206691.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000186891.13' 'ENSG00000186891.13' 'ENSG00000186891.13' 'ENSG00000186891.13']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 966614. 966803. 970423. 970601. 971006. 971208. 971523. 972150. 972424. 973010. 973326. 973640. 974051. 974364. 975108. 975865.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000187583.10' 'ENSG00000187583.10' 'ENSG00000187583.10' 'ENSG00000187583.10' 'ENSG00000187583.10' 'ENSG00000187583.10' 'ENSG00000187583.10' 'ENSG00000187583.10' 'ENSG00000187583.10' 'ENSG00000187583.10' 'ENSG00000187583.10' 'ENSG00000187583.10' 'ENSG00000187583.10' 'ENSG00000187583.10' 'ENSG00000187583.10']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1001281. 1008279. 1013576. 1014540.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000187608.9' 'ENSG00000187608.9' 'ENSG00000187608.9']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 924948. 925189. 925800. 926013. 930336. 931089. 935896. 939129. 939460. 940462. 941306. 943058. 943377. 944581.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000187634.11' 'ENSG00000187634.11' 'ENSG00000187634.11' 'ENSG00000187634.11' 'ENSG00000187634.11' 'ENSG00000187634.11' 'ENSG00000187634.11' 'ENSG00000187634.11' 'ENSG00000187634.11' 'ENSG00000187634.11' 'ENSG00000187634.11' 'ENSG00000187634.11' 'ENSG00000187634.11']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 976269. 976641. 981029. 981173. 982093.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000187642.9' 'ENSG00000187642.9' 'ENSG00000187642.9' 'ENSG00000187642.9']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 960800. 961750. 962478. 962917. 963253. 963504. 964008. 964180. 964530. 965715.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000187961.13' 'ENSG00000187961.13' 'ENSG00000187961.13' 'ENSG00000187961.13' 'ENSG00000187961.13' 'ENSG00000187961.13' 'ENSG00000187961.13' 'ENSG00000187961.13' 'ENSG00000187961.13']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1020373. 1022462. 1034703. 1035324. 1040880. 1041397. 1041702. 1042162. 1043457. 1043732. 1044023. 1044257. 1044439. 1045277. 1045523. 1045876. 1046088. 1046349. 1046735. 1046957. 1047454. 1047687. 1047895. 1048365. 1049059. 1049451. 1049795. 1050037. 1050329. 1050591. 1050837. 1051043. 1051369. 1051645. 1051815. 1053977. 1054551. 1056118.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14' 'ENSG00000188157.14']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 999432. 1000172.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000188290.10']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 944800. 945146. 945422. 945653. 946286. 947060. 948232. 948603. 951238. 952139. 952600. 953288. 953892. 954523. 956013. 956215. 957025. 959081. 959309.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000188976.10' 'ENSG00000188976.10' 'ENSG00000188976.10' 'ENSG00000188976.10' 'ENSG00000188976.10' 'ENSG00000188976.10' 'ENSG00000188976.10' 'ENSG00000188976.10' 'ENSG00000188976.10' 'ENSG00000188976.10' 'ENSG00000188976.10' 'ENSG00000188976.10' 'ENSG00000188976.10' 'ENSG00000188976.10' 'ENSG00000188976.10' 'ENSG00000188976.10' 'ENSG00000188976.10' 'ENSG00000188976.10']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1512473. 1516088. 1517412. 1517775. 1518990. 1520306. 1520617.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000197785.13' 'ENSG00000197785.13' 'ENSG00000197785.13' 'ENSG00000197785.13' 'ENSG00000197785.13' 'ENSG00000197785.13' 'ENSG00000197785.13']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 634922.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1169087.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1426385. 1427787.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000205116.3']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1176396. 1179555.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000205231.1']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1167952.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1167198.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1450758. 1452122. 1452434. 1454500. 1455519. 1455916. 1456349. 1457180. 1459231. 1460917. 1462708. 1470158.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000215915.9' 'ENSG00000215915.9' 'ENSG00000215915.9' 'ENSG00000215915.9' 'ENSG00000215915.9' 'ENSG00000215915.9' 'ENSG00000215915.9' 'ENSG00000215915.9' 'ENSG00000215915.9' 'ENSG00000215915.9' 'ENSG00000215915.9']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1059846. 1060393. 1061117. 1063201. 1063566. 1064401. 1064589. 1065475. 1066456. 1066667. 1067646. 1068003. 1068724. 1069355.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000217801.9' 'ENSG00000217801.9' 'ENSG00000217801.9' 'ENSG00000217801.9' 'ENSG00000217801.9' 'ENSG00000217801.9' 'ENSG00000217801.9' 'ENSG00000217801.9' 'ENSG00000217801.9' 'ENSG00000217801.9' 'ENSG00000217801.9' 'ENSG00000217801.9' 'ENSG00000217801.9']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1387582. 1387869. 1388743. 1388830. 1389047. 1389473. 1390371. 1390563. 1392803. 1393460. 1395537. 1398366. 1398956. 1399328.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000221978.11' 'ENSG00000221978.11' 'ENSG00000221978.11' 'ENSG00000221978.11' 'ENSG00000221978.11' 'ENSG00000221978.11' 'ENSG00000221978.11' 'ENSG00000221978.11' 'ENSG00000221978.11' 'ENSG00000221978.11' 'ENSG00000221978.11' 'ENSG00000221978.11' 'ENSG00000221978.11']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 157887.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 758336.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1379032.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 921016.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1137110. 1141032. 1144056.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000223823.1' 'ENSG00000223823.1']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 12227. 12721. 13052. 14409.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000223972.5' 'ENSG00000223972.5' 'ENSG00000223972.5']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1325102. 1325595. 1327032. 1328897.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000224051.6' 'ENSG00000224051.6' 'ENSG00000224051.6']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1402046.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1012190. 1013193.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000224969.1']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1430954. 1431843. 1434573.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000225285.1' 'ENSG00000225285.1']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 630683.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 827522.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1420564. 1422691.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000225905.1']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 629433.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 14501. 15038. 15947. 16765. 17055. 17368. 17742. 18061. 18366. 24891. 29570.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000227232.5' 'ENSG00000227232.5' 'ENSG00000227232.5' 'ENSG00000227232.5' 'ENSG00000227232.5' 'ENSG00000227232.5' 'ENSG00000227232.5' 'ENSG00000227232.5' 'ENSG00000227232.5' 'ENSG00000227232.5']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 729804. 733364. 735613. 743350. 744391. 744825. 746818. 756141. 759123. 765247. 766387. 768613. 769712. 773107. 774280. 778626.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000228327.3' 'ENSG00000228327.3' 'ENSG00000228327.3' 'ENSG00000228327.3' 'ENSG00000228327.3' 'ENSG00000228327.3' 'ENSG00000228327.3' 'ENSG00000228327.3' 'ENSG00000228327.3' 'ENSG00000228327.3' 'ENSG00000228327.3' 'ENSG00000228327.3' 'ENSG00000228327.3' 'ENSG00000228327.3' 'ENSG00000228327.3']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 259025. 261634. 268204. 268816. 289370. 297502. 357586. 358183. 359681.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000228463.10' 'ENSG00000228463.10' 'ENSG00000228463.10' 'ENSG00000228463.10' 'ENSG00000228463.10' 'ENSG00000228463.10' 'ENSG00000228463.10' 'ENSG00000228463.10']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 825552. 826923. 827775. 827853. 829104. 831677. 842020. 847806. 849602. 850351. 852515. 852766. 859446.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000228794.8' 'ENSG00000228794.8' 'ENSG00000228794.8' 'ENSG00000228794.8' 'ENSG00000228794.8' 'ENSG00000228794.8' 'ENSG00000228794.8' 'ENSG00000228794.8' 'ENSG00000228794.8' 'ENSG00000228794.8' 'ENSG00000228794.8' 'ENSG00000228794.8']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 633438.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 724360. 724903.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000229376.3']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 761154. 761989.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000229905.1']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 586358. 586955. 588453. 594756. 598551. 601577. 608056. 612864. 627823. 628223. 629006. 631204. 633129. 698959. 702340. 703789. 711922. 720206. 724564. 732212. 733064. 827796.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000230021.10' 'ENSG00000230021.10' 'ENSG00000230021.10' 'ENSG00000230021.10' 'ENSG00000230021.10' 'ENSG00000230021.10' 'ENSG00000230021.10' 'ENSG00000230021.10' 'ENSG00000230021.10' 'ENSG00000230021.10' 'ENSG00000230021.10' 'ENSG00000230021.10' 'ENSG00000230021.10' 'ENSG00000230021.10' 'ENSG00000230021.10' 'ENSG00000230021.10' 'ENSG00000230021.10' 'ENSG00000230021.10' 'ENSG00000230021.10' 'ENSG00000230021.10' 'ENSG00000230021.10']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 801163. 805891. 808623. 810170. 817712.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000230092.7' 'ENSG00000230092.7' 'ENSG00000230092.7' 'ENSG00000230092.7']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 868675. 869575. 870201. 875155. 876903.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000230368.2' 'ENSG00000230368.2' 'ENSG00000230368.2' 'ENSG00000230368.2']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1275299. 1279393. 1280420.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000230415.1' 'ENSG00000230415.1']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 911473. 914948.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000230699.2']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1008229.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 489387. 489906.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000233653.3']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 134836.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 874349.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1419549. 1420592. 1421769.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000235098.8' 'ENSG00000235098.8']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 587729. 594768.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000235146.2']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 358957. 360168. 366052.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000236601.2' 'ENSG00000236601.2']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 348366.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 365692. 366151. 368450. 373323. 379972. 476945. 485208. 489553. 494898. 495049. 495476. 496605. 497299. 498305. 499369. 501620. 502243. 502955. 505103. 514423. 517266. 522928.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000237094.12' 'ENSG00000237094.12' 'ENSG00000237094.12' 'ENSG00000237094.12' 'ENSG00000237094.12' 'ENSG00000237094.12' 'ENSG00000237094.12' 'ENSG00000237094.12' 'ENSG00000237094.12' 'ENSG00000237094.12' 'ENSG00000237094.12' 'ENSG00000237094.12' 'ENSG00000237094.12' 'ENSG00000237094.12' 'ENSG00000237094.12' 'ENSG00000237094.12' 'ENSG00000237094.12' 'ENSG00000237094.12' 'ENSG00000237094.12' 'ENSG00000237094.12' 'ENSG00000237094.12']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1072575. 1074307.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000237330.2']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 779092. 782191. 783363. 784977. 787672. 793041. 795582. 801876. 803667. 804222. 805270. 806459. 807465. 810060.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000237491.8' 'ENSG00000237491.8' 'ENSG00000237491.8' 'ENSG00000237491.8' 'ENSG00000237491.8' 'ENSG00000237491.8' 'ENSG00000237491.8' 'ENSG00000237491.8' 'ENSG00000237491.8' 'ENSG00000237491.8' 'ENSG00000237491.8' 'ENSG00000237491.8' 'ENSG00000237491.8']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 35174. 35481. 36081.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000237613.2' 'ENSG00000237613.2']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 632616.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 91629. 92240. 111357. 112804. 120932. 129223. 133723.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000238009.6' 'ENSG00000238009.6' 'ENSG00000238009.6' 'ENSG00000238009.6' 'ENSG00000238009.6' 'ENSG00000238009.6']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 139847. 140339.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000239906.1']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 90050. 91105.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000239945.1']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 57653. 58856. 64116.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000240361.2' 'ENSG00000240361.2']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 633741.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1317899. 1318689.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000240731.1']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 914444. 914971.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000241180.1']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 160690. 161525.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000241599.1']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 143011. 149707. 155831. 164791. 165942. 168165. 168767. 169264. 172688. 173862.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000241860.6' 'ENSG00000241860.6' 'ENSG00000241860.6' 'ENSG00000241860.6' 'ENSG00000241860.6' 'ENSG00000241860.6' 'ENSG00000241860.6' 'ENSG00000241860.6' 'ENSG00000241860.6']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1402601. 1407019. 1407313.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000242485.5' 'ENSG00000242485.5']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1055215. 1056116.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000242590.1']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 30039. 30667. 31109.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000243485.5' 'ENSG00000243485.5']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 634376.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 491989. 493241.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000250575.1']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1251334.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1405752.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 53312.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 675265.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 135895.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 440232.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 137965.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1170343.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 904957. 915976.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000272438.1']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1410618.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 998051.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1062808. 1063288.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000273443.1']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 187958.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1296170.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 17436.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 516479.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 632413.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 185350. 185559. 186469. 187287. 187577. 187890. 188266. 188584. 188902. 195411.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000279457.4' 'ENSG00000279457.4' 'ENSG00000279457.4' 'ENSG00000279457.4' 'ENSG00000279457.4' 'ENSG00000279457.4' 'ENSG00000279457.4' 'ENSG00000279457.4' 'ENSG00000279457.4']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 182746. 183216. 183571. 183901. 184174.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000279928.2' 'ENSG00000279928.2' 'ENSG00000279928.2' 'ENSG00000279928.2']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 874591. 875155. 875625. 876611. 877234.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000283040.1' 'ENSG00000283040.1' 'ENSG00000283040.1' 'ENSG00000283040.1']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1312566.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 30503.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1339708.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 686673.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 451697.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1503661. 1509452.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000284740.1']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 782050.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py:37: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ nan 1098113. 1104598.]' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. x.loc[:, "Start"] = x.Start.shift() .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py::test_introns_single /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/genomicfeatures.py:600: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['ENSG00000285812.1']' has dtype incompatible with int32, please explicitly cast to a compatible dtype first. introns.loc[:, "by_id"] = original_ids[id_column].values .pybuild/cpython3_3.12_pyranges/build/tests/test_unary.py: 2000 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_unary.py:153: FutureWarning: A value is trying to be set on a copy of a DataFrame or Series through chained assignment using an inplace method. The behavior will change in pandas 3.0. This inplace method will never work because the intermediate object on which we are setting values always behaves as a copy. For example, when doing 'df[col].method(value, inplace=True)', try using 'df.method({col: value}, inplace=True)' or df[col] = df[col].method(value) instead, to perform the operation inplace on the original object. result_df.Cluster.replace(cluster_ids, inplace=True) .pybuild/cpython3_3.12_pyranges/build/tests/test_unary.py: 2000 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_unary.py:178: FutureWarning: The default of observed=False is deprecated and will be changed to True in a future version of pandas. Pass observed=False to retain current behavior or observed=True to adopt the future default and silence this warning. for _, gdf in natsorted(df.groupby(groupby)): -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ============== 531 passed, 409566 warnings in 2555.40s (0:42:35) =============== dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p "3.13 3.12" returned exit code 13 make: *** [debian/rules:22: binary] Error 25 dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2 I: copying local configuration E: Failed autobuilding of package I: user script /srv/workspace/pbuilder/3459097/tmp/hooks/C01_cleanup starting debug output: disk usage on i-capture-the-hostname at Wed Jan 22 10:47:43 UTC 2025 Filesystem Size Used Avail Use% Mounted on tmpfs 40G 0 40G 0% /dev/shm I: user script /srv/workspace/pbuilder/3459097/tmp/hooks/C01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3459097 and its subdirectories + PRESULT=1 + false + set +x Starting cleanup. All cleanup done. Wed Jan 22 10:47:46 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-Nq83i6hW, removing. /srv/reproducible-results/rbuild-debian/r-b-build.1OvWq7Kz: total 520 drwxr-xr-x 2 jenkins jenkins 4096 Jan 22 09:22 b1 drwxr-xr-x 2 jenkins jenkins 4096 Jan 22 10:47 b2 -rw-r--r-- 1 jenkins jenkins 2428 Sep 21 12:03 pyranges_0.0.111+ds-8.dsc -rw------- 1 jenkins jenkins 512417 Jan 22 09:22 rbuildlog.EBpd1D3 /srv/reproducible-results/rbuild-debian/r-b-build.1OvWq7Kz/b1: total 1060 -rw-r--r-- 1 jenkins jenkins 508571 Jan 22 09:22 build.log -rw-r--r-- 1 jenkins jenkins 83524 Jan 22 09:22 pyranges_0.0.111+ds-8.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2428 Jan 22 09:22 pyranges_0.0.111+ds-8.dsc -rw-r--r-- 1 jenkins jenkins 7505 Jan 22 09:22 pyranges_0.0.111+ds-8_amd64.buildinfo -rw-r--r-- 1 jenkins jenkins 8387 Jan 22 09:22 pyranges_0.0.111+ds-8_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1327 Jan 22 09:22 pyranges_0.0.111+ds-8_amd64.changes -rw-r--r-- 1 jenkins jenkins 1453 Jan 22 09:22 pyranges_0.0.111+ds-8_source.changes -rw-r--r-- 1 jenkins jenkins 438280 Jan 22 09:22 python3-pyranges_0.0.111+ds-8_all.deb /srv/reproducible-results/rbuild-debian/r-b-build.1OvWq7Kz/b2: total 1912 -rw-r--r-- 1 jenkins jenkins 1957824 Jan 22 10:47 build.log Wed Jan 22 10:47:47 UTC 2025 I: Deleting $TMPDIR on ionos1-amd64.debian.net. pyranges failed to build from source. removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/amd64/pyranges_0.0.111+ds-8.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/amd64/pyranges_0.0.111+ds-8.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/trixie/amd64/pyranges_0.0.111+ds-8.build1.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/trixie/amd64/pyranges_0.0.111+ds-8.build2.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/buildinfo/trixie/amd64/pyranges_0.0.111+ds-8_amd64.buildinfo' removed '/var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/amd64/pyranges_0.0.111+ds-8.diff.gz' Diff of the two buildlogs: -- --- b1/build.log 2025-01-22 09:22:28.731042104 +0000 +++ b2/build.log 2025-01-22 10:47:47.360919996 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Tue Feb 24 03:18:35 -12 2026 -I: pbuilder-time-stamp: 1771946315 +I: Current time: Wed Jan 22 23:22:31 +14 2025 +I: pbuilder-time-stamp: 1737537751 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -30,52 +30,84 @@ dpkg-source: info: applying fix-test_unary.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/2206354/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/3459097/tmp/hooks/D01_modify_environment starting +debug: Running on ionos1-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Jan 22 09:22 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/3459097/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/3459097/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='2f33c3f81d794337928d93118d947e04' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='2206354' - PS1='# ' - PS2='> ' + INVOCATION_ID=77f35d32c14a427c8d8c0784f5330fe2 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=3459097 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.1OvWq7Kz/pbuilderrc_p6EI --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.1OvWq7Kz/b1 --logfile b1/build.log pyranges_0.0.111+ds-8.dsc' - SUDO_GID='111' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://213.165.73.152:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.1OvWq7Kz/pbuilderrc_xqUY --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.1OvWq7Kz/b2 --logfile b2/build.log pyranges_0.0.111+ds-8.dsc' + SUDO_GID=110 + SUDO_UID=105 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://46.16.76.132:3128 I: uname -a - Linux ionos15-amd64 6.11.10+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.11.10-1~bpo12+1 (2024-12-19) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-30-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.124-1 (2025-01-12) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/2206354/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/3459097/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -247,7 +279,7 @@ Get: 112 http://deb.debian.org/debian trixie/main amd64 python3-pytest-xdist all 3.6.1-1 [44.4 kB] Get: 113 http://deb.debian.org/debian trixie/main amd64 python3-sorted-nearest amd64 0.0.39+dfsg-3 [603 kB] Get: 114 http://deb.debian.org/debian trixie/main amd64 samtools amd64 1.20-3 [653 kB] -Fetched 61.3 MB in 2s (40.1 MB/s) +Fetched 61.3 MB in 6s (9732 kB/s) Preconfiguring packages ... Selecting previously unselected package libpython3.12-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19856 files and directories currently installed.) @@ -628,8 +660,8 @@ Setting up tzdata (2024b-6) ... Current default time zone: 'Etc/UTC' -Local time is now: Tue Feb 24 15:19:46 UTC 2026. -Universal Time is now: Tue Feb 24 15:19:46 UTC 2026. +Local time is now: Wed Jan 22 09:24:23 UTC 2025. +Universal Time is now: Wed Jan 22 09:24:23 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libpython3.13-minimal:amd64 (3.13.1-3) ... @@ -734,7 +766,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/pyranges-0.0.111+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../pyranges_0.0.111+ds-8_source.changes +I: user script /srv/workspace/pbuilder/3459097/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/3459097/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/pyranges-0.0.111+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../pyranges_0.0.111+ds-8_source.changes dpkg-buildpackage: info: source package pyranges dpkg-buildpackage: info: source version 0.0.111+ds-8 dpkg-buildpackage: info: source distribution unstable @@ -778,19 +814,19 @@ '/build/reproducible-path/pyranges-0.0.111+ds/tests/f1.bed' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/f1.bed' '/build/reproducible-path/pyranges-0.0.111+ds/tests/f2.bed' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/f2.bed' '/build/reproducible-path/pyranges-0.0.111+ds/tests/test_data' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_data' -'/build/reproducible-path/pyranges-0.0.111+ds/tests/test_data/test_sorted.bam' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_data/test_sorted.bam' -'/build/reproducible-path/pyranges-0.0.111+ds/tests/test_data/test_sorted.bam.bai' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_data/test_sorted.bam.bai' '/build/reproducible-path/pyranges-0.0.111+ds/tests/test_data/ensembl.gtf' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_data/ensembl.gtf' '/build/reproducible-path/pyranges-0.0.111+ds/tests/test_data/gencode.gff3' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_data/gencode.gff3' '/build/reproducible-path/pyranges-0.0.111+ds/tests/test_data/ucsc_df_to_parse.txt' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_data/ucsc_df_to_parse.txt' +'/build/reproducible-path/pyranges-0.0.111+ds/tests/test_data/test_sorted.bam' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_data/test_sorted.bam' +'/build/reproducible-path/pyranges-0.0.111+ds/tests/test_data/test_sorted.bam.bai' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_data/test_sorted.bam.bai' '/build/reproducible-path/pyranges-0.0.111+ds/tests/data' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/data' '/build/reproducible-path/pyranges-0.0.111+ds/tests/data/test_data.py' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/data/test_data.py' -'/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/control.bam' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/example_data/control.bam' -'/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/control.bam.bai' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/example_data/control.bam.bai' -'/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/exons.bed' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/example_data/exons.bed' +'/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/chipseq_background.bed' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/example_data/chipseq_background.bed' '/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/ensembl.gtf' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/example_data/ensembl.gtf' '/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/ucsc_human.bed.gz' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/example_data/ucsc_human.bed.gz' -'/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/chipseq_background.bed' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/example_data/chipseq_background.bed' +'/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/aorta.bed' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/example_data/aorta.bed' +'/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/ensembl_human.gtf.gz' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/example_data/ensembl_human.gtf.gz' +'/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/exons.bed' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/example_data/exons.bed' '/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/f2.bed' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/example_data/f2.bed' '/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/bw.bw' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/example_data/bw.bw' '/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/f1.bed' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/example_data/f1.bed' @@ -798,1250 +834,34361 @@ '/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/lamina.bed' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/example_data/lamina.bed' '/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/gencode_human.gtf.gz' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/example_data/gencode_human.gtf.gz' '/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/chipseq.bed' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/example_data/chipseq.bed' -'/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/aorta.bed' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/example_data/aorta.bed' -'/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/ensembl_human.gtf.gz' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/example_data/ensembl_human.gtf.gz' '/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/chromsizes.bed' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/example_data/chromsizes.bed' '/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/aorta2.bed' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/example_data/aorta2.bed' -I: pybuild base:311: cd /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build; python3.13 -m pytest -v -n 42 +'/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/control.bam' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/example_data/control.bam' +'/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/control.bam.bai' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/example_data/control.bam.bai' +I: pybuild base:311: cd /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build; python3.13 -m pytest -v -n 20 ============================= test session starts ============================== platform linux -- Python 3.13.1, pytest-8.3.4, pluggy-1.5.0 -- /usr/bin/python3.13 cachedir: .pytest_cache hypothesis profile 'default' -> database=DirectoryBasedExampleDatabase(PosixPath('/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/.hypothesis/examples')) rootdir: /build/reproducible-path/pyranges-0.0.111+ds -plugins: hypothesis-6.122.1, typeguard-4.4.1, xdist-3.6.1 -created: 42/42 workers -42 workers [531 items] +plugins: hypothesis-6.122.1, xdist-3.6.1, typeguard-4.4.1 +created: 20/20 workers +20 workers [531 items] scheduling tests via LoadScheduling +tests/test_binary.py::test_k_nearest[None-False-same-last] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain25-method_chain25] tests/test_binary.py::test_nearest[upstream-True-same] -tests/test_binary.py::test_coverage[same] -tests/data/test_data.py::test_all_data -tests/test_binary.py::test_intersect[same] -tests/test_binary.py::test_k_nearest[upstream-False-same-last] -tests/test_binary.py::test_set_union[False] -tests/test_concat.py::test_concat_unstranded_stranded -tests/test_binary.py::test_k_nearest[upstream-True-same-last] -tests/test_binary.py::test_nearest[None-True-same] -tests/test_binary.py::test_nearest[None-False-same] -tests/test_binary.py::test_join[opposite] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain10-method_chain10] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain13-method_chain13] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain4-method_chain4] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain16-method_chain16] -tests/test_binary.py::test_nearest[upstream-False-same] -tests/test_change_chromosome_custom.py::test_change_chromosomes -tests/test_binary.py::test_jaccard[same] -tests/test_binary.py::test_k_nearest[None-True-same-last] -tests/test_binary.py::test_nearest[downstream-False-same] -tests/test_binary.py::test_k_nearest[downstream-True-same-last] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain22-method_chain22] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain7-method_chain7] -tests/test_binary.py::test_nearest[downstream-True-same] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain19-method_chain19] -tests/test_binary.py::test_k_nearest[None-False-same-last] -tests/test_binary.py::test_subtraction[opposite] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain1-method_chain1] tests/test_binary.py::test_overlap[same] -tests/test_binary.py::test_k_nearest[downstream-False-same-last] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain25-method_chain25] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain34-method_chain34] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain43-method_chain43] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain31-method_chain31] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain37-method_chain37] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain28-method_chain28] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain40-method_chain40] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain46-method_chain46] -[gw21] [ 0%] PASSED tests/test_change_chromosome_custom.py::test_change_chromosomes -tests/test_concat.py::test_concat_stranded_unstranded -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain52-method_chain52] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain58-method_chain58] +tests/test_binary.py::test_jaccard[same] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain49-method_chain49] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain55-method_chain55] -[gw22] [ 0%] PASSED tests/test_concat.py::test_concat_unstranded_stranded -tests/test_count_overlaps.py::test_strand_vs_strand_same -[gw21] [ 0%] PASSED tests/test_concat.py::test_concat_stranded_unstranded +tests/test_binary.py::test_nearest[downstream-True-same] +tests/test_binary.py::test_k_nearest[downstream-False-same-last] +tests/test_binary.py::test_nearest[None-True-same] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain1-method_chain1] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain31-method_chain31] +tests/data/test_data.py::test_all_data +tests/test_binary.py::test_coverage[same] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain13-method_chain13] +tests/test_change_chromosome_custom.py::test_change_chromosomes +[gw10] [ 0%] PASSED tests/test_change_chromosome_custom.py::test_change_chromosomes +tests/test_binary.py::test_k_nearest[upstream-False-same-last] +tests/test_concat.py::test_concat_stranded_unstranded +[gw10] [ 0%] PASSED tests/test_concat.py::test_concat_stranded_unstranded tests/test_concat.py::test_concat_unstranded_unstranded -[gw21] [ 0%] PASSED tests/test_concat.py::test_concat_unstranded_unstranded -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain61-method_chain61] -[gw22] [ 0%] PASSED tests/test_count_overlaps.py::test_strand_vs_strand_same +[gw10] [ 0%] PASSED tests/test_concat.py::test_concat_unstranded_unstranded +tests/test_concat.py::test_concat_unstranded_stranded +[gw10] [ 0%] PASSED tests/test_concat.py::test_concat_unstranded_stranded +tests/test_count_overlaps.py::test_strand_vs_strand_same +[gw10] [ 0%] PASSED tests/test_count_overlaps.py::test_strand_vs_strand_same tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain0-method_chain0] [gw0] [ 1%] PASSED tests/data/test_data.py::test_all_data tests/test_binary.py::test_set_intersect[False] -[gw26] [ 1%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain16-method_chain16] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain17-method_chain17] -[gw38] [ 1%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain46-method_chain46] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain47-method_chain47] -[gw34] [ 1%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain34-method_chain34] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain35-method_chain35] -[gw30] [ 1%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain25-method_chain25] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain26-method_chain26] -[gw33] [ 2%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain31-method_chain31] +[gw15] [ 1%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain31-method_chain31] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain32-method_chain32] -[gw37] [ 2%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain43-method_chain43] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain44-method_chain44] -[gw27] [ 2%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain13-method_chain13] +[gw13] [ 1%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain13-method_chain13] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain14-method_chain14] -[gw29] [ 2%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain19-method_chain19] +[gw14] [ 1%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain19-method_chain19] +[gw16] [ 1%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain25-method_chain25] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain20-method_chain20] -[gw41] [ 2%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain58-method_chain58] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain59-method_chain59] -[gw25] [ 3%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain10-method_chain10] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain11-method_chain11] -[gw28] [ 3%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain22-method_chain22] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain23-method_chain23] -[gw31] [ 3%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain28-method_chain28] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain29-method_chain29] -[gw21] [ 3%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain61-method_chain61] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain62-method_chain62] -[gw32] [ 3%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain37-method_chain37] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain26-method_chain26] +[gw19] [ 2%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain43-method_chain43] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain44-method_chain44] +[gw17] [ 2%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain37-method_chain37] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain38-method_chain38] -[gw40] [ 3%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain55-method_chain55] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain56-method_chain56] -[gw20] [ 4%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain1-method_chain1] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain2-method_chain2] -[gw23] [ 4%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain4-method_chain4] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain5-method_chain5] -[gw24] [ 4%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain7-method_chain7] +[gw12] [ 2%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain7-method_chain7] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain8-method_chain8] -[gw36] [ 4%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain49-method_chain49] +[gw11] [ 2%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain1-method_chain1] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain2-method_chain2] +[gw18] [ 2%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain49-method_chain49] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain50-method_chain50] -[gw35] [ 4%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain40-method_chain40] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain41-method_chain41] -[gw39] [ 5%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain52-method_chain52] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain53-method_chain53] -[gw22] [ 5%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain0-method_chain0] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain64-method_chain64] -[gw26] [ 5%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain17-method_chain17] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain18-method_chain18] -[gw38] [ 5%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain47-method_chain47] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain48-method_chain48] -[gw33] [ 5%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain32-method_chain32] +[gw10] [ 3%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain0-method_chain0] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain55-method_chain55] +[gw19] [ 3%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain44-method_chain44] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain45-method_chain45] +[gw15] [ 3%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain32-method_chain32] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain33-method_chain33] -[gw29] [ 6%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain20-method_chain20] +[gw14] [ 3%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain20-method_chain20] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain21-method_chain21] -[gw37] [ 6%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain44-method_chain44] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain45-method_chain45] -[gw28] [ 6%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain23-method_chain23] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain24-method_chain24] -[gw27] [ 6%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain14-method_chain14] +[gw13] [ 3%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain14-method_chain14] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain15-method_chain15] -[gw41] [ 6%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain59-method_chain59] -[gw30] [ 6%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain26-method_chain26] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain60-method_chain60] +[gw16] [ 3%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain26-method_chain26] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain27-method_chain27] -[gw31] [ 7%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain29-method_chain29] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain30-method_chain30] -[gw25] [ 7%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain11-method_chain11] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain12-method_chain12] -[gw21] [ 7%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain62-method_chain62] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain63-method_chain63] -[gw20] [ 7%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain2-method_chain2] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain3-method_chain3] -[gw24] [ 7%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain8-method_chain8] -[gw22] [ 8%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain64-method_chain64] +[gw12] [ 4%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain8-method_chain8] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain9-method_chain9] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain65-method_chain65] -[gw34] [ 8%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain35-method_chain35] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain36-method_chain36] -[gw32] [ 8%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain38-method_chain38] +[gw11] [ 4%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain2-method_chain2] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain3-method_chain3] +[gw17] [ 4%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain38-method_chain38] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain39-method_chain39] -[gw26] [ 8%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain18-method_chain18] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain67-method_chain67] -[gw40] [ 8%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain56-method_chain56] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain57-method_chain57] -[gw36] [ 9%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain50-method_chain50] +[gw18] [ 4%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain50-method_chain50] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain51-method_chain51] -[gw38] [ 9%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain48-method_chain48] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain70-method_chain70] -[gw33] [ 9%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain33-method_chain33] +[gw10] [ 4%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain55-method_chain55] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain56-method_chain56] +[gw19] [ 5%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain45-method_chain45] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain46-method_chain46] +[gw15] [ 5%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain33-method_chain33] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain34-method_chain34] +[gw14] [ 5%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain21-method_chain21] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain22-method_chain22] +[gw13] [ 5%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain15-method_chain15] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain16-method_chain16] +[gw16] [ 5%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain27-method_chain27] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain28-method_chain28] +[gw12] [ 6%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain9-method_chain9] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain10-method_chain10] +[gw19] [ 6%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain46-method_chain46] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain47-method_chain47] +[gw18] [ 6%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain51-method_chain51] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain52-method_chain52] +[gw10] [ 6%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain56-method_chain56] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain57-method_chain57] +[gw11] [ 6%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain3-method_chain3] +[gw13] [ 6%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain16-method_chain16] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain4-method_chain4] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain17-method_chain17] +[gw15] [ 7%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain34-method_chain34] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain35-method_chain35] +[gw14] [ 7%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain22-method_chain22] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain23-method_chain23] +[gw17] [ 7%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain39-method_chain39] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain40-method_chain40] +[gw16] [ 7%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain28-method_chain28] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain29-method_chain29] +[gw12] [ 7%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain10-method_chain10] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain11-method_chain11] +[gw14] [ 8%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain23-method_chain23] +[gw13] [ 8%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain17-method_chain17] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain18-method_chain18] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain24-method_chain24] +[gw11] [ 8%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain4-method_chain4] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain5-method_chain5] +[gw19] [ 8%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain47-method_chain47] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain48-method_chain48] +[gw18] [ 8%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain52-method_chain52] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain53-method_chain53] +[gw10] [ 9%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain57-method_chain57] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain58-method_chain58] +[gw13] [ 9%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain18-method_chain18] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain64-method_chain64] +[gw16] [ 9%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain29-method_chain29] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain30-method_chain30] +[gw15] [ 9%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain35-method_chain35] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain36-method_chain36] +[gw12] [ 9%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain11-method_chain11] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain12-method_chain12] +[gw14] [ 9%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain24-method_chain24] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain73-method_chain73] -[gw37] [ 9%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain45-method_chain45] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain79-method_chain79] -[gw39] [ 9%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain53-method_chain53] +[gw17] [ 10%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain40-method_chain40] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain41-method_chain41] +[gw19] [ 10%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain48-method_chain48] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain81-method_chain81] +[gw10] [ 10%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain58-method_chain58] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain59-method_chain59] +[gw18] [ 10%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain53-method_chain53] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain54-method_chain54] -[gw35] [ 9%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain41-method_chain41] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain42-method_chain42] -[gw28] [ 10%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain24-method_chain24] +[gw13] [ 10%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain64-method_chain64] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain65-method_chain65] +[gw16] [ 11%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain30-method_chain30] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain89-method_chain89] +[gw14] [ 11%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain73-method_chain73] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain74-method_chain74] +[gw19] [ 11%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain81-method_chain81] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain82-method_chain82] -[gw27] [ 10%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain15-method_chain15] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain85-method_chain85] -[gw31] [ 10%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain30-method_chain30] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain94-method_chain94] -[gw30] [ 10%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain27-method_chain27] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain91-method_chain91] -[gw23] [ 10%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain5-method_chain5] +[gw11] [ 11%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain5-method_chain5] +[gw12] [ 11%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain12-method_chain12] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain105-method_chain105] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain6-method_chain6] -[gw41] [ 11%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain60-method_chain60] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain88-method_chain88] -[gw29] [ 11%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain21-method_chain21] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain76-method_chain76] -[gw22] [ 11%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain65-method_chain65] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain66-method_chain66] -[gw21] [ 11%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain63-method_chain63] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain100-method_chain100] -[gw26] [ 11%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain67-method_chain67] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain68-method_chain68] -[gw24] [ 12%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain9-method_chain9] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain106-method_chain106] -[gw25] [ 12%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain12-method_chain12] +[gw17] [ 12%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain41-method_chain41] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain42-method_chain42] +[gw15] [ 12%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain36-method_chain36] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain97-method_chain97] -[gw32] [ 12%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain39-method_chain39] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain112-method_chain112] -[gw37] [ 12%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain79-method_chain79] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain80-method_chain80] -[gw36] [ 12%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain51-method_chain51] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain118-method_chain118] -[gw20] [ 12%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain3-method_chain3] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain103-method_chain103] -[gw40] [ 13%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain57-method_chain57] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain115-method_chain115] -[gw34] [ 13%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain36-method_chain36] -[gw33] [ 13%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain73-method_chain73] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain109-method_chain109] -[gw38] [ 13%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain70-method_chain70] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain74-method_chain74] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain71-method_chain71] -[gw28] [ 13%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain82-method_chain82] +[gw10] [ 12%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain59-method_chain59] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain60-method_chain60] +[gw13] [ 12%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain65-method_chain65] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain66-method_chain66] +[gw14] [ 12%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain74-method_chain74] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain75-method_chain75] +[gw19] [ 12%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain82-method_chain82] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain83-method_chain83] -[gw35] [ 14%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain42-method_chain42] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain124-method_chain124] -[gw31] [ 14%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain94-method_chain94] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain95-method_chain95] -[gw22] [ 14%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain66-method_chain66] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain130-method_chain130] -[gw29] [ 14%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain76-method_chain76] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain77-method_chain77] -[gw30] [ 14%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain91-method_chain91] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain92-method_chain92] -[gw23] [ 15%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain6-method_chain6] +[gw18] [ 13%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain54-method_chain54] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain113-method_chain113] +[gw15] [ 13%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain97-method_chain97] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain98-method_chain98] +[gw17] [ 13%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain42-method_chain42] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain127-method_chain127] -[gw24] [ 15%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain106-method_chain106] +[gw11] [ 13%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain6-method_chain6] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain120-method_chain120] +[gw12] [ 13%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain105-method_chain105] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain106-method_chain106] +[gw16] [ 14%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain89-method_chain89] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain90-method_chain90] +[gw10] [ 14%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain60-method_chain60] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain61-method_chain61] +[gw13] [ 14%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain66-method_chain66] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain67-method_chain67] +[gw19] [ 14%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain83-method_chain83] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain84-method_chain84] +[gw18] [ 14%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain113-method_chain113] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain114-method_chain114] +[gw14] [ 15%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain75-method_chain75] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain76-method_chain76] +[gw5] [ 15%] PASSED tests/test_binary.py::test_jaccard[same] +tests/test_binary.py::test_join[False] +[gw17] [ 15%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain127-method_chain127] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain128-method_chain128] +[gw11] [ 15%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain120-method_chain120] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain121-method_chain121] +[gw13] [ 15%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain67-method_chain67] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain68-method_chain68] +[gw12] [ 16%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain106-method_chain106] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain107-method_chain107] -[gw26] [ 15%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain68-method_chain68] +[gw10] [ 16%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain61-method_chain61] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain62-method_chain62] +[gw16] [ 16%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain90-method_chain90] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain91-method_chain91] +[gw18] [ 16%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain114-method_chain114] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain115-method_chain115] +[gw14] [ 16%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain76-method_chain76] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain77-method_chain77] +[gw15] [ 16%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain98-method_chain98] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain99-method_chain99] +[gw17] [ 17%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain128-method_chain128] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain129-method_chain129] +[gw11] [ 17%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain121-method_chain121] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain122-method_chain122] +[gw19] [ 17%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain84-method_chain84] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain85-method_chain85] +[gw13] [ 17%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain68-method_chain68] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain69-method_chain69] -[gw21] [ 15%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain100-method_chain100] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain101-method_chain101] -[gw41] [ 15%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain88-method_chain88] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain89-method_chain89] -[gw25] [ 16%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain97-method_chain97] -[gw27] [ 16%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain85-method_chain85] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain98-method_chain98] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain86-method_chain86] -[gw37] [ 16%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain80-method_chain80] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain81-method_chain81] -[gw36] [ 16%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain118-method_chain118] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain119-method_chain119] -[gw40] [ 16%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain115-method_chain115] +[gw18] [ 17%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain115-method_chain115] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain116-method_chain116] -[gw39] [ 16%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain54-method_chain54] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain121-method_chain121] -[gw33] [ 17%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain74-method_chain74] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain75-method_chain75] -[gw38] [ 17%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain71-method_chain71] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain72-method_chain72] -[gw32] [ 17%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain112-method_chain112] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain113-method_chain113] -[gw31] [ 17%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain95-method_chain95] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain96-method_chain96] -[gw34] [ 17%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain109-method_chain109] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain110-method_chain110] -[gw28] [ 18%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain83-method_chain83] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain84-method_chain84] -[gw35] [ 18%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain124-method_chain124] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain125-method_chain125] -[gw22] [ 18%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain130-method_chain130] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain131-method_chain131] -[gw30] [ 18%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain92-method_chain92] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain93-method_chain93] -[gw26] [ 18%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain69-method_chain69] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain133-method_chain133] -[gw29] [ 19%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain77-method_chain77] +[gw10] [ 18%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain62-method_chain62] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain63-method_chain63] +[gw12] [ 18%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain107-method_chain107] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain108-method_chain108] +[gw16] [ 18%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain91-method_chain91] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain92-method_chain92] +[gw14] [ 18%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain77-method_chain77] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain78-method_chain78] -[gw23] [ 19%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain127-method_chain127] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain128-method_chain128] -[gw37] [ 19%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain81-method_chain81] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain135-method_chain135] -[gw40] [ 19%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain116-method_chain116] -[gw24] [ 19%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain107-method_chain107] +[gw17] [ 18%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain129-method_chain129] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain130-method_chain130] +[gw11] [ 19%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain122-method_chain122] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain123-method_chain123] +[gw18] [ 19%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain116-method_chain116] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain117-method_chain117] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain108-method_chain108] -[gw20] [ 19%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain103-method_chain103] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain104-method_chain104] -[gw21] [ 20%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain101-method_chain101] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain102-method_chain102] -[gw39] [ 20%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain121-method_chain121] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain122-method_chain122] -[gw38] [ 20%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain72-method_chain72] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain139-method_chain139] -[gw32] [ 20%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain113-method_chain113] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain114-method_chain114] -[gw36] [ 20%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain119-method_chain119] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain120-method_chain120] -[gw31] [ 21%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain96-method_chain96] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain141-method_chain141] -[gw33] [ 21%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain75-method_chain75] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain137-method_chain137] -[gw30] [ 21%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain93-method_chain93] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain145-method_chain145] -[gw41] [ 21%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain89-method_chain89] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain90-method_chain90] -[gw27] [ 21%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain86-method_chain86] -[gw35] [ 22%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain125-method_chain125] +[gw15] [ 19%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain99-method_chain99] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain100-method_chain100] +[gw13] [ 19%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain69-method_chain69] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain70-method_chain70] +[gw19] [ 19%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain85-method_chain85] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain86-method_chain86] +[gw16] [ 19%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain92-method_chain92] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain93-method_chain93] +[gw12] [ 20%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain108-method_chain108] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain109-method_chain109] +[gw1] [ 20%] PASSED tests/test_binary.py::test_overlap[same] +tests/test_binary.py::test_overlap[opposite] +[gw14] [ 20%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain78-method_chain78] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain79-method_chain79] +[gw17] [ 20%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain130-method_chain130] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain131-method_chain131] +[gw10] [ 20%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain63-method_chain63] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain134-method_chain134] +[gw11] [ 21%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain123-method_chain123] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain124-method_chain124] +[gw18] [ 21%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain117-method_chain117] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain118-method_chain118] +[gw15] [ 21%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain100-method_chain100] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain101-method_chain101] +[gw16] [ 21%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain93-method_chain93] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain94-method_chain94] +[gw13] [ 21%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain70-method_chain70] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain71-method_chain71] +[gw12] [ 22%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain109-method_chain109] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain110-method_chain110] +[gw14] [ 22%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain79-method_chain79] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain80-method_chain80] +[gw19] [ 22%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain86-method_chain86] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain87-method_chain87] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain126-method_chain126] -[gw25] [ 22%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain98-method_chain98] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain99-method_chain99] -[gw22] [ 22%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain131-method_chain131] +[gw17] [ 22%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain131-method_chain131] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain132-method_chain132] -[gw34] [ 22%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain110-method_chain110] +[gw18] [ 22%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain118-method_chain118] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain119-method_chain119] +[gw11] [ 22%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain124-method_chain124] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain125-method_chain125] +[gw16] [ 23%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain94-method_chain94] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain95-method_chain95] +[gw10] [ 23%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain134-method_chain134] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain135-method_chain135] +[gw14] [ 23%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain80-method_chain80] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain141-method_chain141] +[gw13] [ 23%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain71-method_chain71] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain72-method_chain72] +[gw12] [ 23%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain110-method_chain110] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain111-method_chain111] -[gw23] [ 22%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain128-method_chain128] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain129-method_chain129] -[gw29] [ 22%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain78-method_chain78] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain147-method_chain147] -[gw40] [ 23%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain117-method_chain117] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain149-method_chain149] -[gw28] [ 23%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain84-method_chain84] +[gw15] [ 24%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain101-method_chain101] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain102-method_chain102] +[gw17] [ 24%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain132-method_chain132] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain133-method_chain133] +[gw19] [ 24%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain87-method_chain87] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain88-method_chain88] +[gw11] [ 24%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain125-method_chain125] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain126-method_chain126] +[gw16] [ 24%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain95-method_chain95] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain96-method_chain96] +[gw13] [ 25%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain72-method_chain72] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain154-method_chain154] +[gw18] [ 25%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain119-method_chain119] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain148-method_chain148] +[gw14] [ 25%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain141-method_chain141] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain142-method_chain142] +[gw10] [ 25%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain135-method_chain135] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain136-method_chain136] +[gw12] [ 25%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain111-method_chain111] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain112-method_chain112] +[gw15] [ 25%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain102-method_chain102] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain103-method_chain103] +[gw4] [ 26%] PASSED tests/test_binary.py::test_nearest[upstream-True-same] +tests/test_binary.py::test_nearest[upstream-True-opposite] +[gw3] [ 26%] PASSED tests/test_binary.py::test_nearest[None-True-same] +tests/test_binary.py::test_nearest[None-True-opposite] +[gw16] [ 26%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain96-method_chain96] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain178-method_chain178] +[gw19] [ 26%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain88-method_chain88] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain166-method_chain166] +[gw11] [ 26%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain126-method_chain126] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain172-method_chain172] +[gw0] [ 27%] PASSED tests/test_binary.py::test_set_intersect[False] +tests/test_binary.py::test_set_intersect[same] +[gw14] [ 27%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain142-method_chain142] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain143-method_chain143] -[gw20] [ 23%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain104-method_chain104] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain105-method_chain105] -[gw24] [ 23%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain108-method_chain108] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain151-method_chain151] -[gw32] [ 23%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain114-method_chain114] +[gw7] [ 27%] PASSED tests/test_binary.py::test_k_nearest[upstream-False-same-last] +tests/test_binary.py::test_k_nearest[upstream-False-False-last] +[gw17] [ 27%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain133-method_chain133] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain160-method_chain160] +[gw13] [ 27%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain154-method_chain154] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain155-method_chain155] -[gw39] [ 24%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain122-method_chain122] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain123-method_chain123] -[gw21] [ 24%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain102-method_chain102] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain153-method_chain153] -[gw37] [ 24%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain135-method_chain135] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain136-method_chain136] -[gw31] [ 24%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain141-method_chain141] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain142-method_chain142] -[gw38] [ 24%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain139-method_chain139] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain140-method_chain140] -[gw30] [ 25%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain145-method_chain145] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain146-method_chain146] -[gw36] [ 25%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain120-method_chain120] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain157-method_chain157] -[gw26] [ 25%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain133-method_chain133] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain134-method_chain134] -[gw22] [ 25%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain132-method_chain132] +[gw8] [ 28%] PASSED tests/test_binary.py::test_nearest[downstream-True-same] +tests/test_binary.py::test_nearest[downstream-True-opposite] +[gw18] [ 28%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain148-method_chain148] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain149-method_chain149] +[gw6] [ 28%] PASSED tests/test_binary.py::test_k_nearest[downstream-False-same-last] +tests/test_binary.py::test_k_nearest[downstream-False-False-last] +[gw12] [ 28%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain112-method_chain112] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain184-method_chain184] +[gw16] [ 28%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain178-method_chain178] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain179-method_chain179] +[gw11] [ 29%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain172-method_chain172] +[gw10] [ 29%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain136-method_chain136] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain173-method_chain173] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain137-method_chain137] +[gw15] [ 29%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain103-method_chain103] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain104-method_chain104] +[gw19] [ 29%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain166-method_chain166] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain167-method_chain167] -[gw23] [ 25%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain129-method_chain129] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain171-method_chain171] -[gw34] [ 25%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain111-method_chain111] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain169-method_chain169] -[gw41] [ 26%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain90-method_chain90] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain159-method_chain159] -[gw33] [ 26%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain137-method_chain137] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain138-method_chain138] -[gw35] [ 26%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain126-method_chain126] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain163-method_chain163] -[gw27] [ 26%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain87-method_chain87] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain161-method_chain161] -[gw25] [ 26%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain99-method_chain99] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain165-method_chain165] -[gw28] [ 27%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain143-method_chain143] +[gw14] [ 29%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain143-method_chain143] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain144-method_chain144] -[gw39] [ 27%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain123-method_chain123] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain175-method_chain175] -[gw32] [ 27%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain155-method_chain155] +[gw17] [ 29%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain160-method_chain160] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain161-method_chain161] +[gw13] [ 30%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain155-method_chain155] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain156-method_chain156] -[gw31] [ 27%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain142-method_chain142] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain179-method_chain179] -[gw40] [ 27%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain149-method_chain149] +[gw9] [ 30%] PASSED tests/test_binary.py::test_k_nearest[None-False-same-last] +tests/test_binary.py::test_k_nearest[None-False-False-last] +[gw16] [ 30%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain179-method_chain179] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain180-method_chain180] +[gw18] [ 30%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain149-method_chain149] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain150-method_chain150] -[gw30] [ 28%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain146-method_chain146] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain183-method_chain183] -[gw20] [ 28%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain105-method_chain105] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain173-method_chain173] -[gw22] [ 28%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain167-method_chain167] +[gw19] [ 30%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain167-method_chain167] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain168-method_chain168] -[gw24] [ 28%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain151-method_chain151] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain152-method_chain152] -[gw21] [ 28%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain153-method_chain153] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain154-method_chain154] -[gw34] [ 29%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain169-method_chain169] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain170-method_chain170] -[gw38] [ 29%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain140-method_chain140] -[gw29] [ 29%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain147-method_chain147] +[gw12] [ 31%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain184-method_chain184] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain185-method_chain185] +[gw14] [ 31%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain144-method_chain144] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain145-method_chain145] +[gw11] [ 31%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain173-method_chain173] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain174-method_chain174] +[gw15] [ 31%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain104-method_chain104] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain190-method_chain190] +[gw10] [ 31%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain137-method_chain137] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain138-method_chain138] +[gw17] [ 32%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain161-method_chain161] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain162-method_chain162] +[gw13] [ 32%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain156-method_chain156] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain157-method_chain157] +[gw2] [ 32%] PASSED tests/test_binary.py::test_coverage[same] +tests/test_binary.py::test_coverage[opposite] +[gw16] [ 32%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain180-method_chain180] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain181-method_chain181] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain148-method_chain148] -[gw36] [ 29%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain157-method_chain157] +[gw11] [ 32%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain174-method_chain174] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain175-method_chain175] +[gw14] [ 32%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain145-method_chain145] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain146-method_chain146] +[gw15] [ 33%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain190-method_chain190] +[gw19] [ 33%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain168-method_chain168] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain191-method_chain191] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain169-method_chain169] +[gw18] [ 33%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain150-method_chain150] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain151-method_chain151] +[gw17] [ 33%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain162-method_chain162] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain163-method_chain163] +[gw12] [ 33%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain185-method_chain185] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain186-method_chain186] +[gw13] [ 34%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain157-method_chain157] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain158-method_chain158] -[gw37] [ 29%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain136-method_chain136] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain177-method_chain177] -[gw23] [ 29%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain171-method_chain171] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain172-method_chain172] -[gw35] [ 30%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain163-method_chain163] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain164-method_chain164] -[gw41] [ 30%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain159-method_chain159] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain160-method_chain160] -[gw25] [ 30%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain165-method_chain165] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain166-method_chain166] -[gw28] [ 30%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain144-method_chain144] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain189-method_chain189] -[gw27] [ 30%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain161-method_chain161] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain162-method_chain162] -[gw26] [ 31%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain134-method_chain134] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain185-method_chain185] -[gw31] [ 31%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain179-method_chain179] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain180-method_chain180] -[gw39] [ 31%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain175-method_chain175] +[gw10] [ 34%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain138-method_chain138] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain139-method_chain139] +[gw15] [ 34%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain191-method_chain191] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain192-method_chain192] +[gw16] [ 34%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain181-method_chain181] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain182-method_chain182] +[gw14] [ 34%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain146-method_chain146] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain147-method_chain147] +[gw11] [ 35%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain175-method_chain175] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain176-method_chain176] -[gw33] [ 31%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain138-method_chain138] +[gw19] [ 35%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain169-method_chain169] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain170-method_chain170] +[gw17] [ 35%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain163-method_chain163] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain164-method_chain164] +[gw13] [ 35%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain158-method_chain158] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain159-method_chain159] +[gw12] [ 35%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain186-method_chain186] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain187-method_chain187] -[gw34] [ 31%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain170-method_chain170] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain201-method_chain201] -[gw32] [ 32%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain156-method_chain156] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain191-method_chain191] -[gw38] [ 32%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain181-method_chain181] -[gw14] [ 32%] PASSED tests/test_binary.py::test_join[opposite] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain182-method_chain182] -tests/test_binary.py::test_reldist -[gw23] [ 32%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain172-method_chain172] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain207-method_chain207] -[gw20] [ 32%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain173-method_chain173] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain174-method_chain174] -[gw40] [ 32%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain150-method_chain150] +[gw18] [ 35%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain151-method_chain151] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain152-method_chain152] +[gw15] [ 36%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain192-method_chain192] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain193-method_chain193] -[gw35] [ 33%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain164-method_chain164] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain209-method_chain209] -[gw37] [ 33%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain177-method_chain177] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain178-method_chain178] -[gw22] [ 33%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain168-method_chain168] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain195-method_chain195] -[gw36] [ 33%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain158-method_chain158] +[gw11] [ 36%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain176-method_chain176] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain177-method_chain177] +[gw19] [ 36%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain170-method_chain170] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain171-method_chain171] +[gw10] [ 36%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain139-method_chain139] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain140-method_chain140] +[gw17] [ 36%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain164-method_chain164] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain165-method_chain165] +[gw16] [ 37%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain182-method_chain182] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain183-method_chain183] +[gw11] [ 37%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain177-method_chain177] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain205-method_chain205] -[gw25] [ 33%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain166-method_chain166] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain213-method_chain213] -[gw41] [ 34%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain160-method_chain160] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain211-method_chain211] -[gw30] [ 34%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain183-method_chain183] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain184-method_chain184] -[gw27] [ 34%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain162-method_chain162] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain215-method_chain215] -[gw39] [ 34%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain176-method_chain176] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain217-method_chain217] -[gw29] [ 34%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain148-method_chain148] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain203-method_chain203] -[gw28] [ 35%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain189-method_chain189] -[gw3] [ 35%] PASSED tests/test_binary.py::test_intersect[same] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain190-method_chain190] -[gw31] [ 35%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain180-method_chain180] -tests/test_binary.py::test_intersect[opposite] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain216-method_chain216] -[gw2] [ 35%] PASSED tests/test_binary.py::test_overlap[same] -tests/test_binary.py::test_overlap[opposite] -[gw21] [ 35%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain154-method_chain154] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain199-method_chain199] -[gw24] [ 35%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain152-method_chain152] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain197-method_chain197] -[gw26] [ 36%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain185-method_chain185] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain186-method_chain186] -[gw32] [ 36%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain191-method_chain191] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain192-method_chain192] -[gw37] [ 36%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain178-method_chain178] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain220-method_chain220] -[gw23] [ 36%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain207-method_chain207] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain208-method_chain208] -[gw40] [ 36%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain193-method_chain193] +[gw15] [ 37%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain193-method_chain193] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain194-method_chain194] -[gw20] [ 37%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain174-method_chain174] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain219-method_chain219] -[gw9] [ 37%] PASSED tests/test_binary.py::test_nearest[upstream-False-same] -[gw35] [ 37%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain209-method_chain209] +[gw14] [ 37%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain147-method_chain147] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain195-method_chain195] +[gw13] [ 37%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain159-method_chain159] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain200-method_chain200] +[gw17] [ 38%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain165-method_chain165] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain220-method_chain220] +[gw5] [ 38%] PASSED tests/test_binary.py::test_join[False] +tests/test_binary.py::test_join[same] +[gw19] [ 38%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain171-method_chain171] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain210-method_chain210] -[gw22] [ 37%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain195-method_chain195] -tests/test_binary.py::test_nearest[upstream-False-opposite] +[gw10] [ 38%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain140-method_chain140] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain215-method_chain215] +[gw18] [ 38%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain152-method_chain152] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain153-method_chain153] +[gw1] [ 38%] PASSED tests/test_binary.py::test_overlap[opposite] +tests/test_binary.py::test_intersect[False] +[gw12] [ 39%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain187-method_chain187] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain188-method_chain188] +[gw15] [ 39%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain194-method_chain194] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain230-method_chain230] +[gw14] [ 39%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain195-method_chain195] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain196-method_chain196] -[gw25] [ 37%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain213-method_chain213] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain214-method_chain214] -[gw36] [ 38%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain205-method_chain205] +[gw11] [ 39%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain205-method_chain205] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain206-method_chain206] -[gw41] [ 38%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain211-method_chain211] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain212-method_chain212] -[gw27] [ 38%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain215-method_chain215] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain222-method_chain222] -[gw31] [ 38%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain216-method_chain216] -[gw38] [ 38%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain182-method_chain182] +[gw19] [ 39%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain210-method_chain210] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain211-method_chain211] +[gw16] [ 40%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain183-method_chain183] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain225-method_chain225] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain218-method_chain218] -[gw28] [ 38%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain190-method_chain190] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain224-method_chain224] -[gw39] [ 39%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain217-method_chain217] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain223-method_chain223] -[gw33] [ 39%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain187-method_chain187] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain188-method_chain188] -[gw30] [ 39%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain184-method_chain184] +[gw17] [ 40%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain220-method_chain220] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain221-method_chain221] -[gw29] [ 39%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain203-method_chain203] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain204-method_chain204] -[gw11] [ 39%] PASSED tests/test_binary.py::test_nearest[downstream-False-same] -[gw34] [ 40%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain201-method_chain201] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain202-method_chain202] -tests/test_binary.py::test_nearest[downstream-False-opposite] -[gw32] [ 40%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain192-method_chain192] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain227-method_chain227] -[gw20] [ 40%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain219-method_chain219] +[gw13] [ 40%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain200-method_chain200] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain201-method_chain201] +[gw10] [ 40%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain215-method_chain215] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain216-method_chain216] +[gw15] [ 40%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain230-method_chain230] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain231-method_chain231] -[gw40] [ 40%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain194-method_chain194] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain230-method_chain230] -[gw37] [ 40%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain220-method_chain220] -[gw25] [ 41%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain214-method_chain214] -[gw13] [ 41%] PASSED tests/test_binary.py::test_jaccard[same] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain228-method_chain228] +[gw18] [ 41%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain153-method_chain153] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain234-method_chain234] -tests/test_binary.py::test_join[False] -[gw35] [ 41%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain210-method_chain210] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain232-method_chain232] -[gw41] [ 41%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain212-method_chain212] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain236-method_chain236] -[gw23] [ 41%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain208-method_chain208] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain229-method_chain229] -[gw26] [ 41%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain186-method_chain186] -[gw21] [ 42%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain199-method_chain199] +[gw16] [ 41%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain225-method_chain225] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain226-method_chain226] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain200-method_chain200] -[gw36] [ 42%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain206-method_chain206] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain235-method_chain235] -[gw7] [ 42%] PASSED tests/test_binary.py::test_nearest[None-False-same] -[gw24] [ 42%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain197-method_chain197] -[gw31] [ 42%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain225-method_chain225] -tests/test_binary.py::test_nearest[None-False-opposite] +[gw19] [ 41%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain211-method_chain211] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain212-method_chain212] +[gw12] [ 41%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain188-method_chain188] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain189-method_chain189] +[gw17] [ 41%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain221-method_chain221] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain222-method_chain222] +[gw11] [ 41%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain206-method_chain206] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain207-method_chain207] +[gw10] [ 42%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain216-method_chain216] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain217-method_chain217] +[gw14] [ 42%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain196-method_chain196] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain197-method_chain197] +[gw16] [ 42%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain226-method_chain226] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain227-method_chain227] +[gw13] [ 42%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain201-method_chain201] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain202-method_chain202] +[gw19] [ 42%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain212-method_chain212] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain213-method_chain213] +[gw11] [ 43%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain207-method_chain207] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain208-method_chain208] +[gw12] [ 43%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain189-method_chain189] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain238-method_chain238] +[gw15] [ 43%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain231-method_chain231] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain232-method_chain232] +[gw18] [ 43%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain234-method_chain234] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain235-method_chain235] +[gw17] [ 43%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain222-method_chain222] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain223-method_chain223] +[gw10] [ 44%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain217-method_chain217] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain218-method_chain218] +[gw16] [ 44%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain227-method_chain227] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain228-method_chain228] +[gw19] [ 44%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain213-method_chain213] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain214-method_chain214] +[gw14] [ 44%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain197-method_chain197] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain198-method_chain198] -[gw39] [ 43%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain223-method_chain223] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain241-method_chain241] -[gw28] [ 43%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain224-method_chain224] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain240-method_chain240] -[gw38] [ 43%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain218-method_chain218] +[gw13] [ 44%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain202-method_chain202] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain203-method_chain203] +[gw12] [ 45%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain238-method_chain238] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain239-method_chain239] -[gw30] [ 43%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain221-method_chain221] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain243-method_chain243] -[gw0] [ 43%] PASSED tests/test_binary.py::test_set_intersect[False] -tests/test_binary.py::test_set_intersect[same] -[gw27] [ 44%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain222-method_chain222] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain237-method_chain237] -[gw37] [ 44%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain228-method_chain228] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain249-method_chain249] -[gw22] [ 44%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain196-method_chain196] +[gw10] [ 45%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain218-method_chain218] +[gw17] [ 45%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain223-method_chain223] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain224-method_chain224] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain219-method_chain219] +[gw11] [ 45%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain208-method_chain208] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain209-method_chain209] +[gw18] [ 45%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain235-method_chain235] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain236-method_chain236] +[gw16] [ 45%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain228-method_chain228] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain229-method_chain229] +[gw19] [ 46%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain214-method_chain214] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain242-method_chain242] +[gw15] [ 46%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain232-method_chain232] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain233-method_chain233] -[gw29] [ 44%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain204-method_chain204] -[gw32] [ 44%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain227-method_chain227] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain244-method_chain244] +[gw12] [ 46%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain239-method_chain239] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain240-method_chain240] +[gw13] [ 46%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain203-method_chain203] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain204-method_chain204] +[gw10] [ 46%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain219-method_chain219] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain250-method_chain250] +[gw16] [ 47%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain229-method_chain229] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain258-method_chain258] +[gw17] [ 47%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain224-method_chain224] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain246-method_chain246] -[gw8] [ 45%] PASSED tests/test_binary.py::test_nearest[upstream-True-same] -[gw40] [ 45%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain230-method_chain230] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain248-method_chain248] -tests/test_binary.py::test_nearest[upstream-True-opposite] -[gw33] [ 45%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain188-method_chain188] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain242-method_chain242] -[gw23] [ 45%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain229-method_chain229] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain253-method_chain253] -[gw6] [ 45%] PASSED tests/test_binary.py::test_nearest[None-True-same] -[gw26] [ 45%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain226-method_chain226] +[gw14] [ 47%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain198-method_chain198] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain199-method_chain199] +[gw19] [ 47%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain242-method_chain242] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain243-method_chain243] +[gw11] [ 47%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain209-method_chain209] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain254-method_chain254] -tests/test_binary.py::test_nearest[None-True-opposite] -[gw10] [ 46%] PASSED tests/test_binary.py::test_nearest[downstream-True-same] -[gw34] [ 46%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain202-method_chain202] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain245-method_chain245] -tests/test_binary.py::test_nearest[downstream-True-opposite] -[gw28] [ 46%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain240-method_chain240] -[gw20] [ 46%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain231-method_chain231] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain260-method_chain260] -[gw39] [ 46%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain241-method_chain241] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain247-method_chain247] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain259-method_chain259] -[gw38] [ 47%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain239-method_chain239] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain261-method_chain261] -[gw25] [ 47%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain234-method_chain234] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain250-method_chain250] -[gw16] [ 47%] PASSED tests/test_binary.py::test_k_nearest[upstream-False-same-last] -tests/test_binary.py::test_k_nearest[upstream-False-False-last] -[gw31] [ 47%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain238-method_chain238] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain257-method_chain257] -[gw30] [ 47%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain243-method_chain243] +[gw4] [ 48%] PASSED tests/test_binary.py::test_nearest[upstream-True-opposite] +tests/test_binary.py::test_nearest[upstream-False-False] +[gw12] [ 48%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain240-method_chain240] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain241-method_chain241] +[gw3] [ 48%] PASSED tests/test_binary.py::test_nearest[None-True-opposite] +tests/test_binary.py::test_nearest[None-False-False] +[gw13] [ 48%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain204-method_chain204] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain266-method_chain266] +[gw15] [ 48%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain233-method_chain233] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain262-method_chain262] -[gw36] [ 48%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain235-method_chain235] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain256-method_chain256] -[gw21] [ 48%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain200-method_chain200] +[gw18] [ 48%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain236-method_chain236] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain237-method_chain237] +[gw16] [ 49%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain258-method_chain258] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain259-method_chain259] +[gw19] [ 49%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain243-method_chain243] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain244-method_chain244] +[gw11] [ 49%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain254-method_chain254] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain255-method_chain255] -[gw35] [ 48%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain232-method_chain232] +[gw8] [ 49%] PASSED tests/test_binary.py::test_nearest[downstream-True-opposite] +[gw17] [ 49%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain246-method_chain246] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain247-method_chain247] +tests/test_binary.py::test_nearest[downstream-False-False] +[gw12] [ 50%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain241-method_chain241] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain273-method_chain273] +[gw14] [ 50%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain199-method_chain199] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain270-method_chain270] +[gw10] [ 50%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain250-method_chain250] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain251-method_chain251] -[gw29] [ 48%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain244-method_chain244] +[gw15] [ 50%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain262-method_chain262] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain263-method_chain263] +[gw19] [ 50%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain244-method_chain244] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain245-method_chain245] +[gw16] [ 51%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain259-method_chain259] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain260-method_chain260] +[gw13] [ 51%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain266-method_chain266] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain267-method_chain267] -[gw24] [ 48%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain198-method_chain198] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain258-method_chain258] -[gw27] [ 48%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain237-method_chain237] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain264-method_chain264] -[gw33] [ 49%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain242-method_chain242] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain270-method_chain270] -[gw37] [ 49%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain249-method_chain249] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain265-method_chain265] -[gw41] [ 49%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain236-method_chain236] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain252-method_chain252] -[gw12] [ 49%] PASSED tests/test_binary.py::test_k_nearest[downstream-False-same-last] -[gw22] [ 49%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain233-method_chain233] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain266-method_chain266] -tests/test_binary.py::test_k_nearest[downstream-False-False-last] -[gw23] [ 50%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain253-method_chain253] +[gw18] [ 51%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain237-method_chain237] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain276-method_chain276] +[gw11] [ 51%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain255-method_chain255] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain256-method_chain256] +[gw14] [ 51%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain270-method_chain270] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain271-method_chain271] -[gw40] [ 50%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain248-method_chain248] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain269-method_chain269] -[gw38] [ 50%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain261-method_chain261] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain277-method_chain277] -[gw28] [ 50%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain260-method_chain260] +[gw12] [ 51%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain273-method_chain273] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain274-method_chain274] -[gw26] [ 50%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain254-method_chain254] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain272-method_chain272] -[gw32] [ 51%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain246-method_chain246] +[gw15] [ 52%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain263-method_chain263] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain264-method_chain264] +[gw13] [ 52%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain267-method_chain267] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain268-method_chain268] -[gw30] [ 51%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain262-method_chain262] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain280-method_chain280] -[gw20] [ 51%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain247-method_chain247] +[gw17] [ 52%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain247-method_chain247] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain248-method_chain248] +[gw10] [ 52%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain251-method_chain251] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain252-method_chain252] +[gw0] [ 52%] PASSED tests/test_binary.py::test_set_intersect[same] +tests/test_binary.py::test_set_union[False] +[gw16] [ 53%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain260-method_chain260] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain261-method_chain261] +[gw18] [ 53%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain276-method_chain276] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain277-method_chain277] +[gw11] [ 53%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain256-method_chain256] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain257-method_chain257] +[gw12] [ 53%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain274-method_chain274] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain275-method_chain275] -[gw39] [ 51%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain259-method_chain259] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain276-method_chain276] -[gw36] [ 51%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain256-method_chain256] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain281-method_chain281] -[gw21] [ 51%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain255-method_chain255] +[gw19] [ 53%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain245-method_chain245] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain279-method_chain279] +[gw15] [ 54%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain264-method_chain264] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain265-method_chain265] +[gw13] [ 54%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain268-method_chain268] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain269-method_chain269] +[gw16] [ 54%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain261-method_chain261] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain282-method_chain282] -[gw29] [ 52%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain267-method_chain267] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain284-method_chain284] -[gw24] [ 52%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain258-method_chain258] +[gw18] [ 54%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain277-method_chain277] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain278-method_chain278] +[gw6] [ 54%] PASSED tests/test_binary.py::test_k_nearest[downstream-False-False-last] +[gw10] [ 54%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain252-method_chain252] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain253-method_chain253] +[gw14] [ 55%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain271-method_chain271] +[gw17] [ 55%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain248-method_chain248] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain272-method_chain272] +tests/test_binary.py::test_k_nearest[downstream-True-opposite-last] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain249-method_chain249] +[gw11] [ 55%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain257-method_chain257] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain285-method_chain285] -[gw27] [ 52%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain264-method_chain264] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain286-method_chain286] -[gw33] [ 52%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain270-method_chain270] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain287-method_chain287] -[gw31] [ 52%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain257-method_chain257] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain279-method_chain279] -[gw37] [ 53%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain265-method_chain265] +[gw7] [ 55%] PASSED tests/test_binary.py::test_k_nearest[upstream-False-False-last] +[gw12] [ 55%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain275-method_chain275] +tests/test_binary.py::test_k_nearest[upstream-True-opposite-last] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain288-method_chain288] -[gw19] [ 53%] PASSED tests/test_binary.py::test_k_nearest[None-False-same-last] -tests/test_binary.py::test_k_nearest[None-False-False-last] -[gw34] [ 53%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain245-method_chain245] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain273-method_chain273] -[gw35] [ 53%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain251-method_chain251] +[gw15] [ 56%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain265-method_chain265] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain291-method_chain291] +[gw19] [ 56%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain279-method_chain279] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain280-method_chain280] +[gw18] [ 56%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain278-method_chain278] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain297-method_chain297] +[gw13] [ 56%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain269-method_chain269] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain294-method_chain294] +[gw14] [ 56%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain272-method_chain272] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain303-method_chain303] +[gw10] [ 57%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain253-method_chain253] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain300-method_chain300] +[gw17] [ 57%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain249-method_chain249] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain306-method_chain306] +[gw16] [ 57%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain282-method_chain282] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain283-method_chain283] -[gw38] [ 53%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain277-method_chain277] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain293-method_chain293] -[gw40] [ 54%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain269-method_chain269] +[gw12] [ 57%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain288-method_chain288] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain289-method_chain289] +[gw1] [ 57%] PASSED tests/test_binary.py::test_intersect[False] +tests/test_binary.py::test_intersect[same] +[gw15] [ 58%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain291-method_chain291] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain292-method_chain292] -[gw32] [ 54%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain268-method_chain268] -[gw28] [ 54%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain274-method_chain274] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain296-method_chain296] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain294-method_chain294] -[gw26] [ 54%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain272-method_chain272] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain295-method_chain295] -[gw25] [ 54%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain250-method_chain250] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain278-method_chain278] -[gw23] [ 54%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain271-method_chain271] -[gw22] [ 55%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain266-method_chain266] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain291-method_chain291] -[gw20] [ 55%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain275-method_chain275] +[gw5] [ 58%] PASSED tests/test_binary.py::test_join[same] +tests/test_binary.py::test_join[opposite] +[gw12] [ 58%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain289-method_chain289] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain290-method_chain290] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain298-method_chain298] -[gw41] [ 55%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain252-method_chain252] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain289-method_chain289] -[gw39] [ 55%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain276-method_chain276] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain299-method_chain299] -[gw1] [ 55%] PASSED tests/test_binary.py::test_set_union[False] -[gw31] [ 56%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain279-method_chain279] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain306-method_chain306] -[gw37] [ 56%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain288-method_chain288] -tests/test_binary.py::test_set_union[same] +[gw14] [ 58%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain303-method_chain303] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain304-method_chain304] +[gw11] [ 58%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain285-method_chain285] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain286-method_chain286] +[gw19] [ 58%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain280-method_chain280] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain281-method_chain281] +[gw16] [ 59%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain283-method_chain283] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain284-method_chain284] +[gw10] [ 59%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain300-method_chain300] +[gw17] [ 59%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain306-method_chain306] +[gw15] [ 59%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain292-method_chain292] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain307-method_chain307] -[gw21] [ 56%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain282-method_chain282] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain293-method_chain293] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain301-method_chain301] -[gw38] [ 56%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain293-method_chain293] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain310-method_chain310] -[gw29] [ 56%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain284-method_chain284] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain302-method_chain302] -[gw33] [ 57%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain287-method_chain287] +[gw18] [ 59%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain297-method_chain297] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain298-method_chain298] +[gw9] [ 60%] PASSED tests/test_binary.py::test_k_nearest[None-False-False-last] +tests/test_binary.py::test_k_nearest[None-True-opposite-last] +[gw13] [ 60%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain294-method_chain294] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain295-method_chain295] +[gw12] [ 60%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain290-method_chain290] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain309-method_chain309] +[gw2] [ 60%] PASSED tests/test_binary.py::test_coverage[opposite] +tests/test_binary.py::test_subtraction[same] +[gw14] [ 60%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain304-method_chain304] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain305-method_chain305] -[gw27] [ 57%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain286-method_chain286] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain304-method_chain304] -[gw34] [ 57%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain273-method_chain273] +[gw15] [ 61%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain293-method_chain293] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain315-method_chain315] +[gw16] [ 61%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain284-method_chain284] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain313-method_chain313] +[gw17] [ 61%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain307-method_chain307] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain308-method_chain308] -[gw30] [ 57%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain280-method_chain280] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain297-method_chain297] -[gw40] [ 57%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain292-method_chain292] +[gw11] [ 61%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain286-method_chain286] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain287-method_chain287] +[gw19] [ 61%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain281-method_chain281] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain311-method_chain311] -[gw36] [ 58%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain281-method_chain281] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain300-method_chain300] -[gw4] [ 58%] PASSED tests/test_binary.py::test_coverage[same] -[gw23] [ 58%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain291-method_chain291] -tests/test_binary.py::test_coverage[opposite] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain316-method_chain316] -[gw41] [ 58%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain289-method_chain289] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain319-method_chain319] -[gw22] [ 58%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain290-method_chain290] +[gw10] [ 61%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain301-method_chain301] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain302-method_chain302] +[gw18] [ 62%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain298-method_chain298] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain299-method_chain299] +[gw12] [ 62%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain309-method_chain309] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain310-method_chain310] +[gw13] [ 62%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain295-method_chain295] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain296-method_chain296] +[gw16] [ 62%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain313-method_chain313] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain314-method_chain314] +[gw11] [ 62%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain287-method_chain287] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain321-method_chain321] +[gw14] [ 63%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain305-method_chain305] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain317-method_chain317] -[gw24] [ 58%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain285-method_chain285] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain303-method_chain303] -[gw25] [ 59%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain278-method_chain278] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain315-method_chain315] -[gw35] [ 59%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain283-method_chain283] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain309-method_chain309] -[gw32] [ 59%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain296-method_chain296] +[gw19] [ 63%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain311-method_chain311] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain312-method_chain312] -[gw38] [ 59%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain310-method_chain310] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain324-method_chain324] -[gw26] [ 59%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain295-method_chain295] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain314-method_chain314] -[gw28] [ 60%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain294-method_chain294] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain313-method_chain313] -[gw20] [ 60%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain298-method_chain298] +[gw15] [ 63%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain315-method_chain315] +[gw17] [ 63%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain308-method_chain308] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain316-method_chain316] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain319-method_chain319] +[gw12] [ 63%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain310-method_chain310] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain327-method_chain327] +[gw10] [ 64%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain302-method_chain302] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain323-method_chain323] +[gw13] [ 64%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain296-method_chain296] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain329-method_chain329] +[gw16] [ 64%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain314-method_chain314] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain331-method_chain331] +[gw14] [ 64%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain317-method_chain317] +[gw18] [ 64%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain299-method_chain299] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain318-method_chain318] -[gw31] [ 60%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain306-method_chain306] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain321-method_chain321] -[gw33] [ 60%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain305-method_chain305] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain326-method_chain326] -[gw29] [ 60%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain302-method_chain302] -[gw37] [ 61%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain307-method_chain307] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain325-method_chain325] +[gw11] [ 64%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain321-method_chain321] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain322-method_chain322] -[gw21] [ 61%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain301-method_chain301] -[gw40] [ 61%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain311-method_chain311] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain323-method_chain323] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain330-method_chain330] -[gw27] [ 61%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain304-method_chain304] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain327-method_chain327] -[gw39] [ 61%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain299-method_chain299] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain320-method_chain320] -[gw17] [ 61%] PASSED tests/test_binary.py::test_k_nearest[upstream-True-same-last] -[gw15] [ 62%] PASSED tests/test_binary.py::test_k_nearest[downstream-True-same-last] -[gw5] [ 62%] PASSED tests/test_binary.py::test_subtraction[opposite] -tests/test_binary.py::test_k_nearest[upstream-True-False-last] -[gw41] [ 62%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain319-method_chain319] -tests/test_binary.py::test_k_nearest[downstream-True-False-last] -[gw34] [ 62%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain308-method_chain308] +[gw19] [ 65%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain312-method_chain312] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain333-method_chain333] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain328-method_chain328] -tests/test_binary.py::test_subtraction[False] -[gw22] [ 62%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain317-method_chain317] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain334-method_chain334] -[gw23] [ 63%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain316-method_chain316] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain332-method_chain332] -[gw36] [ 63%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain300-method_chain300] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain331-method_chain331] -[gw30] [ 63%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain297-method_chain297] -[gw32] [ 63%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain312-method_chain312] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain338-method_chain338] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain329-method_chain329] -[gw24] [ 63%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain303-method_chain303] +[gw17] [ 65%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain319-method_chain319] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain320-method_chain320] +[gw15] [ 65%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain316-method_chain316] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain335-method_chain335] -[gw35] [ 64%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain309-method_chain309] +[gw12] [ 65%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain327-method_chain327] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain328-method_chain328] +[gw10] [ 65%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain323-method_chain323] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain324-method_chain324] +[gw18] [ 66%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain325-method_chain325] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain326-method_chain326] +[gw14] [ 66%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain318-method_chain318] +[gw12] [ 66%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain328-method_chain328] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain337-method_chain337] -[gw38] [ 64%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain324-method_chain324] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain343-method_chain343] +[gw16] [ 66%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain331-method_chain331] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain332-method_chain332] +[gw10] [ 66%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain324-method_chain324] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain345-method_chain345] +[gw11] [ 67%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain322-method_chain322] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain339-method_chain339] -[gw25] [ 64%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain315-method_chain315] +[gw17] [ 67%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain320-method_chain320] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain341-method_chain341] +[gw19] [ 67%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain333-method_chain333] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain334-method_chain334] +[gw13] [ 67%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain329-method_chain329] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain330-method_chain330] +[gw15] [ 67%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain335-method_chain335] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain336-method_chain336] -[gw33] [ 64%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain326-method_chain326] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain344-method_chain344] -[gw26] [ 64%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain314-method_chain314] +[gw18] [ 67%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain326-method_chain326] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain347-method_chain347] +[gw14] [ 68%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain337-method_chain337] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain338-method_chain338] +[gw11] [ 68%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain339-method_chain339] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain340-method_chain340] -[gw14] [ 64%] PASSED tests/test_binary.py::test_reldist -[gw29] [ 65%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain325-method_chain325] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain345-method_chain345] -tests/test_binary.py::test_k_nearest[downstream-False-opposite-last] -[gw28] [ 65%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain313-method_chain313] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain341-method_chain341] -[gw31] [ 65%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain321-method_chain321] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain343-method_chain343] -[gw20] [ 65%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain318-method_chain318] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain342-method_chain342] -[gw27] [ 65%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain327-method_chain327] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain349-method_chain349] -[gw37] [ 66%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain322-method_chain322] +[gw10] [ 68%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain345-method_chain345] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain346-method_chain346] -[gw21] [ 66%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain323-method_chain323] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain347-method_chain347] -[gw34] [ 66%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain328-method_chain328] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain352-method_chain352] -[gw32] [ 66%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain338-method_chain338] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain357-method_chain357] -[gw39] [ 66%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain320-method_chain320] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain350-method_chain350] -[gw40] [ 67%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain330-method_chain330] +[gw17] [ 68%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain341-method_chain341] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain342-method_chain342] +[gw12] [ 68%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain343-method_chain343] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain344-method_chain344] +[gw15] [ 69%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain336-method_chain336] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain351-method_chain351] +[gw16] [ 69%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain332-method_chain332] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain348-method_chain348] -[gw36] [ 67%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain331-method_chain331] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain355-method_chain355] -[gw26] [ 67%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain340-method_chain340] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain363-method_chain363] -[gw23] [ 67%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain332-method_chain332] -[gw35] [ 67%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain337-method_chain337] +[gw13] [ 69%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain330-method_chain330] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain350-method_chain350] +[gw18] [ 69%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain347-method_chain347] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain352-method_chain352] +[gw11] [ 69%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain340-method_chain340] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain354-method_chain354] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain359-method_chain359] -[gw41] [ 67%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain333-method_chain333] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain351-method_chain351] -[gw38] [ 68%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain339-method_chain339] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain360-method_chain360] -[gw22] [ 68%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain334-method_chain334] +[gw14] [ 70%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain338-method_chain338] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain353-method_chain353] -[gw25] [ 68%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain336-method_chain336] -[gw20] [ 68%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain342-method_chain342] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain361-method_chain361] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain368-method_chain368] -[gw24] [ 68%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain335-method_chain335] +[gw19] [ 70%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain334-method_chain334] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain349-method_chain349] +[gw17] [ 70%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain342-method_chain342] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain356-method_chain356] +[gw10] [ 70%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain346-method_chain346] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain355-method_chain355] +[gw15] [ 70%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain351-method_chain351] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain358-method_chain358] -[gw28] [ 69%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain341-method_chain341] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain366-method_chain366] -[gw33] [ 69%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain344-method_chain344] +[gw13] [ 70%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain350-method_chain350] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain360-method_chain360] +[gw11] [ 71%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain354-method_chain354] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain362-method_chain362] -[gw29] [ 69%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain345-method_chain345] +[gw12] [ 71%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain344-method_chain344] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain357-method_chain357] +[gw14] [ 71%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain353-method_chain353] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain363-method_chain363] +[gw18] [ 71%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain352-method_chain352] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain361-method_chain361] +[gw19] [ 71%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain349-method_chain349] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain364-method_chain364] -[gw3] [ 69%] PASSED tests/test_binary.py::test_intersect[opposite] -tests/test_binary.py::test_coverage[False] -[gw2] [ 69%] PASSED tests/test_binary.py::test_overlap[opposite] -tests/test_binary.py::test_intersect[False] -[gw30] [ 70%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain329-method_chain329] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain356-method_chain356] -[gw21] [ 70%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain347-method_chain347] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain371-method_chain371] -[gw27] [ 70%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain349-method_chain349] +[gw16] [ 72%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain348-method_chain348] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain359-method_chain359] +[gw4] [ 72%] PASSED tests/test_binary.py::test_nearest[upstream-False-False] +[gw17] [ 72%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain356-method_chain356] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain365-method_chain365] +tests/test_binary.py::test_nearest[upstream-False-same] +[gw3] [ 72%] PASSED tests/test_binary.py::test_nearest[None-False-False] +tests/test_binary.py::test_nearest[None-False-same] +[gw10] [ 72%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain355-method_chain355] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain366-method_chain366] +[gw15] [ 73%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain358-method_chain358] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain367-method_chain367] +[gw13] [ 73%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain360-method_chain360] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain368-method_chain368] +[gw8] [ 73%] PASSED tests/test_binary.py::test_nearest[downstream-False-False] +[gw11] [ 73%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain362-method_chain362] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain369-method_chain369] -[gw34] [ 70%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain352-method_chain352] +[gw18] [ 73%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain361-method_chain361] +[gw14] [ 74%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain363-method_chain363] +tests/test_binary.py::test_nearest[downstream-False-same] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain372-method_chain372] -[gw18] [ 70%] PASSED tests/test_binary.py::test_k_nearest[None-True-same-last] -tests/test_binary.py::test_k_nearest[None-True-False-last] -[gw37] [ 70%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain346-method_chain346] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain371-method_chain371] +[gw12] [ 74%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain357-method_chain357] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain370-method_chain370] -[gw26] [ 71%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain363-method_chain363] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain377-method_chain377] -[gw38] [ 71%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain360-method_chain360] -[gw32] [ 71%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain357-method_chain357] -[gw35] [ 71%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain359-method_chain359] +[gw16] [ 74%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain359-method_chain359] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain374-method_chain374] +[gw19] [ 74%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain364-method_chain364] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain373-method_chain373] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain381-method_chain381] +[gw17] [ 74%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain365-method_chain365] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain375-method_chain375] +[gw15] [ 74%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain367-method_chain367] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain377-method_chain377] +[gw10] [ 75%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain366-method_chain366] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain376-method_chain376] +[gw13] [ 75%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain368-method_chain368] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain378-method_chain378] +[gw18] [ 75%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain372-method_chain372] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain380-method_chain380] +[gw11] [ 75%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain369-method_chain369] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain379-method_chain379] -[gw31] [ 71%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain343-method_chain343] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain367-method_chain367] -[gw39] [ 72%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain350-method_chain350] -[gw22] [ 72%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain353-method_chain353] -[gw23] [ 72%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain354-method_chain354] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain374-method_chain374] +[gw12] [ 75%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain370-method_chain370] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain382-method_chain382] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain378-method_chain378] -[gw25] [ 72%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain361-method_chain361] +[gw16] [ 76%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain374-method_chain374] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain383-method_chain383] -[gw36] [ 72%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain355-method_chain355] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain376-method_chain376] -[gw20] [ 73%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain368-method_chain368] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain384-method_chain384] -[gw24] [ 73%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain358-method_chain358] +[gw14] [ 76%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain371-method_chain371] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain381-method_chain381] +[gw17] [ 76%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain375-method_chain375] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain385-method_chain385] -[gw41] [ 73%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain351-method_chain351] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain380-method_chain380] -[gw28] [ 73%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain366-method_chain366] +[gw19] [ 76%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain373-method_chain373] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain384-method_chain384] +[gw15] [ 76%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain377-method_chain377] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain386-method_chain386] -[gw40] [ 73%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain348-method_chain348] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain375-method_chain375] -[gw29] [ 74%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain364-method_chain364] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain388-method_chain388] -[gw33] [ 74%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain362-method_chain362] +[gw10] [ 77%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain376-method_chain376] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain387-method_chain387] -[gw34] [ 74%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain372-method_chain372] +[gw5] [ 77%] PASSED tests/test_binary.py::test_join[opposite] +tests/test_binary.py::test_reldist +[gw1] [ 77%] PASSED tests/test_binary.py::test_intersect[same] +tests/test_binary.py::test_intersect[opposite] +[gw12] [ 77%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain382-method_chain382] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain391-method_chain391] +[gw17] [ 77%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain385-method_chain385] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain394-method_chain394] -[gw21] [ 74%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain371-method_chain371] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain392-method_chain392] -[gw27] [ 74%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain369-method_chain369] +[gw18] [ 77%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain380-method_chain380] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain389-method_chain389] +[gw15] [ 78%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain386-method_chain386] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain396-method_chain396] +[gw11] [ 78%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain379-method_chain379] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain390-method_chain390] +[gw10] [ 78%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain387-method_chain387] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain397-method_chain397] +[gw13] [ 78%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain378-method_chain378] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain388-method_chain388] +[gw14] [ 78%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain381-method_chain381] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain393-method_chain393] -[gw37] [ 74%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain370-method_chain370] +[gw16] [ 79%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain383-method_chain383] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain392-method_chain392] +[gw19] [ 79%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain384-method_chain384] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain395-method_chain395] -[gw30] [ 75%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain356-method_chain356] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain391-method_chain391] -[gw31] [ 75%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain367-method_chain367] +[gw12] [ 79%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain391-method_chain391] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain398-method_chain398] +[gw18] [ 79%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain389-method_chain389] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain400-method_chain400] -[gw32] [ 75%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain373-method_chain373] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain397-method_chain397] -[gw26] [ 75%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain377-method_chain377] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain396-method_chain396] -[gw39] [ 75%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain374-method_chain374] +[gw13] [ 79%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain388-method_chain388] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain404-method_chain404] +[gw11] [ 80%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain390-method_chain390] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain402-method_chain402] +[gw17] [ 80%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain394-method_chain394] +[gw15] [ 80%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain396-method_chain396] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain399-method_chain399] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain401-method_chain401] -[gw36] [ 76%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain376-method_chain376] +[gw14] [ 80%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain393-method_chain393] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain405-method_chain405] -[gw28] [ 76%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain386-method_chain386] +[gw12] [ 80%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain398-method_chain398] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain408-method_chain408] +[gw10] [ 80%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain397-method_chain397] +[gw18] [ 81%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain400-method_chain400] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain403-method_chain403] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain409-method_chain409] -[gw38] [ 76%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain381-method_chain381] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain398-method_chain398] -[gw40] [ 76%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain375-method_chain375] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain410-method_chain410] -[gw20] [ 76%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain384-method_chain384] -[gw35] [ 77%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain379-method_chain379] +[gw19] [ 81%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain395-method_chain395] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain407-method_chain407] +[gw16] [ 81%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain392-method_chain392] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain406-method_chain406] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain399-method_chain399] -[gw29] [ 77%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain388-method_chain388] +[gw13] [ 81%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain404-method_chain404] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain410-method_chain410] +[gw11] [ 81%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain402-method_chain402] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain411-method_chain411] -[gw24] [ 77%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain385-method_chain385] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain407-method_chain407] -[gw33] [ 77%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain387-method_chain387] +[gw0] [ 82%] PASSED tests/test_binary.py::test_set_union[False] +[gw15] [ 82%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain401-method_chain401] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain413-method_chain413] +tests/test_binary.py::test_set_union[same] +[gw6] [ 82%] PASSED tests/test_binary.py::test_k_nearest[downstream-True-opposite-last] +tests/test_binary.py::test_k_nearest[downstream-True-same-last] +[gw17] [ 82%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain399-method_chain399] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain412-method_chain412] -[gw9] [ 77%] PASSED tests/test_binary.py::test_nearest[upstream-False-opposite] -tests/test_binary.py::test_nearest[downstream-True-False] -[gw23] [ 77%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain378-method_chain378] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain403-method_chain403] -[gw30] [ 78%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain391-method_chain391] -[gw41] [ 78%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain380-method_chain380] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain408-method_chain408] +[gw12] [ 82%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain408-method_chain408] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain415-method_chain415] +[gw14] [ 83%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain405-method_chain405] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain414-method_chain414] +[gw18] [ 83%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain409-method_chain409] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain417-method_chain417] -[gw22] [ 78%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain382-method_chain382] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain402-method_chain402] -[gw11] [ 78%] PASSED tests/test_binary.py::test_nearest[downstream-False-opposite] -tests/test_binary.py::test_jaccard[False] -[gw25] [ 78%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain383-method_chain383] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain404-method_chain404] -[gw31] [ 79%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain400-method_chain400] +[gw7] [ 83%] PASSED tests/test_binary.py::test_k_nearest[upstream-True-opposite-last] +tests/test_binary.py::test_k_nearest[upstream-True-same-last] +[gw10] [ 83%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain403-method_chain403] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain416-method_chain416] +[gw19] [ 83%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain407-method_chain407] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain418-method_chain418] -[gw28] [ 79%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain409-method_chain409] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain423-method_chain423] -[gw39] [ 79%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain401-method_chain401] +[gw13] [ 83%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain410-method_chain410] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain420-method_chain420] +[gw11] [ 84%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain411-method_chain411] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain421-method_chain421] -[gw34] [ 79%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain394-method_chain394] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain413-method_chain413] -[gw40] [ 79%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain410-method_chain410] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain425-method_chain425] -[gw27] [ 80%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain393-method_chain393] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain415-method_chain415] -[gw33] [ 80%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain412-method_chain412] -[gw36] [ 80%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain405-method_chain405] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain430-method_chain430] +[gw16] [ 84%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain406-method_chain406] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain419-method_chain419] +[gw15] [ 84%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain413-method_chain413] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain422-method_chain422] -[gw29] [ 80%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain411-method_chain411] +[gw17] [ 84%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain412-method_chain412] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain423-method_chain423] +[gw12] [ 84%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain415-method_chain415] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain424-method_chain424] +[gw18] [ 85%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain417-method_chain417] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain426-method_chain426] +[gw14] [ 85%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain414-method_chain414] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain425-method_chain425] +[gw19] [ 85%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain418-method_chain418] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain428-method_chain428] -[gw37] [ 80%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain395-method_chain395] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain416-method_chain416] -[gw24] [ 80%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain407-method_chain407] +[gw10] [ 85%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain416-method_chain416] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain427-method_chain427] +[gw11] [ 85%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain421-method_chain421] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain430-method_chain430] +[gw13] [ 86%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain420-method_chain420] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain429-method_chain429] -[gw26] [ 81%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain396-method_chain396] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain420-method_chain420] -[gw41] [ 81%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain408-method_chain408] +[gw15] [ 86%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain422-method_chain422] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain432-method_chain432] +[gw16] [ 86%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain419-method_chain419] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain431-method_chain431] +[gw17] [ 86%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain423-method_chain423] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain433-method_chain433] -[gw21] [ 81%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain392-method_chain392] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain414-method_chain414] -[gw20] [ 81%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain406-method_chain406] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain426-method_chain426] -[gw30] [ 81%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain417-method_chain417] -[gw32] [ 82%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain397-method_chain397] +[gw12] [ 86%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain424-method_chain424] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain434-method_chain434] -[gw13] [ 82%] PASSED tests/test_binary.py::test_join[False] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain419-method_chain419] -tests/test_binary.py::test_join[same] -[gw35] [ 82%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain399-method_chain399] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain427-method_chain427] -[gw23] [ 82%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain403-method_chain403] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain432-method_chain432] -[gw22] [ 82%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain402-method_chain402] +[gw18] [ 87%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain426-method_chain426] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain435-method_chain435] -[gw28] [ 83%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain423-method_chain423] +[gw14] [ 87%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain425-method_chain425] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain436-method_chain436] +[gw17] [ 87%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain433-method_chain433] +tests/test_getset_attr.py::test_getsetattr_fails +[gw17] [ 87%] PASSED tests/test_getset_attr.py::test_getsetattr_fails +tests/test_io.py::test_read_bed +[gw17] [ 87%] PASSED tests/test_io.py::test_read_bed +tests/test_pickle.py::test_pickle +[gw17] [ 87%] PASSED tests/test_pickle.py::test_pickle +tests/test_stranded.py::test_stranded +[gw17] [ 88%] PASSED tests/test_stranded.py::test_stranded +tests/test_stranded.py::test_unstrand +[gw17] [ 88%] PASSED tests/test_stranded.py::test_unstrand +tests/test_unary.py::test_merge[True] +[gw12] [ 88%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain434-method_chain434] +tests/test_getset_attr.py::test_getsetattr_with_str +[gw12] [ 88%] PASSED tests/test_getset_attr.py::test_getsetattr_with_str +tests/test_unary.py::test_cluster[True] +[gw11] [ 88%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain430-method_chain430] +[gw13] [ 89%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain429-method_chain429] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain439-method_chain439] -[gw7] [ 83%] PASSED tests/test_binary.py::test_nearest[None-False-opposite] -[gw38] [ 83%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain398-method_chain398] -tests/test_binary.py::test_nearest[upstream-True-False] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain424-method_chain424] -[gw39] [ 83%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain421-method_chain421] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain440-method_chain440] -[gw25] [ 83%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain404-method_chain404] +[gw16] [ 89%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain431-method_chain431] +tests/test_getset_attr.py::test_getsetattr +[gw16] [ 89%] PASSED tests/test_getset_attr.py::test_getsetattr +tests/test_unary.py::test_merge_by[True] +[gw19] [ 89%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain428-method_chain428] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain437-method_chain437] -[gw36] [ 83%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain422-method_chain422] +[gw18] [ 89%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain435-method_chain435] tests/test_io.py::test_read_gtf -[gw36] [ 84%] PASSED tests/test_io.py::test_read_gtf +[gw18] [ 90%] PASSED tests/test_io.py::test_read_gtf +tests/test_unary.py::test_init[True] +[gw15] [ 90%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain432-method_chain432] +tests/test_genomicfeatures.py::test_introns_single +[gw10] [ 90%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain427-method_chain427] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain438-method_chain438] +[gw14] [ 90%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain436-method_chain436] +tests/test_io.py::test_read_gff3 +[gw14] [ 90%] PASSED tests/test_io.py::test_read_gff3 tests/windows/test_windows.py::test_windows -[gw36] [ 84%] PASSED tests/windows/test_windows.py::test_windows +[gw14] [ 90%] PASSED tests/windows/test_windows.py::test_windows tests/windows/test_windows.py::test_windows2 -[gw36] [ 84%] PASSED tests/windows/test_windows.py::test_windows2 -[gw27] [ 84%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain415-method_chain415] -tests/test_getset_attr.py::test_getsetattr_fails -[gw27] [ 84%] PASSED tests/test_getset_attr.py::test_getsetattr_fails -[gw31] [ 85%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain418-method_chain418] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain438-method_chain438] -[gw40] [ 85%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain425-method_chain425] -tests/test_getset_attr.py::test_getsetattr -[gw40] [ 85%] PASSED tests/test_getset_attr.py::test_getsetattr -[gw34] [ 85%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain413-method_chain413] -tests/test_genomicfeatures.py::test_introns_single -[gw37] [ 85%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain416-method_chain416] -tests/test_io.py::test_read_bed -[gw37] [ 86%] PASSED tests/test_io.py::test_read_bed -[gw32] [ 86%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain419-method_chain419] -tests/test_unary.py::test_cluster[False] -[gw21] [ 86%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain414-method_chain414] -[gw20] [ 86%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain426-method_chain426] -tests/test_unary.py::test_merge[False] -tests/test_unary.py::test_merge[True] -[gw33] [ 86%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain430-method_chain430] -tests/test_getset_attr.py::test_getsetattr_with_str -[gw33] [ 87%] PASSED tests/test_getset_attr.py::test_getsetattr_with_str -[gw30] [ 87%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain434-method_chain434] -tests/test_unary.py::test_cluster[True] -[gw10] [ 87%] PASSED tests/test_binary.py::test_nearest[downstream-True-opposite] -tests/test_binary.py::test_nearest[downstream-False-False] -[gw8] [ 87%] PASSED tests/test_binary.py::test_nearest[upstream-True-opposite] -tests/test_binary.py::test_nearest[upstream-False-False] -[gw26] [ 87%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain420-method_chain420] -tests/test_stranded.py::test_stranded -[gw26] [ 87%] PASSED tests/test_stranded.py::test_stranded -[gw28] [ 88%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain439-method_chain439] +[gw14] [ 91%] PASSED tests/windows/test_windows.py::test_windows2 +[gw9] [ 91%] PASSED tests/test_binary.py::test_k_nearest[None-True-opposite-last] +tests/test_binary.py::test_k_nearest[None-True-same-last] +[gw11] [ 91%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain439-method_chain439] +tests/test_unary.py::test_cluster_by[False] +[gw13] [ 91%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain440-method_chain440] +tests/test_unary.py::test_cluster_by[True] +[gw19] [ 91%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain437-method_chain437] tests/test_unary.py::test_windows -[gw38] [ 88%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain424-method_chain424] -tests/test_unary.py::test_init[False] -[gw39] [ 88%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain440-method_chain440] -tests/test_unary.py::test_getitem -[gw41] [ 88%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain433-method_chain433] -tests/test_stranded.py::test_unstrand -[gw41] [ 88%] PASSED tests/test_stranded.py::test_unstrand -[gw25] [ 89%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain437-method_chain437] -[gw22] [ 89%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain435-method_chain435] +[gw10] [ 92%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain438-method_chain438] tests/test_unary.py::test_summary -[gw24] [ 89%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain429-method_chain429] -tests/test_unary.py::test_merge_by[False] -tests/test_pickle.py::test_pickle -[gw24] [ 89%] PASSED tests/test_pickle.py::test_pickle -[gw29] [ 89%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain428-method_chain428] -tests/test_io.py::test_read_gff3 -[gw29] [ 90%] PASSED tests/test_io.py::test_read_gff3 -[gw31] [ 90%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain438-method_chain438] -[gw35] [ 90%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain427-method_chain427] -tests/test_unary.py::test_cluster_by[False] -[gw34] [ 90%] PASSED tests/test_genomicfeatures.py::test_introns_single -[gw6] [ 90%] PASSED tests/test_binary.py::test_nearest[None-True-opposite] -tests/test_binary.py::test_nearest[None-False-False] -[gw23] [ 90%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain432-method_chain432] -tests/test_unary.py::test_merge_by[True] -[gw0] [ 91%] PASSED tests/test_binary.py::test_set_intersect[same] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain263-method_chain263] -[gw38] [ 91%] PASSED tests/test_unary.py::test_init[False] -[gw0] [ 91%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain263-method_chain263] -[gw12] [ 91%] PASSED tests/test_binary.py::test_k_nearest[downstream-False-False-last] -tests/test_binary.py::test_k_nearest[downstream-True-opposite-last] -[gw16] [ 91%] PASSED tests/test_binary.py::test_k_nearest[upstream-False-False-last] -tests/test_binary.py::test_k_nearest[upstream-True-opposite-last] -[gw39] [ 92%] PASSED tests/test_unary.py::test_getitem -[gw1] [ 92%] PASSED tests/test_binary.py::test_set_union[same] +[gw15] [ 92%] PASSED tests/test_genomicfeatures.py::test_introns_single +tests/test_unary.py::test_getitem +[gw2] [ 92%] PASSED tests/test_binary.py::test_subtraction[same] +tests/test_binary.py::test_subtraction[opposite] +[gw18] [ 92%] PASSED tests/test_unary.py::test_init[True] +tests/test_unary.py::test_init[False] +[gw5] [ 92%] PASSED tests/test_binary.py::test_reldist +tests/test_binary.py::test_k_nearest[downstream-False-opposite-last] +[gw8] [ 93%] PASSED tests/test_binary.py::test_nearest[downstream-False-same] +tests/test_binary.py::test_nearest[downstream-False-opposite] +[gw1] [ 93%] PASSED tests/test_binary.py::test_intersect[opposite] +[gw4] [ 93%] PASSED tests/test_binary.py::test_nearest[upstream-False-same] +tests/test_binary.py::test_coverage[False] +tests/test_binary.py::test_nearest[upstream-False-opposite] +[gw3] [ 93%] PASSED tests/test_binary.py::test_nearest[None-False-same] +tests/test_binary.py::test_nearest[None-False-opposite] +[gw18] [ 93%] PASSED tests/test_unary.py::test_init[False] +[gw15] [ 93%] PASSED tests/test_unary.py::test_getitem +[gw10] [ 94%] PASSED tests/test_unary.py::test_summary +[gw0] [ 94%] PASSED tests/test_binary.py::test_set_union[same] tests/test_binary.py::test_overlap[False] -[gw2] [ 92%] PASSED tests/test_binary.py::test_intersect[False] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain390-method_chain390] -[gw19] [ 92%] PASSED tests/test_binary.py::test_k_nearest[None-False-False-last] -tests/test_binary.py::test_k_nearest[None-True-opposite-last] -[gw2] [ 92%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain390-method_chain390] -[gw14] [ 93%] PASSED tests/test_binary.py::test_k_nearest[downstream-False-opposite-last] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain365-method_chain365] -[gw14] [ 93%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain365-method_chain365] -[gw4] [ 93%] PASSED tests/test_binary.py::test_coverage[opposite] -tests/test_binary.py::test_subtraction[same] -[gw11] [ 93%] PASSED tests/test_binary.py::test_jaccard[False] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain436-method_chain436] -[gw25] [ 93%] PASSED tests/test_unary.py::test_summary -[gw5] [ 93%] PASSED tests/test_binary.py::test_subtraction[False] +[gw17] [ 94%] PASSED tests/test_unary.py::test_merge[True] +tests/test_unary.py::test_merge[False] +[gw16] [ 94%] PASSED tests/test_unary.py::test_merge_by[True] +tests/test_unary.py::test_merge_by[False] +[gw19] [ 94%] PASSED tests/test_unary.py::test_windows +[gw6] [ 95%] PASSED tests/test_binary.py::test_k_nearest[downstream-True-same-last] +tests/test_binary.py::test_k_nearest[downstream-True-False-last] +[gw8] [ 95%] PASSED tests/test_binary.py::test_nearest[downstream-False-opposite] +tests/test_binary.py::test_jaccard[False] +[gw12] [ 95%] PASSED tests/test_unary.py::test_cluster[True] +tests/test_unary.py::test_cluster[False] +[gw7] [ 95%] PASSED tests/test_binary.py::test_k_nearest[upstream-True-same-last] +tests/test_binary.py::test_k_nearest[upstream-True-False-last] +[gw4] [ 95%] PASSED tests/test_binary.py::test_nearest[upstream-False-opposite] +tests/test_binary.py::test_nearest[downstream-True-False] +[gw3] [ 96%] PASSED tests/test_binary.py::test_nearest[None-False-opposite] +tests/test_binary.py::test_nearest[upstream-True-False] +[gw5] [ 96%] PASSED tests/test_binary.py::test_k_nearest[downstream-False-opposite-last] +[gw2] [ 96%] PASSED tests/test_binary.py::test_subtraction[opposite] +tests/test_binary.py::test_subtraction[False] +[gw13] [ 96%] PASSED tests/test_unary.py::test_cluster_by[True] +[gw9] [ 96%] PASSED tests/test_binary.py::test_k_nearest[None-True-same-last] +tests/test_binary.py::test_k_nearest[None-True-False-last] +[gw1] [ 96%] PASSED tests/test_binary.py::test_coverage[False] +[gw0] [ 97%] PASSED tests/test_binary.py::test_overlap[False] +[gw17] [ 97%] PASSED tests/test_unary.py::test_merge[False] +[gw11] [ 97%] PASSED tests/test_unary.py::test_cluster_by[False] +[gw8] [ 97%] PASSED tests/test_binary.py::test_jaccard[False] +[gw16] [ 97%] PASSED tests/test_unary.py::test_merge_by[False] +[gw3] [ 98%] PASSED tests/test_binary.py::test_nearest[upstream-True-False] +[gw4] [ 98%] PASSED tests/test_binary.py::test_nearest[downstream-True-False] +[gw12] [ 98%] PASSED tests/test_unary.py::test_cluster[False] +[gw6] [ 98%] PASSED tests/test_binary.py::test_k_nearest[downstream-True-False-last] +tests/test_binary.py::test_k_nearest[upstream-False-opposite-last] +[gw2] [ 98%] PASSED tests/test_binary.py::test_subtraction[False] tests/test_binary.py::test_nearest[None-True-False] -[gw11] [ 94%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain436-method_chain436] -[gw13] [ 94%] PASSED tests/test_binary.py::test_join[same] -tests/test_unary.py::test_cluster_by[True] -[gw20] [ 94%] PASSED tests/test_unary.py::test_merge[False] -[gw21] [ 94%] PASSED tests/test_unary.py::test_merge[True] -[gw9] [ 94%] PASSED tests/test_binary.py::test_nearest[downstream-True-False] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain431-method_chain431] -[gw3] [ 95%] PASSED tests/test_binary.py::test_coverage[False] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain389-method_chain389] -[gw10] [ 95%] PASSED tests/test_binary.py::test_nearest[downstream-False-False] -[gw17] [ 95%] PASSED tests/test_binary.py::test_k_nearest[upstream-True-False-last] +[gw7] [ 99%] PASSED tests/test_binary.py::test_k_nearest[upstream-True-False-last] tests/test_binary.py::test_k_nearest[None-False-opposite-last] -[gw8] [ 95%] PASSED tests/test_binary.py::test_nearest[upstream-False-False] -[gw15] [ 95%] PASSED tests/test_binary.py::test_k_nearest[downstream-True-False-last] -tests/test_binary.py::test_k_nearest[upstream-False-opposite-last] -[gw9] [ 96%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain431-method_chain431] -[gw7] [ 96%] PASSED tests/test_binary.py::test_nearest[upstream-True-False] -tests/test_unary.py::test_init[True] -[gw3] [ 96%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain389-method_chain389] -[gw28] [ 96%] PASSED tests/test_unary.py::test_windows -[gw22] [ 96%] PASSED tests/test_unary.py::test_merge_by[False] -[gw23] [ 96%] PASSED tests/test_unary.py::test_merge_by[True] -[gw6] [ 97%] PASSED tests/test_binary.py::test_nearest[None-False-False] -[gw1] [ 97%] PASSED tests/test_binary.py::test_overlap[False] -[gw30] [ 97%] PASSED tests/test_unary.py::test_cluster[True] -[gw18] [ 97%] PASSED tests/test_binary.py::test_k_nearest[None-True-False-last] +[gw9] [ 99%] PASSED tests/test_binary.py::test_k_nearest[None-True-False-last] tests/test_binary.py::test_k_nearest_1_vs_nearest -[gw7] [ 97%] PASSED tests/test_unary.py::test_init[True] -[gw32] [ 98%] PASSED tests/test_unary.py::test_cluster[False] -[gw12] [ 98%] PASSED tests/test_binary.py::test_k_nearest[downstream-True-opposite-last] -[gw16] [ 98%] PASSED tests/test_binary.py::test_k_nearest[upstream-True-opposite-last] -[gw19] [ 98%] PASSED tests/test_binary.py::test_k_nearest[None-True-opposite-last] -[gw5] [ 98%] PASSED tests/test_binary.py::test_nearest[None-True-False] -[gw4] [ 99%] PASSED tests/test_binary.py::test_subtraction[same] -[gw15] [ 99%] PASSED tests/test_binary.py::test_k_nearest[upstream-False-opposite-last] -[gw17] [ 99%] PASSED tests/test_binary.py::test_k_nearest[None-False-opposite-last] -[gw35] [ 99%] PASSED tests/test_unary.py::test_cluster_by[False] -[gw13] [ 99%] PASSED tests/test_unary.py::test_cluster_by[True] -[gw18] [100%] PASSED tests/test_binary.py::test_k_nearest_1_vs_nearest - +[gw6] [ 99%] PASSED tests/test_binary.py::test_k_nearest[upstream-False-opposite-last] +[gw2] [ 99%] PASSED tests/test_binary.py::test_nearest[None-True-False] +[gw9] [ 99%] PASSED tests/test_binary.py::test_k_nearest_1_vs_nearest +[gw7] [100%] FAILED tests/test_binary.py::test_k_nearest[None-False-opposite-last] + +=================================== FAILURES =================================== +___________________ test_k_nearest[None-False-opposite-last] ___________________ +[gw7] linux -- Python 3.13.1 /usr/bin/python3.13 + +nearest_how = None, overlap = False, strandedness = 'opposite', ties = 'last' + + @pytest.mark.bedtools +> @pytest.mark.explore + +tests/test_binary.py:510: +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ +tests/test_binary.py:559: in test_k_nearest + compare_results_nearest(bedtools_df, result) +tests/test_binary.py:107: in compare_results_nearest + assert_df_equal(result_df, bedtools_df) +tests/helpers.py:58: in assert_df_equal + print("index equal", df1.index == df2.index) +/usr/lib/python3/dist-packages/pandas/core/ops/common.py:76: in new_method + return method(self, other) +/usr/lib/python3/dist-packages/pandas/core/arraylike.py:40: in __eq__ + return self._cmp_method(other, operator.eq) +/usr/lib/python3/dist-packages/pandas/core/indexes/range.py:1070: in _cmp_method + return super()._cmp_method(other, op) +_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ + +self = RangeIndex(start=0, stop=2, step=1) +other = RangeIndex(start=0, stop=1, step=1), op = + + def _cmp_method(self, other, op): + """ + Wrapper used to dispatch comparison operations. + """ + if self.is_(other): + # fastpath + if op in {operator.eq, operator.le, operator.ge}: + arr = np.ones(len(self), dtype=bool) + if self._can_hold_na and not isinstance(self, ABCMultiIndex): + # TODO: should set MultiIndex._can_hold_na = False? + arr[self.isna()] = False + return arr + elif op is operator.ne: + arr = np.zeros(len(self), dtype=bool) + if self._can_hold_na and not isinstance(self, ABCMultiIndex): + arr[self.isna()] = True + return arr + + if isinstance(other, (np.ndarray, Index, ABCSeries, ExtensionArray)) and len( + self + ) != len(other): +> raise ValueError("Lengths must match to compare") +E ValueError: Lengths must match to compare +E Falsifying example: test_k_nearest( +E nearest_how=None, +E overlap=False, +E strandedness='opposite', +E ties='last', +E gr=+--------------+-----------+-----------+------------+-----------+--------------+ +E | Chromosome | Start | End | Name | Score | Strand | +E | (category) | (int64) | (int64) | (object) | (int64) | (category) | +E |--------------+-----------+-----------+------------+-----------+--------------| +E | chr1 | 2 | 3 | a | 0 | + | +E | chr1 | 2 | 3 | a | 0 | - | +E | chr1 | 2 | 3 | a | 0 | - | +E | chr1 | 2 | 3 | a | 0 | - | +E | ... | ... | ... | ... | ... | ... | +E | chr1 | 2 | 3 | a | 0 | - | +E | chr1 | 2 | 3 | a | 0 | - | +E | chr1 | 2 | 3 | a | 0 | - | +E | chr1 | 2 | 3 | a | 0 | - | +E +--------------+-----------+-----------+------------+-----------+--------------+ +E Stranded PyRanges object has 9 rows and 6 columns from 2 chromosomes. +E For printing, the PyRanges was sorted on Chromosome and Strand., +E gr2=+--------------+-----------+-----------+------------+-----------+--------------+ +E | Chromosome | Start | End | Name | Score | Strand | +E | (category) | (int64) | (int64) | (object) | (int64) | (category) | +E |--------------+-----------+-----------+------------+-----------+--------------| +E | chr1 | 1 | 2 | a | 0 | - | +E | chr1 | 3 | 4 | a | 0 | - | +E +--------------+-----------+-----------+------------+-----------+--------------+ +E Stranded PyRanges object has 2 rows and 6 columns from 1 chromosomes. +E For printing, the PyRanges was sorted on Chromosome and Strand., +E ) +E Explanation: +E These lines were always and only run by failing examples: +E /usr/lib/python3/dist-packages/pandas/core/indexes/base.py:7182 +E /usr/lib/python3/dist-packages/pandas/core/indexes/base.py:7184 +E /usr/lib/python3/dist-packages/pandas/core/indexes/range.py:1070 +E +E You can reproduce this example by temporarily adding @reproduce_failure('6.122.1', b'AXicY2QAAUYGBmnfB0BSOTAESKpPucMIFgaSyaZ2QDLd2wNIdorxA8nJEy8ANTCCABMjIzMDEyMLIyMrIyMbIyM7IyMHWCfYSDAJVscBMQsmzAjigllMDEiAEQCHXAh0') as a decorator on your test case + +/usr/lib/python3/dist-packages/pandas/core/indexes/base.py:7185: ValueError +----------------------------- Captured stdout call ----------------------------- +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp2gip6x9_/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp2gip6x9_/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpcuq7p0cy/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpcuq7p0cy/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp4l77kooy/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp4l77kooy/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpwu_t3szx/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpwu_t3szx/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpkg4jogs5/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpkg4jogs5/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp6sjktzev/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp6sjktzev/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpe5c6_ypq/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpe5c6_ypq/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 3946610 3952299 + 3119527 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 3946610 | 3952299 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 3946610 3952299 + 3119527 +df2 + Chromosome Start End Strand Distance +0 chr1 3946610 3952299 + 3119527 +Actual + Chromosome Start End Strand Distance +0 chr1 3946610 3952299 + 3119527 + +Expected + Chromosome Start End Strand Distance +0 chr1 3946610 3952299 + 3119527 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=1, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +index equal [ True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp3x4plr_b/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp3x4plr_b/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpkct_o9py/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpkct_o9py/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpoi413le_/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpoi413le_/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpwvmhqb57/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpwvmhqb57/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpu1h_t3rm/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpu1h_t3rm/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 1 8332 + 3380605 +1 chr1 1552303 1560367 + 1828570 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 1 | 8332 | a | 0 | ... | +| chr1 | 1552303 | 1560367 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 1 8332 + 3380605 +1 chr1 1552303 1560367 + 1828570 +df2 + Chromosome Start End Strand Distance +0 chr1 1 8332 + 3380605 +1 chr1 1552303 1560367 + 1828570 +Actual + Chromosome Start End Strand Distance +0 chr1 1 8332 + 3380605 +1 chr1 1552303 1560367 + 1828570 + +Expected + Chromosome Start End Strand Distance +0 chr1 1 8332 + 3380605 +1 chr1 1552303 1560367 + 1828570 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=2, step=1) +Expected index +RangeIndex(start=0, stop=2, step=1) +index equal [ True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpw85xxal7/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpw85xxal7/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 1552303 1552304 + 1552302 +1 chr1 5702111 5702112 + 5702110 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 1552303 | 1552304 | a | 0 | ... | +| chr1 | 5702111 | 5702112 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 1552303 1552304 + 1552302 +1 chr1 5702111 5702112 + 5702110 +df2 + Chromosome Start End Strand Distance +0 chr1 1552303 1552304 + 1552302 +1 chr1 5702111 5702112 + 5702110 +Actual + Chromosome Start End Strand Distance +0 chr1 1552303 1552304 + 1552302 +1 chr1 5702111 5702112 + 5702110 + +Expected + Chromosome Start End Strand Distance +0 chr1 1552303 1552304 + 1552302 +1 chr1 5702111 5702112 + 5702110 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=2, step=1) +Expected index +RangeIndex(start=0, stop=2, step=1) +index equal [ True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpm46blve8/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpm46blve8/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 1552303 1552304 + 1552302 +1 chr1 5702111 5702112 + 5702110 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 1552303 | 1552304 | a | 0 | ... | +| chr1 | 5702111 | 5702112 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 1552303 1552304 + 1552302 +1 chr1 5702111 5702112 + 5702110 +df2 + Chromosome Start End Strand Distance +0 chr1 1552303 1552304 + 1552302 +1 chr1 5702111 5702112 + 5702110 +Actual + Chromosome Start End Strand Distance +0 chr1 1552303 1552304 + 1552302 +1 chr1 5702111 5702112 + 5702110 + +Expected + Chromosome Start End Strand Distance +0 chr1 1552303 1552304 + 1552302 +1 chr1 5702111 5702112 + 5702110 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=2, step=1) +Expected index +RangeIndex(start=0, stop=2, step=1) +index equal [ True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmps1b09sds/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmps1b09sds/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp7rtd_rpl/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp7rtd_rpl/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp66dkx219/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp66dkx219/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp0spjf1dd/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp0spjf1dd/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpj6poj9zy/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpj6poj9zy/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpuylfcdrk/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpuylfcdrk/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 81258 86943 + 2009581 +1 chr1 81258 86943 + 4932725 +2 chr1 2338358 2347970 + 236107 +3 chr1 2338358 2347970 + 2671698 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 2338358 | 2347970 | a | 0 | ... | +| chr1 | 2338358 | 2347970 | a | 0 | ... | +| chr1 | 81258 | 86943 | a | 0 | ... | +| chr1 | 81258 | 86943 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 4 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +2 chr1 81258 86943 + 2009581 +3 chr1 81258 86943 + 4932725 +0 chr1 2338358 2347970 + 236107 +1 chr1 2338358 2347970 + 2671698 +df2 + Chromosome Start End Strand Distance +0 chr1 81258 86943 + 2009581 +1 chr1 81258 86943 + 4932725 +2 chr1 2338358 2347970 + 236107 +3 chr1 2338358 2347970 + 2671698 +Actual + Chromosome Start End Strand Distance +0 chr1 81258 86943 + 2009581 +1 chr1 81258 86943 + 4932725 +2 chr1 2338358 2347970 + 236107 +3 chr1 2338358 2347970 + 2671698 + +Expected + Chromosome Start End Strand Distance +0 chr1 81258 86943 + 2009581 +1 chr1 81258 86943 + 4932725 +2 chr1 2338358 2347970 + 236107 +3 chr1 2338358 2347970 + 2671698 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=4, step=1) +Expected index +RangeIndex(start=0, stop=4, step=1) +index equal [ True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmps6rxu5wp/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmps6rxu5wp/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 2096523 2102252 - 2917416 +1 chr1 5019667 5023607 + 2226390 +2 chr1 5019667 5023607 + 2917416 +6 chr1 7249996 7256209 - 2226390 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 5019667 | 5023607 | a | 0 | ... | +| chr1 | 5019667 | 5023607 | a | 0 | ... | +| chr1 | 2096523 | 2102252 | a | 0 | ... | +| chr1 | 7249996 | 7256209 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 4 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +2 chr1 2096523 2102252 - 2917416 +0 chr1 5019667 5023607 + 2226390 +1 chr1 5019667 5023607 + 2917416 +3 chr1 7249996 7256209 - 2226390 +df2 + Chromosome Start End Strand Distance +0 chr1 2096523 2102252 - 2917416 +1 chr1 5019667 5023607 + 2226390 +2 chr1 5019667 5023607 + 2917416 +6 chr1 7249996 7256209 - 2226390 +Actual + Chromosome Start End Strand Distance +0 chr1 2096523 2102252 - 2917416 +1 chr1 5019667 5023607 + 2226390 +2 chr1 5019667 5023607 + 2917416 +3 chr1 7249996 7256209 - 2226390 + +Expected + Chromosome Start End Strand Distance +0 chr1 2096523 2102252 - 2917416 +1 chr1 5019667 5023607 + 2226390 +2 chr1 5019667 5023607 + 2917416 +3 chr1 7249996 7256209 - 2226390 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=4, step=1) +Expected index +RangeIndex(start=0, stop=4, step=1) +index equal [ True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp06zu0pei/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp06zu0pei/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 2096523 2102252 - 2088333 +1 chr1 2096523 2102252 - 2093298 +3 chr1 5019667 5026732 - 5011477 +4 chr1 5019667 5026732 - 5016442 +5 chr1 5019667 5028304 - 5011477 +6 chr1 5019667 5028304 - 5016442 +7 chr1 5019667 5029164 - 5011477 +8 chr1 5019667 5029164 - 5016442 +9 chr1 7249996 7256209 - 7241806 +10 chr1 7249996 7256209 - 7246771 +11 chr10 5019667 5023977 - 5016442 +13 chr8 5019667 5022009 - 5016442 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 5019667 | 5028304 | a | 0 | ... | +| chr1 | 5019667 | 5028304 | a | 0 | ... | +| chr1 | 5019667 | 5029164 | a | 0 | ... | +| chr1 | 5019667 | 5029164 | a | 0 | ... | +| ... | ... | ... | ... | ... | ... | +| chr1 | 7249996 | 7256209 | a | 0 | ... | +| chr1 | 7249996 | 7256209 | a | 0 | ... | +| chr1 | 5019667 | 5026732 | a | 0 | ... | +| chr1 | 5019667 | 5026732 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 12 rows and 12 columns from 3 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +4 chr1 2096523 2102252 - 2088333 +5 chr1 2096523 2102252 - 2093298 +10 chr8 5019667 5022009 - 5016442 +11 chr10 5019667 5023977 - 5016442 +8 chr1 5019667 5026732 - 5011477 +9 chr1 5019667 5026732 - 5016442 +0 chr1 5019667 5028304 - 5011477 +1 chr1 5019667 5028304 - 5016442 +2 chr1 5019667 5029164 - 5011477 +3 chr1 5019667 5029164 - 5016442 +6 chr1 7249996 7256209 - 7241806 +7 chr1 7249996 7256209 - 7246771 +df2 + Chromosome Start End Strand Distance +0 chr1 2096523 2102252 - 2088333 +1 chr1 2096523 2102252 - 2093298 +13 chr8 5019667 5022009 - 5016442 +11 chr10 5019667 5023977 - 5016442 +3 chr1 5019667 5026732 - 5011477 +4 chr1 5019667 5026732 - 5016442 +5 chr1 5019667 5028304 - 5011477 +6 chr1 5019667 5028304 - 5016442 +7 chr1 5019667 5029164 - 5011477 +8 chr1 5019667 5029164 - 5016442 +9 chr1 7249996 7256209 - 7241806 +10 chr1 7249996 7256209 - 7246771 +Actual + Chromosome Start End Strand Distance +0 chr1 2096523 2102252 - 2088333 +1 chr1 2096523 2102252 - 2093298 +2 chr1 5019667 5026732 - 5011477 +3 chr1 5019667 5026732 - 5016442 +4 chr1 5019667 5028304 - 5011477 +5 chr1 5019667 5028304 - 5016442 +6 chr1 5019667 5029164 - 5011477 +7 chr1 5019667 5029164 - 5016442 +8 chr1 7249996 7256209 - 7241806 +9 chr1 7249996 7256209 - 7246771 +10 chr10 5019667 5023977 - 5016442 +11 chr8 5019667 5022009 - 5016442 + +Expected + Chromosome Start End Strand Distance +0 chr1 2096523 2102252 - 2088333 +1 chr1 2096523 2102252 - 2093298 +2 chr1 5019667 5026732 - 5011477 +3 chr1 5019667 5026732 - 5016442 +4 chr1 5019667 5028304 - 5011477 +5 chr1 5019667 5028304 - 5016442 +6 chr1 5019667 5029164 - 5011477 +7 chr1 5019667 5029164 - 5016442 +8 chr1 7249996 7256209 - 7241806 +9 chr1 7249996 7256209 - 7246771 +10 chr10 5019667 5023977 - 5016442 +11 chr8 5019667 5022009 - 5016442 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=12, step=1) +Expected index +RangeIndex(start=0, stop=12, step=1) +index equal [ True True True True True True True True True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpbhtyzvbw/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpbhtyzvbw/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 2096523 2102252 - 2093298 +1 chr1 2096523 2102252 - 2093706 +3 chr1 5019667 5026732 - 5016442 +4 chr1 5019667 5026732 - 5016850 +5 chr1 5019667 5028304 - 5016442 +6 chr1 5019667 5028304 - 5016850 +7 chr1 5019667 5029164 - 5016442 +8 chr1 5019667 5029164 - 5016850 +9 chr1 7249996 7256209 - 7246771 +10 chr1 7249996 7256209 - 7247179 +11 chr10 5019667 5023977 - 5016442 +13 chr8 5019667 5022009 - 5011477 +14 chr8 5019667 5022009 - 5016442 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 5019667 | 5028304 | a | 0 | ... | +| chr1 | 5019667 | 5028304 | a | 0 | ... | +| chr1 | 5019667 | 5029164 | a | 0 | ... | +| chr1 | 5019667 | 5029164 | a | 0 | ... | +| ... | ... | ... | ... | ... | ... | +| chr1 | 7249996 | 7256209 | a | 0 | ... | +| chr1 | 7249996 | 7256209 | a | 0 | ... | +| chr1 | 5019667 | 5026732 | a | 0 | ... | +| chr1 | 5019667 | 5026732 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 13 rows and 12 columns from 3 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +4 chr1 2096523 2102252 - 2093298 +5 chr1 2096523 2102252 - 2093706 +10 chr8 5019667 5022009 - 5011477 +11 chr8 5019667 5022009 - 5016442 +12 chr10 5019667 5023977 - 5016442 +8 chr1 5019667 5026732 - 5016442 +9 chr1 5019667 5026732 - 5016850 +0 chr1 5019667 5028304 - 5016442 +1 chr1 5019667 5028304 - 5016850 +2 chr1 5019667 5029164 - 5016442 +3 chr1 5019667 5029164 - 5016850 +6 chr1 7249996 7256209 - 7246771 +7 chr1 7249996 7256209 - 7247179 +df2 + Chromosome Start End Strand Distance +0 chr1 2096523 2102252 - 2093298 +1 chr1 2096523 2102252 - 2093706 +13 chr8 5019667 5022009 - 5011477 +14 chr8 5019667 5022009 - 5016442 +11 chr10 5019667 5023977 - 5016442 +3 chr1 5019667 5026732 - 5016442 +4 chr1 5019667 5026732 - 5016850 +5 chr1 5019667 5028304 - 5016442 +6 chr1 5019667 5028304 - 5016850 +7 chr1 5019667 5029164 - 5016442 +8 chr1 5019667 5029164 - 5016850 +9 chr1 7249996 7256209 - 7246771 +10 chr1 7249996 7256209 - 7247179 +Actual + Chromosome Start End Strand Distance +0 chr1 2096523 2102252 - 2093298 +1 chr1 2096523 2102252 - 2093706 +2 chr1 5019667 5026732 - 5016442 +3 chr1 5019667 5026732 - 5016850 +4 chr1 5019667 5028304 - 5016442 +5 chr1 5019667 5028304 - 5016850 +6 chr1 5019667 5029164 - 5016442 +7 chr1 5019667 5029164 - 5016850 +8 chr1 7249996 7256209 - 7246771 +9 chr1 7249996 7256209 - 7247179 +10 chr10 5019667 5023977 - 5016442 +11 chr8 5019667 5022009 - 5011477 +12 chr8 5019667 5022009 - 5016442 + +Expected + Chromosome Start End Strand Distance +0 chr1 2096523 2102252 - 2093298 +1 chr1 2096523 2102252 - 2093706 +2 chr1 5019667 5026732 - 5016442 +3 chr1 5019667 5026732 - 5016850 +4 chr1 5019667 5028304 - 5016442 +5 chr1 5019667 5028304 - 5016850 +6 chr1 5019667 5029164 - 5016442 +7 chr1 5019667 5029164 - 5016850 +8 chr1 7249996 7256209 - 7246771 +9 chr1 7249996 7256209 - 7247179 +10 chr10 5019667 5023977 - 5016442 +11 chr8 5019667 5022009 - 5011477 +12 chr8 5019667 5022009 - 5016442 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=13, step=1) +Expected index +RangeIndex(start=0, stop=13, step=1) +index equal [ True True True True True True True True True True True True + True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpkhszylor/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpkhszylor/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 2096523 2102252 - 2093298 +1 chr1 2096523 2102252 - 2093706 +3 chr1 5019667 5026732 - 5016442 +4 chr1 5019667 5026732 - 5016850 +5 chr1 5019667 5028304 - 5016442 +6 chr1 5019667 5028304 - 5016850 +7 chr1 5019667 5028771 - 5016442 +8 chr1 5019667 5028771 - 5016850 +9 chr1 5019667 5029164 - 5016442 +10 chr1 5019667 5029164 - 5016850 +11 chr1 7249996 7256209 - 7246771 +12 chr1 7249996 7256209 - 7247179 +13 chr10 5019667 5023977 - 5016442 +14 chr8 5019667 5022009 - 5011477 +15 chr8 5019667 5022009 - 5016442 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 5019667 | 5028771 | a | 0 | ... | +| chr1 | 5019667 | 5028771 | a | 0 | ... | +| chr1 | 5019667 | 5028304 | a | 0 | ... | +| chr1 | 5019667 | 5028304 | a | 0 | ... | +| ... | ... | ... | ... | ... | ... | +| chr1 | 7249996 | 7256209 | a | 0 | ... | +| chr1 | 7249996 | 7256209 | a | 0 | ... | +| chr1 | 5019667 | 5026732 | a | 0 | ... | +| chr1 | 5019667 | 5026732 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 15 rows and 12 columns from 3 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +6 chr1 2096523 2102252 - 2093298 +7 chr1 2096523 2102252 - 2093706 +12 chr8 5019667 5022009 - 5011477 +13 chr8 5019667 5022009 - 5016442 +14 chr10 5019667 5023977 - 5016442 +10 chr1 5019667 5026732 - 5016442 +11 chr1 5019667 5026732 - 5016850 +2 chr1 5019667 5028304 - 5016442 +3 chr1 5019667 5028304 - 5016850 +0 chr1 5019667 5028771 - 5016442 +1 chr1 5019667 5028771 - 5016850 +4 chr1 5019667 5029164 - 5016442 +5 chr1 5019667 5029164 - 5016850 +8 chr1 7249996 7256209 - 7246771 +9 chr1 7249996 7256209 - 7247179 +df2 + Chromosome Start End Strand Distance +0 chr1 2096523 2102252 - 2093298 +1 chr1 2096523 2102252 - 2093706 +14 chr8 5019667 5022009 - 5011477 +15 chr8 5019667 5022009 - 5016442 +13 chr10 5019667 5023977 - 5016442 +3 chr1 5019667 5026732 - 5016442 +4 chr1 5019667 5026732 - 5016850 +5 chr1 5019667 5028304 - 5016442 +6 chr1 5019667 5028304 - 5016850 +7 chr1 5019667 5028771 - 5016442 +8 chr1 5019667 5028771 - 5016850 +9 chr1 5019667 5029164 - 5016442 +10 chr1 5019667 5029164 - 5016850 +11 chr1 7249996 7256209 - 7246771 +12 chr1 7249996 7256209 - 7247179 +Actual + Chromosome Start End Strand Distance +0 chr1 2096523 2102252 - 2093298 +1 chr1 2096523 2102252 - 2093706 +2 chr1 5019667 5026732 - 5016442 +3 chr1 5019667 5026732 - 5016850 +4 chr1 5019667 5028304 - 5016442 +5 chr1 5019667 5028304 - 5016850 +6 chr1 5019667 5028771 - 5016442 +7 chr1 5019667 5028771 - 5016850 +8 chr1 5019667 5029164 - 5016442 +9 chr1 5019667 5029164 - 5016850 +10 chr1 7249996 7256209 - 7246771 +11 chr1 7249996 7256209 - 7247179 +12 chr10 5019667 5023977 - 5016442 +13 chr8 5019667 5022009 - 5011477 +14 chr8 5019667 5022009 - 5016442 + +Expected + Chromosome Start End Strand Distance +0 chr1 2096523 2102252 - 2093298 +1 chr1 2096523 2102252 - 2093706 +2 chr1 5019667 5026732 - 5016442 +3 chr1 5019667 5026732 - 5016850 +4 chr1 5019667 5028304 - 5016442 +5 chr1 5019667 5028304 - 5016850 +6 chr1 5019667 5028771 - 5016442 +7 chr1 5019667 5028771 - 5016850 +8 chr1 5019667 5029164 - 5016442 +9 chr1 5019667 5029164 - 5016850 +10 chr1 7249996 7256209 - 7246771 +11 chr1 7249996 7256209 - 7247179 +12 chr10 5019667 5023977 - 5016442 +13 chr8 5019667 5022009 - 5011477 +14 chr8 5019667 5022009 - 5016442 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=15, step=1) +Expected index +RangeIndex(start=0, stop=15, step=1) +index equal [ True True True True True True True True True True True True + True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpuvq1t56y/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpuvq1t56y/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 2096523 2102252 - 2917416 +1 chr1 5019667 5023607 + 2226390 +2 chr1 5019667 5023607 + 2917416 +7 chr1 7249996 7256209 - 2226390 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 5019667 | 5023607 | a | 0 | ... | +| chr1 | 5019667 | 5023607 | a | 0 | ... | +| chr1 | 2096523 | 2102252 | a | 0 | ... | +| chr1 | 7249996 | 7256209 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 4 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +2 chr1 2096523 2102252 - 2917416 +0 chr1 5019667 5023607 + 2226390 +1 chr1 5019667 5023607 + 2917416 +3 chr1 7249996 7256209 - 2226390 +df2 + Chromosome Start End Strand Distance +0 chr1 2096523 2102252 - 2917416 +1 chr1 5019667 5023607 + 2226390 +2 chr1 5019667 5023607 + 2917416 +7 chr1 7249996 7256209 - 2226390 +Actual + Chromosome Start End Strand Distance +0 chr1 2096523 2102252 - 2917416 +1 chr1 5019667 5023607 + 2226390 +2 chr1 5019667 5023607 + 2917416 +3 chr1 7249996 7256209 - 2226390 + +Expected + Chromosome Start End Strand Distance +0 chr1 2096523 2102252 - 2917416 +1 chr1 5019667 5023607 + 2226390 +2 chr1 5019667 5023607 + 2917416 +3 chr1 7249996 7256209 - 2226390 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=4, step=1) +Expected index +RangeIndex(start=0, stop=4, step=1) +index equal [ True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpt9els5kh/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpt9els5kh/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpxv2s4j13/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpxv2s4j13/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpv0ma7rs1/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpv0ma7rs1/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpysm_o3ig/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpysm_o3ig/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 5744319 5747346 + 851652 +1 chr1 5744319 5747346 + 2277645 +2 chr1 9713554 9716581 - 531864 +3 chr1 9713554 9716581 - 793612 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 5744319 | 5747346 | a | 0 | ... | +| chr1 | 5744319 | 5747346 | a | 0 | ... | +| chr1 | 9713554 | 9716581 | a | 0 | ... | +| chr1 | 9713554 | 9716581 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 4 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 5744319 5747346 + 851652 +1 chr1 5744319 5747346 + 2277645 +2 chr1 9713554 9716581 - 531864 +3 chr1 9713554 9716581 - 793612 +df2 + Chromosome Start End Strand Distance +0 chr1 5744319 5747346 + 851652 +1 chr1 5744319 5747346 + 2277645 +2 chr1 9713554 9716581 - 531864 +3 chr1 9713554 9716581 - 793612 +Actual + Chromosome Start End Strand Distance +0 chr1 5744319 5747346 + 851652 +1 chr1 5744319 5747346 + 2277645 +2 chr1 9713554 9716581 - 531864 +3 chr1 9713554 9716581 - 793612 + +Expected + Chromosome Start End Strand Distance +0 chr1 5744319 5747346 + 851652 +1 chr1 5744319 5747346 + 2277645 +2 chr1 9713554 9716581 - 531864 +3 chr1 9713554 9716581 - 793612 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=4, step=1) +Expected index +RangeIndex(start=0, stop=4, step=1) +index equal [ True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpyuf1_sov/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpyuf1_sov/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 5744319 5747346 + 851652 +1 chr1 5744319 5747346 + 2277645 +2 chr1 9713554 9716581 - 531864 +3 chr1 9713554 9716581 - 793612 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 5744319 | 5747346 | a | 0 | ... | +| chr1 | 5744319 | 5747346 | a | 0 | ... | +| chr1 | 9713554 | 9716581 | a | 0 | ... | +| chr1 | 9713554 | 9716581 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 4 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 5744319 5747346 + 851652 +1 chr1 5744319 5747346 + 2277645 +2 chr1 9713554 9716581 - 531864 +3 chr1 9713554 9716581 - 793612 +df2 + Chromosome Start End Strand Distance +0 chr1 5744319 5747346 + 851652 +1 chr1 5744319 5747346 + 2277645 +2 chr1 9713554 9716581 - 531864 +3 chr1 9713554 9716581 - 793612 +Actual + Chromosome Start End Strand Distance +0 chr1 5744319 5747346 + 851652 +1 chr1 5744319 5747346 + 2277645 +2 chr1 9713554 9716581 - 531864 +3 chr1 9713554 9716581 - 793612 + +Expected + Chromosome Start End Strand Distance +0 chr1 5744319 5747346 + 851652 +1 chr1 5744319 5747346 + 2277645 +2 chr1 9713554 9716581 - 531864 +3 chr1 9713554 9716581 - 793612 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=4, step=1) +Expected index +RangeIndex(start=0, stop=4, step=1) +index equal [ True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpjhykb5sd/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpjhykb5sd/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 5744319 5747346 + 3966209 +1 chr1 9713554 9716581 - 3966209 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 5744319 | 5747346 | a | 0 | ... | +| chr1 | 9713554 | 9716581 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 5744319 5747346 + 3966209 +1 chr1 9713554 9716581 - 3966209 +df2 + Chromosome Start End Strand Distance +0 chr1 5744319 5747346 + 3966209 +1 chr1 9713554 9716581 - 3966209 +Actual + Chromosome Start End Strand Distance +0 chr1 5744319 5747346 + 3966209 +1 chr1 9713554 9716581 - 3966209 + +Expected + Chromosome Start End Strand Distance +0 chr1 5744319 5747346 + 3966209 +1 chr1 9713554 9716581 - 3966209 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=2, step=1) +Expected index +RangeIndex(start=0, stop=2, step=1) +index equal [ True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpirqskpie/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpirqskpie/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpbe4obeds/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpbe4obeds/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp66ruti56/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp66ruti56/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpnu42rttp/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpnu42rttp/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp2ycl6bcw/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp2ycl6bcw/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpqxglyooa/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpqxglyooa/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmposbo6s26/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmposbo6s26/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpgjp7580c/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpgjp7580c/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpc1jq2efn/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpc1jq2efn/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmphrvfpbs5/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmphrvfpbs5/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp7zo9o30s/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp7zo9o30s/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +1 chr1 5179953 5180534 + 2556501 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 5179953 | 5180534 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 5179953 5180534 + 2556501 +df2 + Chromosome Start End Strand Distance +1 chr1 5179953 5180534 + 2556501 +Actual + Chromosome Start End Strand Distance +0 chr1 5179953 5180534 + 2556501 + +Expected + Chromosome Start End Strand Distance +0 chr1 5179953 5180534 + 2556501 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=1, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +index equal [ True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmphs2zta9u/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmphs2zta9u/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 1009526 1013359 + 1610094 +1 chr1 5179953 5180534 + 2556501 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 1009526 | 1013359 | a | 0 | ... | +| chr1 | 5179953 | 5180534 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 1009526 1013359 + 1610094 +1 chr1 5179953 5180534 + 2556501 +df2 + Chromosome Start End Strand Distance +0 chr1 1009526 1013359 + 1610094 +1 chr1 5179953 5180534 + 2556501 +Actual + Chromosome Start End Strand Distance +0 chr1 1009526 1013359 + 1610094 +1 chr1 5179953 5180534 + 2556501 + +Expected + Chromosome Start End Strand Distance +0 chr1 1009526 1013359 + 1610094 +1 chr1 5179953 5180534 + 2556501 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=2, step=1) +Expected index +RangeIndex(start=0, stop=2, step=1) +index equal [ True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp6g8or21q/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp6g8or21q/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 3851 7684 + 2615769 +1 chr1 5179953 5180534 + 2556501 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 3851 | 7684 | a | 0 | ... | +| chr1 | 5179953 | 5180534 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 3851 7684 + 2615769 +1 chr1 5179953 5180534 + 2556501 +df2 + Chromosome Start End Strand Distance +0 chr1 3851 7684 + 2615769 +1 chr1 5179953 5180534 + 2556501 +Actual + Chromosome Start End Strand Distance +0 chr1 3851 7684 + 2615769 +1 chr1 5179953 5180534 + 2556501 + +Expected + Chromosome Start End Strand Distance +0 chr1 3851 7684 + 2615769 +1 chr1 5179953 5180534 + 2556501 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=2, step=1) +Expected index +RangeIndex(start=0, stop=2, step=1) +index equal [ True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmplessh3cj/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmplessh3cj/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 3851 7684 + 2615769 +1 chr1 5179953 5180534 + 2556501 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 3851 | 7684 | a | 0 | ... | +| chr1 | 5179953 | 5180534 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 3851 7684 + 2615769 +1 chr1 5179953 5180534 + 2556501 +df2 + Chromosome Start End Strand Distance +0 chr1 3851 7684 + 2615769 +1 chr1 5179953 5180534 + 2556501 +Actual + Chromosome Start End Strand Distance +0 chr1 3851 7684 + 2615769 +1 chr1 5179953 5180534 + 2556501 + +Expected + Chromosome Start End Strand Distance +0 chr1 3851 7684 + 2615769 +1 chr1 5179953 5180534 + 2556501 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=2, step=1) +Expected index +RangeIndex(start=0, stop=2, step=1) +index equal [ True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpablwmorg/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpablwmorg/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpa5bgh5hy/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpa5bgh5hy/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpclv6wwgl/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpclv6wwgl/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpq41y6ji2/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpq41y6ji2/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpndii4x9o/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpndii4x9o/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmphcm65gqd/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmphcm65gqd/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpb356w51y/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpb356w51y/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpc4502t5k/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpc4502t5k/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr2 4935978 4944544 - 1222362 +1 chr2 4935978 4944544 - 4935976 +2 chr2 5374562 5383128 - 438584 +3 chr2 5374562 5383128 - 783778 +4 chr2 5826484 5834754 - 332152 +5 chr2 5826484 5834754 - 890506 +6 chr2 6166905 6175471 - 1230927 +7 chr2 6166905 6175471 - 6166903 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr2 | 5374562 | 5383128 | a | 0 | ... | +| chr2 | 5374562 | 5383128 | a | 0 | ... | +| chr2 | 5826484 | 5834754 | a | 0 | ... | +| chr2 | 5826484 | 5834754 | a | 0 | ... | +| chr2 | 6166905 | 6175471 | a | 0 | ... | +| chr2 | 6166905 | 6175471 | a | 0 | ... | +| chr2 | 4935978 | 4944544 | a | 0 | ... | +| chr2 | 4935978 | 4944544 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 8 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +6 chr2 4935978 4944544 - 1222362 +7 chr2 4935978 4944544 - 4935976 +0 chr2 5374562 5383128 - 438584 +1 chr2 5374562 5383128 - 783778 +2 chr2 5826484 5834754 - 332152 +3 chr2 5826484 5834754 - 890506 +4 chr2 6166905 6175471 - 1230927 +5 chr2 6166905 6175471 - 6166903 +df2 + Chromosome Start End Strand Distance +0 chr2 4935978 4944544 - 1222362 +1 chr2 4935978 4944544 - 4935976 +2 chr2 5374562 5383128 - 438584 +3 chr2 5374562 5383128 - 783778 +4 chr2 5826484 5834754 - 332152 +5 chr2 5826484 5834754 - 890506 +6 chr2 6166905 6175471 - 1230927 +7 chr2 6166905 6175471 - 6166903 +Actual + Chromosome Start End Strand Distance +0 chr2 4935978 4944544 - 1222362 +1 chr2 4935978 4944544 - 4935976 +2 chr2 5374562 5383128 - 438584 +3 chr2 5374562 5383128 - 783778 +4 chr2 5826484 5834754 - 332152 +5 chr2 5826484 5834754 - 890506 +6 chr2 6166905 6175471 - 1230927 +7 chr2 6166905 6175471 - 6166903 + +Expected + Chromosome Start End Strand Distance +0 chr2 4935978 4944544 - 1222362 +1 chr2 4935978 4944544 - 4935976 +2 chr2 5374562 5383128 - 438584 +3 chr2 5374562 5383128 - 783778 +4 chr2 5826484 5834754 - 332152 +5 chr2 5826484 5834754 - 890506 +6 chr2 6166905 6175471 - 1230927 +7 chr2 6166905 6175471 - 6166903 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=8, step=1) +Expected index +RangeIndex(start=0, stop=8, step=1) +index equal [ True True True True True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp85k1ezt1/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp85k1ezt1/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 4859534 4869534 - 4149484 +1 chr1 8928222 8937104 - 81914 +2 chr16 7403791 7413791 - 6125006 +3 chr3 1 10001 - 5843165 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 4859534 | 4869534 | a | 0 | ... | +| chr1 | 8928222 | 8937104 | a | 0 | ... | +| chr3 | 1 | 10001 | a | 0 | ... | +| chr16 | 7403791 | 7413791 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 4 rows and 12 columns from 3 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +2 chr3 1 10001 - 5843165 +0 chr1 4859534 4869534 - 4149484 +3 chr16 7403791 7413791 - 6125006 +1 chr1 8928222 8937104 - 81914 +df2 + Chromosome Start End Strand Distance +3 chr3 1 10001 - 5843165 +0 chr1 4859534 4869534 - 4149484 +2 chr16 7403791 7413791 - 6125006 +1 chr1 8928222 8937104 - 81914 +Actual + Chromosome Start End Strand Distance +0 chr1 4859534 4869534 - 4149484 +1 chr1 8928222 8937104 - 81914 +2 chr16 7403791 7413791 - 6125006 +3 chr3 1 10001 - 5843165 + +Expected + Chromosome Start End Strand Distance +0 chr1 4859534 4869534 - 4149484 +1 chr1 8928222 8937104 - 81914 +2 chr16 7403791 7413791 - 6125006 +3 chr3 1 10001 - 5843165 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=4, step=1) +Expected index +RangeIndex(start=0, stop=4, step=1) +index equal [ True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp49gnod5i/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp49gnod5i/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 4859534 4859535 + 4859533 +1 chr1 4859534 4859535 + 4859533 +2 chr1 4859534 4859535 + 4859533 +3 chr1 4859534 4859535 + 4859533 +4 chr1 4859534 4859535 + 4859533 +5 chr1 4859534 4859535 + 4859533 +6 chr1 4859534 4859535 + 4859533 +7 chr1 4859534 4859535 + 4859533 +8 chr1 4859534 4861642 + 4859533 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 4859534 | 4859535 | a | 0 | ... | +| chr1 | 4859534 | 4861642 | a | 0 | ... | +| chr1 | 4859534 | 4859535 | a | 0 | ... | +| chr1 | 4859534 | 4859535 | a | 0 | ... | +| ... | ... | ... | ... | ... | ... | +| chr1 | 4859534 | 4859535 | a | 0 | ... | +| chr1 | 4859534 | 4859535 | a | 0 | ... | +| chr1 | 4859534 | 4859535 | a | 0 | ... | +| chr1 | 4859534 | 4859535 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 9 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 4859534 4859535 + 4859533 +2 chr1 4859534 4859535 + 4859533 +3 chr1 4859534 4859535 + 4859533 +4 chr1 4859534 4859535 + 4859533 +5 chr1 4859534 4859535 + 4859533 +6 chr1 4859534 4859535 + 4859533 +7 chr1 4859534 4859535 + 4859533 +8 chr1 4859534 4859535 + 4859533 +1 chr1 4859534 4861642 + 4859533 +df2 + Chromosome Start End Strand Distance +0 chr1 4859534 4859535 + 4859533 +1 chr1 4859534 4859535 + 4859533 +2 chr1 4859534 4859535 + 4859533 +3 chr1 4859534 4859535 + 4859533 +4 chr1 4859534 4859535 + 4859533 +5 chr1 4859534 4859535 + 4859533 +6 chr1 4859534 4859535 + 4859533 +7 chr1 4859534 4859535 + 4859533 +8 chr1 4859534 4861642 + 4859533 +Actual + Chromosome Start End Strand Distance +0 chr1 4859534 4859535 + 4859533 +1 chr1 4859534 4859535 + 4859533 +2 chr1 4859534 4859535 + 4859533 +3 chr1 4859534 4859535 + 4859533 +4 chr1 4859534 4859535 + 4859533 +5 chr1 4859534 4859535 + 4859533 +6 chr1 4859534 4859535 + 4859533 +7 chr1 4859534 4859535 + 4859533 +8 chr1 4859534 4861642 + 4859533 + +Expected + Chromosome Start End Strand Distance +0 chr1 4859534 4859535 + 4859533 +1 chr1 4859534 4859535 + 4859533 +2 chr1 4859534 4859535 + 4859533 +3 chr1 4859534 4859535 + 4859533 +4 chr1 4859534 4859535 + 4859533 +5 chr1 4859534 4859535 + 4859533 +6 chr1 4859534 4859535 + 4859533 +7 chr1 4859534 4859535 + 4859533 +8 chr1 4859534 4861642 + 4859533 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=9, step=1) +Expected index +RangeIndex(start=0, stop=9, step=1) +index equal [ True True True True True True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp81ki6492/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp81ki6492/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 4859534 4859535 + 4859533 +1 chr1 4859534 4859535 + 4859533 +2 chr1 4859534 4859535 + 4859533 +3 chr1 4859534 4859535 + 4859533 +4 chr1 4859534 4859535 + 4859533 +5 chr1 4859534 4859535 + 4859533 +6 chr1 4859534 4859535 + 4859533 +7 chr1 4859534 4859535 + 4859533 +8 chr1 4859534 4861642 + 4859533 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 4859534 | 4859535 | a | 0 | ... | +| chr1 | 4859534 | 4861642 | a | 0 | ... | +| chr1 | 4859534 | 4859535 | a | 0 | ... | +| chr1 | 4859534 | 4859535 | a | 0 | ... | +| ... | ... | ... | ... | ... | ... | +| chr1 | 4859534 | 4859535 | a | 0 | ... | +| chr1 | 4859534 | 4859535 | a | 0 | ... | +| chr1 | 4859534 | 4859535 | a | 0 | ... | +| chr1 | 4859534 | 4859535 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 9 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 4859534 4859535 + 4859533 +2 chr1 4859534 4859535 + 4859533 +3 chr1 4859534 4859535 + 4859533 +4 chr1 4859534 4859535 + 4859533 +5 chr1 4859534 4859535 + 4859533 +6 chr1 4859534 4859535 + 4859533 +7 chr1 4859534 4859535 + 4859533 +8 chr1 4859534 4859535 + 4859533 +1 chr1 4859534 4861642 + 4859533 +df2 + Chromosome Start End Strand Distance +0 chr1 4859534 4859535 + 4859533 +1 chr1 4859534 4859535 + 4859533 +2 chr1 4859534 4859535 + 4859533 +3 chr1 4859534 4859535 + 4859533 +4 chr1 4859534 4859535 + 4859533 +5 chr1 4859534 4859535 + 4859533 +6 chr1 4859534 4859535 + 4859533 +7 chr1 4859534 4859535 + 4859533 +8 chr1 4859534 4861642 + 4859533 +Actual + Chromosome Start End Strand Distance +0 chr1 4859534 4859535 + 4859533 +1 chr1 4859534 4859535 + 4859533 +2 chr1 4859534 4859535 + 4859533 +3 chr1 4859534 4859535 + 4859533 +4 chr1 4859534 4859535 + 4859533 +5 chr1 4859534 4859535 + 4859533 +6 chr1 4859534 4859535 + 4859533 +7 chr1 4859534 4859535 + 4859533 +8 chr1 4859534 4861642 + 4859533 + +Expected + Chromosome Start End Strand Distance +0 chr1 4859534 4859535 + 4859533 +1 chr1 4859534 4859535 + 4859533 +2 chr1 4859534 4859535 + 4859533 +3 chr1 4859534 4859535 + 4859533 +4 chr1 4859534 4859535 + 4859533 +5 chr1 4859534 4859535 + 4859533 +6 chr1 4859534 4859535 + 4859533 +7 chr1 4859534 4859535 + 4859533 +8 chr1 4859534 4861642 + 4859533 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=9, step=1) +Expected index +RangeIndex(start=0, stop=9, step=1) +index equal [ True True True True True True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpu2x3qayq/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpu2x3qayq/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 4859534 4859535 + 4859533 +1 chr1 4859534 4859535 + 4859533 +2 chr1 4859534 4859535 + 4859533 +3 chr1 4859534 4859535 + 4859533 +4 chr1 4859534 4859535 + 4859533 +5 chr1 4859534 4859535 + 4859533 +6 chr1 4859534 4859535 + 4859533 +7 chr1 4859534 4859535 + 4859533 +8 chr1 4859534 4861642 + 4859533 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 4859534 | 4859535 | a | 0 | ... | +| chr1 | 4859534 | 4861642 | a | 0 | ... | +| chr1 | 4859534 | 4859535 | a | 0 | ... | +| chr1 | 4859534 | 4859535 | a | 0 | ... | +| ... | ... | ... | ... | ... | ... | +| chr1 | 4859534 | 4859535 | a | 0 | ... | +| chr1 | 4859534 | 4859535 | a | 0 | ... | +| chr1 | 4859534 | 4859535 | a | 0 | ... | +| chr1 | 4859534 | 4859535 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 9 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 4859534 4859535 + 4859533 +2 chr1 4859534 4859535 + 4859533 +3 chr1 4859534 4859535 + 4859533 +4 chr1 4859534 4859535 + 4859533 +5 chr1 4859534 4859535 + 4859533 +6 chr1 4859534 4859535 + 4859533 +7 chr1 4859534 4859535 + 4859533 +8 chr1 4859534 4859535 + 4859533 +1 chr1 4859534 4861642 + 4859533 +df2 + Chromosome Start End Strand Distance +0 chr1 4859534 4859535 + 4859533 +1 chr1 4859534 4859535 + 4859533 +2 chr1 4859534 4859535 + 4859533 +3 chr1 4859534 4859535 + 4859533 +4 chr1 4859534 4859535 + 4859533 +5 chr1 4859534 4859535 + 4859533 +6 chr1 4859534 4859535 + 4859533 +7 chr1 4859534 4859535 + 4859533 +8 chr1 4859534 4861642 + 4859533 +Actual + Chromosome Start End Strand Distance +0 chr1 4859534 4859535 + 4859533 +1 chr1 4859534 4859535 + 4859533 +2 chr1 4859534 4859535 + 4859533 +3 chr1 4859534 4859535 + 4859533 +4 chr1 4859534 4859535 + 4859533 +5 chr1 4859534 4859535 + 4859533 +6 chr1 4859534 4859535 + 4859533 +7 chr1 4859534 4859535 + 4859533 +8 chr1 4859534 4861642 + 4859533 + +Expected + Chromosome Start End Strand Distance +0 chr1 4859534 4859535 + 4859533 +1 chr1 4859534 4859535 + 4859533 +2 chr1 4859534 4859535 + 4859533 +3 chr1 4859534 4859535 + 4859533 +4 chr1 4859534 4859535 + 4859533 +5 chr1 4859534 4859535 + 4859533 +6 chr1 4859534 4859535 + 4859533 +7 chr1 4859534 4859535 + 4859533 +8 chr1 4859534 4861642 + 4859533 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=9, step=1) +Expected index +RangeIndex(start=0, stop=9, step=1) +index equal [ True True True True True True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpsebfcndi/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpsebfcndi/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 4859534 4859535 + 4859533 +1 chr1 4859534 4859535 + 4859533 +2 chr1 4859534 4859535 + 4859533 +3 chr1 4859534 4859535 + 4859533 +4 chr1 4859534 4859535 + 4859533 +5 chr1 4859534 4859535 + 4859533 +6 chr1 4859534 4859535 + 4859533 +7 chr1 4859534 4859535 + 4859533 +8 chr1 4859534 4861642 + 4859533 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 4859534 | 4859535 | a | 0 | ... | +| chr1 | 4859534 | 4861642 | a | 0 | ... | +| chr1 | 4859534 | 4859535 | a | 0 | ... | +| chr1 | 4859534 | 4859535 | a | 0 | ... | +| ... | ... | ... | ... | ... | ... | +| chr1 | 4859534 | 4859535 | a | 0 | ... | +| chr1 | 4859534 | 4859535 | a | 0 | ... | +| chr1 | 4859534 | 4859535 | a | 0 | ... | +| chr1 | 4859534 | 4859535 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 9 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 4859534 4859535 + 4859533 +2 chr1 4859534 4859535 + 4859533 +3 chr1 4859534 4859535 + 4859533 +4 chr1 4859534 4859535 + 4859533 +5 chr1 4859534 4859535 + 4859533 +6 chr1 4859534 4859535 + 4859533 +7 chr1 4859534 4859535 + 4859533 +8 chr1 4859534 4859535 + 4859533 +1 chr1 4859534 4861642 + 4859533 +df2 + Chromosome Start End Strand Distance +0 chr1 4859534 4859535 + 4859533 +1 chr1 4859534 4859535 + 4859533 +2 chr1 4859534 4859535 + 4859533 +3 chr1 4859534 4859535 + 4859533 +4 chr1 4859534 4859535 + 4859533 +5 chr1 4859534 4859535 + 4859533 +6 chr1 4859534 4859535 + 4859533 +7 chr1 4859534 4859535 + 4859533 +8 chr1 4859534 4861642 + 4859533 +Actual + Chromosome Start End Strand Distance +0 chr1 4859534 4859535 + 4859533 +1 chr1 4859534 4859535 + 4859533 +2 chr1 4859534 4859535 + 4859533 +3 chr1 4859534 4859535 + 4859533 +4 chr1 4859534 4859535 + 4859533 +5 chr1 4859534 4859535 + 4859533 +6 chr1 4859534 4859535 + 4859533 +7 chr1 4859534 4859535 + 4859533 +8 chr1 4859534 4861642 + 4859533 + +Expected + Chromosome Start End Strand Distance +0 chr1 4859534 4859535 + 4859533 +1 chr1 4859534 4859535 + 4859533 +2 chr1 4859534 4859535 + 4859533 +3 chr1 4859534 4859535 + 4859533 +4 chr1 4859534 4859535 + 4859533 +5 chr1 4859534 4859535 + 4859533 +6 chr1 4859534 4859535 + 4859533 +7 chr1 4859534 4859535 + 4859533 +8 chr1 4859534 4861642 + 4859533 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=9, step=1) +Expected index +RangeIndex(start=0, stop=9, step=1) +index equal [ True True True True True True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpnq85czhy/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpnq85czhy/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 4859534 4859535 + 4859533 +1 chr1 4859534 4859535 + 4859533 +2 chr1 4859534 4859535 + 4859533 +3 chr1 4859534 4859535 + 4859533 +4 chr1 4859534 4859535 + 4859533 +5 chr1 4859534 4859535 + 4859533 +6 chr1 4859534 4859535 + 4859533 +7 chr1 4859534 4859535 + 4859533 +8 chr1 4859534 4861642 + 4859533 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 4859534 | 4859535 | a | 0 | ... | +| chr1 | 4859534 | 4861642 | a | 0 | ... | +| chr1 | 4859534 | 4859535 | a | 0 | ... | +| chr1 | 4859534 | 4859535 | a | 0 | ... | +| ... | ... | ... | ... | ... | ... | +| chr1 | 4859534 | 4859535 | a | 0 | ... | +| chr1 | 4859534 | 4859535 | a | 0 | ... | +| chr1 | 4859534 | 4859535 | a | 0 | ... | +| chr1 | 4859534 | 4859535 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 9 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 4859534 4859535 + 4859533 +2 chr1 4859534 4859535 + 4859533 +3 chr1 4859534 4859535 + 4859533 +4 chr1 4859534 4859535 + 4859533 +5 chr1 4859534 4859535 + 4859533 +6 chr1 4859534 4859535 + 4859533 +7 chr1 4859534 4859535 + 4859533 +8 chr1 4859534 4859535 + 4859533 +1 chr1 4859534 4861642 + 4859533 +df2 + Chromosome Start End Strand Distance +0 chr1 4859534 4859535 + 4859533 +1 chr1 4859534 4859535 + 4859533 +2 chr1 4859534 4859535 + 4859533 +3 chr1 4859534 4859535 + 4859533 +4 chr1 4859534 4859535 + 4859533 +5 chr1 4859534 4859535 + 4859533 +6 chr1 4859534 4859535 + 4859533 +7 chr1 4859534 4859535 + 4859533 +8 chr1 4859534 4861642 + 4859533 +Actual + Chromosome Start End Strand Distance +0 chr1 4859534 4859535 + 4859533 +1 chr1 4859534 4859535 + 4859533 +2 chr1 4859534 4859535 + 4859533 +3 chr1 4859534 4859535 + 4859533 +4 chr1 4859534 4859535 + 4859533 +5 chr1 4859534 4859535 + 4859533 +6 chr1 4859534 4859535 + 4859533 +7 chr1 4859534 4859535 + 4859533 +8 chr1 4859534 4861642 + 4859533 + +Expected + Chromosome Start End Strand Distance +0 chr1 4859534 4859535 + 4859533 +1 chr1 4859534 4859535 + 4859533 +2 chr1 4859534 4859535 + 4859533 +3 chr1 4859534 4859535 + 4859533 +4 chr1 4859534 4859535 + 4859533 +5 chr1 4859534 4859535 + 4859533 +6 chr1 4859534 4859535 + 4859533 +7 chr1 4859534 4859535 + 4859533 +8 chr1 4859534 4861642 + 4859533 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=9, step=1) +Expected index +RangeIndex(start=0, stop=9, step=1) +index equal [ True True True True True True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpl5we61uu/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpl5we61uu/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +8 chr1 4859534 4861642 + 4859533 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 4859534 | 4861642 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 4859534 4861642 + 4859533 +df2 + Chromosome Start End Strand Distance +8 chr1 4859534 4861642 + 4859533 +Actual + Chromosome Start End Strand Distance +0 chr1 4859534 4861642 + 4859533 + +Expected + Chromosome Start End Strand Distance +0 chr1 4859534 4861642 + 4859533 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=1, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +index equal [ True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp359h_7ta/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp359h_7ta/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 4251845 4257067 + 3509527 +1 chr1 9839387 9839623 - 839173 +2 chr1 9839387 9839623 - 9105970 +3 chr1 9839387 9839686 + 2063289 +4 chr1 9839387 9841687 - 839173 +5 chr1 9839387 9841687 - 9105970 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 9839387 | 9839686 | a | 0 | ... | +| chr1 | 4251845 | 4257067 | a | 0 | ... | +| chr1 | 9839387 | 9841687 | a | 0 | ... | +| chr1 | 9839387 | 9841687 | a | 0 | ... | +| chr1 | 9839387 | 9839623 | a | 0 | ... | +| chr1 | 9839387 | 9839623 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 6 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +1 chr1 4251845 4257067 + 3509527 +4 chr1 9839387 9839623 - 839173 +5 chr1 9839387 9839623 - 9105970 +0 chr1 9839387 9839686 + 2063289 +2 chr1 9839387 9841687 - 839173 +3 chr1 9839387 9841687 - 9105970 +df2 + Chromosome Start End Strand Distance +0 chr1 4251845 4257067 + 3509527 +1 chr1 9839387 9839623 - 839173 +2 chr1 9839387 9839623 - 9105970 +3 chr1 9839387 9839686 + 2063289 +4 chr1 9839387 9841687 - 839173 +5 chr1 9839387 9841687 - 9105970 +Actual + Chromosome Start End Strand Distance +0 chr1 4251845 4257067 + 3509527 +1 chr1 9839387 9839623 - 839173 +2 chr1 9839387 9839623 - 9105970 +3 chr1 9839387 9839686 + 2063289 +4 chr1 9839387 9841687 - 839173 +5 chr1 9839387 9841687 - 9105970 + +Expected + Chromosome Start End Strand Distance +0 chr1 4251845 4257067 + 3509527 +1 chr1 9839387 9839623 - 839173 +2 chr1 9839387 9839623 - 9105970 +3 chr1 9839387 9839686 + 2063289 +4 chr1 9839387 9841687 - 839173 +5 chr1 9839387 9841687 - 9105970 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=6, step=1) +Expected index +RangeIndex(start=0, stop=6, step=1) +index equal [ True True True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpbxfbu0on/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpbxfbu0on/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 4251845 4257067 + 3509527 +1 chr1 9839387 9839623 - 9839386 +2 chr1 9839387 9839686 + 2070411 +3 chr1 9839387 9839686 + 2072794 +4 chr1 9839387 9841687 - 9839386 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 9839387 | 9839686 | a | 0 | ... | +| chr1 | 9839387 | 9839686 | a | 0 | ... | +| chr1 | 4251845 | 4257067 | a | 0 | ... | +| chr1 | 9839387 | 9841687 | a | 0 | ... | +| chr1 | 9839387 | 9839623 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 5 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +2 chr1 4251845 4257067 + 3509527 +4 chr1 9839387 9839623 - 9839386 +0 chr1 9839387 9839686 + 2070411 +1 chr1 9839387 9839686 + 2072794 +3 chr1 9839387 9841687 - 9839386 +df2 + Chromosome Start End Strand Distance +0 chr1 4251845 4257067 + 3509527 +1 chr1 9839387 9839623 - 9839386 +2 chr1 9839387 9839686 + 2070411 +3 chr1 9839387 9839686 + 2072794 +4 chr1 9839387 9841687 - 9839386 +Actual + Chromosome Start End Strand Distance +0 chr1 4251845 4257067 + 3509527 +1 chr1 9839387 9839623 - 9839386 +2 chr1 9839387 9839686 + 2070411 +3 chr1 9839387 9839686 + 2072794 +4 chr1 9839387 9841687 - 9839386 + +Expected + Chromosome Start End Strand Distance +0 chr1 4251845 4257067 + 3509527 +1 chr1 9839387 9839623 - 9839386 +2 chr1 9839387 9839686 + 2070411 +3 chr1 9839387 9839686 + 2072794 +4 chr1 9839387 9841687 - 9839386 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=5, step=1) +Expected index +RangeIndex(start=0, stop=5, step=1) +index equal [ True True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp1xuboaq1/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp1xuboaq1/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +2 chr1 9839387 9839686 + 9839386 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 9839387 | 9839686 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 9839387 9839686 + 9839386 +df2 + Chromosome Start End Strand Distance +2 chr1 9839387 9839686 + 9839386 +Actual + Chromosome Start End Strand Distance +0 chr1 9839387 9839686 + 9839386 + +Expected + Chromosome Start End Strand Distance +0 chr1 9839387 9839686 + 9839386 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=1, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +index equal [ True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp4luq3mzh/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp4luq3mzh/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpuibsny79/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpuibsny79/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpaacwrtbu/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpaacwrtbu/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpbkhiuo7_/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpbkhiuo7_/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp1fm5v0bn/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp1fm5v0bn/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 6999341 6999499 - 1369690 +1 chr1 6999341 6999499 - 1616522 +2 chr1 8028832 8034080 - 581941 +3 chr1 8028832 8034080 - 1383442 +4 chr1 8028832 8038479 + 911135 +5 chr1 8028832 8038479 + 1228395 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 8028832 | 8038479 | a | 0 | ... | +| chr1 | 8028832 | 8038479 | a | 0 | ... | +| chr1 | 6999341 | 6999499 | a | 0 | ... | +| chr1 | 6999341 | 6999499 | a | 0 | ... | +| chr1 | 8028832 | 8034080 | a | 0 | ... | +| chr1 | 8028832 | 8034080 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 6 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +2 chr1 6999341 6999499 - 1369690 +3 chr1 6999341 6999499 - 1616522 +4 chr1 8028832 8034080 - 581941 +5 chr1 8028832 8034080 - 1383442 +0 chr1 8028832 8038479 + 911135 +1 chr1 8028832 8038479 + 1228395 +df2 + Chromosome Start End Strand Distance +0 chr1 6999341 6999499 - 1369690 +1 chr1 6999341 6999499 - 1616522 +2 chr1 8028832 8034080 - 581941 +3 chr1 8028832 8034080 - 1383442 +4 chr1 8028832 8038479 + 911135 +5 chr1 8028832 8038479 + 1228395 +Actual + Chromosome Start End Strand Distance +0 chr1 6999341 6999499 - 1369690 +1 chr1 6999341 6999499 - 1616522 +2 chr1 8028832 8034080 - 581941 +3 chr1 8028832 8034080 - 1383442 +4 chr1 8028832 8038479 + 911135 +5 chr1 8028832 8038479 + 1228395 + +Expected + Chromosome Start End Strand Distance +0 chr1 6999341 6999499 - 1369690 +1 chr1 6999341 6999499 - 1616522 +2 chr1 8028832 8034080 - 581941 +3 chr1 8028832 8034080 - 1383442 +4 chr1 8028832 8038479 + 911135 +5 chr1 8028832 8038479 + 1228395 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=6, step=1) +Expected index +RangeIndex(start=0, stop=6, step=1) +index equal [ True True True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpahdk3m9h/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpahdk3m9h/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 6999341 6999499 - 6993771 +1 chr1 6999341 6999499 - 6999326 +2 chr1 8028832 8034080 - 8023262 +3 chr1 8028832 8034080 - 8028817 +4 chr1 8028832 8038479 + 8023262 +5 chr1 8028832 8038479 + 8028831 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 8028832 | 8038479 | a | 0 | ... | +| chr1 | 8028832 | 8038479 | a | 0 | ... | +| chr1 | 6999341 | 6999499 | a | 0 | ... | +| chr1 | 6999341 | 6999499 | a | 0 | ... | +| chr1 | 8028832 | 8034080 | a | 0 | ... | +| chr1 | 8028832 | 8034080 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 6 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +2 chr1 6999341 6999499 - 6993771 +3 chr1 6999341 6999499 - 6999326 +4 chr1 8028832 8034080 - 8023262 +5 chr1 8028832 8034080 - 8028817 +0 chr1 8028832 8038479 + 8023262 +1 chr1 8028832 8038479 + 8028831 +df2 + Chromosome Start End Strand Distance +0 chr1 6999341 6999499 - 6993771 +1 chr1 6999341 6999499 - 6999326 +2 chr1 8028832 8034080 - 8023262 +3 chr1 8028832 8034080 - 8028817 +4 chr1 8028832 8038479 + 8023262 +5 chr1 8028832 8038479 + 8028831 +Actual + Chromosome Start End Strand Distance +0 chr1 6999341 6999499 - 6993771 +1 chr1 6999341 6999499 - 6999326 +2 chr1 8028832 8034080 - 8023262 +3 chr1 8028832 8034080 - 8028817 +4 chr1 8028832 8038479 + 8023262 +5 chr1 8028832 8038479 + 8028831 + +Expected + Chromosome Start End Strand Distance +0 chr1 6999341 6999499 - 6993771 +1 chr1 6999341 6999499 - 6999326 +2 chr1 8028832 8034080 - 8023262 +3 chr1 8028832 8034080 - 8028817 +4 chr1 8028832 8038479 + 8023262 +5 chr1 8028832 8038479 + 8028831 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=6, step=1) +Expected index +RangeIndex(start=0, stop=6, step=1) +index equal [ True True True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmplywiofxw/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmplywiofxw/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 6999341 6999499 - 1029334 +2 chr1 8028832 8038479 + 1029334 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 8028832 | 8038479 | a | 0 | ... | +| chr1 | 6999341 | 6999499 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +1 chr1 6999341 6999499 - 1029334 +0 chr1 8028832 8038479 + 1029334 +df2 + Chromosome Start End Strand Distance +0 chr1 6999341 6999499 - 1029334 +2 chr1 8028832 8038479 + 1029334 +Actual + Chromosome Start End Strand Distance +0 chr1 6999341 6999499 - 1029334 +1 chr1 8028832 8038479 + 1029334 + +Expected + Chromosome Start End Strand Distance +0 chr1 6999341 6999499 - 1029334 +1 chr1 8028832 8038479 + 1029334 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=2, step=1) +Expected index +RangeIndex(start=0, stop=2, step=1) +index equal [ True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpx867uhyw/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpx867uhyw/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpqez9p9pz/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpqez9p9pz/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp6fzty6tv/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp6fzty6tv/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpq6u9wfo3/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpq6u9wfo3/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp84wjlne5/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp84wjlne5/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp76qb0y4y/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp76qb0y4y/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 699032 708205 + 7502255 +1 chr1 6496325 6497373 + 1713087 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 699032 | 708205 | a | 0 | ... | +| chr1 | 6496325 | 6497373 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 699032 708205 + 7502255 +1 chr1 6496325 6497373 + 1713087 +df2 + Chromosome Start End Strand Distance +0 chr1 699032 708205 + 7502255 +1 chr1 6496325 6497373 + 1713087 +Actual + Chromosome Start End Strand Distance +0 chr1 699032 708205 + 7502255 +1 chr1 6496325 6497373 + 1713087 + +Expected + Chromosome Start End Strand Distance +0 chr1 699032 708205 + 7502255 +1 chr1 6496325 6497373 + 1713087 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=2, step=1) +Expected index +RangeIndex(start=0, stop=2, step=1) +index equal [ True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpfqbxk0rt/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpfqbxk0rt/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 699032 708205 + 7502255 +1 chr1 6496325 6497373 + 1713087 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 699032 | 708205 | a | 0 | ... | +| chr1 | 6496325 | 6497373 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 699032 708205 + 7502255 +1 chr1 6496325 6497373 + 1713087 +df2 + Chromosome Start End Strand Distance +0 chr1 699032 708205 + 7502255 +1 chr1 6496325 6497373 + 1713087 +Actual + Chromosome Start End Strand Distance +0 chr1 699032 708205 + 7502255 +1 chr1 6496325 6497373 + 1713087 + +Expected + Chromosome Start End Strand Distance +0 chr1 699032 708205 + 7502255 +1 chr1 6496325 6497373 + 1713087 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=2, step=1) +Expected index +RangeIndex(start=0, stop=2, step=1) +index equal [ True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpkjmuabb8/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpkjmuabb8/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 699032 708205 + 2137104 +1 chr1 699032 708205 + 7502255 +2 chr1 6496325 6497373 + 1713087 +3 chr1 6496325 6497373 + 3651017 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 699032 | 708205 | a | 0 | ... | +| chr1 | 699032 | 708205 | a | 0 | ... | +| chr1 | 6496325 | 6497373 | a | 0 | ... | +| chr1 | 6496325 | 6497373 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 4 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 699032 708205 + 2137104 +1 chr1 699032 708205 + 7502255 +2 chr1 6496325 6497373 + 1713087 +3 chr1 6496325 6497373 + 3651017 +df2 + Chromosome Start End Strand Distance +0 chr1 699032 708205 + 2137104 +1 chr1 699032 708205 + 7502255 +2 chr1 6496325 6497373 + 1713087 +3 chr1 6496325 6497373 + 3651017 +Actual + Chromosome Start End Strand Distance +0 chr1 699032 708205 + 2137104 +1 chr1 699032 708205 + 7502255 +2 chr1 6496325 6497373 + 1713087 +3 chr1 6496325 6497373 + 3651017 + +Expected + Chromosome Start End Strand Distance +0 chr1 699032 708205 + 2137104 +1 chr1 699032 708205 + 7502255 +2 chr1 6496325 6497373 + 1713087 +3 chr1 6496325 6497373 + 3651017 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=4, step=1) +Expected index +RangeIndex(start=0, stop=4, step=1) +index equal [ True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp412095bn/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp412095bn/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 699032 708205 + 2137104 +1 chr1 699032 708205 + 7502255 +2 chr1 6496325 6497373 + 1713087 +3 chr1 6496325 6497373 + 3651017 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 699032 | 708205 | a | 0 | ... | +| chr1 | 699032 | 708205 | a | 0 | ... | +| chr1 | 6496325 | 6497373 | a | 0 | ... | +| chr1 | 6496325 | 6497373 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 4 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 699032 708205 + 2137104 +1 chr1 699032 708205 + 7502255 +2 chr1 6496325 6497373 + 1713087 +3 chr1 6496325 6497373 + 3651017 +df2 + Chromosome Start End Strand Distance +0 chr1 699032 708205 + 2137104 +1 chr1 699032 708205 + 7502255 +2 chr1 6496325 6497373 + 1713087 +3 chr1 6496325 6497373 + 3651017 +Actual + Chromosome Start End Strand Distance +0 chr1 699032 708205 + 2137104 +1 chr1 699032 708205 + 7502255 +2 chr1 6496325 6497373 + 1713087 +3 chr1 6496325 6497373 + 3651017 + +Expected + Chromosome Start End Strand Distance +0 chr1 699032 708205 + 2137104 +1 chr1 699032 708205 + 7502255 +2 chr1 6496325 6497373 + 1713087 +3 chr1 6496325 6497373 + 3651017 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=4, step=1) +Expected index +RangeIndex(start=0, stop=4, step=1) +index equal [ True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp37vjly0d/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp37vjly0d/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpz25lcqyo/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpz25lcqyo/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpanevuj5d/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpanevuj5d/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp8nb7mdxg/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp8nb7mdxg/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpov1hweou/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpov1hweou/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpzhghymzo/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpzhghymzo/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 9268564 9268565 + 9268563 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 9268564 | 9268565 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 9268564 9268565 + 9268563 +df2 + Chromosome Start End Strand Distance +0 chr1 9268564 9268565 + 9268563 +Actual + Chromosome Start End Strand Distance +0 chr1 9268564 9268565 + 9268563 + +Expected + Chromosome Start End Strand Distance +0 chr1 9268564 9268565 + 9268563 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=1, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +index equal [ True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmprikmuqzt/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmprikmuqzt/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 9268564 9268565 + 9268563 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 9268564 | 9268565 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 9268564 9268565 + 9268563 +df2 + Chromosome Start End Strand Distance +0 chr1 9268564 9268565 + 9268563 +Actual + Chromosome Start End Strand Distance +0 chr1 9268564 9268565 + 9268563 + +Expected + Chromosome Start End Strand Distance +0 chr1 9268564 9268565 + 9268563 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=1, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +index equal [ True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp93qllktu/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp93qllktu/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp34vb0tu0/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp34vb0tu0/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 3885388 3891623 - 152154 +1 chr1 3885388 3891623 - 483974 +4 chr1 8952387 8958349 - 634184 +5 chr1 8952387 8958349 - 1453088 +6 chr1 8952387 8962387 - 634184 +7 chr1 8952387 8962387 - 1453088 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 3885388 | 3891623 | a | 0 | ... | +| chr1 | 3885388 | 3891623 | a | 0 | ... | +| chr1 | 8952387 | 8958349 | a | 0 | ... | +| chr1 | 8952387 | 8958349 | a | 0 | ... | +| chr1 | 8952387 | 8962387 | a | 0 | ... | +| chr1 | 8952387 | 8962387 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 6 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 3885388 3891623 - 152154 +1 chr1 3885388 3891623 - 483974 +2 chr1 8952387 8958349 - 634184 +3 chr1 8952387 8958349 - 1453088 +4 chr1 8952387 8962387 - 634184 +5 chr1 8952387 8962387 - 1453088 +df2 + Chromosome Start End Strand Distance +0 chr1 3885388 3891623 - 152154 +1 chr1 3885388 3891623 - 483974 +4 chr1 8952387 8958349 - 634184 +5 chr1 8952387 8958349 - 1453088 +6 chr1 8952387 8962387 - 634184 +7 chr1 8952387 8962387 - 1453088 +Actual + Chromosome Start End Strand Distance +0 chr1 3885388 3891623 - 152154 +1 chr1 3885388 3891623 - 483974 +2 chr1 8952387 8958349 - 634184 +3 chr1 8952387 8958349 - 1453088 +4 chr1 8952387 8962387 - 634184 +5 chr1 8952387 8962387 - 1453088 + +Expected + Chromosome Start End Strand Distance +0 chr1 3885388 3891623 - 152154 +1 chr1 3885388 3891623 - 483974 +2 chr1 8952387 8958349 - 634184 +3 chr1 8952387 8958349 - 1453088 +4 chr1 8952387 8962387 - 634184 +5 chr1 8952387 8962387 - 1453088 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=6, step=1) +Expected index +RangeIndex(start=0, stop=6, step=1) +index equal [ True True True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpuwtdzt6z/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpuwtdzt6z/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +1 chr1 6872035 6874252 + 6872018 +2 chr1 8952387 8952642 + 8952370 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 8952387 | 8952642 | a | 0 | ... | +| chr1 | 6872035 | 6874252 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +1 chr1 6872035 6874252 + 6872018 +0 chr1 8952387 8952642 + 8952370 +df2 + Chromosome Start End Strand Distance +1 chr1 6872035 6874252 + 6872018 +2 chr1 8952387 8952642 + 8952370 +Actual + Chromosome Start End Strand Distance +0 chr1 6872035 6874252 + 6872018 +1 chr1 8952387 8952642 + 8952370 + +Expected + Chromosome Start End Strand Distance +0 chr1 6872035 6874252 + 6872018 +1 chr1 8952387 8952642 + 8952370 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=2, step=1) +Expected index +RangeIndex(start=0, stop=2, step=1) +index equal [ True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp8u9i2c7i/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp8u9i2c7i/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 3885388 3891623 - 2980413 +1 chr1 3885388 3891623 - 5060765 +2 chr1 6872035 6874252 + 2078136 +3 chr1 6872035 6874252 + 2980413 +4 chr1 8952387 8952642 + 5060765 +5 chr1 8952387 8958349 - 2078136 +6 chr1 8952387 8962387 - 2078136 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 8952387 | 8952642 | a | 0 | ... | +| chr1 | 6872035 | 6874252 | a | 0 | ... | +| chr1 | 6872035 | 6874252 | a | 0 | ... | +| chr1 | 3885388 | 3891623 | a | 0 | ... | +| chr1 | 3885388 | 3891623 | a | 0 | ... | +| chr1 | 8952387 | 8958349 | a | 0 | ... | +| chr1 | 8952387 | 8962387 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 7 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +3 chr1 3885388 3891623 - 2980413 +4 chr1 3885388 3891623 - 5060765 +1 chr1 6872035 6874252 + 2078136 +2 chr1 6872035 6874252 + 2980413 +0 chr1 8952387 8952642 + 5060765 +5 chr1 8952387 8958349 - 2078136 +6 chr1 8952387 8962387 - 2078136 +df2 + Chromosome Start End Strand Distance +0 chr1 3885388 3891623 - 2980413 +1 chr1 3885388 3891623 - 5060765 +2 chr1 6872035 6874252 + 2078136 +3 chr1 6872035 6874252 + 2980413 +4 chr1 8952387 8952642 + 5060765 +5 chr1 8952387 8958349 - 2078136 +6 chr1 8952387 8962387 - 2078136 +Actual + Chromosome Start End Strand Distance +0 chr1 3885388 3891623 - 2980413 +1 chr1 3885388 3891623 - 5060765 +2 chr1 6872035 6874252 + 2078136 +3 chr1 6872035 6874252 + 2980413 +4 chr1 8952387 8952642 + 5060765 +5 chr1 8952387 8958349 - 2078136 +6 chr1 8952387 8962387 - 2078136 + +Expected + Chromosome Start End Strand Distance +0 chr1 3885388 3891623 - 2980413 +1 chr1 3885388 3891623 - 5060765 +2 chr1 6872035 6874252 + 2078136 +3 chr1 6872035 6874252 + 2980413 +4 chr1 8952387 8952642 + 5060765 +5 chr1 8952387 8958349 - 2078136 +6 chr1 8952387 8962387 - 2078136 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=7, step=1) +Expected index +RangeIndex(start=0, stop=7, step=1) +index equal [ True True True True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpfphl5dbd/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpfphl5dbd/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 3885388 3891623 - 2980413 +1 chr1 3885388 3891623 - 5060765 +2 chr1 6872035 6874252 + 2078136 +3 chr1 6872035 6874252 + 2986647 +4 chr1 8952387 8952642 + 5066999 +5 chr1 8952387 8958349 - 2080352 +6 chr1 8952387 8962387 - 2080352 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 8952387 | 8952642 | a | 0 | ... | +| chr1 | 6872035 | 6874252 | a | 0 | ... | +| chr1 | 6872035 | 6874252 | a | 0 | ... | +| chr1 | 3885388 | 3891623 | a | 0 | ... | +| chr1 | 3885388 | 3891623 | a | 0 | ... | +| chr1 | 8952387 | 8958349 | a | 0 | ... | +| chr1 | 8952387 | 8962387 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 7 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +3 chr1 3885388 3891623 - 2980413 +4 chr1 3885388 3891623 - 5060765 +1 chr1 6872035 6874252 + 2078136 +2 chr1 6872035 6874252 + 2986647 +0 chr1 8952387 8952642 + 5066999 +5 chr1 8952387 8958349 - 2080352 +6 chr1 8952387 8962387 - 2080352 +df2 + Chromosome Start End Strand Distance +0 chr1 3885388 3891623 - 2980413 +1 chr1 3885388 3891623 - 5060765 +2 chr1 6872035 6874252 + 2078136 +3 chr1 6872035 6874252 + 2986647 +4 chr1 8952387 8952642 + 5066999 +5 chr1 8952387 8958349 - 2080352 +6 chr1 8952387 8962387 - 2080352 +Actual + Chromosome Start End Strand Distance +0 chr1 3885388 3891623 - 2980413 +1 chr1 3885388 3891623 - 5060765 +2 chr1 6872035 6874252 + 2078136 +3 chr1 6872035 6874252 + 2986647 +4 chr1 8952387 8952642 + 5066999 +5 chr1 8952387 8958349 - 2080352 +6 chr1 8952387 8962387 - 2080352 + +Expected + Chromosome Start End Strand Distance +0 chr1 3885388 3891623 - 2980413 +1 chr1 3885388 3891623 - 5060765 +2 chr1 6872035 6874252 + 2078136 +3 chr1 6872035 6874252 + 2986647 +4 chr1 8952387 8952642 + 5066999 +5 chr1 8952387 8958349 - 2080352 +6 chr1 8952387 8962387 - 2080352 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=7, step=1) +Expected index +RangeIndex(start=0, stop=7, step=1) +index equal [ True True True True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmphfxvegwc/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmphfxvegwc/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmphq6vg3_o/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmphq6vg3_o/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp4j_rhedx/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp4j_rhedx/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 3885388 3891623 - 2980413 +1 chr1 3885388 3891623 - 3885387 +2 chr1 6872035 6872036 - 6872034 +3 chr1 8952387 8952388 - 2080352 +4 chr1 8952387 8952388 - 8952386 +5 chr1 8952387 8952388 - 2080352 +6 chr1 8952387 8952388 - 8952386 +7 chr1 8952387 8962387 - 2080352 +8 chr1 8952387 8962387 - 8952386 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 3885388 | 3891623 | a | 0 | ... | +| chr1 | 3885388 | 3891623 | a | 0 | ... | +| chr1 | 8952387 | 8952388 | a | 0 | ... | +| chr1 | 8952387 | 8952388 | a | 0 | ... | +| ... | ... | ... | ... | ... | ... | +| chr1 | 8952387 | 8962387 | a | 0 | ... | +| chr1 | 8952387 | 8952388 | a | 0 | ... | +| chr1 | 8952387 | 8952388 | a | 0 | ... | +| chr1 | 6872035 | 6872036 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 9 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 3885388 3891623 - 2980413 +1 chr1 3885388 3891623 - 3885387 +8 chr1 6872035 6872036 - 6872034 +2 chr1 8952387 8952388 - 2080352 +6 chr1 8952387 8952388 - 2080352 +3 chr1 8952387 8952388 - 8952386 +7 chr1 8952387 8952388 - 8952386 +4 chr1 8952387 8962387 - 2080352 +5 chr1 8952387 8962387 - 8952386 +df2 + Chromosome Start End Strand Distance +0 chr1 3885388 3891623 - 2980413 +1 chr1 3885388 3891623 - 3885387 +2 chr1 6872035 6872036 - 6872034 +3 chr1 8952387 8952388 - 2080352 +5 chr1 8952387 8952388 - 2080352 +4 chr1 8952387 8952388 - 8952386 +6 chr1 8952387 8952388 - 8952386 +7 chr1 8952387 8962387 - 2080352 +8 chr1 8952387 8962387 - 8952386 +Actual + Chromosome Start End Strand Distance +0 chr1 3885388 3891623 - 2980413 +1 chr1 3885388 3891623 - 3885387 +2 chr1 6872035 6872036 - 6872034 +3 chr1 8952387 8952388 - 2080352 +4 chr1 8952387 8952388 - 2080352 +5 chr1 8952387 8952388 - 8952386 +6 chr1 8952387 8952388 - 8952386 +7 chr1 8952387 8962387 - 2080352 +8 chr1 8952387 8962387 - 8952386 + +Expected + Chromosome Start End Strand Distance +0 chr1 3885388 3891623 - 2980413 +1 chr1 3885388 3891623 - 3885387 +2 chr1 6872035 6872036 - 6872034 +3 chr1 8952387 8952388 - 2080352 +4 chr1 8952387 8952388 - 2080352 +5 chr1 8952387 8952388 - 8952386 +6 chr1 8952387 8952388 - 8952386 +7 chr1 8952387 8962387 - 2080352 +8 chr1 8952387 8962387 - 8952386 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=9, step=1) +Expected index +RangeIndex(start=0, stop=9, step=1) +index equal [ True True True True True True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp_dxlfng5/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp_dxlfng5/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpmlq2kspi/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpmlq2kspi/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpw5mbgw28/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpw5mbgw28/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpjuf9xe8w/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpjuf9xe8w/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpkbqgwtd2/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpkbqgwtd2/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 2 7304 - 3285255 +1 chr1 2 7304 - 8475119 +2 chr1 4973587 4980202 + 1913424 +3 chr1 4973587 4980202 + 4725647 +4 chr1 6604630 6611682 + 3193334 +5 chr1 6604630 6611682 + 3544467 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 6604630 | 6611682 | a | 0 | ... | +| chr1 | 6604630 | 6611682 | a | 0 | ... | +| chr1 | 4973587 | 4980202 | a | 0 | ... | +| chr1 | 4973587 | 4980202 | a | 0 | ... | +| chr1 | 2 | 7304 | a | 0 | ... | +| chr1 | 2 | 7304 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 6 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +4 chr1 2 7304 - 3285255 +5 chr1 2 7304 - 8475119 +2 chr1 4973587 4980202 + 1913424 +3 chr1 4973587 4980202 + 4725647 +0 chr1 6604630 6611682 + 3193334 +1 chr1 6604630 6611682 + 3544467 +df2 + Chromosome Start End Strand Distance +0 chr1 2 7304 - 3285255 +1 chr1 2 7304 - 8475119 +2 chr1 4973587 4980202 + 1913424 +3 chr1 4973587 4980202 + 4725647 +4 chr1 6604630 6611682 + 3193334 +5 chr1 6604630 6611682 + 3544467 +Actual + Chromosome Start End Strand Distance +0 chr1 2 7304 - 3285255 +1 chr1 2 7304 - 8475119 +2 chr1 4973587 4980202 + 1913424 +3 chr1 4973587 4980202 + 4725647 +4 chr1 6604630 6611682 + 3193334 +5 chr1 6604630 6611682 + 3544467 + +Expected + Chromosome Start End Strand Distance +0 chr1 2 7304 - 3285255 +1 chr1 2 7304 - 8475119 +2 chr1 4973587 4980202 + 1913424 +3 chr1 4973587 4980202 + 4725647 +4 chr1 6604630 6611682 + 3193334 +5 chr1 6604630 6611682 + 3544467 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=6, step=1) +Expected index +RangeIndex(start=0, stop=6, step=1) +index equal [ True True True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp25uft6n3/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp25uft6n3/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 2 7304 - 3285255 +1 chr1 2 7304 - 8475119 +2 chr1 4973587 4980202 + 1913424 +3 chr1 4973587 4980202 + 4725647 +4 chr1 6604630 6611682 + 3193334 +5 chr1 6604630 6611682 + 3544467 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 6604630 | 6611682 | a | 0 | ... | +| chr1 | 6604630 | 6611682 | a | 0 | ... | +| chr1 | 4973587 | 4980202 | a | 0 | ... | +| chr1 | 4973587 | 4980202 | a | 0 | ... | +| chr1 | 2 | 7304 | a | 0 | ... | +| chr1 | 2 | 7304 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 6 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +4 chr1 2 7304 - 3285255 +5 chr1 2 7304 - 8475119 +2 chr1 4973587 4980202 + 1913424 +3 chr1 4973587 4980202 + 4725647 +0 chr1 6604630 6611682 + 3193334 +1 chr1 6604630 6611682 + 3544467 +df2 + Chromosome Start End Strand Distance +0 chr1 2 7304 - 3285255 +1 chr1 2 7304 - 8475119 +2 chr1 4973587 4980202 + 1913424 +3 chr1 4973587 4980202 + 4725647 +4 chr1 6604630 6611682 + 3193334 +5 chr1 6604630 6611682 + 3544467 +Actual + Chromosome Start End Strand Distance +0 chr1 2 7304 - 3285255 +1 chr1 2 7304 - 8475119 +2 chr1 4973587 4980202 + 1913424 +3 chr1 4973587 4980202 + 4725647 +4 chr1 6604630 6611682 + 3193334 +5 chr1 6604630 6611682 + 3544467 + +Expected + Chromosome Start End Strand Distance +0 chr1 2 7304 - 3285255 +1 chr1 2 7304 - 8475119 +2 chr1 4973587 4980202 + 1913424 +3 chr1 4973587 4980202 + 4725647 +4 chr1 6604630 6611682 + 3193334 +5 chr1 6604630 6611682 + 3544467 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=6, step=1) +Expected index +RangeIndex(start=0, stop=6, step=1) +index equal [ True True True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp56wxt2db/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp56wxt2db/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 618836 619937 + 370896 +1 chr1 618836 619937 + 2438905 +2 chr1 914562 919317 + 666622 +3 chr1 914562 919317 + 2139525 +4 chr1 3298210 3303057 + 238047 +5 chr1 3298210 3303057 + 3050270 +6 chr1 6604630 6611682 + 3193334 +7 chr1 6604630 6611682 + 3544467 +8 chr1 8916775 8921062 + 883954 +9 chr1 8916775 8921062 + 5856612 +10 chr14 2 7304 - 8184867 +11 chr2 1740997 1750501 + 7674918 +13 chr21 1301699 1303918 + 4876152 +14 chr21 4973587 4980202 + 1199868 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 3298210 | 3303057 | a | 0 | ... | +| chr1 | 3298210 | 3303057 | a | 0 | ... | +| chr1 | 618836 | 619937 | a | 0 | ... | +| chr1 | 618836 | 619937 | a | 0 | ... | +| ... | ... | ... | ... | ... | ... | +| chr2 | 1740997 | 1750501 | a | 0 | ... | +| chr14 | 2 | 7304 | a | 0 | ... | +| chr21 | 1301699 | 1303918 | a | 0 | ... | +| chr21 | 4973587 | 4980202 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 14 rows and 12 columns from 4 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +11 chr14 2 7304 - 8184867 +2 chr1 618836 619937 + 370896 +3 chr1 618836 619937 + 2438905 +6 chr1 914562 919317 + 666622 +7 chr1 914562 919317 + 2139525 +12 chr21 1301699 1303918 + 4876152 +10 chr2 1740997 1750501 + 7674918 +0 chr1 3298210 3303057 + 238047 +1 chr1 3298210 3303057 + 3050270 +13 chr21 4973587 4980202 + 1199868 +4 chr1 6604630 6611682 + 3193334 +5 chr1 6604630 6611682 + 3544467 +8 chr1 8916775 8921062 + 883954 +9 chr1 8916775 8921062 + 5856612 +df2 + Chromosome Start End Strand Distance +10 chr14 2 7304 - 8184867 +0 chr1 618836 619937 + 370896 +1 chr1 618836 619937 + 2438905 +2 chr1 914562 919317 + 666622 +3 chr1 914562 919317 + 2139525 +13 chr21 1301699 1303918 + 4876152 +11 chr2 1740997 1750501 + 7674918 +4 chr1 3298210 3303057 + 238047 +5 chr1 3298210 3303057 + 3050270 +14 chr21 4973587 4980202 + 1199868 +6 chr1 6604630 6611682 + 3193334 +7 chr1 6604630 6611682 + 3544467 +8 chr1 8916775 8921062 + 883954 +9 chr1 8916775 8921062 + 5856612 +Actual + Chromosome Start End Strand Distance +0 chr1 618836 619937 + 370896 +1 chr1 618836 619937 + 2438905 +2 chr1 914562 919317 + 666622 +3 chr1 914562 919317 + 2139525 +4 chr1 3298210 3303057 + 238047 +5 chr1 3298210 3303057 + 3050270 +6 chr1 6604630 6611682 + 3193334 +7 chr1 6604630 6611682 + 3544467 +8 chr1 8916775 8921062 + 883954 +9 chr1 8916775 8921062 + 5856612 +10 chr14 2 7304 - 8184867 +11 chr2 1740997 1750501 + 7674918 +12 chr21 1301699 1303918 + 4876152 +13 chr21 4973587 4980202 + 1199868 + +Expected + Chromosome Start End Strand Distance +0 chr1 618836 619937 + 370896 +1 chr1 618836 619937 + 2438905 +2 chr1 914562 919317 + 666622 +3 chr1 914562 919317 + 2139525 +4 chr1 3298210 3303057 + 238047 +5 chr1 3298210 3303057 + 3050270 +6 chr1 6604630 6611682 + 3193334 +7 chr1 6604630 6611682 + 3544467 +8 chr1 8916775 8921062 + 883954 +9 chr1 8916775 8921062 + 5856612 +10 chr14 2 7304 - 8184867 +11 chr2 1740997 1750501 + 7674918 +12 chr21 1301699 1303918 + 4876152 +13 chr21 4973587 4980202 + 1199868 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=14, step=1) +Expected index +RangeIndex(start=0, stop=14, step=1) +index equal [ True True True True True True True True True True True True + True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpa92k4mhs/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpa92k4mhs/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpfz9rxj0i/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpfz9rxj0i/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp7d_e3z_p/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp7d_e3z_p/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpp4elsy1n/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpp4elsy1n/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp5lxgs_zc/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp5lxgs_zc/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp34nfu2to/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp34nfu2to/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp3bv8l1q2/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp3bv8l1q2/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpnsx6e8h4/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpnsx6e8h4/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmppbr_zryg/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmppbr_zryg/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 3423760 3432067 + 3184938 +1 chr1 8481955 8488856 - 278042 +2 chr1 8481955 8488856 - 575786 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 3423760 | 3432067 | a | 0 | ... | +| chr1 | 8481955 | 8488856 | a | 0 | ... | +| chr1 | 8481955 | 8488856 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 3 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 3423760 3432067 + 3184938 +1 chr1 8481955 8488856 - 278042 +2 chr1 8481955 8488856 - 575786 +df2 + Chromosome Start End Strand Distance +0 chr1 3423760 3432067 + 3184938 +1 chr1 8481955 8488856 - 278042 +2 chr1 8481955 8488856 - 575786 +Actual + Chromosome Start End Strand Distance +0 chr1 3423760 3432067 + 3184938 +1 chr1 8481955 8488856 - 278042 +2 chr1 8481955 8488856 - 575786 + +Expected + Chromosome Start End Strand Distance +0 chr1 3423760 3432067 + 3184938 +1 chr1 8481955 8488856 - 278042 +2 chr1 8481955 8488856 - 575786 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=3, step=1) +Expected index +RangeIndex(start=0, stop=3, step=1) +index equal [ True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp7ozzs9w1/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp7ozzs9w1/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 3423760 3432067 + 3184938 +1 chr1 8481955 8488856 + 1858969 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 3423760 | 3432067 | a | 0 | ... | +| chr1 | 8481955 | 8488856 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 3423760 3432067 + 3184938 +1 chr1 8481955 8488856 + 1858969 +df2 + Chromosome Start End Strand Distance +0 chr1 3423760 3432067 + 3184938 +1 chr1 8481955 8488856 + 1858969 +Actual + Chromosome Start End Strand Distance +0 chr1 3423760 3432067 + 3184938 +1 chr1 8481955 8488856 + 1858969 + +Expected + Chromosome Start End Strand Distance +0 chr1 3423760 3432067 + 3184938 +1 chr1 8481955 8488856 + 1858969 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=2, step=1) +Expected index +RangeIndex(start=0, stop=2, step=1) +index equal [ True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp2f2k_va2/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp2f2k_va2/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 3423760 3432067 + 3418611 +1 chr1 3423760 3432067 + 3423759 +2 chr1 8481955 8488856 + 8476806 +3 chr1 8481955 8488856 + 8481954 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 3423760 | 3432067 | a | 0 | ... | +| chr1 | 3423760 | 3432067 | a | 0 | ... | +| chr1 | 8481955 | 8488856 | a | 0 | ... | +| chr1 | 8481955 | 8488856 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 4 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 3423760 3432067 + 3418611 +1 chr1 3423760 3432067 + 3423759 +2 chr1 8481955 8488856 + 8476806 +3 chr1 8481955 8488856 + 8481954 +df2 + Chromosome Start End Strand Distance +0 chr1 3423760 3432067 + 3418611 +1 chr1 3423760 3432067 + 3423759 +2 chr1 8481955 8488856 + 8476806 +3 chr1 8481955 8488856 + 8481954 +Actual + Chromosome Start End Strand Distance +0 chr1 3423760 3432067 + 3418611 +1 chr1 3423760 3432067 + 3423759 +2 chr1 8481955 8488856 + 8476806 +3 chr1 8481955 8488856 + 8481954 + +Expected + Chromosome Start End Strand Distance +0 chr1 3423760 3432067 + 3418611 +1 chr1 3423760 3432067 + 3423759 +2 chr1 8481955 8488856 + 8476806 +3 chr1 8481955 8488856 + 8481954 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=4, step=1) +Expected index +RangeIndex(start=0, stop=4, step=1) +index equal [ True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp2b0scebu/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp2b0scebu/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 3423760 3432067 + 3423759 +1 chr1 8481955 8488856 + 8481954 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 3423760 | 3432067 | a | 0 | ... | +| chr1 | 8481955 | 8488856 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 3423760 3432067 + 3423759 +1 chr1 8481955 8488856 + 8481954 +df2 + Chromosome Start End Strand Distance +0 chr1 3423760 3432067 + 3423759 +1 chr1 8481955 8488856 + 8481954 +Actual + Chromosome Start End Strand Distance +0 chr1 3423760 3432067 + 3423759 +1 chr1 8481955 8488856 + 8481954 + +Expected + Chromosome Start End Strand Distance +0 chr1 3423760 3432067 + 3423759 +1 chr1 8481955 8488856 + 8481954 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=2, step=1) +Expected index +RangeIndex(start=0, stop=2, step=1) +index equal [ True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp4lodh9kv/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp4lodh9kv/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 3423760 3432067 + 3423759 +1 chr1 8481955 8488856 + 8481954 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 3423760 | 3432067 | a | 0 | ... | +| chr1 | 8481955 | 8488856 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 3423760 3432067 + 3423759 +1 chr1 8481955 8488856 + 8481954 +df2 + Chromosome Start End Strand Distance +0 chr1 3423760 3432067 + 3423759 +1 chr1 8481955 8488856 + 8481954 +Actual + Chromosome Start End Strand Distance +0 chr1 3423760 3432067 + 3423759 +1 chr1 8481955 8488856 + 8481954 + +Expected + Chromosome Start End Strand Distance +0 chr1 3423760 3432067 + 3423759 +1 chr1 8481955 8488856 + 8481954 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=2, step=1) +Expected index +RangeIndex(start=0, stop=2, step=1) +index equal [ True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp28hi20j1/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp28hi20j1/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 3423760 3432067 + 3423759 +1 chr1 8481955 8488856 + 8481954 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 3423760 | 3432067 | a | 0 | ... | +| chr1 | 8481955 | 8488856 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 3423760 3432067 + 3423759 +1 chr1 8481955 8488856 + 8481954 +df2 + Chromosome Start End Strand Distance +0 chr1 3423760 3432067 + 3423759 +1 chr1 8481955 8488856 + 8481954 +Actual + Chromosome Start End Strand Distance +0 chr1 3423760 3432067 + 3423759 +1 chr1 8481955 8488856 + 8481954 + +Expected + Chromosome Start End Strand Distance +0 chr1 3423760 3432067 + 3423759 +1 chr1 8481955 8488856 + 8481954 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=2, step=1) +Expected index +RangeIndex(start=0, stop=2, step=1) +index equal [ True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpk2msgum0/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpk2msgum0/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 3423760 3432067 + 3423759 +1 chr1 8481955 8488856 + 8481954 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 3423760 | 3432067 | a | 0 | ... | +| chr1 | 8481955 | 8488856 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 3423760 3432067 + 3423759 +1 chr1 8481955 8488856 + 8481954 +df2 + Chromosome Start End Strand Distance +0 chr1 3423760 3432067 + 3423759 +1 chr1 8481955 8488856 + 8481954 +Actual + Chromosome Start End Strand Distance +0 chr1 3423760 3432067 + 3423759 +1 chr1 8481955 8488856 + 8481954 + +Expected + Chromosome Start End Strand Distance +0 chr1 3423760 3432067 + 3423759 +1 chr1 8481955 8488856 + 8481954 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=2, step=1) +Expected index +RangeIndex(start=0, stop=2, step=1) +index equal [ True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp0qz1px8k/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp0qz1px8k/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 7512344 7512345 + 1283845 +1 chr1 7512344 7512345 + 1308366 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 7512344 | 7512345 | a | 0 | ... | +| chr1 | 7512344 | 7512345 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 7512344 7512345 + 1283845 +1 chr1 7512344 7512345 + 1308366 +df2 + Chromosome Start End Strand Distance +0 chr1 7512344 7512345 + 1283845 +1 chr1 7512344 7512345 + 1308366 +Actual + Chromosome Start End Strand Distance +0 chr1 7512344 7512345 + 1283845 +1 chr1 7512344 7512345 + 1308366 + +Expected + Chromosome Start End Strand Distance +0 chr1 7512344 7512345 + 1283845 +1 chr1 7512344 7512345 + 1308366 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=2, step=1) +Expected index +RangeIndex(start=0, stop=2, step=1) +index equal [ True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpopld_znk/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpopld_znk/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 7512344 7512345 + 1283845 +1 chr1 7512344 7512345 + 1308366 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 7512344 | 7512345 | a | 0 | ... | +| chr1 | 7512344 | 7512345 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 7512344 7512345 + 1283845 +1 chr1 7512344 7512345 + 1308366 +df2 + Chromosome Start End Strand Distance +0 chr1 7512344 7512345 + 1283845 +1 chr1 7512344 7512345 + 1308366 +Actual + Chromosome Start End Strand Distance +0 chr1 7512344 7512345 + 1283845 +1 chr1 7512344 7512345 + 1308366 + +Expected + Chromosome Start End Strand Distance +0 chr1 7512344 7512345 + 1283845 +1 chr1 7512344 7512345 + 1308366 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=2, step=1) +Expected index +RangeIndex(start=0, stop=2, step=1) +index equal [ True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpkd9so860/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpkd9so860/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +1 chr21 1032681 1038933 + 817534 +2 chr21 1032681 1038933 + 1731286 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr21 | 1032681 | 1038933 | a | 0 | ... | +| chr21 | 1032681 | 1038933 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr21 1032681 1038933 + 817534 +1 chr21 1032681 1038933 + 1731286 +df2 + Chromosome Start End Strand Distance +1 chr21 1032681 1038933 + 817534 +2 chr21 1032681 1038933 + 1731286 +Actual + Chromosome Start End Strand Distance +0 chr21 1032681 1038933 + 817534 +1 chr21 1032681 1038933 + 1731286 + +Expected + Chromosome Start End Strand Distance +0 chr21 1032681 1038933 + 817534 +1 chr21 1032681 1038933 + 1731286 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=2, step=1) +Expected index +RangeIndex(start=0, stop=2, step=1) +index equal [ True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp3g2ldrob/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp3g2ldrob/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr21 205242 215148 - 1485445 +1 chr21 205242 215148 - 4192926 +2 chr21 1700592 1705481 + 1064738 +3 chr21 1700592 1705481 + 1169016 +4 chr21 2770218 2777356 - 1064738 +5 chr21 2770218 2777356 - 1630718 +6 chr21 2874496 2882948 - 1169016 +7 chr21 2874496 2882948 - 1525126 +8 chr21 3037884 3046993 - 1332404 +9 chr21 3037884 3046993 - 1361081 +10 chr21 4408073 4409166 + 1361081 +11 chr21 4408073 4409166 + 1525126 +12 chr21 5535659 5540935 + 685975 +13 chr21 5535659 5540935 + 2488667 +14 chr21 6226909 6228500 - 685975 +15 chr21 6226909 6228500 - 1627926 +16 chr21 7856425 7860801 + 959910 +17 chr21 7856425 7860801 + 1627926 +18 chr21 8652378 8652691 + 168020 +19 chr21 8652378 8652691 + 2423879 +20 chr21 8820710 8827256 - 168020 +21 chr21 8820710 8827256 - 959910 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr21 | 7856425 | 7860801 | a | 0 | ... | +| chr21 | 7856425 | 7860801 | a | 0 | ... | +| chr21 | 8652378 | 8652691 | a | 0 | ... | +| chr21 | 8652378 | 8652691 | a | 0 | ... | +| ... | ... | ... | ... | ... | ... | +| chr21 | 6226909 | 6228500 | a | 0 | ... | +| chr21 | 6226909 | 6228500 | a | 0 | ... | +| chr21 | 3037884 | 3046993 | a | 0 | ... | +| chr21 | 3037884 | 3046993 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 22 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +14 chr21 205242 215148 - 1485445 +15 chr21 205242 215148 - 4192926 +8 chr21 1700592 1705481 + 1064738 +9 chr21 1700592 1705481 + 1169016 +12 chr21 2770218 2777356 - 1064738 +13 chr21 2770218 2777356 - 1630718 +10 chr21 2874496 2882948 - 1169016 +11 chr21 2874496 2882948 - 1525126 +20 chr21 3037884 3046993 - 1332404 +21 chr21 3037884 3046993 - 1361081 +6 chr21 4408073 4409166 + 1361081 +7 chr21 4408073 4409166 + 1525126 +4 chr21 5535659 5540935 + 685975 +5 chr21 5535659 5540935 + 2488667 +18 chr21 6226909 6228500 - 685975 +19 chr21 6226909 6228500 - 1627926 +0 chr21 7856425 7860801 + 959910 +1 chr21 7856425 7860801 + 1627926 +2 chr21 8652378 8652691 + 168020 +3 chr21 8652378 8652691 + 2423879 +16 chr21 8820710 8827256 - 168020 +17 chr21 8820710 8827256 - 959910 +df2 + Chromosome Start End Strand Distance +0 chr21 205242 215148 - 1485445 +1 chr21 205242 215148 - 4192926 +2 chr21 1700592 1705481 + 1064738 +3 chr21 1700592 1705481 + 1169016 +4 chr21 2770218 2777356 - 1064738 +5 chr21 2770218 2777356 - 1630718 +6 chr21 2874496 2882948 - 1169016 +7 chr21 2874496 2882948 - 1525126 +8 chr21 3037884 3046993 - 1332404 +9 chr21 3037884 3046993 - 1361081 +10 chr21 4408073 4409166 + 1361081 +11 chr21 4408073 4409166 + 1525126 +12 chr21 5535659 5540935 + 685975 +13 chr21 5535659 5540935 + 2488667 +14 chr21 6226909 6228500 - 685975 +15 chr21 6226909 6228500 - 1627926 +16 chr21 7856425 7860801 + 959910 +17 chr21 7856425 7860801 + 1627926 +18 chr21 8652378 8652691 + 168020 +19 chr21 8652378 8652691 + 2423879 +20 chr21 8820710 8827256 - 168020 +21 chr21 8820710 8827256 - 959910 +Actual + Chromosome Start End Strand Distance +0 chr21 205242 215148 - 1485445 +1 chr21 205242 215148 - 4192926 +2 chr21 1700592 1705481 + 1064738 +3 chr21 1700592 1705481 + 1169016 +4 chr21 2770218 2777356 - 1064738 +5 chr21 2770218 2777356 - 1630718 +6 chr21 2874496 2882948 - 1169016 +7 chr21 2874496 2882948 - 1525126 +8 chr21 3037884 3046993 - 1332404 +9 chr21 3037884 3046993 - 1361081 +10 chr21 4408073 4409166 + 1361081 +11 chr21 4408073 4409166 + 1525126 +12 chr21 5535659 5540935 + 685975 +13 chr21 5535659 5540935 + 2488667 +14 chr21 6226909 6228500 - 685975 +15 chr21 6226909 6228500 - 1627926 +16 chr21 7856425 7860801 + 959910 +17 chr21 7856425 7860801 + 1627926 +18 chr21 8652378 8652691 + 168020 +19 chr21 8652378 8652691 + 2423879 +20 chr21 8820710 8827256 - 168020 +21 chr21 8820710 8827256 - 959910 + +Expected + Chromosome Start End Strand Distance +0 chr21 205242 215148 - 1485445 +1 chr21 205242 215148 - 4192926 +2 chr21 1700592 1705481 + 1064738 +3 chr21 1700592 1705481 + 1169016 +4 chr21 2770218 2777356 - 1064738 +5 chr21 2770218 2777356 - 1630718 +6 chr21 2874496 2882948 - 1169016 +7 chr21 2874496 2882948 - 1525126 +8 chr21 3037884 3046993 - 1332404 +9 chr21 3037884 3046993 - 1361081 +10 chr21 4408073 4409166 + 1361081 +11 chr21 4408073 4409166 + 1525126 +12 chr21 5535659 5540935 + 685975 +13 chr21 5535659 5540935 + 2488667 +14 chr21 6226909 6228500 - 685975 +15 chr21 6226909 6228500 - 1627926 +16 chr21 7856425 7860801 + 959910 +17 chr21 7856425 7860801 + 1627926 +18 chr21 8652378 8652691 + 168020 +19 chr21 8652378 8652691 + 2423879 +20 chr21 8820710 8827256 - 168020 +21 chr21 8820710 8827256 - 959910 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=22, step=1) +Expected index +RangeIndex(start=0, stop=22, step=1) +index equal [ True True True True True True True True True True True True + True True True True True True True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpnziyqczs/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpnziyqczs/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr21 205242 215148 - 1485445 +1 chr21 205242 215148 - 4192926 +2 chr21 1700592 1705481 + 1064738 +3 chr21 1700592 1705481 + 1169016 +4 chr21 2770218 2777356 - 1069626 +5 chr21 2770218 2777356 - 1630718 +6 chr21 2874496 2882948 - 1173904 +7 chr21 2874496 2882948 - 1525126 +8 chr21 3037884 3046993 - 1337292 +9 chr21 3037884 3046993 - 1361081 +10 chr21 4408073 4409166 + 1370189 +11 chr21 4408073 4409166 + 1533577 +12 chr21 5535659 5540935 + 685975 +13 chr21 5535659 5540935 + 2497775 +14 chr21 6226909 6228500 - 691250 +15 chr21 6226909 6228500 - 1627926 +16 chr21 7856425 7860801 + 959910 +17 chr21 7856425 7860801 + 1629516 +18 chr21 8652378 8652691 + 168020 +19 chr21 8652378 8652691 + 2425469 +20 chr21 8820710 8827256 - 168332 +21 chr21 8820710 8827256 - 964285 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr21 | 7856425 | 7860801 | a | 0 | ... | +| chr21 | 7856425 | 7860801 | a | 0 | ... | +| chr21 | 8652378 | 8652691 | a | 0 | ... | +| chr21 | 8652378 | 8652691 | a | 0 | ... | +| ... | ... | ... | ... | ... | ... | +| chr21 | 6226909 | 6228500 | a | 0 | ... | +| chr21 | 6226909 | 6228500 | a | 0 | ... | +| chr21 | 3037884 | 3046993 | a | 0 | ... | +| chr21 | 3037884 | 3046993 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 22 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +14 chr21 205242 215148 - 1485445 +15 chr21 205242 215148 - 4192926 +8 chr21 1700592 1705481 + 1064738 +9 chr21 1700592 1705481 + 1169016 +12 chr21 2770218 2777356 - 1069626 +13 chr21 2770218 2777356 - 1630718 +10 chr21 2874496 2882948 - 1173904 +11 chr21 2874496 2882948 - 1525126 +20 chr21 3037884 3046993 - 1337292 +21 chr21 3037884 3046993 - 1361081 +6 chr21 4408073 4409166 + 1370189 +7 chr21 4408073 4409166 + 1533577 +4 chr21 5535659 5540935 + 685975 +5 chr21 5535659 5540935 + 2497775 +18 chr21 6226909 6228500 - 691250 +19 chr21 6226909 6228500 - 1627926 +0 chr21 7856425 7860801 + 959910 +1 chr21 7856425 7860801 + 1629516 +2 chr21 8652378 8652691 + 168020 +3 chr21 8652378 8652691 + 2425469 +16 chr21 8820710 8827256 - 168332 +17 chr21 8820710 8827256 - 964285 +df2 + Chromosome Start End Strand Distance +0 chr21 205242 215148 - 1485445 +1 chr21 205242 215148 - 4192926 +2 chr21 1700592 1705481 + 1064738 +3 chr21 1700592 1705481 + 1169016 +4 chr21 2770218 2777356 - 1069626 +5 chr21 2770218 2777356 - 1630718 +6 chr21 2874496 2882948 - 1173904 +7 chr21 2874496 2882948 - 1525126 +8 chr21 3037884 3046993 - 1337292 +9 chr21 3037884 3046993 - 1361081 +10 chr21 4408073 4409166 + 1370189 +11 chr21 4408073 4409166 + 1533577 +12 chr21 5535659 5540935 + 685975 +13 chr21 5535659 5540935 + 2497775 +14 chr21 6226909 6228500 - 691250 +15 chr21 6226909 6228500 - 1627926 +16 chr21 7856425 7860801 + 959910 +17 chr21 7856425 7860801 + 1629516 +18 chr21 8652378 8652691 + 168020 +19 chr21 8652378 8652691 + 2425469 +20 chr21 8820710 8827256 - 168332 +21 chr21 8820710 8827256 - 964285 +Actual + Chromosome Start End Strand Distance +0 chr21 205242 215148 - 1485445 +1 chr21 205242 215148 - 4192926 +2 chr21 1700592 1705481 + 1064738 +3 chr21 1700592 1705481 + 1169016 +4 chr21 2770218 2777356 - 1069626 +5 chr21 2770218 2777356 - 1630718 +6 chr21 2874496 2882948 - 1173904 +7 chr21 2874496 2882948 - 1525126 +8 chr21 3037884 3046993 - 1337292 +9 chr21 3037884 3046993 - 1361081 +10 chr21 4408073 4409166 + 1370189 +11 chr21 4408073 4409166 + 1533577 +12 chr21 5535659 5540935 + 685975 +13 chr21 5535659 5540935 + 2497775 +14 chr21 6226909 6228500 - 691250 +15 chr21 6226909 6228500 - 1627926 +16 chr21 7856425 7860801 + 959910 +17 chr21 7856425 7860801 + 1629516 +18 chr21 8652378 8652691 + 168020 +19 chr21 8652378 8652691 + 2425469 +20 chr21 8820710 8827256 - 168332 +21 chr21 8820710 8827256 - 964285 + +Expected + Chromosome Start End Strand Distance +0 chr21 205242 215148 - 1485445 +1 chr21 205242 215148 - 4192926 +2 chr21 1700592 1705481 + 1064738 +3 chr21 1700592 1705481 + 1169016 +4 chr21 2770218 2777356 - 1069626 +5 chr21 2770218 2777356 - 1630718 +6 chr21 2874496 2882948 - 1173904 +7 chr21 2874496 2882948 - 1525126 +8 chr21 3037884 3046993 - 1337292 +9 chr21 3037884 3046993 - 1361081 +10 chr21 4408073 4409166 + 1370189 +11 chr21 4408073 4409166 + 1533577 +12 chr21 5535659 5540935 + 685975 +13 chr21 5535659 5540935 + 2497775 +14 chr21 6226909 6228500 - 691250 +15 chr21 6226909 6228500 - 1627926 +16 chr21 7856425 7860801 + 959910 +17 chr21 7856425 7860801 + 1629516 +18 chr21 8652378 8652691 + 168020 +19 chr21 8652378 8652691 + 2425469 +20 chr21 8820710 8827256 - 168332 +21 chr21 8820710 8827256 - 964285 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=22, step=1) +Expected index +RangeIndex(start=0, stop=22, step=1) +index equal [ True True True True True True True True True True True True + True True True True True True True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmplabetern/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmplabetern/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr21 205242 215148 - 1485445 +1 chr21 205242 215148 - 2555071 +3 chr21 2770218 2777356 - 97141 +4 chr21 2770218 2777356 - 260529 +5 chr21 2874496 2882948 - 104278 +6 chr21 2874496 2882948 - 154937 +7 chr21 3037884 3046993 - 163388 +8 chr21 3037884 3046993 - 267666 +11 chr21 6226909 6228500 - 691250 +12 chr21 6226909 6228500 - 1627926 +15 chr21 8820710 8827256 - 168332 +16 chr21 8820710 8827256 - 964285 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr21 | 2874496 | 2882948 | a | 0 | ... | +| chr21 | 2874496 | 2882948 | a | 0 | ... | +| chr21 | 2770218 | 2777356 | a | 0 | ... | +| chr21 | 2770218 | 2777356 | a | 0 | ... | +| ... | ... | ... | ... | ... | ... | +| chr21 | 6226909 | 6228500 | a | 0 | ... | +| chr21 | 6226909 | 6228500 | a | 0 | ... | +| chr21 | 3037884 | 3046993 | a | 0 | ... | +| chr21 | 3037884 | 3046993 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 12 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +4 chr21 205242 215148 - 1485445 +5 chr21 205242 215148 - 2555071 +2 chr21 2770218 2777356 - 97141 +3 chr21 2770218 2777356 - 260529 +0 chr21 2874496 2882948 - 104278 +1 chr21 2874496 2882948 - 154937 +10 chr21 3037884 3046993 - 163388 +11 chr21 3037884 3046993 - 267666 +8 chr21 6226909 6228500 - 691250 +9 chr21 6226909 6228500 - 1627926 +6 chr21 8820710 8827256 - 168332 +7 chr21 8820710 8827256 - 964285 +df2 + Chromosome Start End Strand Distance +0 chr21 205242 215148 - 1485445 +1 chr21 205242 215148 - 2555071 +3 chr21 2770218 2777356 - 97141 +4 chr21 2770218 2777356 - 260529 +5 chr21 2874496 2882948 - 104278 +6 chr21 2874496 2882948 - 154937 +7 chr21 3037884 3046993 - 163388 +8 chr21 3037884 3046993 - 267666 +11 chr21 6226909 6228500 - 691250 +12 chr21 6226909 6228500 - 1627926 +15 chr21 8820710 8827256 - 168332 +16 chr21 8820710 8827256 - 964285 +Actual + Chromosome Start End Strand Distance +0 chr21 205242 215148 - 1485445 +1 chr21 205242 215148 - 2555071 +2 chr21 2770218 2777356 - 97141 +3 chr21 2770218 2777356 - 260529 +4 chr21 2874496 2882948 - 104278 +5 chr21 2874496 2882948 - 154937 +6 chr21 3037884 3046993 - 163388 +7 chr21 3037884 3046993 - 267666 +8 chr21 6226909 6228500 - 691250 +9 chr21 6226909 6228500 - 1627926 +10 chr21 8820710 8827256 - 168332 +11 chr21 8820710 8827256 - 964285 + +Expected + Chromosome Start End Strand Distance +0 chr21 205242 215148 - 1485445 +1 chr21 205242 215148 - 2555071 +2 chr21 2770218 2777356 - 97141 +3 chr21 2770218 2777356 - 260529 +4 chr21 2874496 2882948 - 104278 +5 chr21 2874496 2882948 - 154937 +6 chr21 3037884 3046993 - 163388 +7 chr21 3037884 3046993 - 267666 +8 chr21 6226909 6228500 - 691250 +9 chr21 6226909 6228500 - 1627926 +10 chr21 8820710 8827256 - 168332 +11 chr21 8820710 8827256 - 964285 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=12, step=1) +Expected index +RangeIndex(start=0, stop=12, step=1) +index equal [ True True True True True True True True True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmphd6d29vn/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmphd6d29vn/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr21 205242 215148 - 1485445 +1 chr21 205242 215148 - 2555071 +3 chr21 2770218 2771642 - 102855 +4 chr21 2770218 2771642 - 266243 +5 chr21 2874496 2882948 - 104278 +6 chr21 2874496 2882948 - 154937 +7 chr21 3037884 3046993 - 163388 +8 chr21 3037884 3046993 - 267666 +11 chr21 6226909 6228500 - 691250 +12 chr21 6226909 6228500 - 1627926 +15 chr21 8820710 8827256 - 168332 +16 chr21 8820710 8827256 - 964285 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr21 | 2874496 | 2882948 | a | 0 | ... | +| chr21 | 2874496 | 2882948 | a | 0 | ... | +| chr21 | 2770218 | 2771642 | a | 0 | ... | +| chr21 | 2770218 | 2771642 | a | 0 | ... | +| ... | ... | ... | ... | ... | ... | +| chr21 | 6226909 | 6228500 | a | 0 | ... | +| chr21 | 6226909 | 6228500 | a | 0 | ... | +| chr21 | 3037884 | 3046993 | a | 0 | ... | +| chr21 | 3037884 | 3046993 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 12 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +4 chr21 205242 215148 - 1485445 +5 chr21 205242 215148 - 2555071 +2 chr21 2770218 2771642 - 102855 +3 chr21 2770218 2771642 - 266243 +0 chr21 2874496 2882948 - 104278 +1 chr21 2874496 2882948 - 154937 +10 chr21 3037884 3046993 - 163388 +11 chr21 3037884 3046993 - 267666 +8 chr21 6226909 6228500 - 691250 +9 chr21 6226909 6228500 - 1627926 +6 chr21 8820710 8827256 - 168332 +7 chr21 8820710 8827256 - 964285 +df2 + Chromosome Start End Strand Distance +0 chr21 205242 215148 - 1485445 +1 chr21 205242 215148 - 2555071 +3 chr21 2770218 2771642 - 102855 +4 chr21 2770218 2771642 - 266243 +5 chr21 2874496 2882948 - 104278 +6 chr21 2874496 2882948 - 154937 +7 chr21 3037884 3046993 - 163388 +8 chr21 3037884 3046993 - 267666 +11 chr21 6226909 6228500 - 691250 +12 chr21 6226909 6228500 - 1627926 +15 chr21 8820710 8827256 - 168332 +16 chr21 8820710 8827256 - 964285 +Actual + Chromosome Start End Strand Distance +0 chr21 205242 215148 - 1485445 +1 chr21 205242 215148 - 2555071 +2 chr21 2770218 2771642 - 102855 +3 chr21 2770218 2771642 - 266243 +4 chr21 2874496 2882948 - 104278 +5 chr21 2874496 2882948 - 154937 +6 chr21 3037884 3046993 - 163388 +7 chr21 3037884 3046993 - 267666 +8 chr21 6226909 6228500 - 691250 +9 chr21 6226909 6228500 - 1627926 +10 chr21 8820710 8827256 - 168332 +11 chr21 8820710 8827256 - 964285 + +Expected + Chromosome Start End Strand Distance +0 chr21 205242 215148 - 1485445 +1 chr21 205242 215148 - 2555071 +2 chr21 2770218 2771642 - 102855 +3 chr21 2770218 2771642 - 266243 +4 chr21 2874496 2882948 - 104278 +5 chr21 2874496 2882948 - 154937 +6 chr21 3037884 3046993 - 163388 +7 chr21 3037884 3046993 - 267666 +8 chr21 6226909 6228500 - 691250 +9 chr21 6226909 6228500 - 1627926 +10 chr21 8820710 8827256 - 168332 +11 chr21 8820710 8827256 - 964285 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=12, step=1) +Expected index +RangeIndex(start=0, stop=12, step=1) +index equal [ True True True True True True True True True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpj6t45p86/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpj6t45p86/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 625035 630284 + 3257930 +1 chr1 625035 630284 + 3440236 +3 chr1 5762870 5772616 + 167148 +4 chr1 5762870 5772616 + 545530 +5 chr10 1633150 1642896 + 1857127 +6 chr10 3544982 3554728 - 2465524 +9 chr20 1704320 1709193 - 8030909 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 5762870 | 5772616 | a | 0 | ... | +| chr1 | 5762870 | 5772616 | a | 0 | ... | +| chr1 | 625035 | 630284 | a | 0 | ... | +| chr1 | 625035 | 630284 | a | 0 | ... | +| chr10 | 1633150 | 1642896 | a | 0 | ... | +| chr10 | 3544982 | 3554728 | a | 0 | ... | +| chr20 | 1704320 | 1709193 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 7 rows and 12 columns from 3 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +2 chr1 625035 630284 + 3257930 +3 chr1 625035 630284 + 3440236 +4 chr10 1633150 1642896 + 1857127 +6 chr20 1704320 1709193 - 8030909 +5 chr10 3544982 3554728 - 2465524 +0 chr1 5762870 5772616 + 167148 +1 chr1 5762870 5772616 + 545530 +df2 + Chromosome Start End Strand Distance +0 chr1 625035 630284 + 3257930 +1 chr1 625035 630284 + 3440236 +5 chr10 1633150 1642896 + 1857127 +9 chr20 1704320 1709193 - 8030909 +6 chr10 3544982 3554728 - 2465524 +3 chr1 5762870 5772616 + 167148 +4 chr1 5762870 5772616 + 545530 +Actual + Chromosome Start End Strand Distance +0 chr1 625035 630284 + 3257930 +1 chr1 625035 630284 + 3440236 +2 chr1 5762870 5772616 + 167148 +3 chr1 5762870 5772616 + 545530 +4 chr10 1633150 1642896 + 1857127 +5 chr10 3544982 3554728 - 2465524 +6 chr20 1704320 1709193 - 8030909 + +Expected + Chromosome Start End Strand Distance +0 chr1 625035 630284 + 3257930 +1 chr1 625035 630284 + 3440236 +2 chr1 5762870 5772616 + 167148 +3 chr1 5762870 5772616 + 545530 +4 chr10 1633150 1642896 + 1857127 +5 chr10 3544982 3554728 - 2465524 +6 chr20 1704320 1709193 - 8030909 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=7, step=1) +Expected index +RangeIndex(start=0, stop=7, step=1) +index equal [ True True True True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpv2ksyoxn/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpv2ksyoxn/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 625035 630284 + 3257930 +1 chr1 625035 630284 + 3440236 +3 chr1 5762870 5772616 + 167148 +4 chr1 5762870 5772616 + 545530 +5 chr10 1633150 1642896 + 1857127 +6 chr10 3544982 3554728 - 2465524 +9 chr20 1704320 1709193 - 8030909 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 5762870 | 5772616 | a | 0 | ... | +| chr1 | 5762870 | 5772616 | a | 0 | ... | +| chr1 | 625035 | 630284 | a | 0 | ... | +| chr1 | 625035 | 630284 | a | 0 | ... | +| chr10 | 1633150 | 1642896 | a | 0 | ... | +| chr10 | 3544982 | 3554728 | a | 0 | ... | +| chr20 | 1704320 | 1709193 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 7 rows and 12 columns from 3 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +2 chr1 625035 630284 + 3257930 +3 chr1 625035 630284 + 3440236 +4 chr10 1633150 1642896 + 1857127 +6 chr20 1704320 1709193 - 8030909 +5 chr10 3544982 3554728 - 2465524 +0 chr1 5762870 5772616 + 167148 +1 chr1 5762870 5772616 + 545530 +df2 + Chromosome Start End Strand Distance +0 chr1 625035 630284 + 3257930 +1 chr1 625035 630284 + 3440236 +5 chr10 1633150 1642896 + 1857127 +9 chr20 1704320 1709193 - 8030909 +6 chr10 3544982 3554728 - 2465524 +3 chr1 5762870 5772616 + 167148 +4 chr1 5762870 5772616 + 545530 +Actual + Chromosome Start End Strand Distance +0 chr1 625035 630284 + 3257930 +1 chr1 625035 630284 + 3440236 +2 chr1 5762870 5772616 + 167148 +3 chr1 5762870 5772616 + 545530 +4 chr10 1633150 1642896 + 1857127 +5 chr10 3544982 3554728 - 2465524 +6 chr20 1704320 1709193 - 8030909 + +Expected + Chromosome Start End Strand Distance +0 chr1 625035 630284 + 3257930 +1 chr1 625035 630284 + 3440236 +2 chr1 5762870 5772616 + 167148 +3 chr1 5762870 5772616 + 545530 +4 chr10 1633150 1642896 + 1857127 +5 chr10 3544982 3554728 - 2465524 +6 chr20 1704320 1709193 - 8030909 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=7, step=1) +Expected index +RangeIndex(start=0, stop=7, step=1) +index equal [ True True True True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpgt3tm3oh/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpgt3tm3oh/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +1 chr1 1 5250 + 3882964 +2 chr1 1 5250 + 4065270 +3 chr1 1 9747 + 3878467 +4 chr1 1 9747 + 4060773 +5 chr10 1 9747 + 3490276 +6 chr10 1 9747 - 1066897 +9 chr20 1 4874 - 9735228 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 1 | 9747 | a | 0 | ... | +| chr1 | 1 | 9747 | a | 0 | ... | +| chr1 | 1 | 5250 | a | 0 | ... | +| chr1 | 1 | 5250 | a | 0 | ... | +| chr10 | 1 | 9747 | a | 0 | ... | +| chr10 | 1 | 9747 | a | 0 | ... | +| chr20 | 1 | 4874 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 7 rows and 12 columns from 3 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +6 chr20 1 4874 - 9735228 +2 chr1 1 5250 + 3882964 +3 chr1 1 5250 + 4065270 +5 chr10 1 9747 - 1066897 +4 chr10 1 9747 + 3490276 +0 chr1 1 9747 + 3878467 +1 chr1 1 9747 + 4060773 +df2 + Chromosome Start End Strand Distance +9 chr20 1 4874 - 9735228 +1 chr1 1 5250 + 3882964 +2 chr1 1 5250 + 4065270 +6 chr10 1 9747 - 1066897 +5 chr10 1 9747 + 3490276 +3 chr1 1 9747 + 3878467 +4 chr1 1 9747 + 4060773 +Actual + Chromosome Start End Strand Distance +0 chr1 1 5250 + 3882964 +1 chr1 1 5250 + 4065270 +2 chr1 1 9747 + 3878467 +3 chr1 1 9747 + 4060773 +4 chr10 1 9747 + 3490276 +5 chr10 1 9747 - 1066897 +6 chr20 1 4874 - 9735228 + +Expected + Chromosome Start End Strand Distance +0 chr1 1 5250 + 3882964 +1 chr1 1 5250 + 4065270 +2 chr1 1 9747 + 3878467 +3 chr1 1 9747 + 4060773 +4 chr10 1 9747 + 3490276 +5 chr10 1 9747 - 1066897 +6 chr20 1 4874 - 9735228 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=7, step=1) +Expected index +RangeIndex(start=0, stop=7, step=1) +index equal [ True True True True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpyx0rc7jw/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpyx0rc7jw/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +5 chr10 1076643 1079459 + 2420564 +6 chr10 3500022 3501402 - 2420564 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr10 | 1076643 | 1079459 | a | 0 | ... | +| chr10 | 3500022 | 3501402 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr10 1076643 1079459 + 2420564 +1 chr10 3500022 3501402 - 2420564 +df2 + Chromosome Start End Strand Distance +5 chr10 1076643 1079459 + 2420564 +6 chr10 3500022 3501402 - 2420564 +Actual + Chromosome Start End Strand Distance +0 chr10 1076643 1079459 + 2420564 +1 chr10 3500022 3501402 - 2420564 + +Expected + Chromosome Start End Strand Distance +0 chr10 1076643 1079459 + 2420564 +1 chr10 3500022 3501402 - 2420564 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=2, step=1) +Expected index +RangeIndex(start=0, stop=2, step=1) +index equal [ True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp94c7njyq/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp94c7njyq/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpfzzerr11/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpfzzerr11/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpx8klgndt/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpx8klgndt/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 355833 361010 + 409219 +1 chr1 355833 361010 + 2838653 +2 chr17 2445390 2451504 - 6527933 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 355833 | 361010 | a | 0 | ... | +| chr1 | 355833 | 361010 | a | 0 | ... | +| chr17 | 2445390 | 2451504 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 3 rows and 12 columns from 2 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 355833 361010 + 409219 +1 chr1 355833 361010 + 2838653 +2 chr17 2445390 2451504 - 6527933 +df2 + Chromosome Start End Strand Distance +0 chr1 355833 361010 + 409219 +1 chr1 355833 361010 + 2838653 +2 chr17 2445390 2451504 - 6527933 +Actual + Chromosome Start End Strand Distance +0 chr1 355833 361010 + 409219 +1 chr1 355833 361010 + 2838653 +2 chr17 2445390 2451504 - 6527933 + +Expected + Chromosome Start End Strand Distance +0 chr1 355833 361010 + 409219 +1 chr1 355833 361010 + 2838653 +2 chr17 2445390 2451504 - 6527933 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=3, step=1) +Expected index +RangeIndex(start=0, stop=3, step=1) +index equal [ True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpqxehq1_j/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpqxehq1_j/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 355833 361010 + 2838653 +1 chr1 355833 361010 + 7751993 +2 chr17 2445390 2451504 - 6527933 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 355833 | 361010 | a | 0 | ... | +| chr1 | 355833 | 361010 | a | 0 | ... | +| chr17 | 2445390 | 2451504 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 3 rows and 12 columns from 2 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 355833 361010 + 2838653 +1 chr1 355833 361010 + 7751993 +2 chr17 2445390 2451504 - 6527933 +df2 + Chromosome Start End Strand Distance +0 chr1 355833 361010 + 2838653 +1 chr1 355833 361010 + 7751993 +2 chr17 2445390 2451504 - 6527933 +Actual + Chromosome Start End Strand Distance +0 chr1 355833 361010 + 2838653 +1 chr1 355833 361010 + 7751993 +2 chr17 2445390 2451504 - 6527933 + +Expected + Chromosome Start End Strand Distance +0 chr1 355833 361010 + 2838653 +1 chr1 355833 361010 + 7751993 +2 chr17 2445390 2451504 - 6527933 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=3, step=1) +Expected index +RangeIndex(start=0, stop=3, step=1) +index equal [ True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpwzfkr5cf/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpwzfkr5cf/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 355833 361010 + 350843 +1 chr17 2445390 2451504 - 2440400 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 355833 | 361010 | a | 0 | ... | +| chr17 | 2445390 | 2451504 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 2 rows and 12 columns from 2 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 355833 361010 + 350843 +1 chr17 2445390 2451504 - 2440400 +df2 + Chromosome Start End Strand Distance +0 chr1 355833 361010 + 350843 +1 chr17 2445390 2451504 - 2440400 +Actual + Chromosome Start End Strand Distance +0 chr1 355833 361010 + 350843 +1 chr17 2445390 2451504 - 2440400 + +Expected + Chromosome Start End Strand Distance +0 chr1 355833 361010 + 350843 +1 chr17 2445390 2451504 - 2440400 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=2, step=1) +Expected index +RangeIndex(start=0, stop=2, step=1) +index equal [ True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp1pwi7www/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp1pwi7www/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 355833 361010 + 350843 +1 chr17 2445390 2451504 - 2440400 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 355833 | 361010 | a | 0 | ... | +| chr17 | 2445390 | 2451504 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 2 rows and 12 columns from 2 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 355833 361010 + 350843 +1 chr17 2445390 2451504 - 2440400 +df2 + Chromosome Start End Strand Distance +0 chr1 355833 361010 + 350843 +1 chr17 2445390 2451504 - 2440400 +Actual + Chromosome Start End Strand Distance +0 chr1 355833 361010 + 350843 +1 chr17 2445390 2451504 - 2440400 + +Expected + Chromosome Start End Strand Distance +0 chr1 355833 361010 + 350843 +1 chr17 2445390 2451504 - 2440400 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=2, step=1) +Expected index +RangeIndex(start=0, stop=2, step=1) +index equal [ True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpbzjb1h6f/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpbzjb1h6f/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 355833 361010 + 350843 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 355833 | 361010 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 355833 361010 + 350843 +df2 + Chromosome Start End Strand Distance +0 chr1 355833 361010 + 350843 +Actual + Chromosome Start End Strand Distance +0 chr1 355833 361010 + 350843 + +Expected + Chromosome Start End Strand Distance +0 chr1 355833 361010 + 350843 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=1, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +index equal [ True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmprx74d3q3/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmprx74d3q3/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 355833 355834 + 350843 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 355833 | 355834 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 355833 355834 + 350843 +df2 + Chromosome Start End Strand Distance +0 chr1 355833 355834 + 350843 +Actual + Chromosome Start End Strand Distance +0 chr1 355833 355834 + 350843 + +Expected + Chromosome Start End Strand Distance +0 chr1 355833 355834 + 350843 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=1, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +index equal [ True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpj3nq_z6m/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpj3nq_z6m/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmppakzb5jp/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmppakzb5jp/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 2526992 2531724 - 4087739 +1 chr1 2526992 2531724 - 6732014 +2 chr1 3021530 3031530 + 478515 +3 chr1 5093845 5099436 - 1520027 +4 chr1 5093845 5099436 - 4164302 +5 chr1 5230930 5233528 + 1718074 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 3021530 | 3031530 | a | 0 | ... | +| chr1 | 5230930 | 5233528 | a | 0 | ... | +| chr1 | 5093845 | 5099436 | a | 0 | ... | +| chr1 | 5093845 | 5099436 | a | 0 | ... | +| chr1 | 2526992 | 2531724 | a | 0 | ... | +| chr1 | 2526992 | 2531724 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 6 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +4 chr1 2526992 2531724 - 4087739 +5 chr1 2526992 2531724 - 6732014 +0 chr1 3021530 3031530 + 478515 +2 chr1 5093845 5099436 - 1520027 +3 chr1 5093845 5099436 - 4164302 +1 chr1 5230930 5233528 + 1718074 +df2 + Chromosome Start End Strand Distance +0 chr1 2526992 2531724 - 4087739 +1 chr1 2526992 2531724 - 6732014 +2 chr1 3021530 3031530 + 478515 +3 chr1 5093845 5099436 - 1520027 +4 chr1 5093845 5099436 - 4164302 +5 chr1 5230930 5233528 + 1718074 +Actual + Chromosome Start End Strand Distance +0 chr1 2526992 2531724 - 4087739 +1 chr1 2526992 2531724 - 6732014 +2 chr1 3021530 3031530 + 478515 +3 chr1 5093845 5099436 - 1520027 +4 chr1 5093845 5099436 - 4164302 +5 chr1 5230930 5233528 + 1718074 + +Expected + Chromosome Start End Strand Distance +0 chr1 2526992 2531724 - 4087739 +1 chr1 2526992 2531724 - 6732014 +2 chr1 3021530 3031530 + 478515 +3 chr1 5093845 5099436 - 1520027 +4 chr1 5093845 5099436 - 4164302 +5 chr1 5230930 5233528 + 1718074 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=6, step=1) +Expected index +RangeIndex(start=0, stop=6, step=1) +index equal [ True True True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmph7jvjcc3/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmph7jvjcc3/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 2526992 2531724 - 4087739 +1 chr1 2526992 2531724 - 6732014 +2 chr1 3021530 3031530 + 478515 +3 chr1 5093845 5099436 - 1520027 +4 chr1 5093845 5099436 - 4164302 +5 chr1 5230930 5233528 + 1720886 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 3021530 | 3031530 | a | 0 | ... | +| chr1 | 5230930 | 5233528 | a | 0 | ... | +| chr1 | 5093845 | 5099436 | a | 0 | ... | +| chr1 | 5093845 | 5099436 | a | 0 | ... | +| chr1 | 2526992 | 2531724 | a | 0 | ... | +| chr1 | 2526992 | 2531724 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 6 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +4 chr1 2526992 2531724 - 4087739 +5 chr1 2526992 2531724 - 6732014 +0 chr1 3021530 3031530 + 478515 +2 chr1 5093845 5099436 - 1520027 +3 chr1 5093845 5099436 - 4164302 +1 chr1 5230930 5233528 + 1720886 +df2 + Chromosome Start End Strand Distance +0 chr1 2526992 2531724 - 4087739 +1 chr1 2526992 2531724 - 6732014 +2 chr1 3021530 3031530 + 478515 +3 chr1 5093845 5099436 - 1520027 +4 chr1 5093845 5099436 - 4164302 +5 chr1 5230930 5233528 + 1720886 +Actual + Chromosome Start End Strand Distance +0 chr1 2526992 2531724 - 4087739 +1 chr1 2526992 2531724 - 6732014 +2 chr1 3021530 3031530 + 478515 +3 chr1 5093845 5099436 - 1520027 +4 chr1 5093845 5099436 - 4164302 +5 chr1 5230930 5233528 + 1720886 + +Expected + Chromosome Start End Strand Distance +0 chr1 2526992 2531724 - 4087739 +1 chr1 2526992 2531724 - 6732014 +2 chr1 3021530 3031530 + 478515 +3 chr1 5093845 5099436 - 1520027 +4 chr1 5093845 5099436 - 4164302 +5 chr1 5230930 5233528 + 1720886 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=6, step=1) +Expected index +RangeIndex(start=0, stop=6, step=1) +index equal [ True True True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp3ryb4j_r/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp3ryb4j_r/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +1 chr1 3021530 3031530 + 478515 +2 chr1 3021530 3031530 + 3587933 +4 chr1 5230930 5233528 + 1385935 +5 chr1 5230930 5233528 + 1720886 +11 chrM 10000000 10006509 + 9907671 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 3021530 | 3031530 | a | 0 | ... | +| chr1 | 3021530 | 3031530 | a | 0 | ... | +| chr1 | 5230930 | 5233528 | a | 0 | ... | +| chr1 | 5230930 | 5233528 | a | 0 | ... | +| chrM | 10000000 | 10006509 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 5 rows and 12 columns from 2 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 3021530 3031530 + 478515 +1 chr1 3021530 3031530 + 3587933 +2 chr1 5230930 5233528 + 1385935 +3 chr1 5230930 5233528 + 1720886 +4 chrM 10000000 10006509 + 9907671 +df2 + Chromosome Start End Strand Distance +1 chr1 3021530 3031530 + 478515 +2 chr1 3021530 3031530 + 3587933 +4 chr1 5230930 5233528 + 1385935 +5 chr1 5230930 5233528 + 1720886 +11 chrM 10000000 10006509 + 9907671 +Actual + Chromosome Start End Strand Distance +0 chr1 3021530 3031530 + 478515 +1 chr1 3021530 3031530 + 3587933 +2 chr1 5230930 5233528 + 1385935 +3 chr1 5230930 5233528 + 1720886 +4 chrM 10000000 10006509 + 9907671 + +Expected + Chromosome Start End Strand Distance +0 chr1 3021530 3031530 + 478515 +1 chr1 3021530 3031530 + 3587933 +2 chr1 5230930 5233528 + 1385935 +3 chr1 5230930 5233528 + 1720886 +4 chrM 10000000 10006509 + 9907671 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=5, step=1) +Expected index +RangeIndex(start=0, stop=5, step=1) +index equal [ True True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpp92lh0ye/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpp92lh0ye/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpaqhw6ms6/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpaqhw6ms6/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpi2k6hp_u/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpi2k6hp_u/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +9 chr2 9275257 9278721 - 9275256 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr2 | 9275257 | 9278721 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr2 9275257 9278721 - 9275256 +df2 + Chromosome Start End Strand Distance +9 chr2 9275257 9278721 - 9275256 +Actual + Chromosome Start End Strand Distance +0 chr2 9275257 9278721 - 9275256 + +Expected + Chromosome Start End Strand Distance +0 chr2 9275257 9278721 - 9275256 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=1, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +index equal [ True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpc_vxnpx5/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpc_vxnpx5/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr2 1 2 + 9275256 +1 chr2 1 2 + 9275256 +2 chr2 1 2 + 9275256 +3 chr2 1 2 - 1 +4 chr2 1 2 - 1 +8 chr2 2 8195 + 1 +9 chr2 2 8195 + 9267063 +10 chr2 9275257 9278721 - 9267063 +11 chr2 9275257 9278721 - 9275256 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr2 | 2 | 8195 | a | 0 | ... | +| chr2 | 2 | 8195 | a | 0 | ... | +| chr2 | 1 | 2 | a | 0 | ... | +| chr2 | 1 | 2 | a | 0 | ... | +| ... | ... | ... | ... | ... | ... | +| chr2 | 1 | 2 | a | 0 | ... | +| chr2 | 1 | 2 | a | 0 | ... | +| chr2 | 9275257 | 9278721 | a | 0 | ... | +| chr2 | 9275257 | 9278721 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 9 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +5 chr2 1 2 - 1 +6 chr2 1 2 - 1 +2 chr2 1 2 + 9275256 +3 chr2 1 2 + 9275256 +4 chr2 1 2 + 9275256 +0 chr2 2 8195 + 1 +1 chr2 2 8195 + 9267063 +7 chr2 9275257 9278721 - 9267063 +8 chr2 9275257 9278721 - 9275256 +df2 + Chromosome Start End Strand Distance +3 chr2 1 2 - 1 +4 chr2 1 2 - 1 +0 chr2 1 2 + 9275256 +1 chr2 1 2 + 9275256 +2 chr2 1 2 + 9275256 +8 chr2 2 8195 + 1 +9 chr2 2 8195 + 9267063 +10 chr2 9275257 9278721 - 9267063 +11 chr2 9275257 9278721 - 9275256 +Actual + Chromosome Start End Strand Distance +0 chr2 1 2 + 9275256 +1 chr2 1 2 + 9275256 +2 chr2 1 2 + 9275256 +3 chr2 1 2 - 1 +4 chr2 1 2 - 1 +5 chr2 2 8195 + 1 +6 chr2 2 8195 + 9267063 +7 chr2 9275257 9278721 - 9267063 +8 chr2 9275257 9278721 - 9275256 + +Expected + Chromosome Start End Strand Distance +0 chr2 1 2 + 9275256 +1 chr2 1 2 + 9275256 +2 chr2 1 2 + 9275256 +3 chr2 1 2 - 1 +4 chr2 1 2 - 1 +5 chr2 2 8195 + 1 +6 chr2 2 8195 + 9267063 +7 chr2 9275257 9278721 - 9267063 +8 chr2 9275257 9278721 - 9275256 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=9, step=1) +Expected index +RangeIndex(start=0, stop=9, step=1) +index equal [ True True True True True True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp4tubp0v9/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp4tubp0v9/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 9600731 9604271 - 6482579 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 9600731 | 9604271 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 9600731 9604271 - 6482579 +df2 + Chromosome Start End Strand Distance +0 chr1 9600731 9604271 - 6482579 +Actual + Chromosome Start End Strand Distance +0 chr1 9600731 9604271 - 6482579 + +Expected + Chromosome Start End Strand Distance +0 chr1 9600731 9604271 - 6482579 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=1, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +index equal [ True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp02asiynf/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp02asiynf/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 9600731 9604271 - 7157233 +1 chr1 9600731 9604271 - 9139680 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 9600731 | 9604271 | a | 0 | ... | +| chr1 | 9600731 | 9604271 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 9600731 9604271 - 7157233 +1 chr1 9600731 9604271 - 9139680 +df2 + Chromosome Start End Strand Distance +0 chr1 9600731 9604271 - 7157233 +1 chr1 9600731 9604271 - 9139680 +Actual + Chromosome Start End Strand Distance +0 chr1 9600731 9604271 - 7157233 +1 chr1 9600731 9604271 - 9139680 + +Expected + Chromosome Start End Strand Distance +0 chr1 9600731 9604271 - 7157233 +1 chr1 9600731 9604271 - 9139680 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=2, step=1) +Expected index +RangeIndex(start=0, stop=2, step=1) +index equal [ True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpq7f9unze/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpq7f9unze/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 9600731 9604271 - 9139680 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 9600731 | 9604271 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 9600731 9604271 - 9139680 +df2 + Chromosome Start End Strand Distance +0 chr1 9600731 9604271 - 9139680 +Actual + Chromosome Start End Strand Distance +0 chr1 9600731 9604271 - 9139680 + +Expected + Chromosome Start End Strand Distance +0 chr1 9600731 9604271 - 9139680 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=1, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +index equal [ True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpyyt0419l/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpyyt0419l/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp4sxx9dnm/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp4sxx9dnm/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +3 chr1 9600731 9604271 - 9600730 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 9600731 | 9604271 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 9600731 9604271 - 9600730 +df2 + Chromosome Start End Strand Distance +3 chr1 9600731 9604271 - 9600730 +Actual + Chromosome Start End Strand Distance +0 chr1 9600731 9604271 - 9600730 + +Expected + Chromosome Start End Strand Distance +0 chr1 9600731 9604271 - 9600730 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=1, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +index equal [ True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp69kh1uhy/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp69kh1uhy/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +3 chr1 9600731 9604271 - 9597191 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 9600731 | 9604271 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 9600731 9604271 - 9597191 +df2 + Chromosome Start End Strand Distance +3 chr1 9600731 9604271 - 9597191 +Actual + Chromosome Start End Strand Distance +0 chr1 9600731 9604271 - 9597191 + +Expected + Chromosome Start End Strand Distance +0 chr1 9600731 9604271 - 9597191 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=1, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +index equal [ True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpp8urmjny/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpp8urmjny/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpbr3qf3bd/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpbr3qf3bd/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 1057651 1065440 + 3360137 +1 chr1 1057651 1065440 + 3618193 +2 chr1 2537842 2545247 + 1880330 +3 chr1 2537842 2545247 + 2138386 +4 chr1 3130923 3138912 - 528569 +5 chr1 3130923 3138912 - 5461452 +6 chr1 3782546 3788937 - 111961 +7 chr1 3782546 3788937 - 4811427 +8 chr1 4232877 4233955 + 191622 +9 chr1 4232877 4233955 + 449678 +10 chr1 4349898 4354666 - 679313 +11 chr1 4349898 4354666 - 4245698 +12 chr1 7044992 7049342 - 1551022 +13 chr1 7044992 7049342 - 3374407 +14 chr1 7156751 7161366 - 1438998 +15 chr1 7156751 7161366 - 3486166 +16 chr1 7646517 7654770 + 1443566 +17 chr1 7646517 7654770 + 1742288 +18 chr1 8237240 8238046 + 860290 +19 chr1 8237240 8238046 + 2333011 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 4232877 | 4233955 | a | 0 | ... | +| chr1 | 4232877 | 4233955 | a | 0 | ... | +| chr1 | 1057651 | 1065440 | a | 0 | ... | +| chr1 | 1057651 | 1065440 | a | 0 | ... | +| ... | ... | ... | ... | ... | ... | +| chr1 | 7044992 | 7049342 | a | 0 | ... | +| chr1 | 7044992 | 7049342 | a | 0 | ... | +| chr1 | 3130923 | 3138912 | a | 0 | ... | +| chr1 | 3130923 | 3138912 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 20 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +2 chr1 1057651 1065440 + 3360137 +3 chr1 1057651 1065440 + 3618193 +6 chr1 2537842 2545247 + 1880330 +7 chr1 2537842 2545247 + 2138386 +18 chr1 3130923 3138912 - 528569 +19 chr1 3130923 3138912 - 5461452 +10 chr1 3782546 3788937 - 111961 +11 chr1 3782546 3788937 - 4811427 +0 chr1 4232877 4233955 + 191622 +1 chr1 4232877 4233955 + 449678 +14 chr1 4349898 4354666 - 679313 +15 chr1 4349898 4354666 - 4245698 +16 chr1 7044992 7049342 - 1551022 +17 chr1 7044992 7049342 - 3374407 +12 chr1 7156751 7161366 - 1438998 +13 chr1 7156751 7161366 - 3486166 +4 chr1 7646517 7654770 + 1443566 +5 chr1 7646517 7654770 + 1742288 +8 chr1 8237240 8238046 + 860290 +9 chr1 8237240 8238046 + 2333011 +df2 + Chromosome Start End Strand Distance +0 chr1 1057651 1065440 + 3360137 +1 chr1 1057651 1065440 + 3618193 +2 chr1 2537842 2545247 + 1880330 +3 chr1 2537842 2545247 + 2138386 +4 chr1 3130923 3138912 - 528569 +5 chr1 3130923 3138912 - 5461452 +6 chr1 3782546 3788937 - 111961 +7 chr1 3782546 3788937 - 4811427 +8 chr1 4232877 4233955 + 191622 +9 chr1 4232877 4233955 + 449678 +10 chr1 4349898 4354666 - 679313 +11 chr1 4349898 4354666 - 4245698 +12 chr1 7044992 7049342 - 1551022 +13 chr1 7044992 7049342 - 3374407 +14 chr1 7156751 7161366 - 1438998 +15 chr1 7156751 7161366 - 3486166 +16 chr1 7646517 7654770 + 1443566 +17 chr1 7646517 7654770 + 1742288 +18 chr1 8237240 8238046 + 860290 +19 chr1 8237240 8238046 + 2333011 +Actual + Chromosome Start End Strand Distance +0 chr1 1057651 1065440 + 3360137 +1 chr1 1057651 1065440 + 3618193 +2 chr1 2537842 2545247 + 1880330 +3 chr1 2537842 2545247 + 2138386 +4 chr1 3130923 3138912 - 528569 +5 chr1 3130923 3138912 - 5461452 +6 chr1 3782546 3788937 - 111961 +7 chr1 3782546 3788937 - 4811427 +8 chr1 4232877 4233955 + 191622 +9 chr1 4232877 4233955 + 449678 +10 chr1 4349898 4354666 - 679313 +11 chr1 4349898 4354666 - 4245698 +12 chr1 7044992 7049342 - 1551022 +13 chr1 7044992 7049342 - 3374407 +14 chr1 7156751 7161366 - 1438998 +15 chr1 7156751 7161366 - 3486166 +16 chr1 7646517 7654770 + 1443566 +17 chr1 7646517 7654770 + 1742288 +18 chr1 8237240 8238046 + 860290 +19 chr1 8237240 8238046 + 2333011 + +Expected + Chromosome Start End Strand Distance +0 chr1 1057651 1065440 + 3360137 +1 chr1 1057651 1065440 + 3618193 +2 chr1 2537842 2545247 + 1880330 +3 chr1 2537842 2545247 + 2138386 +4 chr1 3130923 3138912 - 528569 +5 chr1 3130923 3138912 - 5461452 +6 chr1 3782546 3788937 - 111961 +7 chr1 3782546 3788937 - 4811427 +8 chr1 4232877 4233955 + 191622 +9 chr1 4232877 4233955 + 449678 +10 chr1 4349898 4354666 - 679313 +11 chr1 4349898 4354666 - 4245698 +12 chr1 7044992 7049342 - 1551022 +13 chr1 7044992 7049342 - 3374407 +14 chr1 7156751 7161366 - 1438998 +15 chr1 7156751 7161366 - 3486166 +16 chr1 7646517 7654770 + 1443566 +17 chr1 7646517 7654770 + 1742288 +18 chr1 8237240 8238046 + 860290 +19 chr1 8237240 8238046 + 2333011 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=20, step=1) +Expected index +RangeIndex(start=0, stop=20, step=1) +index equal [ True True True True True True True True True True True True + True True True True True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpnk78j9bj/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpnk78j9bj/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 1 2 + 1077 +1 chr1 1 2 + 1077 +2 chr1 1 2 + 1077 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 1 | 2 | a | 0 | ... | +| chr1 | 1 | 2 | a | 0 | ... | +| chr1 | 1 | 2 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 3 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 1 2 + 1077 +1 chr1 1 2 + 1077 +2 chr1 1 2 + 1077 +df2 + Chromosome Start End Strand Distance +0 chr1 1 2 + 1077 +1 chr1 1 2 + 1077 +2 chr1 1 2 + 1077 +Actual + Chromosome Start End Strand Distance +0 chr1 1 2 + 1077 +1 chr1 1 2 + 1077 +2 chr1 1 2 + 1077 + +Expected + Chromosome Start End Strand Distance +0 chr1 1 2 + 1077 +1 chr1 1 2 + 1077 +2 chr1 1 2 + 1077 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=3, step=1) +Expected index +RangeIndex(start=0, stop=3, step=1) +index equal [ True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpycgpcbom/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpycgpcbom/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 1 2 + 4349 +1 chr1 1 2 + 6390 +2 chr1 1 2 + 4349 +3 chr1 1 2 + 6390 +4 chr1 1 2 + 4349 +5 chr1 1 2 + 6390 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 1 | 2 | a | 0 | ... | +| chr1 | 1 | 2 | a | 0 | ... | +| chr1 | 1 | 2 | a | 0 | ... | +| chr1 | 1 | 2 | a | 0 | ... | +| chr1 | 1 | 2 | a | 0 | ... | +| chr1 | 1 | 2 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 6 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 1 2 + 4349 +2 chr1 1 2 + 4349 +4 chr1 1 2 + 4349 +1 chr1 1 2 + 6390 +3 chr1 1 2 + 6390 +5 chr1 1 2 + 6390 +df2 + Chromosome Start End Strand Distance +0 chr1 1 2 + 4349 +2 chr1 1 2 + 4349 +4 chr1 1 2 + 4349 +1 chr1 1 2 + 6390 +3 chr1 1 2 + 6390 +5 chr1 1 2 + 6390 +Actual + Chromosome Start End Strand Distance +0 chr1 1 2 + 4349 +1 chr1 1 2 + 4349 +2 chr1 1 2 + 4349 +3 chr1 1 2 + 6390 +4 chr1 1 2 + 6390 +5 chr1 1 2 + 6390 + +Expected + Chromosome Start End Strand Distance +0 chr1 1 2 + 4349 +1 chr1 1 2 + 4349 +2 chr1 1 2 + 4349 +3 chr1 1 2 + 6390 +4 chr1 1 2 + 6390 +5 chr1 1 2 + 6390 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=6, step=1) +Expected index +RangeIndex(start=0, stop=6, step=1) +index equal [ True True True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpy90c9b9_/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpy90c9b9_/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 1 2 + 4349 +1 chr1 1 2 + 6390 +2 chr1 1 2 + 4349 +3 chr1 1 2 + 6390 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 1 | 2 | a | 0 | ... | +| chr1 | 1 | 2 | a | 0 | ... | +| chr1 | 1 | 2 | a | 0 | ... | +| chr1 | 1 | 2 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 4 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 1 2 + 4349 +2 chr1 1 2 + 4349 +1 chr1 1 2 + 6390 +3 chr1 1 2 + 6390 +df2 + Chromosome Start End Strand Distance +0 chr1 1 2 + 4349 +2 chr1 1 2 + 4349 +1 chr1 1 2 + 6390 +3 chr1 1 2 + 6390 +Actual + Chromosome Start End Strand Distance +0 chr1 1 2 + 4349 +1 chr1 1 2 + 4349 +2 chr1 1 2 + 6390 +3 chr1 1 2 + 6390 + +Expected + Chromosome Start End Strand Distance +0 chr1 1 2 + 4349 +1 chr1 1 2 + 4349 +2 chr1 1 2 + 6390 +3 chr1 1 2 + 6390 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=4, step=1) +Expected index +RangeIndex(start=0, stop=4, step=1) +index equal [ True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpyuverq07/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpyuverq07/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp_e5s7ked/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp_e5s7ked/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp1uan_ixu/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp1uan_ixu/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpa600hsex/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpa600hsex/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 1829345 1834615 - 1523364 +1 chr1 2600862 2605724 + 2482260 +2 chr1 5481710 5490706 - 5175729 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 2600862 | 2605724 | a | 0 | ... | +| chr1 | 5481710 | 5490706 | a | 0 | ... | +| chr1 | 1829345 | 1834615 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 3 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +2 chr1 1829345 1834615 - 1523364 +0 chr1 2600862 2605724 + 2482260 +1 chr1 5481710 5490706 - 5175729 +df2 + Chromosome Start End Strand Distance +0 chr1 1829345 1834615 - 1523364 +1 chr1 2600862 2605724 + 2482260 +2 chr1 5481710 5490706 - 5175729 +Actual + Chromosome Start End Strand Distance +0 chr1 1829345 1834615 - 1523364 +1 chr1 2600862 2605724 + 2482260 +2 chr1 5481710 5490706 - 5175729 + +Expected + Chromosome Start End Strand Distance +0 chr1 1829345 1834615 - 1523364 +1 chr1 2600862 2605724 + 2482260 +2 chr1 5481710 5490706 - 5175729 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=3, step=1) +Expected index +RangeIndex(start=0, stop=3, step=1) +index equal [ True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpmwnmtiqr/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpmwnmtiqr/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpy_gcbj0z/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpy_gcbj0z/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp7sn0kgth/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp7sn0kgth/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp_0wwvx3z/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp_0wwvx3z/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp2t83ux_k/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp2t83ux_k/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmphk285rdh/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmphk285rdh/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 1524761 1526818 - 6503 +1 chr1 1524761 1526818 - 805298 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 1524761 | 1526818 | a | 0 | ... | +| chr1 | 1524761 | 1526818 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 1524761 1526818 - 6503 +1 chr1 1524761 1526818 - 805298 +df2 + Chromosome Start End Strand Distance +0 chr1 1524761 1526818 - 6503 +1 chr1 1524761 1526818 - 805298 +Actual + Chromosome Start End Strand Distance +0 chr1 1524761 1526818 - 6503 +1 chr1 1524761 1526818 - 805298 + +Expected + Chromosome Start End Strand Distance +0 chr1 1524761 1526818 - 6503 +1 chr1 1524761 1526818 - 805298 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=2, step=1) +Expected index +RangeIndex(start=0, stop=2, step=1) +index equal [ True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp315l40k6/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp315l40k6/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpsnh6zkcs/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpsnh6zkcs/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpjgigwfvd/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpjgigwfvd/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpnpyyvg5s/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpnpyyvg5s/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp8pv13w4w/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp8pv13w4w/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp_jqfjpeg/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp_jqfjpeg/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpu660f542/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpu660f542/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 5884404 5884831 + 2118323 +1 chr1 5884404 5884831 + 2771159 +2 chr1 5884404 5888405 + 2114749 +3 chr1 5884404 5888405 + 2767585 +5 chr1 5884404 5894217 + 2108937 +6 chr1 5884404 5894217 + 2761773 +7 chr12 1912487 1917287 + 1719063 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 5884404 | 5884831 | a | 0 | ... | +| chr1 | 5884404 | 5884831 | a | 0 | ... | +| chr1 | 5884404 | 5894217 | a | 0 | ... | +| chr1 | 5884404 | 5894217 | a | 0 | ... | +| chr1 | 5884404 | 5888405 | a | 0 | ... | +| chr1 | 5884404 | 5888405 | a | 0 | ... | +| chr12 | 1912487 | 1917287 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 7 rows and 12 columns from 2 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +6 chr12 1912487 1917287 + 1719063 +0 chr1 5884404 5884831 + 2118323 +1 chr1 5884404 5884831 + 2771159 +4 chr1 5884404 5888405 + 2114749 +5 chr1 5884404 5888405 + 2767585 +2 chr1 5884404 5894217 + 2108937 +3 chr1 5884404 5894217 + 2761773 +df2 + Chromosome Start End Strand Distance +7 chr12 1912487 1917287 + 1719063 +0 chr1 5884404 5884831 + 2118323 +1 chr1 5884404 5884831 + 2771159 +2 chr1 5884404 5888405 + 2114749 +3 chr1 5884404 5888405 + 2767585 +5 chr1 5884404 5894217 + 2108937 +6 chr1 5884404 5894217 + 2761773 +Actual + Chromosome Start End Strand Distance +0 chr1 5884404 5884831 + 2118323 +1 chr1 5884404 5884831 + 2771159 +2 chr1 5884404 5888405 + 2114749 +3 chr1 5884404 5888405 + 2767585 +4 chr1 5884404 5894217 + 2108937 +5 chr1 5884404 5894217 + 2761773 +6 chr12 1912487 1917287 + 1719063 + +Expected + Chromosome Start End Strand Distance +0 chr1 5884404 5884831 + 2118323 +1 chr1 5884404 5884831 + 2771159 +2 chr1 5884404 5888405 + 2114749 +3 chr1 5884404 5888405 + 2767585 +4 chr1 5884404 5894217 + 2108937 +5 chr1 5884404 5894217 + 2761773 +6 chr12 1912487 1917287 + 1719063 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=7, step=1) +Expected index +RangeIndex(start=0, stop=7, step=1) +index equal [ True True True True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpp33nzkpw/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpp33nzkpw/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 5884404 5884405 + 5884403 +1 chr1 5884404 5884405 + 5884403 +2 chr1 5884404 5884405 + 5884403 +3 chr1 5884404 5884409 - 5884403 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 5884404 | 5884405 | a | 0 | ... | +| chr1 | 5884404 | 5884405 | a | 0 | ... | +| chr1 | 5884404 | 5884405 | a | 0 | ... | +| chr1 | 5884404 | 5884409 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 4 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 5884404 5884405 + 5884403 +1 chr1 5884404 5884405 + 5884403 +2 chr1 5884404 5884405 + 5884403 +3 chr1 5884404 5884409 - 5884403 +df2 + Chromosome Start End Strand Distance +0 chr1 5884404 5884405 + 5884403 +1 chr1 5884404 5884405 + 5884403 +2 chr1 5884404 5884405 + 5884403 +3 chr1 5884404 5884409 - 5884403 +Actual + Chromosome Start End Strand Distance +0 chr1 5884404 5884405 + 5884403 +1 chr1 5884404 5884405 + 5884403 +2 chr1 5884404 5884405 + 5884403 +3 chr1 5884404 5884409 - 5884403 + +Expected + Chromosome Start End Strand Distance +0 chr1 5884404 5884405 + 5884403 +1 chr1 5884404 5884405 + 5884403 +2 chr1 5884404 5884405 + 5884403 +3 chr1 5884404 5884409 - 5884403 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=4, step=1) +Expected index +RangeIndex(start=0, stop=4, step=1) +index equal [ True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp7gvcfz8m/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp7gvcfz8m/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp0tskq64_/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp0tskq64_/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpdx5nhi9m/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpdx5nhi9m/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpambri91i/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpambri91i/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpblgutmzo/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpblgutmzo/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpud01vya7/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpud01vya7/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 920267 927082 - 2691821 +1 chr1 920267 927082 - 4347554 +2 chr1 4310882 4315052 + 624093 +3 chr1 4310882 4315052 + 2598439 +4 chr1 4986162 4996162 + 1299373 +5 chr1 4986162 4996162 + 3273719 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 4310882 | 4315052 | a | 0 | ... | +| chr1 | 4310882 | 4315052 | a | 0 | ... | +| chr1 | 4986162 | 4996162 | a | 0 | ... | +| chr1 | 4986162 | 4996162 | a | 0 | ... | +| chr1 | 920267 | 927082 | a | 0 | ... | +| chr1 | 920267 | 927082 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 6 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +4 chr1 920267 927082 - 2691821 +5 chr1 920267 927082 - 4347554 +0 chr1 4310882 4315052 + 624093 +1 chr1 4310882 4315052 + 2598439 +2 chr1 4986162 4996162 + 1299373 +3 chr1 4986162 4996162 + 3273719 +df2 + Chromosome Start End Strand Distance +0 chr1 920267 927082 - 2691821 +1 chr1 920267 927082 - 4347554 +2 chr1 4310882 4315052 + 624093 +3 chr1 4310882 4315052 + 2598439 +4 chr1 4986162 4996162 + 1299373 +5 chr1 4986162 4996162 + 3273719 +Actual + Chromosome Start End Strand Distance +0 chr1 920267 927082 - 2691821 +1 chr1 920267 927082 - 4347554 +2 chr1 4310882 4315052 + 624093 +3 chr1 4310882 4315052 + 2598439 +4 chr1 4986162 4996162 + 1299373 +5 chr1 4986162 4996162 + 3273719 + +Expected + Chromosome Start End Strand Distance +0 chr1 920267 927082 - 2691821 +1 chr1 920267 927082 - 4347554 +2 chr1 4310882 4315052 + 624093 +3 chr1 4310882 4315052 + 2598439 +4 chr1 4986162 4996162 + 1299373 +5 chr1 4986162 4996162 + 3273719 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=6, step=1) +Expected index +RangeIndex(start=0, stop=6, step=1) +index equal [ True True True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpsdhopeiq/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpsdhopeiq/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 920267 927082 - 2691821 +1 chr1 920267 927082 - 4347554 +2 chr1 4310882 4315052 + 624093 +3 chr1 4310882 4315052 + 2598439 +4 chr1 4986162 4996162 + 1299373 +5 chr1 4986162 4996162 + 3273719 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 4310882 | 4315052 | a | 0 | ... | +| chr1 | 4310882 | 4315052 | a | 0 | ... | +| chr1 | 4986162 | 4996162 | a | 0 | ... | +| chr1 | 4986162 | 4996162 | a | 0 | ... | +| chr1 | 920267 | 927082 | a | 0 | ... | +| chr1 | 920267 | 927082 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 6 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +4 chr1 920267 927082 - 2691821 +5 chr1 920267 927082 - 4347554 +0 chr1 4310882 4315052 + 624093 +1 chr1 4310882 4315052 + 2598439 +2 chr1 4986162 4996162 + 1299373 +3 chr1 4986162 4996162 + 3273719 +df2 + Chromosome Start End Strand Distance +0 chr1 920267 927082 - 2691821 +1 chr1 920267 927082 - 4347554 +2 chr1 4310882 4315052 + 624093 +3 chr1 4310882 4315052 + 2598439 +4 chr1 4986162 4996162 + 1299373 +5 chr1 4986162 4996162 + 3273719 +Actual + Chromosome Start End Strand Distance +0 chr1 920267 927082 - 2691821 +1 chr1 920267 927082 - 4347554 +2 chr1 4310882 4315052 + 624093 +3 chr1 4310882 4315052 + 2598439 +4 chr1 4986162 4996162 + 1299373 +5 chr1 4986162 4996162 + 3273719 + +Expected + Chromosome Start End Strand Distance +0 chr1 920267 927082 - 2691821 +1 chr1 920267 927082 - 4347554 +2 chr1 4310882 4315052 + 624093 +3 chr1 4310882 4315052 + 2598439 +4 chr1 4986162 4996162 + 1299373 +5 chr1 4986162 4996162 + 3273719 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=6, step=1) +Expected index +RangeIndex(start=0, stop=6, step=1) +index equal [ True True True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpop1kmcik/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpop1kmcik/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 920267 920268 - 912715 +1 chr1 4310882 4310883 - 4303330 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 4310882 | 4310883 | a | 0 | ... | +| chr1 | 920267 | 920268 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +1 chr1 920267 920268 - 912715 +0 chr1 4310882 4310883 - 4303330 +df2 + Chromosome Start End Strand Distance +0 chr1 920267 920268 - 912715 +1 chr1 4310882 4310883 - 4303330 +Actual + Chromosome Start End Strand Distance +0 chr1 920267 920268 - 912715 +1 chr1 4310882 4310883 - 4303330 + +Expected + Chromosome Start End Strand Distance +0 chr1 920267 920268 - 912715 +1 chr1 4310882 4310883 - 4303330 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=2, step=1) +Expected index +RangeIndex(start=0, stop=2, step=1) +index equal [ True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpe8apoul8/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpe8apoul8/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 920267 920268 - 912715 +1 chr1 4310882 4310883 - 4303330 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 4310882 | 4310883 | a | 0 | ... | +| chr1 | 920267 | 920268 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +1 chr1 920267 920268 - 912715 +0 chr1 4310882 4310883 - 4303330 +df2 + Chromosome Start End Strand Distance +0 chr1 920267 920268 - 912715 +1 chr1 4310882 4310883 - 4303330 +Actual + Chromosome Start End Strand Distance +0 chr1 920267 920268 - 912715 +1 chr1 4310882 4310883 - 4303330 + +Expected + Chromosome Start End Strand Distance +0 chr1 920267 920268 - 912715 +1 chr1 4310882 4310883 - 4303330 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=2, step=1) +Expected index +RangeIndex(start=0, stop=2, step=1) +index equal [ True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp103y2_fu/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp103y2_fu/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp3b94sfzm/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp3b94sfzm/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp3mqx71av/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp3mqx71av/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpu3ic066s/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpu3ic066s/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 2355960 2356773 + 328943 +1 chr1 2355960 2356773 + 2758573 +2 chr1 2918772 2918986 + 231872 +3 chr1 2918772 2918986 + 2196360 +4 chr1 8010921 8019112 + 1224249 +5 chr1 8010921 8019112 + 2893957 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 2355960 | 2356773 | a | 0 | ... | +| chr1 | 2355960 | 2356773 | a | 0 | ... | +| chr1 | 8010921 | 8019112 | a | 0 | ... | +| chr1 | 8010921 | 8019112 | a | 0 | ... | +| chr1 | 2918772 | 2918986 | a | 0 | ... | +| chr1 | 2918772 | 2918986 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 6 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 2355960 2356773 + 328943 +1 chr1 2355960 2356773 + 2758573 +4 chr1 2918772 2918986 + 231872 +5 chr1 2918772 2918986 + 2196360 +2 chr1 8010921 8019112 + 1224249 +3 chr1 8010921 8019112 + 2893957 +df2 + Chromosome Start End Strand Distance +0 chr1 2355960 2356773 + 328943 +1 chr1 2355960 2356773 + 2758573 +2 chr1 2918772 2918986 + 231872 +3 chr1 2918772 2918986 + 2196360 +4 chr1 8010921 8019112 + 1224249 +5 chr1 8010921 8019112 + 2893957 +Actual + Chromosome Start End Strand Distance +0 chr1 2355960 2356773 + 328943 +1 chr1 2355960 2356773 + 2758573 +2 chr1 2918772 2918986 + 231872 +3 chr1 2918772 2918986 + 2196360 +4 chr1 8010921 8019112 + 1224249 +5 chr1 8010921 8019112 + 2893957 + +Expected + Chromosome Start End Strand Distance +0 chr1 2355960 2356773 + 328943 +1 chr1 2355960 2356773 + 2758573 +2 chr1 2918772 2918986 + 231872 +3 chr1 2918772 2918986 + 2196360 +4 chr1 8010921 8019112 + 1224249 +5 chr1 8010921 8019112 + 2893957 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=6, step=1) +Expected index +RangeIndex(start=0, stop=6, step=1) +index equal [ True True True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp6____zy8/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp6____zy8/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 2355960 2356773 + 2355959 +1 chr1 2355960 2356773 + 5461230 +2 chr1 2918772 2918986 + 2918771 +3 chr1 2918772 2918986 + 4899017 +4 chr1 8010921 8019112 + 192919 +5 chr1 8010921 8019112 + 8010920 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 2355960 | 2356773 | a | 0 | ... | +| chr1 | 2355960 | 2356773 | a | 0 | ... | +| chr1 | 8010921 | 8019112 | a | 0 | ... | +| chr1 | 8010921 | 8019112 | a | 0 | ... | +| chr1 | 2918772 | 2918986 | a | 0 | ... | +| chr1 | 2918772 | 2918986 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 6 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 2355960 2356773 + 2355959 +1 chr1 2355960 2356773 + 5461230 +4 chr1 2918772 2918986 + 2918771 +5 chr1 2918772 2918986 + 4899017 +2 chr1 8010921 8019112 + 192919 +3 chr1 8010921 8019112 + 8010920 +df2 + Chromosome Start End Strand Distance +0 chr1 2355960 2356773 + 2355959 +1 chr1 2355960 2356773 + 5461230 +2 chr1 2918772 2918986 + 2918771 +3 chr1 2918772 2918986 + 4899017 +4 chr1 8010921 8019112 + 192919 +5 chr1 8010921 8019112 + 8010920 +Actual + Chromosome Start End Strand Distance +0 chr1 2355960 2356773 + 2355959 +1 chr1 2355960 2356773 + 5461230 +2 chr1 2918772 2918986 + 2918771 +3 chr1 2918772 2918986 + 4899017 +4 chr1 8010921 8019112 + 192919 +5 chr1 8010921 8019112 + 8010920 + +Expected + Chromosome Start End Strand Distance +0 chr1 2355960 2356773 + 2355959 +1 chr1 2355960 2356773 + 5461230 +2 chr1 2918772 2918986 + 2918771 +3 chr1 2918772 2918986 + 4899017 +4 chr1 8010921 8019112 + 192919 +5 chr1 8010921 8019112 + 8010920 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=6, step=1) +Expected index +RangeIndex(start=0, stop=6, step=1) +index equal [ True True True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpiaoqextp/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpiaoqextp/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 2355960 2356773 + 2355959 +1 chr1 2355960 2356773 + 5461230 +2 chr1 2918772 2918986 + 2918771 +3 chr1 2918772 2918986 + 4899017 +4 chr1 8010921 8019112 + 192919 +5 chr1 8010921 8019112 + 8010920 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 2355960 | 2356773 | a | 0 | ... | +| chr1 | 2355960 | 2356773 | a | 0 | ... | +| chr1 | 8010921 | 8019112 | a | 0 | ... | +| chr1 | 8010921 | 8019112 | a | 0 | ... | +| chr1 | 2918772 | 2918986 | a | 0 | ... | +| chr1 | 2918772 | 2918986 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 6 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 2355960 2356773 + 2355959 +1 chr1 2355960 2356773 + 5461230 +4 chr1 2918772 2918986 + 2918771 +5 chr1 2918772 2918986 + 4899017 +2 chr1 8010921 8019112 + 192919 +3 chr1 8010921 8019112 + 8010920 +df2 + Chromosome Start End Strand Distance +0 chr1 2355960 2356773 + 2355959 +1 chr1 2355960 2356773 + 5461230 +2 chr1 2918772 2918986 + 2918771 +3 chr1 2918772 2918986 + 4899017 +4 chr1 8010921 8019112 + 192919 +5 chr1 8010921 8019112 + 8010920 +Actual + Chromosome Start End Strand Distance +0 chr1 2355960 2356773 + 2355959 +1 chr1 2355960 2356773 + 5461230 +2 chr1 2918772 2918986 + 2918771 +3 chr1 2918772 2918986 + 4899017 +4 chr1 8010921 8019112 + 192919 +5 chr1 8010921 8019112 + 8010920 + +Expected + Chromosome Start End Strand Distance +0 chr1 2355960 2356773 + 2355959 +1 chr1 2355960 2356773 + 5461230 +2 chr1 2918772 2918986 + 2918771 +3 chr1 2918772 2918986 + 4899017 +4 chr1 8010921 8019112 + 192919 +5 chr1 8010921 8019112 + 8010920 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=6, step=1) +Expected index +RangeIndex(start=0, stop=6, step=1) +index equal [ True True True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpvzripv22/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpvzripv22/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 2355960 2356773 + 2355959 +1 chr1 2355960 2356773 + 5461230 +2 chr1 2918772 2918986 + 2918771 +3 chr1 2918772 2918986 + 4899017 +4 chr1 8010921 8019112 + 192919 +5 chr1 8010921 8019112 + 8010920 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 2355960 | 2356773 | a | 0 | ... | +| chr1 | 2355960 | 2356773 | a | 0 | ... | +| chr1 | 8010921 | 8019112 | a | 0 | ... | +| chr1 | 8010921 | 8019112 | a | 0 | ... | +| chr1 | 2918772 | 2918986 | a | 0 | ... | +| chr1 | 2918772 | 2918986 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 6 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 2355960 2356773 + 2355959 +1 chr1 2355960 2356773 + 5461230 +4 chr1 2918772 2918986 + 2918771 +5 chr1 2918772 2918986 + 4899017 +2 chr1 8010921 8019112 + 192919 +3 chr1 8010921 8019112 + 8010920 +df2 + Chromosome Start End Strand Distance +0 chr1 2355960 2356773 + 2355959 +1 chr1 2355960 2356773 + 5461230 +2 chr1 2918772 2918986 + 2918771 +3 chr1 2918772 2918986 + 4899017 +4 chr1 8010921 8019112 + 192919 +5 chr1 8010921 8019112 + 8010920 +Actual + Chromosome Start End Strand Distance +0 chr1 2355960 2356773 + 2355959 +1 chr1 2355960 2356773 + 5461230 +2 chr1 2918772 2918986 + 2918771 +3 chr1 2918772 2918986 + 4899017 +4 chr1 8010921 8019112 + 192919 +5 chr1 8010921 8019112 + 8010920 + +Expected + Chromosome Start End Strand Distance +0 chr1 2355960 2356773 + 2355959 +1 chr1 2355960 2356773 + 5461230 +2 chr1 2918772 2918986 + 2918771 +3 chr1 2918772 2918986 + 4899017 +4 chr1 8010921 8019112 + 192919 +5 chr1 8010921 8019112 + 8010920 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=6, step=1) +Expected index +RangeIndex(start=0, stop=6, step=1) +index equal [ True True True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmppwwad3qc/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmppwwad3qc/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 2355960 2365163 + 2355959 +1 chr1 2355960 2365163 + 5452840 +2 chr1 2918772 2918773 + 2918771 +3 chr1 2918772 2918773 + 4899230 +4 chr1 8010921 8010922 + 192919 +5 chr1 8010921 8010922 + 8010920 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 2355960 | 2365163 | a | 0 | ... | +| chr1 | 2355960 | 2365163 | a | 0 | ... | +| chr1 | 8010921 | 8010922 | a | 0 | ... | +| chr1 | 8010921 | 8010922 | a | 0 | ... | +| chr1 | 2918772 | 2918773 | a | 0 | ... | +| chr1 | 2918772 | 2918773 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 6 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 2355960 2365163 + 2355959 +1 chr1 2355960 2365163 + 5452840 +4 chr1 2918772 2918773 + 2918771 +5 chr1 2918772 2918773 + 4899230 +2 chr1 8010921 8010922 + 192919 +3 chr1 8010921 8010922 + 8010920 +df2 + Chromosome Start End Strand Distance +0 chr1 2355960 2365163 + 2355959 +1 chr1 2355960 2365163 + 5452840 +2 chr1 2918772 2918773 + 2918771 +3 chr1 2918772 2918773 + 4899230 +4 chr1 8010921 8010922 + 192919 +5 chr1 8010921 8010922 + 8010920 +Actual + Chromosome Start End Strand Distance +0 chr1 2355960 2365163 + 2355959 +1 chr1 2355960 2365163 + 5452840 +2 chr1 2918772 2918773 + 2918771 +3 chr1 2918772 2918773 + 4899230 +4 chr1 8010921 8010922 + 192919 +5 chr1 8010921 8010922 + 8010920 + +Expected + Chromosome Start End Strand Distance +0 chr1 2355960 2365163 + 2355959 +1 chr1 2355960 2365163 + 5452840 +2 chr1 2918772 2918773 + 2918771 +3 chr1 2918772 2918773 + 4899230 +4 chr1 8010921 8010922 + 192919 +5 chr1 8010921 8010922 + 8010920 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=6, step=1) +Expected index +RangeIndex(start=0, stop=6, step=1) +index equal [ True True True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpyu86w895/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpyu86w895/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 2355960 2365163 + 2355959 +1 chr1 2355960 2365163 + 5452840 +2 chr1 2918772 2918773 + 2918771 +3 chr1 2918772 2918773 + 4899230 +4 chr1 8010921 8010922 + 192919 +5 chr1 8010921 8010922 + 8010920 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 2355960 | 2365163 | a | 0 | ... | +| chr1 | 2355960 | 2365163 | a | 0 | ... | +| chr1 | 8010921 | 8010922 | a | 0 | ... | +| chr1 | 8010921 | 8010922 | a | 0 | ... | +| chr1 | 2918772 | 2918773 | a | 0 | ... | +| chr1 | 2918772 | 2918773 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 6 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 2355960 2365163 + 2355959 +1 chr1 2355960 2365163 + 5452840 +4 chr1 2918772 2918773 + 2918771 +5 chr1 2918772 2918773 + 4899230 +2 chr1 8010921 8010922 + 192919 +3 chr1 8010921 8010922 + 8010920 +df2 + Chromosome Start End Strand Distance +0 chr1 2355960 2365163 + 2355959 +1 chr1 2355960 2365163 + 5452840 +2 chr1 2918772 2918773 + 2918771 +3 chr1 2918772 2918773 + 4899230 +4 chr1 8010921 8010922 + 192919 +5 chr1 8010921 8010922 + 8010920 +Actual + Chromosome Start End Strand Distance +0 chr1 2355960 2365163 + 2355959 +1 chr1 2355960 2365163 + 5452840 +2 chr1 2918772 2918773 + 2918771 +3 chr1 2918772 2918773 + 4899230 +4 chr1 8010921 8010922 + 192919 +5 chr1 8010921 8010922 + 8010920 + +Expected + Chromosome Start End Strand Distance +0 chr1 2355960 2365163 + 2355959 +1 chr1 2355960 2365163 + 5452840 +2 chr1 2918772 2918773 + 2918771 +3 chr1 2918772 2918773 + 4899230 +4 chr1 8010921 8010922 + 192919 +5 chr1 8010921 8010922 + 8010920 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=6, step=1) +Expected index +RangeIndex(start=0, stop=6, step=1) +index equal [ True True True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpn3l_j0wz/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpn3l_j0wz/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 2355960 2365163 + 2355959 +1 chr1 2355960 2365163 + 5452840 +2 chr1 2918772 2918773 + 2918771 +3 chr1 2918772 2918773 + 4899230 +4 chr1 8010921 8010922 + 192919 +5 chr1 8010921 8010922 + 8010920 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 2355960 | 2365163 | a | 0 | ... | +| chr1 | 2355960 | 2365163 | a | 0 | ... | +| chr1 | 8010921 | 8010922 | a | 0 | ... | +| chr1 | 8010921 | 8010922 | a | 0 | ... | +| chr1 | 2918772 | 2918773 | a | 0 | ... | +| chr1 | 2918772 | 2918773 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 6 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 2355960 2365163 + 2355959 +1 chr1 2355960 2365163 + 5452840 +4 chr1 2918772 2918773 + 2918771 +5 chr1 2918772 2918773 + 4899230 +2 chr1 8010921 8010922 + 192919 +3 chr1 8010921 8010922 + 8010920 +df2 + Chromosome Start End Strand Distance +0 chr1 2355960 2365163 + 2355959 +1 chr1 2355960 2365163 + 5452840 +2 chr1 2918772 2918773 + 2918771 +3 chr1 2918772 2918773 + 4899230 +4 chr1 8010921 8010922 + 192919 +5 chr1 8010921 8010922 + 8010920 +Actual + Chromosome Start End Strand Distance +0 chr1 2355960 2365163 + 2355959 +1 chr1 2355960 2365163 + 5452840 +2 chr1 2918772 2918773 + 2918771 +3 chr1 2918772 2918773 + 4899230 +4 chr1 8010921 8010922 + 192919 +5 chr1 8010921 8010922 + 8010920 + +Expected + Chromosome Start End Strand Distance +0 chr1 2355960 2365163 + 2355959 +1 chr1 2355960 2365163 + 5452840 +2 chr1 2918772 2918773 + 2918771 +3 chr1 2918772 2918773 + 4899230 +4 chr1 8010921 8010922 + 192919 +5 chr1 8010921 8010922 + 8010920 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=6, step=1) +Expected index +RangeIndex(start=0, stop=6, step=1) +index equal [ True True True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmppdwzbbru/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmppdwzbbru/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 7414560 7414590 - 44037 +1 chr1 7414560 7414590 - 1280845 +2 chr1 9406135 9411523 - 267348 +3 chr1 9406135 9411523 - 394810 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 9406135 | 9411523 | a | 0 | ... | +| chr1 | 9406135 | 9411523 | a | 0 | ... | +| chr1 | 7414560 | 7414590 | a | 0 | ... | +| chr1 | 7414560 | 7414590 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 4 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +2 chr1 7414560 7414590 - 44037 +3 chr1 7414560 7414590 - 1280845 +0 chr1 9406135 9411523 - 267348 +1 chr1 9406135 9411523 - 394810 +df2 + Chromosome Start End Strand Distance +0 chr1 7414560 7414590 - 44037 +1 chr1 7414560 7414590 - 1280845 +2 chr1 9406135 9411523 - 267348 +3 chr1 9406135 9411523 - 394810 +Actual + Chromosome Start End Strand Distance +0 chr1 7414560 7414590 - 44037 +1 chr1 7414560 7414590 - 1280845 +2 chr1 9406135 9411523 - 267348 +3 chr1 9406135 9411523 - 394810 + +Expected + Chromosome Start End Strand Distance +0 chr1 7414560 7414590 - 44037 +1 chr1 7414560 7414590 - 1280845 +2 chr1 9406135 9411523 - 267348 +3 chr1 9406135 9411523 - 394810 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=4, step=1) +Expected index +RangeIndex(start=0, stop=4, step=1) +index equal [ True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp_8zibikv/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp_8zibikv/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp4n0wbb4d/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp4n0wbb4d/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpgb1uc5fs/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpgb1uc5fs/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmprh3430ea/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmprh3430ea/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpukn6aaa1/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpukn6aaa1/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpoqoy_oqw/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpoqoy_oqw/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpb48ac0qd/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpb48ac0qd/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 1288357 1295021 - 6345443 +1 chr1 1288357 1295021 - 7052290 +2 chr1 3334810 3340505 + 930977 +3 chr1 3334810 3340505 + 1944706 +4 chr18 3334810 3343222 - 670336 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 3334810 | 3340505 | a | 0 | ... | +| chr1 | 3334810 | 3340505 | a | 0 | ... | +| chr1 | 1288357 | 1295021 | a | 0 | ... | +| chr1 | 1288357 | 1295021 | a | 0 | ... | +| chr18 | 3334810 | 3343222 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 5 rows and 12 columns from 2 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +2 chr1 1288357 1295021 - 6345443 +3 chr1 1288357 1295021 - 7052290 +0 chr1 3334810 3340505 + 930977 +1 chr1 3334810 3340505 + 1944706 +4 chr18 3334810 3343222 - 670336 +df2 + Chromosome Start End Strand Distance +0 chr1 1288357 1295021 - 6345443 +1 chr1 1288357 1295021 - 7052290 +2 chr1 3334810 3340505 + 930977 +3 chr1 3334810 3340505 + 1944706 +4 chr18 3334810 3343222 - 670336 +Actual + Chromosome Start End Strand Distance +0 chr1 1288357 1295021 - 6345443 +1 chr1 1288357 1295021 - 7052290 +2 chr1 3334810 3340505 + 930977 +3 chr1 3334810 3340505 + 1944706 +4 chr18 3334810 3343222 - 670336 + +Expected + Chromosome Start End Strand Distance +0 chr1 1288357 1295021 - 6345443 +1 chr1 1288357 1295021 - 7052290 +2 chr1 3334810 3340505 + 930977 +3 chr1 3334810 3340505 + 1944706 +4 chr18 3334810 3343222 - 670336 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=5, step=1) +Expected index +RangeIndex(start=0, stop=5, step=1) +index equal [ True True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpmiv5ab1d/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpmiv5ab1d/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +1 chr1 3334810 3340505 + 3334792 +2 chr1 3334810 3340505 + 3334809 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 3334810 | 3340505 | a | 0 | ... | +| chr1 | 3334810 | 3340505 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 3334810 3340505 + 3334792 +1 chr1 3334810 3340505 + 3334809 +df2 + Chromosome Start End Strand Distance +1 chr1 3334810 3340505 + 3334792 +2 chr1 3334810 3340505 + 3334809 +Actual + Chromosome Start End Strand Distance +0 chr1 3334810 3340505 + 3334792 +1 chr1 3334810 3340505 + 3334809 + +Expected + Chromosome Start End Strand Distance +0 chr1 3334810 3340505 + 3334792 +1 chr1 3334810 3340505 + 3334809 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=2, step=1) +Expected index +RangeIndex(start=0, stop=2, step=1) +index equal [ True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpirv6k4hk/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpirv6k4hk/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +1 chr1 3334810 3340505 + 3334792 +2 chr1 3334810 3340505 + 3334809 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 3334810 | 3340505 | a | 0 | ... | +| chr1 | 3334810 | 3340505 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 3334810 3340505 + 3334792 +1 chr1 3334810 3340505 + 3334809 +df2 + Chromosome Start End Strand Distance +1 chr1 3334810 3340505 + 3334792 +2 chr1 3334810 3340505 + 3334809 +Actual + Chromosome Start End Strand Distance +0 chr1 3334810 3340505 + 3334792 +1 chr1 3334810 3340505 + 3334809 + +Expected + Chromosome Start End Strand Distance +0 chr1 3334810 3340505 + 3334792 +1 chr1 3334810 3340505 + 3334809 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=2, step=1) +Expected index +RangeIndex(start=0, stop=2, step=1) +index equal [ True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp4uvbsj5i/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp4uvbsj5i/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +1 chr1 3334810 3340505 + 3334792 +2 chr1 3334810 3340505 + 3334809 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 3334810 | 3340505 | a | 0 | ... | +| chr1 | 3334810 | 3340505 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 3334810 3340505 + 3334792 +1 chr1 3334810 3340505 + 3334809 +df2 + Chromosome Start End Strand Distance +1 chr1 3334810 3340505 + 3334792 +2 chr1 3334810 3340505 + 3334809 +Actual + Chromosome Start End Strand Distance +0 chr1 3334810 3340505 + 3334792 +1 chr1 3334810 3340505 + 3334809 + +Expected + Chromosome Start End Strand Distance +0 chr1 3334810 3340505 + 3334792 +1 chr1 3334810 3340505 + 3334809 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=2, step=1) +Expected index +RangeIndex(start=0, stop=2, step=1) +index equal [ True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp4t0cgyrl/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp4t0cgyrl/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp2xv3hewc/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp2xv3hewc/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpup517cuj/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpup517cuj/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpjimgeex9/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpjimgeex9/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 2925585 2930845 + 1652598 +1 chr1 2925585 2930845 + 2373172 +2 chr1 5713822 5713897 + 413459 +3 chr1 5713822 5713897 + 2701116 +4 chr1 7763598 7765790 + 649223 +5 chr1 7763598 7765790 + 1635284 +6 chr1 9000194 9000873 + 584166 +7 chr1 9000194 9000873 + 2871880 +8 chr1 9000194 9006175 + 584166 +9 chr1 9000194 9006175 + 2871880 +10 chr1 9000194 9007662 - 8994317 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 9000194 | 9006175 | a | 0 | ... | +| chr1 | 9000194 | 9006175 | a | 0 | ... | +| chr1 | 2925585 | 2930845 | a | 0 | ... | +| chr1 | 2925585 | 2930845 | a | 0 | ... | +| ... | ... | ... | ... | ... | ... | +| chr1 | 5713822 | 5713897 | a | 0 | ... | +| chr1 | 9000194 | 9000873 | a | 0 | ... | +| chr1 | 9000194 | 9000873 | a | 0 | ... | +| chr1 | 9000194 | 9007662 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 11 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +2 chr1 2925585 2930845 + 1652598 +3 chr1 2925585 2930845 + 2373172 +6 chr1 5713822 5713897 + 413459 +7 chr1 5713822 5713897 + 2701116 +4 chr1 7763598 7765790 + 649223 +5 chr1 7763598 7765790 + 1635284 +8 chr1 9000194 9000873 + 584166 +9 chr1 9000194 9000873 + 2871880 +0 chr1 9000194 9006175 + 584166 +1 chr1 9000194 9006175 + 2871880 +10 chr1 9000194 9007662 - 8994317 +df2 + Chromosome Start End Strand Distance +0 chr1 2925585 2930845 + 1652598 +1 chr1 2925585 2930845 + 2373172 +2 chr1 5713822 5713897 + 413459 +3 chr1 5713822 5713897 + 2701116 +4 chr1 7763598 7765790 + 649223 +5 chr1 7763598 7765790 + 1635284 +6 chr1 9000194 9000873 + 584166 +7 chr1 9000194 9000873 + 2871880 +8 chr1 9000194 9006175 + 584166 +9 chr1 9000194 9006175 + 2871880 +10 chr1 9000194 9007662 - 8994317 +Actual + Chromosome Start End Strand Distance +0 chr1 2925585 2930845 + 1652598 +1 chr1 2925585 2930845 + 2373172 +2 chr1 5713822 5713897 + 413459 +3 chr1 5713822 5713897 + 2701116 +4 chr1 7763598 7765790 + 649223 +5 chr1 7763598 7765790 + 1635284 +6 chr1 9000194 9000873 + 584166 +7 chr1 9000194 9000873 + 2871880 +8 chr1 9000194 9006175 + 584166 +9 chr1 9000194 9006175 + 2871880 +10 chr1 9000194 9007662 - 8994317 + +Expected + Chromosome Start End Strand Distance +0 chr1 2925585 2930845 + 1652598 +1 chr1 2925585 2930845 + 2373172 +2 chr1 5713822 5713897 + 413459 +3 chr1 5713822 5713897 + 2701116 +4 chr1 7763598 7765790 + 649223 +5 chr1 7763598 7765790 + 1635284 +6 chr1 9000194 9000873 + 584166 +7 chr1 9000194 9000873 + 2871880 +8 chr1 9000194 9006175 + 584166 +9 chr1 9000194 9006175 + 2871880 +10 chr1 9000194 9007662 - 8994317 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=11, step=1) +Expected index +RangeIndex(start=0, stop=11, step=1) +index equal [ True True True True True True True True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpjj96lhdl/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpjj96lhdl/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 1 5878 + 544776 +1 chr1 1 5878 + 1260933 +2 chr1 550653 552414 - 544776 +3 chr1 1266810 1272988 - 1260933 +4 chr1 6127355 6128315 - 6121478 +5 chr1 8415012 8416029 - 8409135 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 1 | 5878 | a | 0 | ... | +| chr1 | 1 | 5878 | a | 0 | ... | +| chr1 | 8415012 | 8416029 | a | 0 | ... | +| chr1 | 1266810 | 1272988 | a | 0 | ... | +| chr1 | 550653 | 552414 | a | 0 | ... | +| chr1 | 6127355 | 6128315 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 6 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 1 5878 + 544776 +1 chr1 1 5878 + 1260933 +4 chr1 550653 552414 - 544776 +3 chr1 1266810 1272988 - 1260933 +5 chr1 6127355 6128315 - 6121478 +2 chr1 8415012 8416029 - 8409135 +df2 + Chromosome Start End Strand Distance +0 chr1 1 5878 + 544776 +1 chr1 1 5878 + 1260933 +2 chr1 550653 552414 - 544776 +3 chr1 1266810 1272988 - 1260933 +4 chr1 6127355 6128315 - 6121478 +5 chr1 8415012 8416029 - 8409135 +Actual + Chromosome Start End Strand Distance +0 chr1 1 5878 + 544776 +1 chr1 1 5878 + 1260933 +2 chr1 550653 552414 - 544776 +3 chr1 1266810 1272988 - 1260933 +4 chr1 6127355 6128315 - 6121478 +5 chr1 8415012 8416029 - 8409135 + +Expected + Chromosome Start End Strand Distance +0 chr1 1 5878 + 544776 +1 chr1 1 5878 + 1260933 +2 chr1 550653 552414 - 544776 +3 chr1 1266810 1272988 - 1260933 +4 chr1 6127355 6128315 - 6121478 +5 chr1 8415012 8416029 - 8409135 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=6, step=1) +Expected index +RangeIndex(start=0, stop=6, step=1) +index equal [ True True True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpaocfnuvn/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpaocfnuvn/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 1 5878 + 544776 +1 chr1 1 5878 + 1260933 +2 chr1 550653 552414 - 544776 +3 chr1 1266810 1272988 - 1260933 +4 chr1 6127355 6128315 - 6121478 +5 chr1 8415012 8416029 - 8409135 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 1 | 5878 | a | 0 | ... | +| chr1 | 1 | 5878 | a | 0 | ... | +| chr1 | 8415012 | 8416029 | a | 0 | ... | +| chr1 | 1266810 | 1272988 | a | 0 | ... | +| chr1 | 550653 | 552414 | a | 0 | ... | +| chr1 | 6127355 | 6128315 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 6 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 1 5878 + 544776 +1 chr1 1 5878 + 1260933 +4 chr1 550653 552414 - 544776 +3 chr1 1266810 1272988 - 1260933 +5 chr1 6127355 6128315 - 6121478 +2 chr1 8415012 8416029 - 8409135 +df2 + Chromosome Start End Strand Distance +0 chr1 1 5878 + 544776 +1 chr1 1 5878 + 1260933 +2 chr1 550653 552414 - 544776 +3 chr1 1266810 1272988 - 1260933 +4 chr1 6127355 6128315 - 6121478 +5 chr1 8415012 8416029 - 8409135 +Actual + Chromosome Start End Strand Distance +0 chr1 1 5878 + 544776 +1 chr1 1 5878 + 1260933 +2 chr1 550653 552414 - 544776 +3 chr1 1266810 1272988 - 1260933 +4 chr1 6127355 6128315 - 6121478 +5 chr1 8415012 8416029 - 8409135 + +Expected + Chromosome Start End Strand Distance +0 chr1 1 5878 + 544776 +1 chr1 1 5878 + 1260933 +2 chr1 550653 552414 - 544776 +3 chr1 1266810 1272988 - 1260933 +4 chr1 6127355 6128315 - 6121478 +5 chr1 8415012 8416029 - 8409135 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=6, step=1) +Expected index +RangeIndex(start=0, stop=6, step=1) +index equal [ True True True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp21fp1jdy/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp21fp1jdy/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +1 chr1 550653 552414 - 550636 +2 chr1 550653 552414 - 550647 +3 chr1 1266810 1272988 - 1266793 +4 chr1 1266810 1272988 - 1266804 +5 chr1 6127355 6128315 - 6127338 +6 chr1 6127355 6128315 - 6127349 +7 chr1 8415012 8416029 - 8414995 +8 chr1 8415012 8416029 - 8415006 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 8415012 | 8416029 | a | 0 | ... | +| chr1 | 8415012 | 8416029 | a | 0 | ... | +| chr1 | 1266810 | 1272988 | a | 0 | ... | +| chr1 | 1266810 | 1272988 | a | 0 | ... | +| chr1 | 550653 | 552414 | a | 0 | ... | +| chr1 | 550653 | 552414 | a | 0 | ... | +| chr1 | 6127355 | 6128315 | a | 0 | ... | +| chr1 | 6127355 | 6128315 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 8 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +4 chr1 550653 552414 - 550636 +5 chr1 550653 552414 - 550647 +2 chr1 1266810 1272988 - 1266793 +3 chr1 1266810 1272988 - 1266804 +6 chr1 6127355 6128315 - 6127338 +7 chr1 6127355 6128315 - 6127349 +0 chr1 8415012 8416029 - 8414995 +1 chr1 8415012 8416029 - 8415006 +df2 + Chromosome Start End Strand Distance +1 chr1 550653 552414 - 550636 +2 chr1 550653 552414 - 550647 +3 chr1 1266810 1272988 - 1266793 +4 chr1 1266810 1272988 - 1266804 +5 chr1 6127355 6128315 - 6127338 +6 chr1 6127355 6128315 - 6127349 +7 chr1 8415012 8416029 - 8414995 +8 chr1 8415012 8416029 - 8415006 +Actual + Chromosome Start End Strand Distance +0 chr1 550653 552414 - 550636 +1 chr1 550653 552414 - 550647 +2 chr1 1266810 1272988 - 1266793 +3 chr1 1266810 1272988 - 1266804 +4 chr1 6127355 6128315 - 6127338 +5 chr1 6127355 6128315 - 6127349 +6 chr1 8415012 8416029 - 8414995 +7 chr1 8415012 8416029 - 8415006 + +Expected + Chromosome Start End Strand Distance +0 chr1 550653 552414 - 550636 +1 chr1 550653 552414 - 550647 +2 chr1 1266810 1272988 - 1266793 +3 chr1 1266810 1272988 - 1266804 +4 chr1 6127355 6128315 - 6127338 +5 chr1 6127355 6128315 - 6127349 +6 chr1 8415012 8416029 - 8414995 +7 chr1 8415012 8416029 - 8415006 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=8, step=1) +Expected index +RangeIndex(start=0, stop=8, step=1) +index equal [ True True True True True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpzestiyz1/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpzestiyz1/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +1 chr1 550653 552414 - 550636 +2 chr1 550653 552414 - 550647 +3 chr1 1266810 1272988 - 1266793 +4 chr1 1266810 1272988 - 1266804 +5 chr1 6127355 6128315 - 6127338 +6 chr1 6127355 6128315 - 6127349 +7 chr1 8415012 8416029 - 8414995 +8 chr1 8415012 8416029 - 8415006 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 8415012 | 8416029 | a | 0 | ... | +| chr1 | 8415012 | 8416029 | a | 0 | ... | +| chr1 | 1266810 | 1272988 | a | 0 | ... | +| chr1 | 1266810 | 1272988 | a | 0 | ... | +| chr1 | 550653 | 552414 | a | 0 | ... | +| chr1 | 550653 | 552414 | a | 0 | ... | +| chr1 | 6127355 | 6128315 | a | 0 | ... | +| chr1 | 6127355 | 6128315 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 8 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +4 chr1 550653 552414 - 550636 +5 chr1 550653 552414 - 550647 +2 chr1 1266810 1272988 - 1266793 +3 chr1 1266810 1272988 - 1266804 +6 chr1 6127355 6128315 - 6127338 +7 chr1 6127355 6128315 - 6127349 +0 chr1 8415012 8416029 - 8414995 +1 chr1 8415012 8416029 - 8415006 +df2 + Chromosome Start End Strand Distance +1 chr1 550653 552414 - 550636 +2 chr1 550653 552414 - 550647 +3 chr1 1266810 1272988 - 1266793 +4 chr1 1266810 1272988 - 1266804 +5 chr1 6127355 6128315 - 6127338 +6 chr1 6127355 6128315 - 6127349 +7 chr1 8415012 8416029 - 8414995 +8 chr1 8415012 8416029 - 8415006 +Actual + Chromosome Start End Strand Distance +0 chr1 550653 552414 - 550636 +1 chr1 550653 552414 - 550647 +2 chr1 1266810 1272988 - 1266793 +3 chr1 1266810 1272988 - 1266804 +4 chr1 6127355 6128315 - 6127338 +5 chr1 6127355 6128315 - 6127349 +6 chr1 8415012 8416029 - 8414995 +7 chr1 8415012 8416029 - 8415006 + +Expected + Chromosome Start End Strand Distance +0 chr1 550653 552414 - 550636 +1 chr1 550653 552414 - 550647 +2 chr1 1266810 1272988 - 1266793 +3 chr1 1266810 1272988 - 1266804 +4 chr1 6127355 6128315 - 6127338 +5 chr1 6127355 6128315 - 6127349 +6 chr1 8415012 8416029 - 8414995 +7 chr1 8415012 8416029 - 8415006 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=8, step=1) +Expected index +RangeIndex(start=0, stop=8, step=1) +index equal [ True True True True True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpsh1uxe3x/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpsh1uxe3x/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +1 chr1 550653 552414 - 550636 +2 chr1 550653 552414 - 550647 +3 chr1 1266810 1272988 - 1266793 +4 chr1 1266810 1272988 - 1266804 +5 chr1 6127355 6128315 - 6127338 +6 chr1 6127355 6128315 - 6127349 +7 chr1 8415012 8416029 - 8414995 +8 chr1 8415012 8416029 - 8415006 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 8415012 | 8416029 | a | 0 | ... | +| chr1 | 8415012 | 8416029 | a | 0 | ... | +| chr1 | 1266810 | 1272988 | a | 0 | ... | +| chr1 | 1266810 | 1272988 | a | 0 | ... | +| chr1 | 550653 | 552414 | a | 0 | ... | +| chr1 | 550653 | 552414 | a | 0 | ... | +| chr1 | 6127355 | 6128315 | a | 0 | ... | +| chr1 | 6127355 | 6128315 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 8 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +4 chr1 550653 552414 - 550636 +5 chr1 550653 552414 - 550647 +2 chr1 1266810 1272988 - 1266793 +3 chr1 1266810 1272988 - 1266804 +6 chr1 6127355 6128315 - 6127338 +7 chr1 6127355 6128315 - 6127349 +0 chr1 8415012 8416029 - 8414995 +1 chr1 8415012 8416029 - 8415006 +df2 + Chromosome Start End Strand Distance +1 chr1 550653 552414 - 550636 +2 chr1 550653 552414 - 550647 +3 chr1 1266810 1272988 - 1266793 +4 chr1 1266810 1272988 - 1266804 +5 chr1 6127355 6128315 - 6127338 +6 chr1 6127355 6128315 - 6127349 +7 chr1 8415012 8416029 - 8414995 +8 chr1 8415012 8416029 - 8415006 +Actual + Chromosome Start End Strand Distance +0 chr1 550653 552414 - 550636 +1 chr1 550653 552414 - 550647 +2 chr1 1266810 1272988 - 1266793 +3 chr1 1266810 1272988 - 1266804 +4 chr1 6127355 6128315 - 6127338 +5 chr1 6127355 6128315 - 6127349 +6 chr1 8415012 8416029 - 8414995 +7 chr1 8415012 8416029 - 8415006 + +Expected + Chromosome Start End Strand Distance +0 chr1 550653 552414 - 550636 +1 chr1 550653 552414 - 550647 +2 chr1 1266810 1272988 - 1266793 +3 chr1 1266810 1272988 - 1266804 +4 chr1 6127355 6128315 - 6127338 +5 chr1 6127355 6128315 - 6127349 +6 chr1 8415012 8416029 - 8414995 +7 chr1 8415012 8416029 - 8415006 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=8, step=1) +Expected index +RangeIndex(start=0, stop=8, step=1) +index equal [ True True True True True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp0iclam6c/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp0iclam6c/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +1 chr1 550653 552414 - 550636 +2 chr1 550653 552414 - 550647 +3 chr1 1266810 1272988 - 1266793 +4 chr1 1266810 1272988 - 1266804 +5 chr1 2077946 2087525 + 2077929 +6 chr1 6127355 6128315 - 6127338 +7 chr1 6127355 6128315 - 6127349 +8 chr1 8415012 8416029 - 8414995 +9 chr1 8415012 8416029 - 8415006 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 2077946 | 2087525 | a | 0 | ... | +| chr1 | 8415012 | 8416029 | a | 0 | ... | +| chr1 | 8415012 | 8416029 | a | 0 | ... | +| chr1 | 1266810 | 1272988 | a | 0 | ... | +| ... | ... | ... | ... | ... | ... | +| chr1 | 550653 | 552414 | a | 0 | ... | +| chr1 | 550653 | 552414 | a | 0 | ... | +| chr1 | 6127355 | 6128315 | a | 0 | ... | +| chr1 | 6127355 | 6128315 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 9 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +5 chr1 550653 552414 - 550636 +6 chr1 550653 552414 - 550647 +3 chr1 1266810 1272988 - 1266793 +4 chr1 1266810 1272988 - 1266804 +0 chr1 2077946 2087525 + 2077929 +7 chr1 6127355 6128315 - 6127338 +8 chr1 6127355 6128315 - 6127349 +1 chr1 8415012 8416029 - 8414995 +2 chr1 8415012 8416029 - 8415006 +df2 + Chromosome Start End Strand Distance +1 chr1 550653 552414 - 550636 +2 chr1 550653 552414 - 550647 +3 chr1 1266810 1272988 - 1266793 +4 chr1 1266810 1272988 - 1266804 +5 chr1 2077946 2087525 + 2077929 +6 chr1 6127355 6128315 - 6127338 +7 chr1 6127355 6128315 - 6127349 +8 chr1 8415012 8416029 - 8414995 +9 chr1 8415012 8416029 - 8415006 +Actual + Chromosome Start End Strand Distance +0 chr1 550653 552414 - 550636 +1 chr1 550653 552414 - 550647 +2 chr1 1266810 1272988 - 1266793 +3 chr1 1266810 1272988 - 1266804 +4 chr1 2077946 2087525 + 2077929 +5 chr1 6127355 6128315 - 6127338 +6 chr1 6127355 6128315 - 6127349 +7 chr1 8415012 8416029 - 8414995 +8 chr1 8415012 8416029 - 8415006 + +Expected + Chromosome Start End Strand Distance +0 chr1 550653 552414 - 550636 +1 chr1 550653 552414 - 550647 +2 chr1 1266810 1272988 - 1266793 +3 chr1 1266810 1272988 - 1266804 +4 chr1 2077946 2087525 + 2077929 +5 chr1 6127355 6128315 - 6127338 +6 chr1 6127355 6128315 - 6127349 +7 chr1 8415012 8416029 - 8414995 +8 chr1 8415012 8416029 - 8415006 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=9, step=1) +Expected index +RangeIndex(start=0, stop=9, step=1) +index equal [ True True True True True True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpfcnxkv54/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpfcnxkv54/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 996779 996781 + 4137874 +2 chr1 4254432 4259992 + 874663 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 4254432 | 4259992 | a | 0 | ... | +| chr1 | 996779 | 996781 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +1 chr1 996779 996781 + 4137874 +0 chr1 4254432 4259992 + 874663 +df2 + Chromosome Start End Strand Distance +0 chr1 996779 996781 + 4137874 +2 chr1 4254432 4259992 + 874663 +Actual + Chromosome Start End Strand Distance +0 chr1 996779 996781 + 4137874 +1 chr1 4254432 4259992 + 874663 + +Expected + Chromosome Start End Strand Distance +0 chr1 996779 996781 + 4137874 +1 chr1 4254432 4259992 + 874663 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=2, step=1) +Expected index +RangeIndex(start=0, stop=2, step=1) +index equal [ True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpcc8bfpnt/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpcc8bfpnt/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 996779 996781 + 4137874 +2 chr1 4254432 4259992 + 874663 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 4254432 | 4259992 | a | 0 | ... | +| chr1 | 996779 | 996781 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +1 chr1 996779 996781 + 4137874 +0 chr1 4254432 4259992 + 874663 +df2 + Chromosome Start End Strand Distance +0 chr1 996779 996781 + 4137874 +2 chr1 4254432 4259992 + 874663 +Actual + Chromosome Start End Strand Distance +0 chr1 996779 996781 + 4137874 +1 chr1 4254432 4259992 + 874663 + +Expected + Chromosome Start End Strand Distance +0 chr1 996779 996781 + 4137874 +1 chr1 4254432 4259992 + 874663 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=2, step=1) +Expected index +RangeIndex(start=0, stop=2, step=1) +index equal [ True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmphsa_iti6/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmphsa_iti6/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 1 3 + 5134652 +2 chr1 1 5561 + 5129094 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 1 | 5561 | a | 0 | ... | +| chr1 | 1 | 3 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +1 chr1 1 3 + 5134652 +0 chr1 1 5561 + 5129094 +df2 + Chromosome Start End Strand Distance +0 chr1 1 3 + 5134652 +2 chr1 1 5561 + 5129094 +Actual + Chromosome Start End Strand Distance +0 chr1 1 3 + 5134652 +1 chr1 1 5561 + 5129094 + +Expected + Chromosome Start End Strand Distance +0 chr1 1 3 + 5134652 +1 chr1 1 5561 + 5129094 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=2, step=1) +Expected index +RangeIndex(start=0, stop=2, step=1) +index equal [ True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpfkf_3amo/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpfkf_3amo/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 1 3 + 5134652 +2 chr1 1 5561 + 5129094 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 1 | 5561 | a | 0 | ... | +| chr1 | 1 | 3 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +1 chr1 1 3 + 5134652 +0 chr1 1 5561 + 5129094 +df2 + Chromosome Start End Strand Distance +0 chr1 1 3 + 5134652 +2 chr1 1 5561 + 5129094 +Actual + Chromosome Start End Strand Distance +0 chr1 1 3 + 5134652 +1 chr1 1 5561 + 5129094 + +Expected + Chromosome Start End Strand Distance +0 chr1 1 3 + 5134652 +1 chr1 1 5561 + 5129094 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=2, step=1) +Expected index +RangeIndex(start=0, stop=2, step=1) +index equal [ True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpv1dpko_g/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpv1dpko_g/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpwihhvpz9/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpwihhvpz9/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpcyabko8d/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpcyabko8d/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp7eec_zgu/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp7eec_zgu/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 708141 717501 - 5752432 +1 chr1 837506 847505 + 335492 +2 chr1 837506 847505 + 3343020 +3 chr1 7166615 7176557 + 2968308 +4 chr1 7166615 7176557 + 6664601 +5 chr1 7925562 7926268 - 1454780 +6 chr1 8228421 8235501 - 1757639 +7 chr1 9567065 9576786 - 3096283 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 7166615 | 7176557 | a | 0 | ... | +| chr1 | 7166615 | 7176557 | a | 0 | ... | +| chr1 | 837506 | 847505 | a | 0 | ... | +| chr1 | 837506 | 847505 | a | 0 | ... | +| chr1 | 9567065 | 9576786 | a | 0 | ... | +| chr1 | 708141 | 717501 | a | 0 | ... | +| chr1 | 7925562 | 7926268 | a | 0 | ... | +| chr1 | 8228421 | 8235501 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 8 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +5 chr1 708141 717501 - 5752432 +2 chr1 837506 847505 + 335492 +3 chr1 837506 847505 + 3343020 +0 chr1 7166615 7176557 + 2968308 +1 chr1 7166615 7176557 + 6664601 +6 chr1 7925562 7926268 - 1454780 +7 chr1 8228421 8235501 - 1757639 +4 chr1 9567065 9576786 - 3096283 +df2 + Chromosome Start End Strand Distance +0 chr1 708141 717501 - 5752432 +1 chr1 837506 847505 + 335492 +2 chr1 837506 847505 + 3343020 +3 chr1 7166615 7176557 + 2968308 +4 chr1 7166615 7176557 + 6664601 +5 chr1 7925562 7926268 - 1454780 +6 chr1 8228421 8235501 - 1757639 +7 chr1 9567065 9576786 - 3096283 +Actual + Chromosome Start End Strand Distance +0 chr1 708141 717501 - 5752432 +1 chr1 837506 847505 + 335492 +2 chr1 837506 847505 + 3343020 +3 chr1 7166615 7176557 + 2968308 +4 chr1 7166615 7176557 + 6664601 +5 chr1 7925562 7926268 - 1454780 +6 chr1 8228421 8235501 - 1757639 +7 chr1 9567065 9576786 - 3096283 + +Expected + Chromosome Start End Strand Distance +0 chr1 708141 717501 - 5752432 +1 chr1 837506 847505 + 335492 +2 chr1 837506 847505 + 3343020 +3 chr1 7166615 7176557 + 2968308 +4 chr1 7166615 7176557 + 6664601 +5 chr1 7925562 7926268 - 1454780 +6 chr1 8228421 8235501 - 1757639 +7 chr1 9567065 9576786 - 3096283 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=8, step=1) +Expected index +RangeIndex(start=0, stop=8, step=1) +index equal [ True True True True True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpahvc0_42/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpahvc0_42/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpopqrx0wu/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpopqrx0wu/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpy8p9yvpz/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpy8p9yvpz/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpea4nszwr/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpea4nszwr/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmprzuk56cr/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmprzuk56cr/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpsih574nz/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpsih574nz/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpqkev9t94/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpqkev9t94/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp1n4fgjqh/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp1n4fgjqh/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp9u2mtzc9/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp9u2mtzc9/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmppuhwzyre/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmppuhwzyre/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpbt887nvk/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpbt887nvk/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpkvh_7w9n/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpkvh_7w9n/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpb0hzmqns/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpb0hzmqns/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpv1vuo5ov/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpv1vuo5ov/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +1 chr1 2349688 2358708 + 7210008 +2 chr1 8386570 8389668 + 1179048 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 8386570 | 8389668 | a | 0 | ... | +| chr1 | 2349688 | 2358708 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +1 chr1 2349688 2358708 + 7210008 +0 chr1 8386570 8389668 + 1179048 +df2 + Chromosome Start End Strand Distance +1 chr1 2349688 2358708 + 7210008 +2 chr1 8386570 8389668 + 1179048 +Actual + Chromosome Start End Strand Distance +0 chr1 2349688 2358708 + 7210008 +1 chr1 8386570 8389668 + 1179048 + +Expected + Chromosome Start End Strand Distance +0 chr1 2349688 2358708 + 7210008 +1 chr1 8386570 8389668 + 1179048 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=2, step=1) +Expected index +RangeIndex(start=0, stop=2, step=1) +index equal [ True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpj7_i5tft/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpj7_i5tft/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpfhx827xf/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpfhx827xf/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpcgjqfgcw/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpcgjqfgcw/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp3zx2v81i/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp3zx2v81i/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpbcg4d3sd/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpbcg4d3sd/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp5vzxuvww/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp5vzxuvww/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +1 chr1 20 21 - 19 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 20 | 21 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 20 21 - 19 +df2 + Chromosome Start End Strand Distance +1 chr1 20 21 - 19 +Actual + Chromosome Start End Strand Distance +0 chr1 20 21 - 19 + +Expected + Chromosome Start End Strand Distance +0 chr1 20 21 - 19 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=1, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +index equal [ True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpcyhru2dj/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpcyhru2dj/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +2 chr1 3425879 3431998 + 169105 +3 chr1 3425879 3431998 + 1882592 +4 chr1 5558416 5562025 + 238537 +5 chr1 5558416 5562025 + 2301642 +6 chr1 5616769 5623518 + 296890 +7 chr1 5616769 5623518 + 2359995 +9 chr1 8263608 8270830 + 828463 +10 chr1 8263608 8270830 + 982425 +12 chr1 9804349 9804427 + 549643 +13 chr1 9804349 9804427 + 705057 +14 chr1 10000000 10001350 + 745294 +15 chr1 10000000 10001350 + 900708 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 8263608 | 8270830 | a | 0 | ... | +| chr1 | 8263608 | 8270830 | a | 0 | ... | +| chr1 | 5558416 | 5562025 | a | 0 | ... | +| chr1 | 5558416 | 5562025 | a | 0 | ... | +| ... | ... | ... | ... | ... | ... | +| chr1 | 9804349 | 9804427 | a | 0 | ... | +| chr1 | 9804349 | 9804427 | a | 0 | ... | +| chr1 | 3425879 | 3431998 | a | 0 | ... | +| chr1 | 3425879 | 3431998 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 12 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +10 chr1 3425879 3431998 + 169105 +11 chr1 3425879 3431998 + 1882592 +2 chr1 5558416 5562025 + 238537 +3 chr1 5558416 5562025 + 2301642 +4 chr1 5616769 5623518 + 296890 +5 chr1 5616769 5623518 + 2359995 +0 chr1 8263608 8270830 + 828463 +1 chr1 8263608 8270830 + 982425 +8 chr1 9804349 9804427 + 549643 +9 chr1 9804349 9804427 + 705057 +6 chr1 10000000 10001350 + 745294 +7 chr1 10000000 10001350 + 900708 +df2 + Chromosome Start End Strand Distance +2 chr1 3425879 3431998 + 169105 +3 chr1 3425879 3431998 + 1882592 +4 chr1 5558416 5562025 + 238537 +5 chr1 5558416 5562025 + 2301642 +6 chr1 5616769 5623518 + 296890 +7 chr1 5616769 5623518 + 2359995 +9 chr1 8263608 8270830 + 828463 +10 chr1 8263608 8270830 + 982425 +12 chr1 9804349 9804427 + 549643 +13 chr1 9804349 9804427 + 705057 +14 chr1 10000000 10001350 + 745294 +15 chr1 10000000 10001350 + 900708 +Actual + Chromosome Start End Strand Distance +0 chr1 3425879 3431998 + 169105 +1 chr1 3425879 3431998 + 1882592 +2 chr1 5558416 5562025 + 238537 +3 chr1 5558416 5562025 + 2301642 +4 chr1 5616769 5623518 + 296890 +5 chr1 5616769 5623518 + 2359995 +6 chr1 8263608 8270830 + 828463 +7 chr1 8263608 8270830 + 982425 +8 chr1 9804349 9804427 + 549643 +9 chr1 9804349 9804427 + 705057 +10 chr1 10000000 10001350 + 745294 +11 chr1 10000000 10001350 + 900708 + +Expected + Chromosome Start End Strand Distance +0 chr1 3425879 3431998 + 169105 +1 chr1 3425879 3431998 + 1882592 +2 chr1 5558416 5562025 + 238537 +3 chr1 5558416 5562025 + 2301642 +4 chr1 5616769 5623518 + 296890 +5 chr1 5616769 5623518 + 2359995 +6 chr1 8263608 8270830 + 828463 +7 chr1 8263608 8270830 + 982425 +8 chr1 9804349 9804427 + 549643 +9 chr1 9804349 9804427 + 705057 +10 chr1 10000000 10001350 + 745294 +11 chr1 10000000 10001350 + 900708 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=12, step=1) +Expected index +RangeIndex(start=0, stop=12, step=1) +index equal [ True True True True True True True True True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmppl75yf36/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmppl75yf36/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +2 chr1 3425879 3431998 + 169105 +3 chr1 3425879 3431998 + 1882592 +4 chr1 5558416 5562025 + 238537 +5 chr1 5558416 5562025 + 2301642 +6 chr1 5616769 5623518 + 296890 +7 chr1 5616769 5623518 + 2359995 +9 chr1 8263608 8270830 + 828463 +10 chr1 8263608 8270830 + 982425 +12 chr1 9804349 9804427 + 549643 +13 chr1 9804349 9804427 + 705057 +14 chr1 10000000 10001350 + 745294 +15 chr1 10000000 10001350 + 900708 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 8263608 | 8270830 | a | 0 | ... | +| chr1 | 8263608 | 8270830 | a | 0 | ... | +| chr1 | 5558416 | 5562025 | a | 0 | ... | +| chr1 | 5558416 | 5562025 | a | 0 | ... | +| ... | ... | ... | ... | ... | ... | +| chr1 | 9804349 | 9804427 | a | 0 | ... | +| chr1 | 9804349 | 9804427 | a | 0 | ... | +| chr1 | 3425879 | 3431998 | a | 0 | ... | +| chr1 | 3425879 | 3431998 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 12 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +10 chr1 3425879 3431998 + 169105 +11 chr1 3425879 3431998 + 1882592 +2 chr1 5558416 5562025 + 238537 +3 chr1 5558416 5562025 + 2301642 +4 chr1 5616769 5623518 + 296890 +5 chr1 5616769 5623518 + 2359995 +0 chr1 8263608 8270830 + 828463 +1 chr1 8263608 8270830 + 982425 +8 chr1 9804349 9804427 + 549643 +9 chr1 9804349 9804427 + 705057 +6 chr1 10000000 10001350 + 745294 +7 chr1 10000000 10001350 + 900708 +df2 + Chromosome Start End Strand Distance +2 chr1 3425879 3431998 + 169105 +3 chr1 3425879 3431998 + 1882592 +4 chr1 5558416 5562025 + 238537 +5 chr1 5558416 5562025 + 2301642 +6 chr1 5616769 5623518 + 296890 +7 chr1 5616769 5623518 + 2359995 +9 chr1 8263608 8270830 + 828463 +10 chr1 8263608 8270830 + 982425 +12 chr1 9804349 9804427 + 549643 +13 chr1 9804349 9804427 + 705057 +14 chr1 10000000 10001350 + 745294 +15 chr1 10000000 10001350 + 900708 +Actual + Chromosome Start End Strand Distance +0 chr1 3425879 3431998 + 169105 +1 chr1 3425879 3431998 + 1882592 +2 chr1 5558416 5562025 + 238537 +3 chr1 5558416 5562025 + 2301642 +4 chr1 5616769 5623518 + 296890 +5 chr1 5616769 5623518 + 2359995 +6 chr1 8263608 8270830 + 828463 +7 chr1 8263608 8270830 + 982425 +8 chr1 9804349 9804427 + 549643 +9 chr1 9804349 9804427 + 705057 +10 chr1 10000000 10001350 + 745294 +11 chr1 10000000 10001350 + 900708 + +Expected + Chromosome Start End Strand Distance +0 chr1 3425879 3431998 + 169105 +1 chr1 3425879 3431998 + 1882592 +2 chr1 5558416 5562025 + 238537 +3 chr1 5558416 5562025 + 2301642 +4 chr1 5616769 5623518 + 296890 +5 chr1 5616769 5623518 + 2359995 +6 chr1 8263608 8270830 + 828463 +7 chr1 8263608 8270830 + 982425 +8 chr1 9804349 9804427 + 549643 +9 chr1 9804349 9804427 + 705057 +10 chr1 10000000 10001350 + 745294 +11 chr1 10000000 10001350 + 900708 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=12, step=1) +Expected index +RangeIndex(start=0, stop=12, step=1) +index equal [ True True True True True True True True True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp4rrkqag_/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp4rrkqag_/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpwv6bfbk3/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpwv6bfbk3/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 3256693 3256775 - 3256686 +1 chr1 3256693 3256775 - 3256692 +2 chr1 5314589 5319880 - 5314582 +3 chr1 5314589 5319880 - 5314588 +4 chr1 9099292 9099293 - 9099285 +5 chr1 9099292 9099293 - 9099291 +6 chr1 9253254 9254707 - 9253247 +7 chr1 9253254 9254707 - 9253253 +8 chr6 9435284 9442726 - 9435283 +9 chr8 8854525 8857939 - 8854524 +10 chrM 2577468 2578989 - 2577467 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 3256693 | 3256775 | a | 0 | ... | +| chr1 | 3256693 | 3256775 | a | 0 | ... | +| chr1 | 9253254 | 9254707 | a | 0 | ... | +| chr1 | 9253254 | 9254707 | a | 0 | ... | +| ... | ... | ... | ... | ... | ... | +| chr1 | 5314589 | 5319880 | a | 0 | ... | +| chr1 | 5314589 | 5319880 | a | 0 | ... | +| chr1 | 9099292 | 9099293 | a | 0 | ... | +| chr1 | 9099292 | 9099293 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 11 rows and 12 columns from 4 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +10 chrM 2577468 2578989 - 2577467 +0 chr1 3256693 3256775 - 3256686 +1 chr1 3256693 3256775 - 3256692 +4 chr1 5314589 5319880 - 5314582 +5 chr1 5314589 5319880 - 5314588 +9 chr8 8854525 8857939 - 8854524 +6 chr1 9099292 9099293 - 9099285 +7 chr1 9099292 9099293 - 9099291 +2 chr1 9253254 9254707 - 9253247 +3 chr1 9253254 9254707 - 9253253 +8 chr6 9435284 9442726 - 9435283 +df2 + Chromosome Start End Strand Distance +10 chrM 2577468 2578989 - 2577467 +0 chr1 3256693 3256775 - 3256686 +1 chr1 3256693 3256775 - 3256692 +2 chr1 5314589 5319880 - 5314582 +3 chr1 5314589 5319880 - 5314588 +9 chr8 8854525 8857939 - 8854524 +4 chr1 9099292 9099293 - 9099285 +5 chr1 9099292 9099293 - 9099291 +6 chr1 9253254 9254707 - 9253247 +7 chr1 9253254 9254707 - 9253253 +8 chr6 9435284 9442726 - 9435283 +Actual + Chromosome Start End Strand Distance +0 chr1 3256693 3256775 - 3256686 +1 chr1 3256693 3256775 - 3256692 +2 chr1 5314589 5319880 - 5314582 +3 chr1 5314589 5319880 - 5314588 +4 chr1 9099292 9099293 - 9099285 +5 chr1 9099292 9099293 - 9099291 +6 chr1 9253254 9254707 - 9253247 +7 chr1 9253254 9254707 - 9253253 +8 chr6 9435284 9442726 - 9435283 +9 chr8 8854525 8857939 - 8854524 +10 chrM 2577468 2578989 - 2577467 + +Expected + Chromosome Start End Strand Distance +0 chr1 3256693 3256775 - 3256686 +1 chr1 3256693 3256775 - 3256692 +2 chr1 5314589 5319880 - 5314582 +3 chr1 5314589 5319880 - 5314588 +4 chr1 9099292 9099293 - 9099285 +5 chr1 9099292 9099293 - 9099291 +6 chr1 9253254 9254707 - 9253247 +7 chr1 9253254 9254707 - 9253253 +8 chr6 9435284 9442726 - 9435283 +9 chr8 8854525 8857939 - 8854524 +10 chrM 2577468 2578989 - 2577467 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=11, step=1) +Expected index +RangeIndex(start=0, stop=11, step=1) +index equal [ True True True True True True True True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpol0frs2n/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpol0frs2n/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 3256693 3256694 - 3256686 +1 chr1 3256693 3256694 - 3256692 +2 chr1 5314589 5314590 - 5314582 +3 chr1 5314589 5314590 - 5314588 +4 chr1 9099292 9099293 - 9099285 +5 chr1 9099292 9099293 - 9099291 +6 chr1 9253254 9253255 - 9253247 +7 chr1 9253254 9253255 - 9253253 +8 chr6 9435284 9435285 - 9435283 +9 chr8 8854525 8854526 - 8854524 +10 chrM 2577468 2577469 - 2577467 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 3256693 | 3256694 | a | 0 | ... | +| chr1 | 3256693 | 3256694 | a | 0 | ... | +| chr1 | 9253254 | 9253255 | a | 0 | ... | +| chr1 | 9253254 | 9253255 | a | 0 | ... | +| ... | ... | ... | ... | ... | ... | +| chr1 | 5314589 | 5314590 | a | 0 | ... | +| chr1 | 5314589 | 5314590 | a | 0 | ... | +| chr1 | 9099292 | 9099293 | a | 0 | ... | +| chr1 | 9099292 | 9099293 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 11 rows and 12 columns from 4 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +10 chrM 2577468 2577469 - 2577467 +0 chr1 3256693 3256694 - 3256686 +1 chr1 3256693 3256694 - 3256692 +4 chr1 5314589 5314590 - 5314582 +5 chr1 5314589 5314590 - 5314588 +9 chr8 8854525 8854526 - 8854524 +6 chr1 9099292 9099293 - 9099285 +7 chr1 9099292 9099293 - 9099291 +2 chr1 9253254 9253255 - 9253247 +3 chr1 9253254 9253255 - 9253253 +8 chr6 9435284 9435285 - 9435283 +df2 + Chromosome Start End Strand Distance +10 chrM 2577468 2577469 - 2577467 +0 chr1 3256693 3256694 - 3256686 +1 chr1 3256693 3256694 - 3256692 +2 chr1 5314589 5314590 - 5314582 +3 chr1 5314589 5314590 - 5314588 +9 chr8 8854525 8854526 - 8854524 +4 chr1 9099292 9099293 - 9099285 +5 chr1 9099292 9099293 - 9099291 +6 chr1 9253254 9253255 - 9253247 +7 chr1 9253254 9253255 - 9253253 +8 chr6 9435284 9435285 - 9435283 +Actual + Chromosome Start End Strand Distance +0 chr1 3256693 3256694 - 3256686 +1 chr1 3256693 3256694 - 3256692 +2 chr1 5314589 5314590 - 5314582 +3 chr1 5314589 5314590 - 5314588 +4 chr1 9099292 9099293 - 9099285 +5 chr1 9099292 9099293 - 9099291 +6 chr1 9253254 9253255 - 9253247 +7 chr1 9253254 9253255 - 9253253 +8 chr6 9435284 9435285 - 9435283 +9 chr8 8854525 8854526 - 8854524 +10 chrM 2577468 2577469 - 2577467 + +Expected + Chromosome Start End Strand Distance +0 chr1 3256693 3256694 - 3256686 +1 chr1 3256693 3256694 - 3256692 +2 chr1 5314589 5314590 - 5314582 +3 chr1 5314589 5314590 - 5314588 +4 chr1 9099292 9099293 - 9099285 +5 chr1 9099292 9099293 - 9099291 +6 chr1 9253254 9253255 - 9253247 +7 chr1 9253254 9253255 - 9253253 +8 chr6 9435284 9435285 - 9435283 +9 chr8 8854525 8854526 - 8854524 +10 chrM 2577468 2577469 - 2577467 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=11, step=1) +Expected index +RangeIndex(start=0, stop=11, step=1) +index equal [ True True True True True True True True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp7k0eljuk/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp7k0eljuk/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpyzl_mbe1/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpyzl_mbe1/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpf4i3ckzw/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpf4i3ckzw/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 5803937 5812537 - 2978634 +1 chr1 9275414 9279652 - 482896 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 5803937 | 5812537 | a | 0 | ... | +| chr1 | 9275414 | 9279652 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 5803937 5812537 - 2978634 +1 chr1 9275414 9279652 - 482896 +df2 + Chromosome Start End Strand Distance +0 chr1 5803937 5812537 - 2978634 +1 chr1 9275414 9279652 - 482896 +Actual + Chromosome Start End Strand Distance +0 chr1 5803937 5812537 - 2978634 +1 chr1 9275414 9279652 - 482896 + +Expected + Chromosome Start End Strand Distance +0 chr1 5803937 5812537 - 2978634 +1 chr1 9275414 9279652 - 482896 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=2, step=1) +Expected index +RangeIndex(start=0, stop=2, step=1) +index equal [ True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpmyc7eziy/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpmyc7eziy/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp445lkulo/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp445lkulo/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpgpkzdi3u/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpgpkzdi3u/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp5zbh_7yv/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp5zbh_7yv/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp2sreqax8/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp2sreqax8/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp3k4d8e8l/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp3k4d8e8l/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpwd_89xme/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpwd_89xme/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr13 573085 573613 - 2203968 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr13 | 573085 | 573613 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr13 573085 573613 - 2203968 +df2 + Chromosome Start End Strand Distance +0 chr13 573085 573613 - 2203968 +Actual + Chromosome Start End Strand Distance +0 chr13 573085 573613 - 2203968 + +Expected + Chromosome Start End Strand Distance +0 chr13 573085 573613 - 2203968 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=1, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +index equal [ True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpmqbjgz0r/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpmqbjgz0r/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpbo82lm_v/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpbo82lm_v/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpfz2o3y8i/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpfz2o3y8i/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 7086017 7090135 + 1301235 +1 chr1 7086017 7090135 + 6477558 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 7086017 | 7090135 | a | 0 | ... | +| chr1 | 7086017 | 7090135 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 7086017 7090135 + 1301235 +1 chr1 7086017 7090135 + 6477558 +df2 + Chromosome Start End Strand Distance +0 chr1 7086017 7090135 + 1301235 +1 chr1 7086017 7090135 + 6477558 +Actual + Chromosome Start End Strand Distance +0 chr1 7086017 7090135 + 1301235 +1 chr1 7086017 7090135 + 6477558 + +Expected + Chromosome Start End Strand Distance +0 chr1 7086017 7090135 + 1301235 +1 chr1 7086017 7090135 + 6477558 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=2, step=1) +Expected index +RangeIndex(start=0, stop=2, step=1) +index equal [ True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpxpn99wsq/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpxpn99wsq/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpkfqc_9kd/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpkfqc_9kd/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp0cn0r3it/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp0cn0r3it/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp02c2vbx3/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp02c2vbx3/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpt8hpumw2/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpt8hpumw2/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmphgmft9z2/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmphgmft9z2/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp_yltkt15/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp_yltkt15/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpyrizhj5k/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpyrizhj5k/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpwud5p75f/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpwud5p75f/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpns83vt2u/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpns83vt2u/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpe_9fyeps/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpe_9fyeps/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmplqni4heh/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmplqni4heh/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp20bzkz_5/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp20bzkz_5/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpgk26rro9/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpgk26rro9/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 9957878 9957879 - 9957877 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 9957878 | 9957879 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 9957878 9957879 - 9957877 +df2 + Chromosome Start End Strand Distance +0 chr1 9957878 9957879 - 9957877 +Actual + Chromosome Start End Strand Distance +0 chr1 9957878 9957879 - 9957877 + +Expected + Chromosome Start End Strand Distance +0 chr1 9957878 9957879 - 9957877 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=1, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +index equal [ True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp9vh2d2mz/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp9vh2d2mz/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 919655 919656 - 919654 +1 chr1 9957878 9957879 - 9957877 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 9957878 | 9957879 | a | 0 | ... | +| chr1 | 919655 | 919656 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +1 chr1 919655 919656 - 919654 +0 chr1 9957878 9957879 - 9957877 +df2 + Chromosome Start End Strand Distance +0 chr1 919655 919656 - 919654 +1 chr1 9957878 9957879 - 9957877 +Actual + Chromosome Start End Strand Distance +0 chr1 919655 919656 - 919654 +1 chr1 9957878 9957879 - 9957877 + +Expected + Chromosome Start End Strand Distance +0 chr1 919655 919656 - 919654 +1 chr1 9957878 9957879 - 9957877 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=2, step=1) +Expected index +RangeIndex(start=0, stop=2, step=1) +index equal [ True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpz095m31d/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpz095m31d/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmps5z2p6xz/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmps5z2p6xz/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp8tjmhxd3/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp8tjmhxd3/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpwoheoj49/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpwoheoj49/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 5311680 5321505 - 1237516 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 5311680 | 5321505 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 5311680 5321505 - 1237516 +df2 + Chromosome Start End Strand Distance +0 chr1 5311680 5321505 - 1237516 +Actual + Chromosome Start End Strand Distance +0 chr1 5311680 5321505 - 1237516 + +Expected + Chromosome Start End Strand Distance +0 chr1 5311680 5321505 - 1237516 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=1, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +index equal [ True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpsm8ix5dk/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpsm8ix5dk/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpybkkv87l/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpybkkv87l/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpimyiftfk/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpimyiftfk/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpghzgfsx1/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpghzgfsx1/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpi0e0pxyd/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpi0e0pxyd/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 2875904 2884684 + 2526119 +1 chr1 2875904 2884684 + 6783756 +2 chr1 4702538 4711464 + 4352753 +3 chr1 4702538 4711464 + 4956976 +4 chr1 5199533 5201345 + 4467095 +5 chr1 5199533 5201345 + 4849748 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 2875904 | 2884684 | a | 0 | ... | +| chr1 | 2875904 | 2884684 | a | 0 | ... | +| chr1 | 5199533 | 5201345 | a | 0 | ... | +| chr1 | 5199533 | 5201345 | a | 0 | ... | +| chr1 | 4702538 | 4711464 | a | 0 | ... | +| chr1 | 4702538 | 4711464 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 6 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 2875904 2884684 + 2526119 +1 chr1 2875904 2884684 + 6783756 +4 chr1 4702538 4711464 + 4352753 +5 chr1 4702538 4711464 + 4956976 +2 chr1 5199533 5201345 + 4467095 +3 chr1 5199533 5201345 + 4849748 +df2 + Chromosome Start End Strand Distance +0 chr1 2875904 2884684 + 2526119 +1 chr1 2875904 2884684 + 6783756 +2 chr1 4702538 4711464 + 4352753 +3 chr1 4702538 4711464 + 4956976 +4 chr1 5199533 5201345 + 4467095 +5 chr1 5199533 5201345 + 4849748 +Actual + Chromosome Start End Strand Distance +0 chr1 2875904 2884684 + 2526119 +1 chr1 2875904 2884684 + 6783756 +2 chr1 4702538 4711464 + 4352753 +3 chr1 4702538 4711464 + 4956976 +4 chr1 5199533 5201345 + 4467095 +5 chr1 5199533 5201345 + 4849748 + +Expected + Chromosome Start End Strand Distance +0 chr1 2875904 2884684 + 2526119 +1 chr1 2875904 2884684 + 6783756 +2 chr1 4702538 4711464 + 4352753 +3 chr1 4702538 4711464 + 4956976 +4 chr1 5199533 5201345 + 4467095 +5 chr1 5199533 5201345 + 4849748 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=6, step=1) +Expected index +RangeIndex(start=0, stop=6, step=1) +index equal [ True True True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpmxu6d4yc/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpmxu6d4yc/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpv1jkf6wm/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpv1jkf6wm/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp42tgjh1i/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp42tgjh1i/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpyn6fm690/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpyn6fm690/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp1cvovgh5/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp1cvovgh5/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp8tpip6j0/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp8tpip6j0/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp4gd04zhj/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp4gd04zhj/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 6609112 6609158 + 3390843 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 6609112 | 6609158 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 6609112 6609158 + 3390843 +df2 + Chromosome Start End Strand Distance +0 chr1 6609112 6609158 + 3390843 +Actual + Chromosome Start End Strand Distance +0 chr1 6609112 6609158 + 3390843 + +Expected + Chromosome Start End Strand Distance +0 chr1 6609112 6609158 + 3390843 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=1, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +index equal [ True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpd8tkged4/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpd8tkged4/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +1 chr1 6609112 6609158 + 3390843 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 6609112 | 6609158 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 6609112 6609158 + 3390843 +df2 + Chromosome Start End Strand Distance +1 chr1 6609112 6609158 + 3390843 +Actual + Chromosome Start End Strand Distance +0 chr1 6609112 6609158 + 3390843 + +Expected + Chromosome Start End Strand Distance +0 chr1 6609112 6609158 + 3390843 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=1, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +index equal [ True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpdrwfucm1/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpdrwfucm1/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +1 chr1 6609112 6609158 + 3390843 +2 chr1 6609112 6609158 + 5967076 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 6609112 | 6609158 | a | 0 | ... | +| chr1 | 6609112 | 6609158 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 6609112 6609158 + 3390843 +1 chr1 6609112 6609158 + 5967076 +df2 + Chromosome Start End Strand Distance +1 chr1 6609112 6609158 + 3390843 +2 chr1 6609112 6609158 + 5967076 +Actual + Chromosome Start End Strand Distance +0 chr1 6609112 6609158 + 3390843 +1 chr1 6609112 6609158 + 5967076 + +Expected + Chromosome Start End Strand Distance +0 chr1 6609112 6609158 + 3390843 +1 chr1 6609112 6609158 + 5967076 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=2, step=1) +Expected index +RangeIndex(start=0, stop=2, step=1) +index equal [ True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpbbmwei3u/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpbbmwei3u/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 636860 636861 - 636859 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 636860 | 636861 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 636860 636861 - 636859 +df2 + Chromosome Start End Strand Distance +0 chr1 636860 636861 - 636859 +Actual + Chromosome Start End Strand Distance +0 chr1 636860 636861 - 636859 + +Expected + Chromosome Start End Strand Distance +0 chr1 636860 636861 - 636859 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=1, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +index equal [ True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmprk1rtgo7/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmprk1rtgo7/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +1 chr1 636860 636861 + 636859 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 636860 | 636861 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 636860 636861 + 636859 +df2 + Chromosome Start End Strand Distance +1 chr1 636860 636861 + 636859 +Actual + Chromosome Start End Strand Distance +0 chr1 636860 636861 + 636859 + +Expected + Chromosome Start End Strand Distance +0 chr1 636860 636861 + 636859 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=1, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +index equal [ True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp8yo13lcd/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp8yo13lcd/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmprs9h594r/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmprs9h594r/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp_lochk91/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp_lochk91/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpgfk80p75/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpgfk80p75/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpxrcgt6a7/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpxrcgt6a7/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 608992 617970 + 608991 +1 chr1 6083609 6092587 + 6083608 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 6083609 | 6092587 | a | 0 | ... | +| chr1 | 608992 | 617970 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +1 chr1 608992 617970 + 608991 +0 chr1 6083609 6092587 + 6083608 +df2 + Chromosome Start End Strand Distance +0 chr1 608992 617970 + 608991 +1 chr1 6083609 6092587 + 6083608 +Actual + Chromosome Start End Strand Distance +0 chr1 608992 617970 + 608991 +1 chr1 6083609 6092587 + 6083608 + +Expected + Chromosome Start End Strand Distance +0 chr1 608992 617970 + 608991 +1 chr1 6083609 6092587 + 6083608 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=2, step=1) +Expected index +RangeIndex(start=0, stop=2, step=1) +index equal [ True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmphh8eid1r/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmphh8eid1r/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpkb4kl9qz/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpkb4kl9qz/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpvrhz4690/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpvrhz4690/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmppn_n2vii/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmppn_n2vii/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 4134392 4134393 + 2774083 +1 chr1 4134392 4134393 + 2880894 +3 chr1 5471486 5479521 + 4111177 +4 chr1 5471486 5479521 + 4217988 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 5471486 | 5479521 | a | 0 | ... | +| chr1 | 5471486 | 5479521 | a | 0 | ... | +| chr1 | 4134392 | 4134393 | a | 0 | ... | +| chr1 | 4134392 | 4134393 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 4 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +2 chr1 4134392 4134393 + 2774083 +3 chr1 4134392 4134393 + 2880894 +0 chr1 5471486 5479521 + 4111177 +1 chr1 5471486 5479521 + 4217988 +df2 + Chromosome Start End Strand Distance +0 chr1 4134392 4134393 + 2774083 +1 chr1 4134392 4134393 + 2880894 +3 chr1 5471486 5479521 + 4111177 +4 chr1 5471486 5479521 + 4217988 +Actual + Chromosome Start End Strand Distance +0 chr1 4134392 4134393 + 2774083 +1 chr1 4134392 4134393 + 2880894 +2 chr1 5471486 5479521 + 4111177 +3 chr1 5471486 5479521 + 4217988 + +Expected + Chromosome Start End Strand Distance +0 chr1 4134392 4134393 + 2774083 +1 chr1 4134392 4134393 + 2880894 +2 chr1 5471486 5479521 + 4111177 +3 chr1 5471486 5479521 + 4217988 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=4, step=1) +Expected index +RangeIndex(start=0, stop=4, step=1) +index equal [ True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpwtzs2_r5/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpwtzs2_r5/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpf732v48r/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpf732v48r/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp18patd9g/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp18patd9g/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpqrws9c6e/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpqrws9c6e/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpfh3z9yzo/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpfh3z9yzo/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 2391887 2401247 + 4550478 +1 chr1 2579315 2582533 + 4369192 +2 chr1 5187954 5192040 - 1759685 +3 chr1 5589919 5589953 - 1361772 +4 chr1 6212715 6215036 - 736689 +5 chr1 6957341 6965160 - 4873 +6 chr1 6980210 6986697 - 20386 +7 chr1 6980210 6986697 - 27742 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 2579315 | 2582533 | a | 0 | ... | +| chr1 | 2391887 | 2401247 | a | 0 | ... | +| chr1 | 6212715 | 6215036 | a | 0 | ... | +| chr1 | 5187954 | 5192040 | a | 0 | ... | +| chr1 | 6980210 | 6986697 | a | 0 | ... | +| chr1 | 6980210 | 6986697 | a | 0 | ... | +| chr1 | 5589919 | 5589953 | a | 0 | ... | +| chr1 | 6957341 | 6965160 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 8 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +1 chr1 2391887 2401247 + 4550478 +0 chr1 2579315 2582533 + 4369192 +3 chr1 5187954 5192040 - 1759685 +6 chr1 5589919 5589953 - 1361772 +2 chr1 6212715 6215036 - 736689 +7 chr1 6957341 6965160 - 4873 +4 chr1 6980210 6986697 - 20386 +5 chr1 6980210 6986697 - 27742 +df2 + Chromosome Start End Strand Distance +0 chr1 2391887 2401247 + 4550478 +1 chr1 2579315 2582533 + 4369192 +2 chr1 5187954 5192040 - 1759685 +3 chr1 5589919 5589953 - 1361772 +4 chr1 6212715 6215036 - 736689 +5 chr1 6957341 6965160 - 4873 +6 chr1 6980210 6986697 - 20386 +7 chr1 6980210 6986697 - 27742 +Actual + Chromosome Start End Strand Distance +0 chr1 2391887 2401247 + 4550478 +1 chr1 2579315 2582533 + 4369192 +2 chr1 5187954 5192040 - 1759685 +3 chr1 5589919 5589953 - 1361772 +4 chr1 6212715 6215036 - 736689 +5 chr1 6957341 6965160 - 4873 +6 chr1 6980210 6986697 - 20386 +7 chr1 6980210 6986697 - 27742 + +Expected + Chromosome Start End Strand Distance +0 chr1 2391887 2401247 + 4550478 +1 chr1 2579315 2582533 + 4369192 +2 chr1 5187954 5192040 - 1759685 +3 chr1 5589919 5589953 - 1361772 +4 chr1 6212715 6215036 - 736689 +5 chr1 6957341 6965160 - 4873 +6 chr1 6980210 6986697 - 20386 +7 chr1 6980210 6986697 - 27742 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=8, step=1) +Expected index +RangeIndex(start=0, stop=8, step=1) +index equal [ True True True True True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpkb8hperr/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpkb8hperr/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +1 chr1 1 2 - 2 +2 chr1 1 2 - 2 +3 chr1 1 2 - 2 +5 chr1 2 3 - 1 +6 chr1 2 3 - 1 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 1 | 2 | a | 0 | ... | +| chr1 | 1 | 2 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 1 | 2 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 7 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 1 2 - 2 +1 chr1 1 2 - 2 +6 chr1 1 2 - 2 +2 chr1 2 3 - 1 +3 chr1 2 3 - 1 +4 chr1 2 3 - 1 +5 chr1 2 3 - 1 +df2 + Chromosome Start End Strand Distance +1 chr1 1 2 - 2 +2 chr1 1 2 - 2 +3 chr1 1 2 - 2 +5 chr1 2 3 - 1 +6 chr1 2 3 - 1 +Actual + Chromosome Start End Strand Distance +0 chr1 1 2 - 2 +1 chr1 1 2 - 2 +2 chr1 1 2 - 2 +3 chr1 2 3 - 1 +4 chr1 2 3 - 1 +5 chr1 2 3 - 1 +6 chr1 2 3 - 1 + +Expected + Chromosome Start End Strand Distance +0 chr1 1 2 - 2 +1 chr1 1 2 - 2 +2 chr1 1 2 - 2 +3 chr1 2 3 - 1 +4 chr1 2 3 - 1 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=7, step=1) +Expected index +RangeIndex(start=0, stop=5, step=1) +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp39xjc9oq/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp39xjc9oq/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +1 chr1 1 2 - 2 +2 chr1 1 2 - 2 +3 chr1 1 2 - 2 +5 chr1 2 3 - 1 +6 chr1 2 3 - 1 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 1 | 2 | a | 0 | ... | +| chr1 | 1 | 2 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 1 | 2 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 7 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 1 2 - 2 +1 chr1 1 2 - 2 +6 chr1 1 2 - 2 +2 chr1 2 3 - 1 +3 chr1 2 3 - 1 +4 chr1 2 3 - 1 +5 chr1 2 3 - 1 +df2 + Chromosome Start End Strand Distance +1 chr1 1 2 - 2 +2 chr1 1 2 - 2 +3 chr1 1 2 - 2 +5 chr1 2 3 - 1 +6 chr1 2 3 - 1 +Actual + Chromosome Start End Strand Distance +0 chr1 1 2 - 2 +1 chr1 1 2 - 2 +2 chr1 1 2 - 2 +3 chr1 2 3 - 1 +4 chr1 2 3 - 1 +5 chr1 2 3 - 1 +6 chr1 2 3 - 1 + +Expected + Chromosome Start End Strand Distance +0 chr1 1 2 - 2 +1 chr1 1 2 - 2 +2 chr1 1 2 - 2 +3 chr1 2 3 - 1 +4 chr1 2 3 - 1 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=7, step=1) +Expected index +RangeIndex(start=0, stop=5, step=1) +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpwjw1996a/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpwjw1996a/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +1 chr1 1 2 - 2 +2 chr1 1 2 - 2 +3 chr1 1 2 - 2 +5 chr1 2 3 - 1 +6 chr1 2 3 - 1 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 1 | 2 | a | 0 | ... | +| chr1 | 1 | 2 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 1 | 2 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 7 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 1 2 - 2 +1 chr1 1 2 - 2 +6 chr1 1 2 - 2 +2 chr1 2 3 - 1 +3 chr1 2 3 - 1 +4 chr1 2 3 - 1 +5 chr1 2 3 - 1 +df2 + Chromosome Start End Strand Distance +1 chr1 1 2 - 2 +2 chr1 1 2 - 2 +3 chr1 1 2 - 2 +5 chr1 2 3 - 1 +6 chr1 2 3 - 1 +Actual + Chromosome Start End Strand Distance +0 chr1 1 2 - 2 +1 chr1 1 2 - 2 +2 chr1 1 2 - 2 +3 chr1 2 3 - 1 +4 chr1 2 3 - 1 +5 chr1 2 3 - 1 +6 chr1 2 3 - 1 + +Expected + Chromosome Start End Strand Distance +0 chr1 1 2 - 2 +1 chr1 1 2 - 2 +2 chr1 1 2 - 2 +3 chr1 2 3 - 1 +4 chr1 2 3 - 1 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=7, step=1) +Expected index +RangeIndex(start=0, stop=5, step=1) +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp0nt_95tm/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp0nt_95tm/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 1 2 + 1 +1 chr1 1 2 - 1 +2 chr1 1 2 - 1 +3 chr1 1 2 - 1 +4 chr1 2 3 + 1 +5 chr1 2 3 - 1 +6 chr1 2 3 - 1 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 1 | 2 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 1 | 2 | a | 0 | ... | +| chr1 | 1 | 2 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 1 | 2 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 7 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 1 2 + 1 +2 chr1 1 2 - 1 +3 chr1 1 2 - 1 +6 chr1 1 2 - 1 +1 chr1 2 3 + 1 +4 chr1 2 3 - 1 +5 chr1 2 3 - 1 +df2 + Chromosome Start End Strand Distance +0 chr1 1 2 + 1 +1 chr1 1 2 - 1 +2 chr1 1 2 - 1 +3 chr1 1 2 - 1 +4 chr1 2 3 + 1 +5 chr1 2 3 - 1 +6 chr1 2 3 - 1 +Actual + Chromosome Start End Strand Distance +0 chr1 1 2 + 1 +1 chr1 1 2 - 1 +2 chr1 1 2 - 1 +3 chr1 1 2 - 1 +4 chr1 2 3 + 1 +5 chr1 2 3 - 1 +6 chr1 2 3 - 1 + +Expected + Chromosome Start End Strand Distance +0 chr1 1 2 + 1 +1 chr1 1 2 - 1 +2 chr1 1 2 - 1 +3 chr1 1 2 - 1 +4 chr1 2 3 + 1 +5 chr1 2 3 - 1 +6 chr1 2 3 - 1 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=7, step=1) +Expected index +RangeIndex(start=0, stop=7, step=1) +index equal [ True True True True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpg6_t8cme/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpg6_t8cme/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 +4 chr1 2 3 + 1 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 1 | 2 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 3 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 +1 chr1 2 3 + 1 +2 chr1 2 3 + 1 +df2 + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 +4 chr1 2 3 + 1 +Actual + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 +1 chr1 2 3 + 1 +2 chr1 2 3 + 1 + +Expected + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 +1 chr1 2 3 + 1 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=3, step=1) +Expected index +RangeIndex(start=0, stop=2, step=1) +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp35ervxuo/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp35ervxuo/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp37swx6zz/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp37swx6zz/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +1 chr1 4319346 4323138 - 1883593 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 4319346 | 4323138 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 4319346 4323138 - 1883593 +df2 + Chromosome Start End Strand Distance +1 chr1 4319346 4323138 - 1883593 +Actual + Chromosome Start End Strand Distance +0 chr1 4319346 4323138 - 1883593 + +Expected + Chromosome Start End Strand Distance +0 chr1 4319346 4323138 - 1883593 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=1, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +index equal [ True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp349ss66y/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp349ss66y/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpdl69zdlm/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpdl69zdlm/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp2hdc931e/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp2hdc931e/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmps2aap7vo/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmps2aap7vo/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpi55rn9ap/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpi55rn9ap/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpbg2_4tgm/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpbg2_4tgm/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpe9ov1vk8/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpe9ov1vk8/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 7000313 7002341 + 1422243 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 7000313 | 7002341 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 7000313 7002341 + 1422243 +df2 + Chromosome Start End Strand Distance +0 chr1 7000313 7002341 + 1422243 +Actual + Chromosome Start End Strand Distance +0 chr1 7000313 7002341 + 1422243 + +Expected + Chromosome Start End Strand Distance +0 chr1 7000313 7002341 + 1422243 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=1, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +index equal [ True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpuqgeey2x/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpuqgeey2x/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 7000313 7002341 + 831728 +1 chr1 7000313 7002341 + 2514066 +7 chr6 10000000 10005101 + 5252061 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 7000313 | 7002341 | a | 0 | ... | +| chr1 | 7000313 | 7002341 | a | 0 | ... | +| chr6 | 10000000 | 10005101 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 3 rows and 12 columns from 2 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 7000313 7002341 + 831728 +1 chr1 7000313 7002341 + 2514066 +2 chr6 10000000 10005101 + 5252061 +df2 + Chromosome Start End Strand Distance +0 chr1 7000313 7002341 + 831728 +1 chr1 7000313 7002341 + 2514066 +7 chr6 10000000 10005101 + 5252061 +Actual + Chromosome Start End Strand Distance +0 chr1 7000313 7002341 + 831728 +1 chr1 7000313 7002341 + 2514066 +2 chr6 10000000 10005101 + 5252061 + +Expected + Chromosome Start End Strand Distance +0 chr1 7000313 7002341 + 831728 +1 chr1 7000313 7002341 + 2514066 +2 chr6 10000000 10005101 + 5252061 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=3, step=1) +Expected index +RangeIndex(start=0, stop=3, step=1) +index equal [ True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp8w3irlkt/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp8w3irlkt/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 7000313 7002341 + 831728 +1 chr1 7000313 7002341 + 2514066 +3 chr18 3928662 3930690 + 3713310 +7 chr6 10000000 10005101 + 5252061 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 7000313 | 7002341 | a | 0 | ... | +| chr1 | 7000313 | 7002341 | a | 0 | ... | +| chr6 | 10000000 | 10005101 | a | 0 | ... | +| chr18 | 3928662 | 3930690 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 4 rows and 12 columns from 3 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +3 chr18 3928662 3930690 + 3713310 +0 chr1 7000313 7002341 + 831728 +1 chr1 7000313 7002341 + 2514066 +2 chr6 10000000 10005101 + 5252061 +df2 + Chromosome Start End Strand Distance +3 chr18 3928662 3930690 + 3713310 +0 chr1 7000313 7002341 + 831728 +1 chr1 7000313 7002341 + 2514066 +7 chr6 10000000 10005101 + 5252061 +Actual + Chromosome Start End Strand Distance +0 chr1 7000313 7002341 + 831728 +1 chr1 7000313 7002341 + 2514066 +2 chr18 3928662 3930690 + 3713310 +3 chr6 10000000 10005101 + 5252061 + +Expected + Chromosome Start End Strand Distance +0 chr1 7000313 7002341 + 831728 +1 chr1 7000313 7002341 + 2514066 +2 chr18 3928662 3930690 + 3713310 +3 chr6 10000000 10005101 + 5252061 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=4, step=1) +Expected index +RangeIndex(start=0, stop=4, step=1) +index equal [ True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpuh6vvfjd/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpuh6vvfjd/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +5 chr2 17 18 + 16 +6 chr2 17 18 + 16 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr2 | 17 | 18 | a | 0 | ... | +| chr2 | 17 | 18 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr2 17 18 + 16 +1 chr2 17 18 + 16 +df2 + Chromosome Start End Strand Distance +5 chr2 17 18 + 16 +6 chr2 17 18 + 16 +Actual + Chromosome Start End Strand Distance +0 chr2 17 18 + 16 +1 chr2 17 18 + 16 + +Expected + Chromosome Start End Strand Distance +0 chr2 17 18 + 16 +1 chr2 17 18 + 16 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=2, step=1) +Expected index +RangeIndex(start=0, stop=2, step=1) +index equal [ True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp_t5dlwky/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp_t5dlwky/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 3 4 + 14 +4 chr1 17 18 - 14 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 3 | 4 | a | 0 | ... | +| chr1 | 17 | 18 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 3 4 + 14 +1 chr1 17 18 - 14 +df2 + Chromosome Start End Strand Distance +0 chr1 3 4 + 14 +4 chr1 17 18 - 14 +Actual + Chromosome Start End Strand Distance +0 chr1 3 4 + 14 +1 chr1 17 18 - 14 + +Expected + Chromosome Start End Strand Distance +0 chr1 3 4 + 14 +1 chr1 17 18 - 14 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=2, step=1) +Expected index +RangeIndex(start=0, stop=2, step=1) +index equal [ True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpf6jgkcag/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpf6jgkcag/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpibajwfgk/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpibajwfgk/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 115779 123397 + 1368579 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 115779 | 123397 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 115779 123397 + 1368579 +df2 + Chromosome Start End Strand Distance +0 chr1 115779 123397 + 1368579 +Actual + Chromosome Start End Strand Distance +0 chr1 115779 123397 + 1368579 + +Expected + Chromosome Start End Strand Distance +0 chr1 115779 123397 + 1368579 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=1, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +index equal [ True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpqfoimbu7/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpqfoimbu7/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 26102 26104 + 1465872 +1 chr1 225848 233386 + 1258590 +2 chr1 1491975 1501799 - 95683 +3 chr1 1491975 1501799 - 567932 +4 chr1 1597481 1604806 + 95683 +5 chr1 2069730 2073149 + 567932 +6 chr1 3696333 3698956 + 2194535 +7 chr1 7172683 7180694 + 5670885 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 7172683 | 7180694 | a | 0 | ... | +| chr1 | 2069730 | 2073149 | a | 0 | ... | +| chr1 | 3696333 | 3698956 | a | 0 | ... | +| chr1 | 225848 | 233386 | a | 0 | ... | +| chr1 | 1597481 | 1604806 | a | 0 | ... | +| chr1 | 26102 | 26104 | a | 0 | ... | +| chr1 | 1491975 | 1501799 | a | 0 | ... | +| chr1 | 1491975 | 1501799 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 8 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +5 chr1 26102 26104 + 1465872 +3 chr1 225848 233386 + 1258590 +6 chr1 1491975 1501799 - 95683 +7 chr1 1491975 1501799 - 567932 +4 chr1 1597481 1604806 + 95683 +1 chr1 2069730 2073149 + 567932 +2 chr1 3696333 3698956 + 2194535 +0 chr1 7172683 7180694 + 5670885 +df2 + Chromosome Start End Strand Distance +0 chr1 26102 26104 + 1465872 +1 chr1 225848 233386 + 1258590 +2 chr1 1491975 1501799 - 95683 +3 chr1 1491975 1501799 - 567932 +4 chr1 1597481 1604806 + 95683 +5 chr1 2069730 2073149 + 567932 +6 chr1 3696333 3698956 + 2194535 +7 chr1 7172683 7180694 + 5670885 +Actual + Chromosome Start End Strand Distance +0 chr1 26102 26104 + 1465872 +1 chr1 225848 233386 + 1258590 +2 chr1 1491975 1501799 - 95683 +3 chr1 1491975 1501799 - 567932 +4 chr1 1597481 1604806 + 95683 +5 chr1 2069730 2073149 + 567932 +6 chr1 3696333 3698956 + 2194535 +7 chr1 7172683 7180694 + 5670885 + +Expected + Chromosome Start End Strand Distance +0 chr1 26102 26104 + 1465872 +1 chr1 225848 233386 + 1258590 +2 chr1 1491975 1501799 - 95683 +3 chr1 1491975 1501799 - 567932 +4 chr1 1597481 1604806 + 95683 +5 chr1 2069730 2073149 + 567932 +6 chr1 3696333 3698956 + 2194535 +7 chr1 7172683 7180694 + 5670885 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=8, step=1) +Expected index +RangeIndex(start=0, stop=8, step=1) +index equal [ True True True True True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpeelclumg/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpeelclumg/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 26102 26104 + 1465872 +1 chr1 225848 233386 + 1258590 +2 chr1 1491975 1501799 - 95683 +3 chr1 1491975 1501799 - 567932 +4 chr1 1597481 1604806 + 99678 +5 chr1 2069730 2073149 + 571927 +6 chr1 3696333 3698956 + 2198530 +7 chr1 7172683 7180694 + 5674880 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 7172683 | 7180694 | a | 0 | ... | +| chr1 | 2069730 | 2073149 | a | 0 | ... | +| chr1 | 3696333 | 3698956 | a | 0 | ... | +| chr1 | 225848 | 233386 | a | 0 | ... | +| chr1 | 1597481 | 1604806 | a | 0 | ... | +| chr1 | 26102 | 26104 | a | 0 | ... | +| chr1 | 1491975 | 1501799 | a | 0 | ... | +| chr1 | 1491975 | 1501799 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 8 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +5 chr1 26102 26104 + 1465872 +3 chr1 225848 233386 + 1258590 +6 chr1 1491975 1501799 - 95683 +7 chr1 1491975 1501799 - 567932 +4 chr1 1597481 1604806 + 99678 +1 chr1 2069730 2073149 + 571927 +2 chr1 3696333 3698956 + 2198530 +0 chr1 7172683 7180694 + 5674880 +df2 + Chromosome Start End Strand Distance +0 chr1 26102 26104 + 1465872 +1 chr1 225848 233386 + 1258590 +2 chr1 1491975 1501799 - 95683 +3 chr1 1491975 1501799 - 567932 +4 chr1 1597481 1604806 + 99678 +5 chr1 2069730 2073149 + 571927 +6 chr1 3696333 3698956 + 2198530 +7 chr1 7172683 7180694 + 5674880 +Actual + Chromosome Start End Strand Distance +0 chr1 26102 26104 + 1465872 +1 chr1 225848 233386 + 1258590 +2 chr1 1491975 1501799 - 95683 +3 chr1 1491975 1501799 - 567932 +4 chr1 1597481 1604806 + 99678 +5 chr1 2069730 2073149 + 571927 +6 chr1 3696333 3698956 + 2198530 +7 chr1 7172683 7180694 + 5674880 + +Expected + Chromosome Start End Strand Distance +0 chr1 26102 26104 + 1465872 +1 chr1 225848 233386 + 1258590 +2 chr1 1491975 1501799 - 95683 +3 chr1 1491975 1501799 - 567932 +4 chr1 1597481 1604806 + 99678 +5 chr1 2069730 2073149 + 571927 +6 chr1 3696333 3698956 + 2198530 +7 chr1 7172683 7180694 + 5674880 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=8, step=1) +Expected index +RangeIndex(start=0, stop=8, step=1) +index equal [ True True True True True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpiwl9209n/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpiwl9209n/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 26102 26204 + 1465772 +1 chr1 225848 226731 + 1265245 +2 chr1 1491975 1497804 - 99678 +3 chr1 1491975 1497804 - 571927 +4 chr1 1597481 1603722 + 99678 +5 chr1 2069730 2077815 + 571927 +6 chr1 3696333 3699406 + 2198530 +7 chr1 7172683 7175244 + 5674880 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 7172683 | 7175244 | a | 0 | ... | +| chr1 | 2069730 | 2077815 | a | 0 | ... | +| chr1 | 3696333 | 3699406 | a | 0 | ... | +| chr1 | 225848 | 226731 | a | 0 | ... | +| chr1 | 1597481 | 1603722 | a | 0 | ... | +| chr1 | 26102 | 26204 | a | 0 | ... | +| chr1 | 1491975 | 1497804 | a | 0 | ... | +| chr1 | 1491975 | 1497804 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 8 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +5 chr1 26102 26204 + 1465772 +3 chr1 225848 226731 + 1265245 +6 chr1 1491975 1497804 - 99678 +7 chr1 1491975 1497804 - 571927 +4 chr1 1597481 1603722 + 99678 +1 chr1 2069730 2077815 + 571927 +2 chr1 3696333 3699406 + 2198530 +0 chr1 7172683 7175244 + 5674880 +df2 + Chromosome Start End Strand Distance +0 chr1 26102 26204 + 1465772 +1 chr1 225848 226731 + 1265245 +2 chr1 1491975 1497804 - 99678 +3 chr1 1491975 1497804 - 571927 +4 chr1 1597481 1603722 + 99678 +5 chr1 2069730 2077815 + 571927 +6 chr1 3696333 3699406 + 2198530 +7 chr1 7172683 7175244 + 5674880 +Actual + Chromosome Start End Strand Distance +0 chr1 26102 26204 + 1465772 +1 chr1 225848 226731 + 1265245 +2 chr1 1491975 1497804 - 99678 +3 chr1 1491975 1497804 - 571927 +4 chr1 1597481 1603722 + 99678 +5 chr1 2069730 2077815 + 571927 +6 chr1 3696333 3699406 + 2198530 +7 chr1 7172683 7175244 + 5674880 + +Expected + Chromosome Start End Strand Distance +0 chr1 26102 26204 + 1465772 +1 chr1 225848 226731 + 1265245 +2 chr1 1491975 1497804 - 99678 +3 chr1 1491975 1497804 - 571927 +4 chr1 1597481 1603722 + 99678 +5 chr1 2069730 2077815 + 571927 +6 chr1 3696333 3699406 + 2198530 +7 chr1 7172683 7175244 + 5674880 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=8, step=1) +Expected index +RangeIndex(start=0, stop=8, step=1) +index equal [ True True True True True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp1tug079a/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp1tug079a/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 26102 26204 + 199645 +1 chr1 26102 26204 + 1571278 +2 chr1 225848 226731 + 199645 +3 chr1 225848 226731 + 1370751 +4 chr1 1491975 1497804 - 571927 +5 chr1 1491975 1497804 - 2198530 +6 chr1 1597481 1603722 + 1370751 +7 chr1 1597481 1603722 + 1571278 +8 chr1 2069730 2077815 + 466009 +9 chr1 2069730 2077815 + 1843000 +10 chr1 3696333 3699406 + 2092612 +11 chr1 3696333 3699406 + 3469603 +12 chr1 7172683 7175244 + 5568962 +13 chr1 7172683 7175244 + 6945953 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 7172683 | 7175244 | a | 0 | ... | +| chr1 | 7172683 | 7175244 | a | 0 | ... | +| chr1 | 2069730 | 2077815 | a | 0 | ... | +| chr1 | 2069730 | 2077815 | a | 0 | ... | +| ... | ... | ... | ... | ... | ... | +| chr1 | 26102 | 26204 | a | 0 | ... | +| chr1 | 26102 | 26204 | a | 0 | ... | +| chr1 | 1491975 | 1497804 | a | 0 | ... | +| chr1 | 1491975 | 1497804 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 14 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +10 chr1 26102 26204 + 199645 +11 chr1 26102 26204 + 1571278 +6 chr1 225848 226731 + 199645 +7 chr1 225848 226731 + 1370751 +12 chr1 1491975 1497804 - 571927 +13 chr1 1491975 1497804 - 2198530 +8 chr1 1597481 1603722 + 1370751 +9 chr1 1597481 1603722 + 1571278 +2 chr1 2069730 2077815 + 466009 +3 chr1 2069730 2077815 + 1843000 +4 chr1 3696333 3699406 + 2092612 +5 chr1 3696333 3699406 + 3469603 +0 chr1 7172683 7175244 + 5568962 +1 chr1 7172683 7175244 + 6945953 +df2 + Chromosome Start End Strand Distance +0 chr1 26102 26204 + 199645 +1 chr1 26102 26204 + 1571278 +2 chr1 225848 226731 + 199645 +3 chr1 225848 226731 + 1370751 +4 chr1 1491975 1497804 - 571927 +5 chr1 1491975 1497804 - 2198530 +6 chr1 1597481 1603722 + 1370751 +7 chr1 1597481 1603722 + 1571278 +8 chr1 2069730 2077815 + 466009 +9 chr1 2069730 2077815 + 1843000 +10 chr1 3696333 3699406 + 2092612 +11 chr1 3696333 3699406 + 3469603 +12 chr1 7172683 7175244 + 5568962 +13 chr1 7172683 7175244 + 6945953 +Actual + Chromosome Start End Strand Distance +0 chr1 26102 26204 + 199645 +1 chr1 26102 26204 + 1571278 +2 chr1 225848 226731 + 199645 +3 chr1 225848 226731 + 1370751 +4 chr1 1491975 1497804 - 571927 +5 chr1 1491975 1497804 - 2198530 +6 chr1 1597481 1603722 + 1370751 +7 chr1 1597481 1603722 + 1571278 +8 chr1 2069730 2077815 + 466009 +9 chr1 2069730 2077815 + 1843000 +10 chr1 3696333 3699406 + 2092612 +11 chr1 3696333 3699406 + 3469603 +12 chr1 7172683 7175244 + 5568962 +13 chr1 7172683 7175244 + 6945953 + +Expected + Chromosome Start End Strand Distance +0 chr1 26102 26204 + 199645 +1 chr1 26102 26204 + 1571278 +2 chr1 225848 226731 + 199645 +3 chr1 225848 226731 + 1370751 +4 chr1 1491975 1497804 - 571927 +5 chr1 1491975 1497804 - 2198530 +6 chr1 1597481 1603722 + 1370751 +7 chr1 1597481 1603722 + 1571278 +8 chr1 2069730 2077815 + 466009 +9 chr1 2069730 2077815 + 1843000 +10 chr1 3696333 3699406 + 2092612 +11 chr1 3696333 3699406 + 3469603 +12 chr1 7172683 7175244 + 5568962 +13 chr1 7172683 7175244 + 6945953 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=14, step=1) +Expected index +RangeIndex(start=0, stop=14, step=1) +index equal [ True True True True True True True True True True True True + True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp1utvf1rr/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp1utvf1rr/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp5xj5jrqw/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp5xj5jrqw/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpre188_ni/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpre188_ni/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpnfc1hqmm/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpnfc1hqmm/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpan9791j0/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpan9791j0/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpor0cfezf/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpor0cfezf/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 8109416 8111762 + 5138651 +1 chr1 8109416 8111762 + 6726454 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 8109416 | 8111762 | a | 0 | ... | +| chr1 | 8109416 | 8111762 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 8109416 8111762 + 5138651 +1 chr1 8109416 8111762 + 6726454 +df2 + Chromosome Start End Strand Distance +0 chr1 8109416 8111762 + 5138651 +1 chr1 8109416 8111762 + 6726454 +Actual + Chromosome Start End Strand Distance +0 chr1 8109416 8111762 + 5138651 +1 chr1 8109416 8111762 + 6726454 + +Expected + Chromosome Start End Strand Distance +0 chr1 8109416 8111762 + 5138651 +1 chr1 8109416 8111762 + 6726454 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=2, step=1) +Expected index +RangeIndex(start=0, stop=2, step=1) +index equal [ True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpj13e274w/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpj13e274w/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 8109416 8111762 + 8109415 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 8109416 | 8111762 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 8109416 8111762 + 8109415 +df2 + Chromosome Start End Strand Distance +0 chr1 8109416 8111762 + 8109415 +Actual + Chromosome Start End Strand Distance +0 chr1 8109416 8111762 + 8109415 + +Expected + Chromosome Start End Strand Distance +0 chr1 8109416 8111762 + 8109415 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=1, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +index equal [ True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp6d7158lh/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp6d7158lh/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 8109416 8111762 + 8109415 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 8109416 | 8111762 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 8109416 8111762 + 8109415 +df2 + Chromosome Start End Strand Distance +0 chr1 8109416 8111762 + 8109415 +Actual + Chromosome Start End Strand Distance +0 chr1 8109416 8111762 + 8109415 + +Expected + Chromosome Start End Strand Distance +0 chr1 8109416 8111762 + 8109415 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=1, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +index equal [ True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp0stt9gje/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp0stt9gje/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpr4bzpmwa/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpr4bzpmwa/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmptxrpxj4q/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmptxrpxj4q/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmptjo9qzux/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmptjo9qzux/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +8 chr11 697329 707080 + 3001971 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr11 | 697329 | 707080 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr11 697329 707080 + 3001971 +df2 + Chromosome Start End Strand Distance +8 chr11 697329 707080 + 3001971 +Actual + Chromosome Start End Strand Distance +0 chr11 697329 707080 + 3001971 + +Expected + Chromosome Start End Strand Distance +0 chr11 697329 707080 + 3001971 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=1, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +index equal [ True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpl3_mxeye/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpl3_mxeye/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpfhah5y86/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpfhah5y86/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp6ubup_pf/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp6ubup_pf/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 10762 10764 - 686566 +1 chr1 10762 10764 - 4095895 +2 chr1 697329 707080 + 686566 +3 chr1 697329 707080 + 1616859 +4 chr1 2323938 2324185 - 1616859 +5 chr1 2323938 2324185 - 1782474 +6 chr1 4106658 4113148 + 504460 +7 chr1 4106658 4113148 + 1782474 +8 chr1 4617607 4618446 - 504460 +9 chr1 4617607 4618446 - 1581473 +10 chr1 6199918 6206482 + 1581473 +11 chr1 6199918 6206482 + 2482474 +12 chr1 7283391 7283782 + 1405174 +13 chr1 7283391 7283782 + 2307602 +14 chr1 7499578 7504553 + 1184403 +15 chr1 7499578 7504553 + 2086831 +16 chr1 8688955 8692928 - 88945 +17 chr1 8688955 8692928 - 1184403 +18 chr1 8781872 8789639 + 88945 +19 chr1 8781872 8789639 + 801745 +20 chr1 9591383 9598964 - 801745 +21 chr1 9591383 9598964 - 2086831 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 8781872 | 8789639 | a | 0 | ... | +| chr1 | 8781872 | 8789639 | a | 0 | ... | +| chr1 | 4106658 | 4113148 | a | 0 | ... | +| chr1 | 4106658 | 4113148 | a | 0 | ... | +| ... | ... | ... | ... | ... | ... | +| chr1 | 4617607 | 4618446 | a | 0 | ... | +| chr1 | 4617607 | 4618446 | a | 0 | ... | +| chr1 | 2323938 | 2324185 | a | 0 | ... | +| chr1 | 2323938 | 2324185 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 22 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +16 chr1 10762 10764 - 686566 +17 chr1 10762 10764 - 4095895 +6 chr1 697329 707080 + 686566 +7 chr1 697329 707080 + 1616859 +20 chr1 2323938 2324185 - 1616859 +21 chr1 2323938 2324185 - 1782474 +2 chr1 4106658 4113148 + 504460 +3 chr1 4106658 4113148 + 1782474 +18 chr1 4617607 4618446 - 504460 +19 chr1 4617607 4618446 - 1581473 +8 chr1 6199918 6206482 + 1581473 +9 chr1 6199918 6206482 + 2482474 +10 chr1 7283391 7283782 + 1405174 +11 chr1 7283391 7283782 + 2307602 +4 chr1 7499578 7504553 + 1184403 +5 chr1 7499578 7504553 + 2086831 +14 chr1 8688955 8692928 - 88945 +15 chr1 8688955 8692928 - 1184403 +0 chr1 8781872 8789639 + 88945 +1 chr1 8781872 8789639 + 801745 +12 chr1 9591383 9598964 - 801745 +13 chr1 9591383 9598964 - 2086831 +df2 + Chromosome Start End Strand Distance +0 chr1 10762 10764 - 686566 +1 chr1 10762 10764 - 4095895 +2 chr1 697329 707080 + 686566 +3 chr1 697329 707080 + 1616859 +4 chr1 2323938 2324185 - 1616859 +5 chr1 2323938 2324185 - 1782474 +6 chr1 4106658 4113148 + 504460 +7 chr1 4106658 4113148 + 1782474 +8 chr1 4617607 4618446 - 504460 +9 chr1 4617607 4618446 - 1581473 +10 chr1 6199918 6206482 + 1581473 +11 chr1 6199918 6206482 + 2482474 +12 chr1 7283391 7283782 + 1405174 +13 chr1 7283391 7283782 + 2307602 +14 chr1 7499578 7504553 + 1184403 +15 chr1 7499578 7504553 + 2086831 +16 chr1 8688955 8692928 - 88945 +17 chr1 8688955 8692928 - 1184403 +18 chr1 8781872 8789639 + 88945 +19 chr1 8781872 8789639 + 801745 +20 chr1 9591383 9598964 - 801745 +21 chr1 9591383 9598964 - 2086831 +Actual + Chromosome Start End Strand Distance +0 chr1 10762 10764 - 686566 +1 chr1 10762 10764 - 4095895 +2 chr1 697329 707080 + 686566 +3 chr1 697329 707080 + 1616859 +4 chr1 2323938 2324185 - 1616859 +5 chr1 2323938 2324185 - 1782474 +6 chr1 4106658 4113148 + 504460 +7 chr1 4106658 4113148 + 1782474 +8 chr1 4617607 4618446 - 504460 +9 chr1 4617607 4618446 - 1581473 +10 chr1 6199918 6206482 + 1581473 +11 chr1 6199918 6206482 + 2482474 +12 chr1 7283391 7283782 + 1405174 +13 chr1 7283391 7283782 + 2307602 +14 chr1 7499578 7504553 + 1184403 +15 chr1 7499578 7504553 + 2086831 +16 chr1 8688955 8692928 - 88945 +17 chr1 8688955 8692928 - 1184403 +18 chr1 8781872 8789639 + 88945 +19 chr1 8781872 8789639 + 801745 +20 chr1 9591383 9598964 - 801745 +21 chr1 9591383 9598964 - 2086831 + +Expected + Chromosome Start End Strand Distance +0 chr1 10762 10764 - 686566 +1 chr1 10762 10764 - 4095895 +2 chr1 697329 707080 + 686566 +3 chr1 697329 707080 + 1616859 +4 chr1 2323938 2324185 - 1616859 +5 chr1 2323938 2324185 - 1782474 +6 chr1 4106658 4113148 + 504460 +7 chr1 4106658 4113148 + 1782474 +8 chr1 4617607 4618446 - 504460 +9 chr1 4617607 4618446 - 1581473 +10 chr1 6199918 6206482 + 1581473 +11 chr1 6199918 6206482 + 2482474 +12 chr1 7283391 7283782 + 1405174 +13 chr1 7283391 7283782 + 2307602 +14 chr1 7499578 7504553 + 1184403 +15 chr1 7499578 7504553 + 2086831 +16 chr1 8688955 8692928 - 88945 +17 chr1 8688955 8692928 - 1184403 +18 chr1 8781872 8789639 + 88945 +19 chr1 8781872 8789639 + 801745 +20 chr1 9591383 9598964 - 801745 +21 chr1 9591383 9598964 - 2086831 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=22, step=1) +Expected index +RangeIndex(start=0, stop=22, step=1) +index equal [ True True True True True True True True True True True True + True True True True True True True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpva3oqq1n/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpva3oqq1n/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 10762 10764 - 686566 +1 chr1 10762 10764 - 4095895 +2 chr1 697329 707080 + 686566 +3 chr1 697329 707080 + 1616859 +4 chr1 2323938 2324185 - 1616859 +5 chr1 2323938 2324185 - 1782474 +6 chr1 4106658 4113148 + 504460 +7 chr1 4106658 4113148 + 1782474 +8 chr1 4617607 4618446 - 504460 +9 chr1 4617607 4618446 - 1581473 +10 chr1 6199918 6206482 + 1581473 +11 chr1 6199918 6206482 + 2482474 +12 chr1 7283391 7283782 + 1405174 +13 chr1 7283391 7283782 + 2307602 +14 chr1 7499578 7504553 + 1184403 +15 chr1 7499578 7504553 + 2086831 +16 chr1 8688955 8692928 - 88945 +17 chr1 8688955 8692928 - 1184403 +18 chr1 8781872 8789639 + 88945 +19 chr1 8781872 8789639 + 801745 +20 chr1 9591383 9598964 - 801745 +21 chr1 9591383 9598964 - 2086831 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 8781872 | 8789639 | a | 0 | ... | +| chr1 | 8781872 | 8789639 | a | 0 | ... | +| chr1 | 4106658 | 4113148 | a | 0 | ... | +| chr1 | 4106658 | 4113148 | a | 0 | ... | +| ... | ... | ... | ... | ... | ... | +| chr1 | 4617607 | 4618446 | a | 0 | ... | +| chr1 | 4617607 | 4618446 | a | 0 | ... | +| chr1 | 2323938 | 2324185 | a | 0 | ... | +| chr1 | 2323938 | 2324185 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 22 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +16 chr1 10762 10764 - 686566 +17 chr1 10762 10764 - 4095895 +6 chr1 697329 707080 + 686566 +7 chr1 697329 707080 + 1616859 +20 chr1 2323938 2324185 - 1616859 +21 chr1 2323938 2324185 - 1782474 +2 chr1 4106658 4113148 + 504460 +3 chr1 4106658 4113148 + 1782474 +18 chr1 4617607 4618446 - 504460 +19 chr1 4617607 4618446 - 1581473 +8 chr1 6199918 6206482 + 1581473 +9 chr1 6199918 6206482 + 2482474 +10 chr1 7283391 7283782 + 1405174 +11 chr1 7283391 7283782 + 2307602 +4 chr1 7499578 7504553 + 1184403 +5 chr1 7499578 7504553 + 2086831 +14 chr1 8688955 8692928 - 88945 +15 chr1 8688955 8692928 - 1184403 +0 chr1 8781872 8789639 + 88945 +1 chr1 8781872 8789639 + 801745 +12 chr1 9591383 9598964 - 801745 +13 chr1 9591383 9598964 - 2086831 +df2 + Chromosome Start End Strand Distance +0 chr1 10762 10764 - 686566 +1 chr1 10762 10764 - 4095895 +2 chr1 697329 707080 + 686566 +3 chr1 697329 707080 + 1616859 +4 chr1 2323938 2324185 - 1616859 +5 chr1 2323938 2324185 - 1782474 +6 chr1 4106658 4113148 + 504460 +7 chr1 4106658 4113148 + 1782474 +8 chr1 4617607 4618446 - 504460 +9 chr1 4617607 4618446 - 1581473 +10 chr1 6199918 6206482 + 1581473 +11 chr1 6199918 6206482 + 2482474 +12 chr1 7283391 7283782 + 1405174 +13 chr1 7283391 7283782 + 2307602 +14 chr1 7499578 7504553 + 1184403 +15 chr1 7499578 7504553 + 2086831 +16 chr1 8688955 8692928 - 88945 +17 chr1 8688955 8692928 - 1184403 +18 chr1 8781872 8789639 + 88945 +19 chr1 8781872 8789639 + 801745 +20 chr1 9591383 9598964 - 801745 +21 chr1 9591383 9598964 - 2086831 +Actual + Chromosome Start End Strand Distance +0 chr1 10762 10764 - 686566 +1 chr1 10762 10764 - 4095895 +2 chr1 697329 707080 + 686566 +3 chr1 697329 707080 + 1616859 +4 chr1 2323938 2324185 - 1616859 +5 chr1 2323938 2324185 - 1782474 +6 chr1 4106658 4113148 + 504460 +7 chr1 4106658 4113148 + 1782474 +8 chr1 4617607 4618446 - 504460 +9 chr1 4617607 4618446 - 1581473 +10 chr1 6199918 6206482 + 1581473 +11 chr1 6199918 6206482 + 2482474 +12 chr1 7283391 7283782 + 1405174 +13 chr1 7283391 7283782 + 2307602 +14 chr1 7499578 7504553 + 1184403 +15 chr1 7499578 7504553 + 2086831 +16 chr1 8688955 8692928 - 88945 +17 chr1 8688955 8692928 - 1184403 +18 chr1 8781872 8789639 + 88945 +19 chr1 8781872 8789639 + 801745 +20 chr1 9591383 9598964 - 801745 +21 chr1 9591383 9598964 - 2086831 + +Expected + Chromosome Start End Strand Distance +0 chr1 10762 10764 - 686566 +1 chr1 10762 10764 - 4095895 +2 chr1 697329 707080 + 686566 +3 chr1 697329 707080 + 1616859 +4 chr1 2323938 2324185 - 1616859 +5 chr1 2323938 2324185 - 1782474 +6 chr1 4106658 4113148 + 504460 +7 chr1 4106658 4113148 + 1782474 +8 chr1 4617607 4618446 - 504460 +9 chr1 4617607 4618446 - 1581473 +10 chr1 6199918 6206482 + 1581473 +11 chr1 6199918 6206482 + 2482474 +12 chr1 7283391 7283782 + 1405174 +13 chr1 7283391 7283782 + 2307602 +14 chr1 7499578 7504553 + 1184403 +15 chr1 7499578 7504553 + 2086831 +16 chr1 8688955 8692928 - 88945 +17 chr1 8688955 8692928 - 1184403 +18 chr1 8781872 8789639 + 88945 +19 chr1 8781872 8789639 + 801745 +20 chr1 9591383 9598964 - 801745 +21 chr1 9591383 9598964 - 2086831 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=22, step=1) +Expected index +RangeIndex(start=0, stop=22, step=1) +index equal [ True True True True True True True True True True True True + True True True True True True True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpog866s3f/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpog866s3f/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 2547930 2548670 - 1986752 +1 chr1 2547930 2548670 - 2326040 +2 chr1 2547930 2549135 + 1683254 +3 chr1 2547930 2549135 + 2726294 +4 chr1 2547930 2549135 - 1986287 +5 chr1 2547930 2549135 - 2325575 +6 chr1 8942634 8943839 + 3000509 +7 chr1 8942634 8943839 + 3661699 +8 chr11 2547930 2549135 + 1749493 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 2547930 | 2549135 | a | 0 | ... | +| chr1 | 2547930 | 2549135 | a | 0 | ... | +| chr1 | 8942634 | 8943839 | a | 0 | ... | +| chr1 | 8942634 | 8943839 | a | 0 | ... | +| ... | ... | ... | ... | ... | ... | +| chr1 | 2547930 | 2549135 | a | 0 | ... | +| chr1 | 2547930 | 2549135 | a | 0 | ... | +| chr1 | 2547930 | 2548670 | a | 0 | ... | +| chr1 | 2547930 | 2548670 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 9 rows and 12 columns from 2 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +6 chr1 2547930 2548670 - 1986752 +7 chr1 2547930 2548670 - 2326040 +0 chr1 2547930 2549135 + 1683254 +8 chr11 2547930 2549135 + 1749493 +4 chr1 2547930 2549135 - 1986287 +5 chr1 2547930 2549135 - 2325575 +1 chr1 2547930 2549135 + 2726294 +2 chr1 8942634 8943839 + 3000509 +3 chr1 8942634 8943839 + 3661699 +df2 + Chromosome Start End Strand Distance +0 chr1 2547930 2548670 - 1986752 +1 chr1 2547930 2548670 - 2326040 +2 chr1 2547930 2549135 + 1683254 +8 chr11 2547930 2549135 + 1749493 +4 chr1 2547930 2549135 - 1986287 +5 chr1 2547930 2549135 - 2325575 +3 chr1 2547930 2549135 + 2726294 +6 chr1 8942634 8943839 + 3000509 +7 chr1 8942634 8943839 + 3661699 +Actual + Chromosome Start End Strand Distance +0 chr1 2547930 2548670 - 1986752 +1 chr1 2547930 2548670 - 2326040 +2 chr1 2547930 2549135 + 1683254 +3 chr1 2547930 2549135 + 2726294 +4 chr1 2547930 2549135 - 1986287 +5 chr1 2547930 2549135 - 2325575 +6 chr1 8942634 8943839 + 3000509 +7 chr1 8942634 8943839 + 3661699 +8 chr11 2547930 2549135 + 1749493 + +Expected + Chromosome Start End Strand Distance +0 chr1 2547930 2548670 - 1986752 +1 chr1 2547930 2548670 - 2326040 +2 chr1 2547930 2549135 + 1683254 +3 chr1 2547930 2549135 + 2726294 +4 chr1 2547930 2549135 - 1986287 +5 chr1 2547930 2549135 - 2325575 +6 chr1 8942634 8943839 + 3000509 +7 chr1 8942634 8943839 + 3661699 +8 chr11 2547930 2549135 + 1749493 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=9, step=1) +Expected index +RangeIndex(start=0, stop=9, step=1) +index equal [ True True True True True True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp2uw06nhn/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp2uw06nhn/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpg7hnodpf/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpg7hnodpf/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpwi5y3izt/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpwi5y3izt/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +6 chr2 5 10 + 4 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr2 | 5 | 10 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr2 5 10 + 4 +df2 + Chromosome Start End Strand Distance +6 chr2 5 10 + 4 +Actual + Chromosome Start End Strand Distance +0 chr2 5 10 + 4 + +Expected + Chromosome Start End Strand Distance +0 chr2 5 10 + 4 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=1, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +index equal [ True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp1omgmwc1/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp1omgmwc1/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +5 chr2 5 10 - 4 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr2 | 5 | 10 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr2 5 10 - 4 +df2 + Chromosome Start End Strand Distance +5 chr2 5 10 - 4 +Actual + Chromosome Start End Strand Distance +0 chr2 5 10 - 4 + +Expected + Chromosome Start End Strand Distance +0 chr2 5 10 - 4 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=1, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +index equal [ True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp2b3mc1wp/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp2b3mc1wp/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpa7wq86d5/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpa7wq86d5/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpy4wckbbd/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpy4wckbbd/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 882753 892753 + 3389498 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 882753 | 892753 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 882753 892753 + 3389498 +df2 + Chromosome Start End Strand Distance +0 chr1 882753 892753 + 3389498 +Actual + Chromosome Start End Strand Distance +0 chr1 882753 892753 + 3389498 + +Expected + Chromosome Start End Strand Distance +0 chr1 882753 892753 + 3389498 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=1, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +index equal [ True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpsfyyywyc/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpsfyyywyc/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpof6724sq/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpof6724sq/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 21 22 + 20 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 21 | 22 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 21 22 + 20 +df2 + Chromosome Start End Strand Distance +0 chr1 21 22 + 20 +Actual + Chromosome Start End Strand Distance +0 chr1 21 22 + 20 + +Expected + Chromosome Start End Strand Distance +0 chr1 21 22 + 20 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=1, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +index equal [ True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpjw01ci9w/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpjw01ci9w/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 21 22 + 20 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 21 | 22 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 21 22 + 20 +df2 + Chromosome Start End Strand Distance +0 chr1 21 22 + 20 +Actual + Chromosome Start End Strand Distance +0 chr1 21 22 + 20 + +Expected + Chromosome Start End Strand Distance +0 chr1 21 22 + 20 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=1, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +index equal [ True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmperkclhil/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmperkclhil/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 21 22 + 20 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 21 | 22 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 21 22 + 20 +df2 + Chromosome Start End Strand Distance +0 chr1 21 22 + 20 +Actual + Chromosome Start End Strand Distance +0 chr1 21 22 + 20 + +Expected + Chromosome Start End Strand Distance +0 chr1 21 22 + 20 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=1, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +index equal [ True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp_b6j_633/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp_b6j_633/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 21 22 + 20 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 21 | 22 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 21 22 + 20 +df2 + Chromosome Start End Strand Distance +0 chr1 21 22 + 20 +Actual + Chromosome Start End Strand Distance +0 chr1 21 22 + 20 + +Expected + Chromosome Start End Strand Distance +0 chr1 21 22 + 20 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=1, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +index equal [ True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpovwkeihn/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpovwkeihn/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpe50eo1b2/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpe50eo1b2/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 6430994 6435468 - 984327 +1 chr1 6430994 6435468 - 1938718 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 6430994 | 6435468 | a | 0 | ... | +| chr1 | 6430994 | 6435468 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 6430994 6435468 - 984327 +1 chr1 6430994 6435468 - 1938718 +df2 + Chromosome Start End Strand Distance +0 chr1 6430994 6435468 - 984327 +1 chr1 6430994 6435468 - 1938718 +Actual + Chromosome Start End Strand Distance +0 chr1 6430994 6435468 - 984327 +1 chr1 6430994 6435468 - 1938718 + +Expected + Chromosome Start End Strand Distance +0 chr1 6430994 6435468 - 984327 +1 chr1 6430994 6435468 - 1938718 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=2, step=1) +Expected index +RangeIndex(start=0, stop=2, step=1) +index equal [ True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpzjkh91i7/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpzjkh91i7/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 6430994 6435468 - 984327 +1 chr1 6430994 6435468 - 1938718 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 6430994 | 6435468 | a | 0 | ... | +| chr1 | 6430994 | 6435468 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 6430994 6435468 - 984327 +1 chr1 6430994 6435468 - 1938718 +df2 + Chromosome Start End Strand Distance +0 chr1 6430994 6435468 - 984327 +1 chr1 6430994 6435468 - 1938718 +Actual + Chromosome Start End Strand Distance +0 chr1 6430994 6435468 - 984327 +1 chr1 6430994 6435468 - 1938718 + +Expected + Chromosome Start End Strand Distance +0 chr1 6430994 6435468 - 984327 +1 chr1 6430994 6435468 - 1938718 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=2, step=1) +Expected index +RangeIndex(start=0, stop=2, step=1) +index equal [ True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmptp0shb50/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmptp0shb50/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 6430994 6435468 - 984327 +1 chr1 6430994 6435468 - 1938718 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 6430994 | 6435468 | a | 0 | ... | +| chr1 | 6430994 | 6435468 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 6430994 6435468 - 984327 +1 chr1 6430994 6435468 - 1938718 +df2 + Chromosome Start End Strand Distance +0 chr1 6430994 6435468 - 984327 +1 chr1 6430994 6435468 - 1938718 +Actual + Chromosome Start End Strand Distance +0 chr1 6430994 6435468 - 984327 +1 chr1 6430994 6435468 - 1938718 + +Expected + Chromosome Start End Strand Distance +0 chr1 6430994 6435468 - 984327 +1 chr1 6430994 6435468 - 1938718 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=2, step=1) +Expected index +RangeIndex(start=0, stop=2, step=1) +index equal [ True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp7h2m5ieo/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp7h2m5ieo/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp5itsphzp/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp5itsphzp/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +1 chr1 8 9 + 7 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 8 | 9 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 8 9 + 7 +df2 + Chromosome Start End Strand Distance +1 chr1 8 9 + 7 +Actual + Chromosome Start End Strand Distance +0 chr1 8 9 + 7 + +Expected + Chromosome Start End Strand Distance +0 chr1 8 9 + 7 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=1, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +index equal [ True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpjylp239q/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpjylp239q/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmppeebvaoy/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmppeebvaoy/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmput4m1nf9/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmput4m1nf9/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 1 7417 - 2683602 +1 chr1 1 7417 - 3328502 +2 chr1 2 4787 + 2236361 +3 chr1 4326966 4330831 + 2077218 +4 chr1 5489432 5494152 - 2152827 +5 chr1 5489432 5494152 - 2794438 +6 chr1 7850294 7852099 - 4513689 +7 chr1 7850294 7852099 - 5155300 +8 chr1 10000000 10005885 - 6663395 +9 chr1 10000000 10005885 - 7305006 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 2 | 4787 | a | 0 | ... | +| chr1 | 4326966 | 4330831 | a | 0 | ... | +| chr1 | 1 | 7417 | a | 0 | ... | +| chr1 | 1 | 7417 | a | 0 | ... | +| ... | ... | ... | ... | ... | ... | +| chr1 | 7850294 | 7852099 | a | 0 | ... | +| chr1 | 7850294 | 7852099 | a | 0 | ... | +| chr1 | 10000000 | 10005885 | a | 0 | ... | +| chr1 | 10000000 | 10005885 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 10 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +2 chr1 1 7417 - 2683602 +3 chr1 1 7417 - 3328502 +0 chr1 2 4787 + 2236361 +1 chr1 4326966 4330831 + 2077218 +4 chr1 5489432 5494152 - 2152827 +5 chr1 5489432 5494152 - 2794438 +6 chr1 7850294 7852099 - 4513689 +7 chr1 7850294 7852099 - 5155300 +8 chr1 10000000 10005885 - 6663395 +9 chr1 10000000 10005885 - 7305006 +df2 + Chromosome Start End Strand Distance +0 chr1 1 7417 - 2683602 +1 chr1 1 7417 - 3328502 +2 chr1 2 4787 + 2236361 +3 chr1 4326966 4330831 + 2077218 +4 chr1 5489432 5494152 - 2152827 +5 chr1 5489432 5494152 - 2794438 +6 chr1 7850294 7852099 - 4513689 +7 chr1 7850294 7852099 - 5155300 +8 chr1 10000000 10005885 - 6663395 +9 chr1 10000000 10005885 - 7305006 +Actual + Chromosome Start End Strand Distance +0 chr1 1 7417 - 2683602 +1 chr1 1 7417 - 3328502 +2 chr1 2 4787 + 2236361 +3 chr1 4326966 4330831 + 2077218 +4 chr1 5489432 5494152 - 2152827 +5 chr1 5489432 5494152 - 2794438 +6 chr1 7850294 7852099 - 4513689 +7 chr1 7850294 7852099 - 5155300 +8 chr1 10000000 10005885 - 6663395 +9 chr1 10000000 10005885 - 7305006 + +Expected + Chromosome Start End Strand Distance +0 chr1 1 7417 - 2683602 +1 chr1 1 7417 - 3328502 +2 chr1 2 4787 + 2236361 +3 chr1 4326966 4330831 + 2077218 +4 chr1 5489432 5494152 - 2152827 +5 chr1 5489432 5494152 - 2794438 +6 chr1 7850294 7852099 - 4513689 +7 chr1 7850294 7852099 - 5155300 +8 chr1 10000000 10005885 - 6663395 +9 chr1 10000000 10005885 - 7305006 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=10, step=1) +Expected index +RangeIndex(start=0, stop=10, step=1) +index equal [ True True True True True True True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpfiberew3/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpfiberew3/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 1 7417 - 2233731 +1 chr1 1 7417 - 3328502 +2 chr1 2 4787 + 2686232 +3 chr1 4326966 4330831 + 1635948 +4 chr1 5489432 5494152 - 2153514 +5 chr1 5489432 5494152 - 3248285 +6 chr1 7850294 7852099 - 4514376 +7 chr1 7850294 7852099 - 5609147 +8 chr1 10000000 10005885 - 6664082 +9 chr1 10000000 10005885 - 7758853 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 2 | 4787 | a | 0 | ... | +| chr1 | 4326966 | 4330831 | a | 0 | ... | +| chr1 | 1 | 7417 | a | 0 | ... | +| chr1 | 1 | 7417 | a | 0 | ... | +| ... | ... | ... | ... | ... | ... | +| chr1 | 7850294 | 7852099 | a | 0 | ... | +| chr1 | 7850294 | 7852099 | a | 0 | ... | +| chr1 | 10000000 | 10005885 | a | 0 | ... | +| chr1 | 10000000 | 10005885 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 10 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +2 chr1 1 7417 - 2233731 +3 chr1 1 7417 - 3328502 +0 chr1 2 4787 + 2686232 +1 chr1 4326966 4330831 + 1635948 +4 chr1 5489432 5494152 - 2153514 +5 chr1 5489432 5494152 - 3248285 +6 chr1 7850294 7852099 - 4514376 +7 chr1 7850294 7852099 - 5609147 +8 chr1 10000000 10005885 - 6664082 +9 chr1 10000000 10005885 - 7758853 +df2 + Chromosome Start End Strand Distance +0 chr1 1 7417 - 2233731 +1 chr1 1 7417 - 3328502 +2 chr1 2 4787 + 2686232 +3 chr1 4326966 4330831 + 1635948 +4 chr1 5489432 5494152 - 2153514 +5 chr1 5489432 5494152 - 3248285 +6 chr1 7850294 7852099 - 4514376 +7 chr1 7850294 7852099 - 5609147 +8 chr1 10000000 10005885 - 6664082 +9 chr1 10000000 10005885 - 7758853 +Actual + Chromosome Start End Strand Distance +0 chr1 1 7417 - 2233731 +1 chr1 1 7417 - 3328502 +2 chr1 2 4787 + 2686232 +3 chr1 4326966 4330831 + 1635948 +4 chr1 5489432 5494152 - 2153514 +5 chr1 5489432 5494152 - 3248285 +6 chr1 7850294 7852099 - 4514376 +7 chr1 7850294 7852099 - 5609147 +8 chr1 10000000 10005885 - 6664082 +9 chr1 10000000 10005885 - 7758853 + +Expected + Chromosome Start End Strand Distance +0 chr1 1 7417 - 2233731 +1 chr1 1 7417 - 3328502 +2 chr1 2 4787 + 2686232 +3 chr1 4326966 4330831 + 1635948 +4 chr1 5489432 5494152 - 2153514 +5 chr1 5489432 5494152 - 3248285 +6 chr1 7850294 7852099 - 4514376 +7 chr1 7850294 7852099 - 5609147 +8 chr1 10000000 10005885 - 6664082 +9 chr1 10000000 10005885 - 7758853 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=10, step=1) +Expected index +RangeIndex(start=0, stop=10, step=1) +index equal [ True True True True True True True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmphxt93qob/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmphxt93qob/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +1 chr1 2 4787 + 1 +2 chr1 2 4787 + 2686232 +3 chr1 4326966 4330831 + 1635948 +4 chr1 4326966 4330831 + 4326965 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 2 | 4787 | a | 0 | ... | +| chr1 | 2 | 4787 | a | 0 | ... | +| chr1 | 4326966 | 4330831 | a | 0 | ... | +| chr1 | 4326966 | 4330831 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 4 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 2 4787 + 1 +1 chr1 2 4787 + 2686232 +2 chr1 4326966 4330831 + 1635948 +3 chr1 4326966 4330831 + 4326965 +df2 + Chromosome Start End Strand Distance +1 chr1 2 4787 + 1 +2 chr1 2 4787 + 2686232 +3 chr1 4326966 4330831 + 1635948 +4 chr1 4326966 4330831 + 4326965 +Actual + Chromosome Start End Strand Distance +0 chr1 2 4787 + 1 +1 chr1 2 4787 + 2686232 +2 chr1 4326966 4330831 + 1635948 +3 chr1 4326966 4330831 + 4326965 + +Expected + Chromosome Start End Strand Distance +0 chr1 2 4787 + 1 +1 chr1 2 4787 + 2686232 +2 chr1 4326966 4330831 + 1635948 +3 chr1 4326966 4330831 + 4326965 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=4, step=1) +Expected index +RangeIndex(start=0, stop=4, step=1) +index equal [ True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpqts7dzpd/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpqts7dzpd/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +1 chr1 2 4787 + 1 +2 chr1 2 4787 + 2686232 +3 chr1 4326966 4330831 + 1635948 +4 chr1 4326966 4330831 + 4326965 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 2 | 4787 | a | 0 | ... | +| chr1 | 2 | 4787 | a | 0 | ... | +| chr1 | 4326966 | 4330831 | a | 0 | ... | +| chr1 | 4326966 | 4330831 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 4 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 2 4787 + 1 +1 chr1 2 4787 + 2686232 +2 chr1 4326966 4330831 + 1635948 +3 chr1 4326966 4330831 + 4326965 +df2 + Chromosome Start End Strand Distance +1 chr1 2 4787 + 1 +2 chr1 2 4787 + 2686232 +3 chr1 4326966 4330831 + 1635948 +4 chr1 4326966 4330831 + 4326965 +Actual + Chromosome Start End Strand Distance +0 chr1 2 4787 + 1 +1 chr1 2 4787 + 2686232 +2 chr1 4326966 4330831 + 1635948 +3 chr1 4326966 4330831 + 4326965 + +Expected + Chromosome Start End Strand Distance +0 chr1 2 4787 + 1 +1 chr1 2 4787 + 2686232 +2 chr1 4326966 4330831 + 1635948 +3 chr1 4326966 4330831 + 4326965 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=4, step=1) +Expected index +RangeIndex(start=0, stop=4, step=1) +index equal [ True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp1_a4ggdp/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp1_a4ggdp/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +1 chr1 2 4787 + 1 +2 chr1 2 4787 + 2686232 +3 chr1 4326966 4330831 + 1635948 +4 chr1 4326966 4330831 + 4326965 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 2 | 4787 | a | 0 | ... | +| chr1 | 2 | 4787 | a | 0 | ... | +| chr1 | 4326966 | 4330831 | a | 0 | ... | +| chr1 | 4326966 | 4330831 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 4 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 2 4787 + 1 +1 chr1 2 4787 + 2686232 +2 chr1 4326966 4330831 + 1635948 +3 chr1 4326966 4330831 + 4326965 +df2 + Chromosome Start End Strand Distance +1 chr1 2 4787 + 1 +2 chr1 2 4787 + 2686232 +3 chr1 4326966 4330831 + 1635948 +4 chr1 4326966 4330831 + 4326965 +Actual + Chromosome Start End Strand Distance +0 chr1 2 4787 + 1 +1 chr1 2 4787 + 2686232 +2 chr1 4326966 4330831 + 1635948 +3 chr1 4326966 4330831 + 4326965 + +Expected + Chromosome Start End Strand Distance +0 chr1 2 4787 + 1 +1 chr1 2 4787 + 2686232 +2 chr1 4326966 4330831 + 1635948 +3 chr1 4326966 4330831 + 4326965 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=4, step=1) +Expected index +RangeIndex(start=0, stop=4, step=1) +index equal [ True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmptgqgtv0e/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmptgqgtv0e/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +1 chr1 2 4787 + 1 +2 chr1 2 4787 + 2686232 +3 chr1 4326966 4330831 + 1635948 +4 chr1 4326966 4330831 + 4326965 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 2 | 4787 | a | 0 | ... | +| chr1 | 2 | 4787 | a | 0 | ... | +| chr1 | 4326966 | 4330831 | a | 0 | ... | +| chr1 | 4326966 | 4330831 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 4 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 2 4787 + 1 +1 chr1 2 4787 + 2686232 +2 chr1 4326966 4330831 + 1635948 +3 chr1 4326966 4330831 + 4326965 +df2 + Chromosome Start End Strand Distance +1 chr1 2 4787 + 1 +2 chr1 2 4787 + 2686232 +3 chr1 4326966 4330831 + 1635948 +4 chr1 4326966 4330831 + 4326965 +Actual + Chromosome Start End Strand Distance +0 chr1 2 4787 + 1 +1 chr1 2 4787 + 2686232 +2 chr1 4326966 4330831 + 1635948 +3 chr1 4326966 4330831 + 4326965 + +Expected + Chromosome Start End Strand Distance +0 chr1 2 4787 + 1 +1 chr1 2 4787 + 2686232 +2 chr1 4326966 4330831 + 1635948 +3 chr1 4326966 4330831 + 4326965 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=4, step=1) +Expected index +RangeIndex(start=0, stop=4, step=1) +index equal [ True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmppivttpii/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmppivttpii/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +2 chr1 4326966 4330831 + 4324661 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 4326966 | 4330831 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 4326966 4330831 + 4324661 +df2 + Chromosome Start End Strand Distance +2 chr1 4326966 4330831 + 4324661 +Actual + Chromosome Start End Strand Distance +0 chr1 4326966 4330831 + 4324661 + +Expected + Chromosome Start End Strand Distance +0 chr1 4326966 4330831 + 4324661 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=1, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +index equal [ True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpwnbtaacr/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpwnbtaacr/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 9999999 10002637 + 2614751 +1 chr1 9999999 10002637 + 4643552 +2 chr1 10000000 10004657 - 8870225 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 9999999 | 10002637 | a | 0 | ... | +| chr1 | 9999999 | 10002637 | a | 0 | ... | +| chr1 | 10000000 | 10004657 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 3 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 9999999 10002637 + 2614751 +1 chr1 9999999 10002637 + 4643552 +2 chr1 10000000 10004657 - 8870225 +df2 + Chromosome Start End Strand Distance +0 chr1 9999999 10002637 + 2614751 +1 chr1 9999999 10002637 + 4643552 +2 chr1 10000000 10004657 - 8870225 +Actual + Chromosome Start End Strand Distance +0 chr1 9999999 10002637 + 2614751 +1 chr1 9999999 10002637 + 4643552 +2 chr1 10000000 10004657 - 8870225 + +Expected + Chromosome Start End Strand Distance +0 chr1 9999999 10002637 + 2614751 +1 chr1 9999999 10002637 + 4643552 +2 chr1 10000000 10004657 - 8870225 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=3, step=1) +Expected index +RangeIndex(start=0, stop=3, step=1) +index equal [ True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpnoq9pi_j/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpnoq9pi_j/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 9999999 10002637 + 2614751 +1 chr1 9999999 10002637 + 4643552 +2 chr1 10000000 10004657 - 8870225 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 9999999 | 10002637 | a | 0 | ... | +| chr1 | 9999999 | 10002637 | a | 0 | ... | +| chr1 | 10000000 | 10004657 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 3 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 9999999 10002637 + 2614751 +1 chr1 9999999 10002637 + 4643552 +2 chr1 10000000 10004657 - 8870225 +df2 + Chromosome Start End Strand Distance +0 chr1 9999999 10002637 + 2614751 +1 chr1 9999999 10002637 + 4643552 +2 chr1 10000000 10004657 - 8870225 +Actual + Chromosome Start End Strand Distance +0 chr1 9999999 10002637 + 2614751 +1 chr1 9999999 10002637 + 4643552 +2 chr1 10000000 10004657 - 8870225 + +Expected + Chromosome Start End Strand Distance +0 chr1 9999999 10002637 + 2614751 +1 chr1 9999999 10002637 + 4643552 +2 chr1 10000000 10004657 - 8870225 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=3, step=1) +Expected index +RangeIndex(start=0, stop=3, step=1) +index equal [ True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpgawldt5r/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpgawldt5r/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 9999999 10002637 + 2614751 +1 chr1 9999999 10002637 + 4641305 +2 chr1 10000000 10004657 - 8870225 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 9999999 | 10002637 | a | 0 | ... | +| chr1 | 9999999 | 10002637 | a | 0 | ... | +| chr1 | 10000000 | 10004657 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 3 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 9999999 10002637 + 2614751 +1 chr1 9999999 10002637 + 4641305 +2 chr1 10000000 10004657 - 8870225 +df2 + Chromosome Start End Strand Distance +0 chr1 9999999 10002637 + 2614751 +1 chr1 9999999 10002637 + 4641305 +2 chr1 10000000 10004657 - 8870225 +Actual + Chromosome Start End Strand Distance +0 chr1 9999999 10002637 + 2614751 +1 chr1 9999999 10002637 + 4641305 +2 chr1 10000000 10004657 - 8870225 + +Expected + Chromosome Start End Strand Distance +0 chr1 9999999 10002637 + 2614751 +1 chr1 9999999 10002637 + 4641305 +2 chr1 10000000 10004657 - 8870225 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=3, step=1) +Expected index +RangeIndex(start=0, stop=3, step=1) +index equal [ True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpuyr9b0tr/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpuyr9b0tr/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 9999999 10002637 + 2614751 +1 chr1 9999999 10002637 + 4641305 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 9999999 | 10002637 | a | 0 | ... | +| chr1 | 9999999 | 10002637 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 9999999 10002637 + 2614751 +1 chr1 9999999 10002637 + 4641305 +df2 + Chromosome Start End Strand Distance +0 chr1 9999999 10002637 + 2614751 +1 chr1 9999999 10002637 + 4641305 +Actual + Chromosome Start End Strand Distance +0 chr1 9999999 10002637 + 2614751 +1 chr1 9999999 10002637 + 4641305 + +Expected + Chromosome Start End Strand Distance +0 chr1 9999999 10002637 + 2614751 +1 chr1 9999999 10002637 + 4641305 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=2, step=1) +Expected index +RangeIndex(start=0, stop=2, step=1) +index equal [ True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmprlh2pryb/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmprlh2pryb/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpdi8lr6uz/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpdi8lr6uz/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmppdrhw3jt/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmppdrhw3jt/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpwrrecmbz/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpwrrecmbz/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpjb1pxwyn/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpjb1pxwyn/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +1 chr12 712870 717759 - 6149128 +2 chr12 712870 717759 - 6983140 +3 chr12 1915133 1920022 - 4946865 +4 chr12 1915133 1920022 - 5780877 +5 chr12 4445042 4449931 - 2416956 +6 chr12 4445042 4449931 - 3250968 +7 chr12 5931290 5936179 - 930708 +8 chr12 5931290 5936179 - 1764720 +9 chr12 6866886 6871775 + 930708 +10 chr12 6866886 6871775 + 2210242 +11 chr12 7700898 7705787 + 1376230 +12 chr12 7700898 7705787 + 1764720 +13 chr12 8053316 8058205 + 1023812 +14 chr12 8053316 8058205 + 1470419 +15 chr12 9082016 9086905 - 1023812 +16 chr12 9082016 9086905 - 1376230 +17 chr12 9528623 9533512 - 1470419 +18 chr12 9528623 9533512 - 1822837 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr12 | 8053316 | 8058205 | a | 0 | ... | +| chr12 | 8053316 | 8058205 | a | 0 | ... | +| chr12 | 7700898 | 7705787 | a | 0 | ... | +| chr12 | 7700898 | 7705787 | a | 0 | ... | +| ... | ... | ... | ... | ... | ... | +| chr12 | 1915133 | 1920022 | a | 0 | ... | +| chr12 | 1915133 | 1920022 | a | 0 | ... | +| chr12 | 9082016 | 9086905 | a | 0 | ... | +| chr12 | 9082016 | 9086905 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 18 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +8 chr12 712870 717759 - 6149128 +9 chr12 712870 717759 - 6983140 +14 chr12 1915133 1920022 - 4946865 +15 chr12 1915133 1920022 - 5780877 +10 chr12 4445042 4449931 - 2416956 +11 chr12 4445042 4449931 - 3250968 +12 chr12 5931290 5936179 - 930708 +13 chr12 5931290 5936179 - 1764720 +4 chr12 6866886 6871775 + 930708 +5 chr12 6866886 6871775 + 2210242 +2 chr12 7700898 7705787 + 1376230 +3 chr12 7700898 7705787 + 1764720 +0 chr12 8053316 8058205 + 1023812 +1 chr12 8053316 8058205 + 1470419 +16 chr12 9082016 9086905 - 1023812 +17 chr12 9082016 9086905 - 1376230 +6 chr12 9528623 9533512 - 1470419 +7 chr12 9528623 9533512 - 1822837 +df2 + Chromosome Start End Strand Distance +1 chr12 712870 717759 - 6149128 +2 chr12 712870 717759 - 6983140 +3 chr12 1915133 1920022 - 4946865 +4 chr12 1915133 1920022 - 5780877 +5 chr12 4445042 4449931 - 2416956 +6 chr12 4445042 4449931 - 3250968 +7 chr12 5931290 5936179 - 930708 +8 chr12 5931290 5936179 - 1764720 +9 chr12 6866886 6871775 + 930708 +10 chr12 6866886 6871775 + 2210242 +11 chr12 7700898 7705787 + 1376230 +12 chr12 7700898 7705787 + 1764720 +13 chr12 8053316 8058205 + 1023812 +14 chr12 8053316 8058205 + 1470419 +15 chr12 9082016 9086905 - 1023812 +16 chr12 9082016 9086905 - 1376230 +17 chr12 9528623 9533512 - 1470419 +18 chr12 9528623 9533512 - 1822837 +Actual + Chromosome Start End Strand Distance +0 chr12 712870 717759 - 6149128 +1 chr12 712870 717759 - 6983140 +2 chr12 1915133 1920022 - 4946865 +3 chr12 1915133 1920022 - 5780877 +4 chr12 4445042 4449931 - 2416956 +5 chr12 4445042 4449931 - 3250968 +6 chr12 5931290 5936179 - 930708 +7 chr12 5931290 5936179 - 1764720 +8 chr12 6866886 6871775 + 930708 +9 chr12 6866886 6871775 + 2210242 +10 chr12 7700898 7705787 + 1376230 +11 chr12 7700898 7705787 + 1764720 +12 chr12 8053316 8058205 + 1023812 +13 chr12 8053316 8058205 + 1470419 +14 chr12 9082016 9086905 - 1023812 +15 chr12 9082016 9086905 - 1376230 +16 chr12 9528623 9533512 - 1470419 +17 chr12 9528623 9533512 - 1822837 + +Expected + Chromosome Start End Strand Distance +0 chr12 712870 717759 - 6149128 +1 chr12 712870 717759 - 6983140 +2 chr12 1915133 1920022 - 4946865 +3 chr12 1915133 1920022 - 5780877 +4 chr12 4445042 4449931 - 2416956 +5 chr12 4445042 4449931 - 3250968 +6 chr12 5931290 5936179 - 930708 +7 chr12 5931290 5936179 - 1764720 +8 chr12 6866886 6871775 + 930708 +9 chr12 6866886 6871775 + 2210242 +10 chr12 7700898 7705787 + 1376230 +11 chr12 7700898 7705787 + 1764720 +12 chr12 8053316 8058205 + 1023812 +13 chr12 8053316 8058205 + 1470419 +14 chr12 9082016 9086905 - 1023812 +15 chr12 9082016 9086905 - 1376230 +16 chr12 9528623 9533512 - 1470419 +17 chr12 9528623 9533512 - 1822837 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=18, step=1) +Expected index +RangeIndex(start=0, stop=18, step=1) +index equal [ True True True True True True True True True True True True + True True True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmprm5lxc9t/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmprm5lxc9t/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 7940750 7945639 + 7940749 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 7940750 | 7945639 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 7940750 7945639 + 7940749 +df2 + Chromosome Start End Strand Distance +0 chr1 7940750 7945639 + 7940749 +Actual + Chromosome Start End Strand Distance +0 chr1 7940750 7945639 + 7940749 + +Expected + Chromosome Start End Strand Distance +0 chr1 7940750 7945639 + 7940749 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=1, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +index equal [ True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp1k8bqmy4/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp1k8bqmy4/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 7940750 7945639 + 7940749 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 7940750 | 7945639 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 7940750 7945639 + 7940749 +df2 + Chromosome Start End Strand Distance +0 chr1 7940750 7945639 + 7940749 +Actual + Chromosome Start End Strand Distance +0 chr1 7940750 7945639 + 7940749 + +Expected + Chromosome Start End Strand Distance +0 chr1 7940750 7945639 + 7940749 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=1, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +index equal [ True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpz2hny7_i/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpz2hny7_i/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpiqzm6pw6/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpiqzm6pw6/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp5qhlrpep/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp5qhlrpep/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpq0o_pu5r/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpq0o_pu5r/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 1107288 1114252 - 1896705 +1 chr1 1107288 1114252 - 7088999 +2 chr1 5713280 5719084 + 1685008 +3 chr1 5713280 5719084 + 2700366 +4 chr1 6344001 6345761 - 1857490 +5 chr1 6344001 6345761 - 3331087 +6 chr1 6344001 6349792 + 1054300 +7 chr1 6344001 6349792 + 3331087 +8 chr1 6344001 6351844 + 1052248 +9 chr1 6344001 6351844 + 3331087 +10 chr1 6344001 6353192 - 1850059 +11 chr1 6344001 6353192 - 3331087 +12 chr1 7925755 7928038 + 519706 +13 chr1 7925755 7928038 + 4912841 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 5713280 | 5719084 | a | 0 | ... | +| chr1 | 5713280 | 5719084 | a | 0 | ... | +| chr1 | 6344001 | 6349792 | a | 0 | ... | +| chr1 | 6344001 | 6349792 | a | 0 | ... | +| ... | ... | ... | ... | ... | ... | +| chr1 | 1107288 | 1114252 | a | 0 | ... | +| chr1 | 1107288 | 1114252 | a | 0 | ... | +| chr1 | 6344001 | 6345761 | a | 0 | ... | +| chr1 | 6344001 | 6345761 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 14 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +10 chr1 1107288 1114252 - 1896705 +11 chr1 1107288 1114252 - 7088999 +0 chr1 5713280 5719084 + 1685008 +1 chr1 5713280 5719084 + 2700366 +12 chr1 6344001 6345761 - 1857490 +13 chr1 6344001 6345761 - 3331087 +2 chr1 6344001 6349792 + 1054300 +3 chr1 6344001 6349792 + 3331087 +4 chr1 6344001 6351844 + 1052248 +5 chr1 6344001 6351844 + 3331087 +8 chr1 6344001 6353192 - 1850059 +9 chr1 6344001 6353192 - 3331087 +6 chr1 7925755 7928038 + 519706 +7 chr1 7925755 7928038 + 4912841 +df2 + Chromosome Start End Strand Distance +0 chr1 1107288 1114252 - 1896705 +1 chr1 1107288 1114252 - 7088999 +2 chr1 5713280 5719084 + 1685008 +3 chr1 5713280 5719084 + 2700366 +4 chr1 6344001 6345761 - 1857490 +5 chr1 6344001 6345761 - 3331087 +6 chr1 6344001 6349792 + 1054300 +7 chr1 6344001 6349792 + 3331087 +8 chr1 6344001 6351844 + 1052248 +9 chr1 6344001 6351844 + 3331087 +10 chr1 6344001 6353192 - 1850059 +11 chr1 6344001 6353192 - 3331087 +12 chr1 7925755 7928038 + 519706 +13 chr1 7925755 7928038 + 4912841 +Actual + Chromosome Start End Strand Distance +0 chr1 1107288 1114252 - 1896705 +1 chr1 1107288 1114252 - 7088999 +2 chr1 5713280 5719084 + 1685008 +3 chr1 5713280 5719084 + 2700366 +4 chr1 6344001 6345761 - 1857490 +5 chr1 6344001 6345761 - 3331087 +6 chr1 6344001 6349792 + 1054300 +7 chr1 6344001 6349792 + 3331087 +8 chr1 6344001 6351844 + 1052248 +9 chr1 6344001 6351844 + 3331087 +10 chr1 6344001 6353192 - 1850059 +11 chr1 6344001 6353192 - 3331087 +12 chr1 7925755 7928038 + 519706 +13 chr1 7925755 7928038 + 4912841 + +Expected + Chromosome Start End Strand Distance +0 chr1 1107288 1114252 - 1896705 +1 chr1 1107288 1114252 - 7088999 +2 chr1 5713280 5719084 + 1685008 +3 chr1 5713280 5719084 + 2700366 +4 chr1 6344001 6345761 - 1857490 +5 chr1 6344001 6345761 - 3331087 +6 chr1 6344001 6349792 + 1054300 +7 chr1 6344001 6349792 + 3331087 +8 chr1 6344001 6351844 + 1052248 +9 chr1 6344001 6351844 + 3331087 +10 chr1 6344001 6353192 - 1850059 +11 chr1 6344001 6353192 - 3331087 +12 chr1 7925755 7928038 + 519706 +13 chr1 7925755 7928038 + 4912841 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=14, step=1) +Expected index +RangeIndex(start=0, stop=14, step=1) +index equal [ True True True True True True True True True True True True + True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpql0ejo67/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpql0ejo67/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 1107288 1114252 - 1100993 +1 chr1 1107288 1114252 - 1107287 +2 chr1 5713280 5719084 + 5713271 +3 chr1 6344001 6345761 - 6337706 +4 chr1 6344001 6345761 - 6344000 +5 chr1 6344001 6349792 + 6343992 +6 chr1 6344001 6351844 + 6343992 +7 chr1 6344001 6353192 - 6337706 +8 chr1 6344001 6353192 - 6344000 +9 chr1 7925755 7928038 + 7925746 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 5713280 | 5719084 | a | 0 | ... | +| chr1 | 6344001 | 6349792 | a | 0 | ... | +| chr1 | 6344001 | 6351844 | a | 0 | ... | +| chr1 | 7925755 | 7928038 | a | 0 | ... | +| ... | ... | ... | ... | ... | ... | +| chr1 | 1107288 | 1114252 | a | 0 | ... | +| chr1 | 1107288 | 1114252 | a | 0 | ... | +| chr1 | 6344001 | 6345761 | a | 0 | ... | +| chr1 | 6344001 | 6345761 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 10 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +6 chr1 1107288 1114252 - 1100993 +7 chr1 1107288 1114252 - 1107287 +0 chr1 5713280 5719084 + 5713271 +8 chr1 6344001 6345761 - 6337706 +9 chr1 6344001 6345761 - 6344000 +1 chr1 6344001 6349792 + 6343992 +2 chr1 6344001 6351844 + 6343992 +4 chr1 6344001 6353192 - 6337706 +5 chr1 6344001 6353192 - 6344000 +3 chr1 7925755 7928038 + 7925746 +df2 + Chromosome Start End Strand Distance +0 chr1 1107288 1114252 - 1100993 +1 chr1 1107288 1114252 - 1107287 +2 chr1 5713280 5719084 + 5713271 +3 chr1 6344001 6345761 - 6337706 +4 chr1 6344001 6345761 - 6344000 +5 chr1 6344001 6349792 + 6343992 +6 chr1 6344001 6351844 + 6343992 +7 chr1 6344001 6353192 - 6337706 +8 chr1 6344001 6353192 - 6344000 +9 chr1 7925755 7928038 + 7925746 +Actual + Chromosome Start End Strand Distance +0 chr1 1107288 1114252 - 1100993 +1 chr1 1107288 1114252 - 1107287 +2 chr1 5713280 5719084 + 5713271 +3 chr1 6344001 6345761 - 6337706 +4 chr1 6344001 6345761 - 6344000 +5 chr1 6344001 6349792 + 6343992 +6 chr1 6344001 6351844 + 6343992 +7 chr1 6344001 6353192 - 6337706 +8 chr1 6344001 6353192 - 6344000 +9 chr1 7925755 7928038 + 7925746 + +Expected + Chromosome Start End Strand Distance +0 chr1 1107288 1114252 - 1100993 +1 chr1 1107288 1114252 - 1107287 +2 chr1 5713280 5719084 + 5713271 +3 chr1 6344001 6345761 - 6337706 +4 chr1 6344001 6345761 - 6344000 +5 chr1 6344001 6349792 + 6343992 +6 chr1 6344001 6351844 + 6343992 +7 chr1 6344001 6353192 - 6337706 +8 chr1 6344001 6353192 - 6344000 +9 chr1 7925755 7928038 + 7925746 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=10, step=1) +Expected index +RangeIndex(start=0, stop=10, step=1) +index equal [ True True True True True True True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpny5s3dy7/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpny5s3dy7/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 1 2 - 6 +1 chr1 1 2 - 6 +2 chr1 1 2 - 6 +3 chr1 1 2 - 6 +4 chr1 1107288 1107289 - 1107281 +5 chr1 5713280 5713281 + 5713279 +6 chr1 7925755 7925756 - 7925748 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 5713280 | 5713281 | a | 0 | ... | +| chr1 | 1 | 2 | a | 0 | ... | +| chr1 | 1 | 2 | a | 0 | ... | +| chr1 | 1 | 2 | a | 0 | ... | +| chr1 | 1107288 | 1107289 | a | 0 | ... | +| chr1 | 7925755 | 7925756 | a | 0 | ... | +| chr1 | 1 | 2 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 7 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +1 chr1 1 2 - 6 +2 chr1 1 2 - 6 +3 chr1 1 2 - 6 +6 chr1 1 2 - 6 +4 chr1 1107288 1107289 - 1107281 +0 chr1 5713280 5713281 + 5713279 +5 chr1 7925755 7925756 - 7925748 +df2 + Chromosome Start End Strand Distance +0 chr1 1 2 - 6 +1 chr1 1 2 - 6 +2 chr1 1 2 - 6 +3 chr1 1 2 - 6 +4 chr1 1107288 1107289 - 1107281 +5 chr1 5713280 5713281 + 5713279 +6 chr1 7925755 7925756 - 7925748 +Actual + Chromosome Start End Strand Distance +0 chr1 1 2 - 6 +1 chr1 1 2 - 6 +2 chr1 1 2 - 6 +3 chr1 1 2 - 6 +4 chr1 1107288 1107289 - 1107281 +5 chr1 5713280 5713281 + 5713279 +6 chr1 7925755 7925756 - 7925748 + +Expected + Chromosome Start End Strand Distance +0 chr1 1 2 - 6 +1 chr1 1 2 - 6 +2 chr1 1 2 - 6 +3 chr1 1 2 - 6 +4 chr1 1107288 1107289 - 1107281 +5 chr1 5713280 5713281 + 5713279 +6 chr1 7925755 7925756 - 7925748 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=7, step=1) +Expected index +RangeIndex(start=0, stop=7, step=1) +index equal [ True True True True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp1f4kbh2g/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp1f4kbh2g/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 1 2 - 6 +1 chr1 1 2 - 6 +2 chr1 1 2 - 6 +3 chr1 1 2 - 6 +4 chr1 1107288 1107289 - 1107281 +5 chr1 5713280 5713281 + 5713279 +6 chr1 7925755 7925756 - 7925748 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 5713280 | 5713281 | a | 0 | ... | +| chr1 | 1 | 2 | a | 0 | ... | +| chr1 | 1 | 2 | a | 0 | ... | +| chr1 | 1 | 2 | a | 0 | ... | +| chr1 | 1107288 | 1107289 | a | 0 | ... | +| chr1 | 7925755 | 7925756 | a | 0 | ... | +| chr1 | 1 | 2 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 7 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +1 chr1 1 2 - 6 +2 chr1 1 2 - 6 +3 chr1 1 2 - 6 +6 chr1 1 2 - 6 +4 chr1 1107288 1107289 - 1107281 +0 chr1 5713280 5713281 + 5713279 +5 chr1 7925755 7925756 - 7925748 +df2 + Chromosome Start End Strand Distance +0 chr1 1 2 - 6 +1 chr1 1 2 - 6 +2 chr1 1 2 - 6 +3 chr1 1 2 - 6 +4 chr1 1107288 1107289 - 1107281 +5 chr1 5713280 5713281 + 5713279 +6 chr1 7925755 7925756 - 7925748 +Actual + Chromosome Start End Strand Distance +0 chr1 1 2 - 6 +1 chr1 1 2 - 6 +2 chr1 1 2 - 6 +3 chr1 1 2 - 6 +4 chr1 1107288 1107289 - 1107281 +5 chr1 5713280 5713281 + 5713279 +6 chr1 7925755 7925756 - 7925748 + +Expected + Chromosome Start End Strand Distance +0 chr1 1 2 - 6 +1 chr1 1 2 - 6 +2 chr1 1 2 - 6 +3 chr1 1 2 - 6 +4 chr1 1107288 1107289 - 1107281 +5 chr1 5713280 5713281 + 5713279 +6 chr1 7925755 7925756 - 7925748 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=7, step=1) +Expected index +RangeIndex(start=0, stop=7, step=1) +index equal [ True True True True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpmz8spjex/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpmz8spjex/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +5 chr1 5713280 5713281 + 5713273 +6 chr1 5713280 5713281 + 5713279 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 5713280 | 5713281 | a | 0 | ... | +| chr1 | 5713280 | 5713281 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 5713280 5713281 + 5713273 +1 chr1 5713280 5713281 + 5713279 +df2 + Chromosome Start End Strand Distance +5 chr1 5713280 5713281 + 5713273 +6 chr1 5713280 5713281 + 5713279 +Actual + Chromosome Start End Strand Distance +0 chr1 5713280 5713281 + 5713273 +1 chr1 5713280 5713281 + 5713279 + +Expected + Chromosome Start End Strand Distance +0 chr1 5713280 5713281 + 5713273 +1 chr1 5713280 5713281 + 5713279 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=2, step=1) +Expected index +RangeIndex(start=0, stop=2, step=1) +index equal [ True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp3h08bkkz/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp3h08bkkz/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +5 chr1 5713280 5713281 + 5515825 +6 chr1 5713280 5713281 + 5515831 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 5713280 | 5713281 | a | 0 | ... | +| chr1 | 5713280 | 5713281 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 5713280 5713281 + 5515825 +1 chr1 5713280 5713281 + 5515831 +df2 + Chromosome Start End Strand Distance +5 chr1 5713280 5713281 + 5515825 +6 chr1 5713280 5713281 + 5515831 +Actual + Chromosome Start End Strand Distance +0 chr1 5713280 5713281 + 5515825 +1 chr1 5713280 5713281 + 5515831 + +Expected + Chromosome Start End Strand Distance +0 chr1 5713280 5713281 + 5515825 +1 chr1 5713280 5713281 + 5515831 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=2, step=1) +Expected index +RangeIndex(start=0, stop=2, step=1) +index equal [ True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmprd80aa9l/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmprd80aa9l/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpy8pv098e/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpy8pv098e/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 1429820 1434488 - 4777116 +1 chr1 1429820 1434488 - 5392794 +2 chr1 5032365 5040672 - 1170932 +3 chr1 5032365 5040672 - 1786610 +4 chr1 6096519 6102341 - 109263 +5 chr1 6096519 6102341 - 724941 +6 chr1 7905785 7910050 + 752003 +7 chr1 7905785 7910050 + 6693863 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 7905785 | 7910050 | a | 0 | ... | +| chr1 | 7905785 | 7910050 | a | 0 | ... | +| chr1 | 6096519 | 6102341 | a | 0 | ... | +| chr1 | 6096519 | 6102341 | a | 0 | ... | +| chr1 | 1429820 | 1434488 | a | 0 | ... | +| chr1 | 1429820 | 1434488 | a | 0 | ... | +| chr1 | 5032365 | 5040672 | a | 0 | ... | +| chr1 | 5032365 | 5040672 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 8 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +4 chr1 1429820 1434488 - 4777116 +5 chr1 1429820 1434488 - 5392794 +6 chr1 5032365 5040672 - 1170932 +7 chr1 5032365 5040672 - 1786610 +2 chr1 6096519 6102341 - 109263 +3 chr1 6096519 6102341 - 724941 +0 chr1 7905785 7910050 + 752003 +1 chr1 7905785 7910050 + 6693863 +df2 + Chromosome Start End Strand Distance +0 chr1 1429820 1434488 - 4777116 +1 chr1 1429820 1434488 - 5392794 +2 chr1 5032365 5040672 - 1170932 +3 chr1 5032365 5040672 - 1786610 +4 chr1 6096519 6102341 - 109263 +5 chr1 6096519 6102341 - 724941 +6 chr1 7905785 7910050 + 752003 +7 chr1 7905785 7910050 + 6693863 +Actual + Chromosome Start End Strand Distance +0 chr1 1429820 1434488 - 4777116 +1 chr1 1429820 1434488 - 5392794 +2 chr1 5032365 5040672 - 1170932 +3 chr1 5032365 5040672 - 1786610 +4 chr1 6096519 6102341 - 109263 +5 chr1 6096519 6102341 - 724941 +6 chr1 7905785 7910050 + 752003 +7 chr1 7905785 7910050 + 6693863 + +Expected + Chromosome Start End Strand Distance +0 chr1 1429820 1434488 - 4777116 +1 chr1 1429820 1434488 - 5392794 +2 chr1 5032365 5040672 - 1170932 +3 chr1 5032365 5040672 - 1786610 +4 chr1 6096519 6102341 - 109263 +5 chr1 6096519 6102341 - 724941 +6 chr1 7905785 7910050 + 752003 +7 chr1 7905785 7910050 + 6693863 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=8, step=1) +Expected index +RangeIndex(start=0, stop=8, step=1) +index equal [ True True True True True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpl7f_t24v/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpl7f_t24v/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 4265 8530 + 1193904 +1 chr1 4265 8530 + 7140476 +2 chr1 4668 9336 - 6202268 +3 chr1 4668 9336 - 6817946 +4 chr1 5822 11644 - 6199960 +5 chr1 5822 11644 - 6815638 +6 chr1 8307 16614 - 6194990 +7 chr1 8307 16614 - 6810668 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 4265 | 8530 | a | 0 | ... | +| chr1 | 4265 | 8530 | a | 0 | ... | +| chr1 | 5822 | 11644 | a | 0 | ... | +| chr1 | 5822 | 11644 | a | 0 | ... | +| chr1 | 4668 | 9336 | a | 0 | ... | +| chr1 | 4668 | 9336 | a | 0 | ... | +| chr1 | 8307 | 16614 | a | 0 | ... | +| chr1 | 8307 | 16614 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 8 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 4265 8530 + 1193904 +1 chr1 4265 8530 + 7140476 +4 chr1 4668 9336 - 6202268 +5 chr1 4668 9336 - 6817946 +2 chr1 5822 11644 - 6199960 +3 chr1 5822 11644 - 6815638 +6 chr1 8307 16614 - 6194990 +7 chr1 8307 16614 - 6810668 +df2 + Chromosome Start End Strand Distance +0 chr1 4265 8530 + 1193904 +1 chr1 4265 8530 + 7140476 +2 chr1 4668 9336 - 6202268 +3 chr1 4668 9336 - 6817946 +4 chr1 5822 11644 - 6199960 +5 chr1 5822 11644 - 6815638 +6 chr1 8307 16614 - 6194990 +7 chr1 8307 16614 - 6810668 +Actual + Chromosome Start End Strand Distance +0 chr1 4265 8530 + 1193904 +1 chr1 4265 8530 + 7140476 +2 chr1 4668 9336 - 6202268 +3 chr1 4668 9336 - 6817946 +4 chr1 5822 11644 - 6199960 +5 chr1 5822 11644 - 6815638 +6 chr1 8307 16614 - 6194990 +7 chr1 8307 16614 - 6810668 + +Expected + Chromosome Start End Strand Distance +0 chr1 4265 8530 + 1193904 +1 chr1 4265 8530 + 7140476 +2 chr1 4668 9336 - 6202268 +3 chr1 4668 9336 - 6817946 +4 chr1 5822 11644 - 6199960 +5 chr1 5822 11644 - 6815638 +6 chr1 8307 16614 - 6194990 +7 chr1 8307 16614 - 6810668 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=8, step=1) +Expected index +RangeIndex(start=0, stop=8, step=1) +index equal [ True True True True True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpq63_0f9i/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpq63_0f9i/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 4265 8530 + 1193904 +1 chr1 4265 8530 + 7140476 +2 chr1 4668 9336 - 6202268 +3 chr1 4668 9336 - 6817946 +4 chr1 5822 11644 - 6199960 +5 chr1 5822 11644 - 6815638 +6 chr1 8307 16614 - 6194990 +7 chr1 8307 16614 - 6810668 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 4265 | 8530 | a | 0 | ... | +| chr1 | 4265 | 8530 | a | 0 | ... | +| chr1 | 5822 | 11644 | a | 0 | ... | +| chr1 | 5822 | 11644 | a | 0 | ... | +| chr1 | 4668 | 9336 | a | 0 | ... | +| chr1 | 4668 | 9336 | a | 0 | ... | +| chr1 | 8307 | 16614 | a | 0 | ... | +| chr1 | 8307 | 16614 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 8 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 4265 8530 + 1193904 +1 chr1 4265 8530 + 7140476 +4 chr1 4668 9336 - 6202268 +5 chr1 4668 9336 - 6817946 +2 chr1 5822 11644 - 6199960 +3 chr1 5822 11644 - 6815638 +6 chr1 8307 16614 - 6194990 +7 chr1 8307 16614 - 6810668 +df2 + Chromosome Start End Strand Distance +0 chr1 4265 8530 + 1193904 +1 chr1 4265 8530 + 7140476 +2 chr1 4668 9336 - 6202268 +3 chr1 4668 9336 - 6817946 +4 chr1 5822 11644 - 6199960 +5 chr1 5822 11644 - 6815638 +6 chr1 8307 16614 - 6194990 +7 chr1 8307 16614 - 6810668 +Actual + Chromosome Start End Strand Distance +0 chr1 4265 8530 + 1193904 +1 chr1 4265 8530 + 7140476 +2 chr1 4668 9336 - 6202268 +3 chr1 4668 9336 - 6817946 +4 chr1 5822 11644 - 6199960 +5 chr1 5822 11644 - 6815638 +6 chr1 8307 16614 - 6194990 +7 chr1 8307 16614 - 6810668 + +Expected + Chromosome Start End Strand Distance +0 chr1 4265 8530 + 1193904 +1 chr1 4265 8530 + 7140476 +2 chr1 4668 9336 - 6202268 +3 chr1 4668 9336 - 6817946 +4 chr1 5822 11644 - 6199960 +5 chr1 5822 11644 - 6815638 +6 chr1 8307 16614 - 6194990 +7 chr1 8307 16614 - 6810668 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=8, step=1) +Expected index +RangeIndex(start=0, stop=8, step=1) +index equal [ True True True True True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpk0bkz1p2/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpk0bkz1p2/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 4265 8530 - 6203074 +1 chr1 4265 8530 - 6818752 +2 chr1 4668 9336 - 6202268 +3 chr1 4668 9336 - 6817946 +4 chr1 5822 11644 - 6199960 +5 chr1 5822 11644 - 6815638 +6 chr1 8307 16614 + 1185820 +7 chr1 8307 16614 + 7132392 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 8307 | 16614 | a | 0 | ... | +| chr1 | 8307 | 16614 | a | 0 | ... | +| chr1 | 4265 | 8530 | a | 0 | ... | +| chr1 | 4265 | 8530 | a | 0 | ... | +| chr1 | 5822 | 11644 | a | 0 | ... | +| chr1 | 5822 | 11644 | a | 0 | ... | +| chr1 | 4668 | 9336 | a | 0 | ... | +| chr1 | 4668 | 9336 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 8 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +2 chr1 4265 8530 - 6203074 +3 chr1 4265 8530 - 6818752 +6 chr1 4668 9336 - 6202268 +7 chr1 4668 9336 - 6817946 +4 chr1 5822 11644 - 6199960 +5 chr1 5822 11644 - 6815638 +0 chr1 8307 16614 + 1185820 +1 chr1 8307 16614 + 7132392 +df2 + Chromosome Start End Strand Distance +0 chr1 4265 8530 - 6203074 +1 chr1 4265 8530 - 6818752 +2 chr1 4668 9336 - 6202268 +3 chr1 4668 9336 - 6817946 +4 chr1 5822 11644 - 6199960 +5 chr1 5822 11644 - 6815638 +6 chr1 8307 16614 + 1185820 +7 chr1 8307 16614 + 7132392 +Actual + Chromosome Start End Strand Distance +0 chr1 4265 8530 - 6203074 +1 chr1 4265 8530 - 6818752 +2 chr1 4668 9336 - 6202268 +3 chr1 4668 9336 - 6817946 +4 chr1 5822 11644 - 6199960 +5 chr1 5822 11644 - 6815638 +6 chr1 8307 16614 + 1185820 +7 chr1 8307 16614 + 7132392 + +Expected + Chromosome Start End Strand Distance +0 chr1 4265 8530 - 6203074 +1 chr1 4265 8530 - 6818752 +2 chr1 4668 9336 - 6202268 +3 chr1 4668 9336 - 6817946 +4 chr1 5822 11644 - 6199960 +5 chr1 5822 11644 - 6815638 +6 chr1 8307 16614 + 1185820 +7 chr1 8307 16614 + 7132392 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=8, step=1) +Expected index +RangeIndex(start=0, stop=8, step=1) +index equal [ True True True True True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp0rcvd0an/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp0rcvd0an/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 1202433 1211923 - 4999681 +1 chr1 1202433 1211923 - 5615359 +2 chr1 6211603 6216794 + 932212 +3 chr1 6211603 6216794 + 4999681 +4 chr1 6827281 6836771 + 312235 +5 chr1 6827281 6836771 + 5615359 +6 chr1 7149005 7153783 - 312235 +7 chr1 7149005 7153783 - 932212 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 6211603 | 6216794 | a | 0 | ... | +| chr1 | 6211603 | 6216794 | a | 0 | ... | +| chr1 | 6827281 | 6836771 | a | 0 | ... | +| chr1 | 6827281 | 6836771 | a | 0 | ... | +| chr1 | 7149005 | 7153783 | a | 0 | ... | +| chr1 | 7149005 | 7153783 | a | 0 | ... | +| chr1 | 1202433 | 1211923 | a | 0 | ... | +| chr1 | 1202433 | 1211923 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 8 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +6 chr1 1202433 1211923 - 4999681 +7 chr1 1202433 1211923 - 5615359 +0 chr1 6211603 6216794 + 932212 +1 chr1 6211603 6216794 + 4999681 +2 chr1 6827281 6836771 + 312235 +3 chr1 6827281 6836771 + 5615359 +4 chr1 7149005 7153783 - 312235 +5 chr1 7149005 7153783 - 932212 +df2 + Chromosome Start End Strand Distance +0 chr1 1202433 1211923 - 4999681 +1 chr1 1202433 1211923 - 5615359 +2 chr1 6211603 6216794 + 932212 +3 chr1 6211603 6216794 + 4999681 +4 chr1 6827281 6836771 + 312235 +5 chr1 6827281 6836771 + 5615359 +6 chr1 7149005 7153783 - 312235 +7 chr1 7149005 7153783 - 932212 +Actual + Chromosome Start End Strand Distance +0 chr1 1202433 1211923 - 4999681 +1 chr1 1202433 1211923 - 5615359 +2 chr1 6211603 6216794 + 932212 +3 chr1 6211603 6216794 + 4999681 +4 chr1 6827281 6836771 + 312235 +5 chr1 6827281 6836771 + 5615359 +6 chr1 7149005 7153783 - 312235 +7 chr1 7149005 7153783 - 932212 + +Expected + Chromosome Start End Strand Distance +0 chr1 1202433 1211923 - 4999681 +1 chr1 1202433 1211923 - 5615359 +2 chr1 6211603 6216794 + 932212 +3 chr1 6211603 6216794 + 4999681 +4 chr1 6827281 6836771 + 312235 +5 chr1 6827281 6836771 + 5615359 +6 chr1 7149005 7153783 - 312235 +7 chr1 7149005 7153783 - 932212 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=8, step=1) +Expected index +RangeIndex(start=0, stop=8, step=1) +index equal [ True True True True True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmptvp9nx_k/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmptvp9nx_k/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 1202433 1211923 - 4999681 +1 chr1 1202433 1211923 - 5615359 +2 chr1 6211603 6216794 + 932212 +3 chr1 6211603 6216794 + 5004473 +4 chr1 6827281 6836771 + 312235 +5 chr1 6827281 6836771 + 5620151 +6 chr1 7149005 7153783 - 317628 +7 chr1 7149005 7153783 - 929522 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 6211603 | 6216794 | a | 0 | ... | +| chr1 | 6211603 | 6216794 | a | 0 | ... | +| chr1 | 6827281 | 6836771 | a | 0 | ... | +| chr1 | 6827281 | 6836771 | a | 0 | ... | +| chr1 | 7149005 | 7153783 | a | 0 | ... | +| chr1 | 7149005 | 7153783 | a | 0 | ... | +| chr1 | 1202433 | 1211923 | a | 0 | ... | +| chr1 | 1202433 | 1211923 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 8 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +6 chr1 1202433 1211923 - 4999681 +7 chr1 1202433 1211923 - 5615359 +0 chr1 6211603 6216794 + 932212 +1 chr1 6211603 6216794 + 5004473 +2 chr1 6827281 6836771 + 312235 +3 chr1 6827281 6836771 + 5620151 +4 chr1 7149005 7153783 - 317628 +5 chr1 7149005 7153783 - 929522 +df2 + Chromosome Start End Strand Distance +0 chr1 1202433 1211923 - 4999681 +1 chr1 1202433 1211923 - 5615359 +2 chr1 6211603 6216794 + 932212 +3 chr1 6211603 6216794 + 5004473 +4 chr1 6827281 6836771 + 312235 +5 chr1 6827281 6836771 + 5620151 +6 chr1 7149005 7153783 - 317628 +7 chr1 7149005 7153783 - 929522 +Actual + Chromosome Start End Strand Distance +0 chr1 1202433 1211923 - 4999681 +1 chr1 1202433 1211923 - 5615359 +2 chr1 6211603 6216794 + 932212 +3 chr1 6211603 6216794 + 5004473 +4 chr1 6827281 6836771 + 312235 +5 chr1 6827281 6836771 + 5620151 +6 chr1 7149005 7153783 - 317628 +7 chr1 7149005 7153783 - 929522 + +Expected + Chromosome Start End Strand Distance +0 chr1 1202433 1211923 - 4999681 +1 chr1 1202433 1211923 - 5615359 +2 chr1 6211603 6216794 + 932212 +3 chr1 6211603 6216794 + 5004473 +4 chr1 6827281 6836771 + 312235 +5 chr1 6827281 6836771 + 5620151 +6 chr1 7149005 7153783 - 317628 +7 chr1 7149005 7153783 - 929522 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=8, step=1) +Expected index +RangeIndex(start=0, stop=8, step=1) +index equal [ True True True True True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpgxto7tsx/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpgxto7tsx/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 5191 13072 + 5190 +1 chr1 5191 8264 + 5190 +2 chr1 5191 9288 + 5190 +3 chr1 5191 9889 + 5190 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 5191 | 13072 | a | 0 | ... | +| chr1 | 5191 | 8264 | a | 0 | ... | +| chr1 | 5191 | 9889 | a | 0 | ... | +| chr1 | 5191 | 9288 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 4 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +1 chr1 5191 8264 + 5190 +3 chr1 5191 9288 + 5190 +2 chr1 5191 9889 + 5190 +0 chr1 5191 13072 + 5190 +df2 + Chromosome Start End Strand Distance +1 chr1 5191 8264 + 5190 +2 chr1 5191 9288 + 5190 +3 chr1 5191 9889 + 5190 +0 chr1 5191 13072 + 5190 +Actual + Chromosome Start End Strand Distance +0 chr1 5191 8264 + 5190 +1 chr1 5191 9288 + 5190 +2 chr1 5191 9889 + 5190 +3 chr1 5191 13072 + 5190 + +Expected + Chromosome Start End Strand Distance +0 chr1 5191 8264 + 5190 +1 chr1 5191 9288 + 5190 +2 chr1 5191 9889 + 5190 +3 chr1 5191 13072 + 5190 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=4, step=1) +Expected index +RangeIndex(start=0, stop=4, step=1) +index equal [ True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmppn7d0443/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmppn7d0443/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 3442294 3442937 + 1139378 +1 chr1 3442294 3450753 - 3248715 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 3442294 | 3442937 | a | 0 | ... | +| chr1 | 3442294 | 3450753 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 3442294 3442937 + 1139378 +1 chr1 3442294 3450753 - 3248715 +df2 + Chromosome Start End Strand Distance +0 chr1 3442294 3442937 + 1139378 +1 chr1 3442294 3450753 - 3248715 +Actual + Chromosome Start End Strand Distance +0 chr1 3442294 3442937 + 1139378 +1 chr1 3442294 3450753 - 3248715 + +Expected + Chromosome Start End Strand Distance +0 chr1 3442294 3442937 + 1139378 +1 chr1 3442294 3450753 - 3248715 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=2, step=1) +Expected index +RangeIndex(start=0, stop=2, step=1) +index equal [ True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp7lf_w6nw/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp7lf_w6nw/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 4582314 4592314 - 2107154 +1 chr1 6699467 6702418 + 2107154 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 6699467 | 6702418 | a | 0 | ... | +| chr1 | 4582314 | 4592314 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +1 chr1 4582314 4592314 - 2107154 +0 chr1 6699467 6702418 + 2107154 +df2 + Chromosome Start End Strand Distance +0 chr1 4582314 4592314 - 2107154 +1 chr1 6699467 6702418 + 2107154 +Actual + Chromosome Start End Strand Distance +0 chr1 4582314 4592314 - 2107154 +1 chr1 6699467 6702418 + 2107154 + +Expected + Chromosome Start End Strand Distance +0 chr1 4582314 4592314 - 2107154 +1 chr1 6699467 6702418 + 2107154 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=2, step=1) +Expected index +RangeIndex(start=0, stop=2, step=1) +index equal [ True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpo5_0925i/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpo5_0925i/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 4582314 4592314 - 2107154 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 4582314 | 4592314 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 4582314 4592314 - 2107154 +df2 + Chromosome Start End Strand Distance +0 chr1 4582314 4592314 - 2107154 +Actual + Chromosome Start End Strand Distance +0 chr1 4582314 4592314 - 2107154 + +Expected + Chromosome Start End Strand Distance +0 chr1 4582314 4592314 - 2107154 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=1, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +index equal [ True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpozmjbigl/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpozmjbigl/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 4582314 4592314 - 2107154 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 4582314 | 4592314 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 4582314 4592314 - 2107154 +df2 + Chromosome Start End Strand Distance +0 chr1 4582314 4592314 - 2107154 +Actual + Chromosome Start End Strand Distance +0 chr1 4582314 4592314 - 2107154 + +Expected + Chromosome Start End Strand Distance +0 chr1 4582314 4592314 - 2107154 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=1, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +index equal [ True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpq6qmpjow/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpq6qmpjow/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 4582314 4592314 - 2107154 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 4582314 | 4592314 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 4582314 4592314 - 2107154 +df2 + Chromosome Start End Strand Distance +0 chr1 4582314 4592314 - 2107154 +Actual + Chromosome Start End Strand Distance +0 chr1 4582314 4592314 - 2107154 + +Expected + Chromosome Start End Strand Distance +0 chr1 4582314 4592314 - 2107154 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=1, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +index equal [ True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmplayh85vu/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmplayh85vu/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 1209884 1212192 - 3370123 +1 chr1 1209884 1212192 - 5487276 +2 chr1 4582314 4592314 - 2107154 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 1209884 | 1212192 | a | 0 | ... | +| chr1 | 1209884 | 1212192 | a | 0 | ... | +| chr1 | 4582314 | 4592314 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 3 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 1209884 1212192 - 3370123 +1 chr1 1209884 1212192 - 5487276 +2 chr1 4582314 4592314 - 2107154 +df2 + Chromosome Start End Strand Distance +0 chr1 1209884 1212192 - 3370123 +1 chr1 1209884 1212192 - 5487276 +2 chr1 4582314 4592314 - 2107154 +Actual + Chromosome Start End Strand Distance +0 chr1 1209884 1212192 - 3370123 +1 chr1 1209884 1212192 - 5487276 +2 chr1 4582314 4592314 - 2107154 + +Expected + Chromosome Start End Strand Distance +0 chr1 1209884 1212192 - 3370123 +1 chr1 1209884 1212192 - 5487276 +2 chr1 4582314 4592314 - 2107154 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=3, step=1) +Expected index +RangeIndex(start=0, stop=3, step=1) +index equal [ True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpv7k6w912/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpv7k6w912/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp46ghw4ms/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp46ghw4ms/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 3223021 3232408 + 358393 +1 chr1 3223021 3232408 + 2471210 +4 chr1 5734586 5738967 + 2143408 +5 chr1 5734586 5738967 + 4982775 +8 chr1 7335056 7342232 + 3743878 +9 chr1 7335056 7342232 + 6583245 +10 chr1 7853618 7862006 + 4262440 +11 chr1 7853618 7862006 + 7101807 +12 chr1 8913922 8922134 + 5322744 +13 chr1 8913922 8922134 + 8162111 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 7853618 | 7862006 | a | 0 | ... | +| chr1 | 7853618 | 7862006 | a | 0 | ... | +| chr1 | 5734586 | 5738967 | a | 0 | ... | +| chr1 | 5734586 | 5738967 | a | 0 | ... | +| ... | ... | ... | ... | ... | ... | +| chr1 | 8913922 | 8922134 | a | 0 | ... | +| chr1 | 8913922 | 8922134 | a | 0 | ... | +| chr1 | 7335056 | 7342232 | a | 0 | ... | +| chr1 | 7335056 | 7342232 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 10 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +4 chr1 3223021 3232408 + 358393 +5 chr1 3223021 3232408 + 2471210 +2 chr1 5734586 5738967 + 2143408 +3 chr1 5734586 5738967 + 4982775 +8 chr1 7335056 7342232 + 3743878 +9 chr1 7335056 7342232 + 6583245 +0 chr1 7853618 7862006 + 4262440 +1 chr1 7853618 7862006 + 7101807 +6 chr1 8913922 8922134 + 5322744 +7 chr1 8913922 8922134 + 8162111 +df2 + Chromosome Start End Strand Distance +0 chr1 3223021 3232408 + 358393 +1 chr1 3223021 3232408 + 2471210 +4 chr1 5734586 5738967 + 2143408 +5 chr1 5734586 5738967 + 4982775 +8 chr1 7335056 7342232 + 3743878 +9 chr1 7335056 7342232 + 6583245 +10 chr1 7853618 7862006 + 4262440 +11 chr1 7853618 7862006 + 7101807 +12 chr1 8913922 8922134 + 5322744 +13 chr1 8913922 8922134 + 8162111 +Actual + Chromosome Start End Strand Distance +0 chr1 3223021 3232408 + 358393 +1 chr1 3223021 3232408 + 2471210 +2 chr1 5734586 5738967 + 2143408 +3 chr1 5734586 5738967 + 4982775 +4 chr1 7335056 7342232 + 3743878 +5 chr1 7335056 7342232 + 6583245 +6 chr1 7853618 7862006 + 4262440 +7 chr1 7853618 7862006 + 7101807 +8 chr1 8913922 8922134 + 5322744 +9 chr1 8913922 8922134 + 8162111 + +Expected + Chromosome Start End Strand Distance +0 chr1 3223021 3232408 + 358393 +1 chr1 3223021 3232408 + 2471210 +2 chr1 5734586 5738967 + 2143408 +3 chr1 5734586 5738967 + 4982775 +4 chr1 7335056 7342232 + 3743878 +5 chr1 7335056 7342232 + 6583245 +6 chr1 7853618 7862006 + 4262440 +7 chr1 7853618 7862006 + 7101807 +8 chr1 8913922 8922134 + 5322744 +9 chr1 8913922 8922134 + 8162111 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=10, step=1) +Expected index +RangeIndex(start=0, stop=10, step=1) +index equal [ True True True True True True True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpwruzkkgc/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpwruzkkgc/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 3223021 3232408 + 358393 +1 chr1 3223021 3232408 + 2471210 +4 chr1 5734586 5738967 + 2143408 +5 chr1 5734586 5738967 + 4982775 +8 chr1 7335056 7342232 + 3743878 +9 chr1 7335056 7342232 + 6583245 +10 chr1 7853618 7862006 + 4262440 +11 chr1 7853618 7862006 + 7101807 +12 chr1 8913922 8922134 + 5322744 +13 chr1 8913922 8922134 + 8162111 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 7853618 | 7862006 | a | 0 | ... | +| chr1 | 7853618 | 7862006 | a | 0 | ... | +| chr1 | 5734586 | 5738967 | a | 0 | ... | +| chr1 | 5734586 | 5738967 | a | 0 | ... | +| ... | ... | ... | ... | ... | ... | +| chr1 | 8913922 | 8922134 | a | 0 | ... | +| chr1 | 8913922 | 8922134 | a | 0 | ... | +| chr1 | 7335056 | 7342232 | a | 0 | ... | +| chr1 | 7335056 | 7342232 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 10 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +4 chr1 3223021 3232408 + 358393 +5 chr1 3223021 3232408 + 2471210 +2 chr1 5734586 5738967 + 2143408 +3 chr1 5734586 5738967 + 4982775 +8 chr1 7335056 7342232 + 3743878 +9 chr1 7335056 7342232 + 6583245 +0 chr1 7853618 7862006 + 4262440 +1 chr1 7853618 7862006 + 7101807 +6 chr1 8913922 8922134 + 5322744 +7 chr1 8913922 8922134 + 8162111 +df2 + Chromosome Start End Strand Distance +0 chr1 3223021 3232408 + 358393 +1 chr1 3223021 3232408 + 2471210 +4 chr1 5734586 5738967 + 2143408 +5 chr1 5734586 5738967 + 4982775 +8 chr1 7335056 7342232 + 3743878 +9 chr1 7335056 7342232 + 6583245 +10 chr1 7853618 7862006 + 4262440 +11 chr1 7853618 7862006 + 7101807 +12 chr1 8913922 8922134 + 5322744 +13 chr1 8913922 8922134 + 8162111 +Actual + Chromosome Start End Strand Distance +0 chr1 3223021 3232408 + 358393 +1 chr1 3223021 3232408 + 2471210 +2 chr1 5734586 5738967 + 2143408 +3 chr1 5734586 5738967 + 4982775 +4 chr1 7335056 7342232 + 3743878 +5 chr1 7335056 7342232 + 6583245 +6 chr1 7853618 7862006 + 4262440 +7 chr1 7853618 7862006 + 7101807 +8 chr1 8913922 8922134 + 5322744 +9 chr1 8913922 8922134 + 8162111 + +Expected + Chromosome Start End Strand Distance +0 chr1 3223021 3232408 + 358393 +1 chr1 3223021 3232408 + 2471210 +2 chr1 5734586 5738967 + 2143408 +3 chr1 5734586 5738967 + 4982775 +4 chr1 7335056 7342232 + 3743878 +5 chr1 7335056 7342232 + 6583245 +6 chr1 7853618 7862006 + 4262440 +7 chr1 7853618 7862006 + 7101807 +8 chr1 8913922 8922134 + 5322744 +9 chr1 8913922 8922134 + 8162111 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=10, step=1) +Expected index +RangeIndex(start=0, stop=10, step=1) +index equal [ True True True True True True True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpak0ojpro/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpak0ojpro/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 3223021 3232408 + 358393 +1 chr1 3223021 3232408 + 1675593 +4 chr1 5734586 5738967 + 819859 +5 chr1 5734586 5738967 + 2143408 +8 chr1 7335056 7342232 + 2420329 +9 chr1 7335056 7342232 + 3743878 +10 chr1 7853618 7862006 + 2938891 +11 chr1 7853618 7862006 + 4262440 +12 chr1 8913922 8922134 + 3999195 +13 chr1 8913922 8922134 + 5322744 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 7853618 | 7862006 | a | 0 | ... | +| chr1 | 7853618 | 7862006 | a | 0 | ... | +| chr1 | 5734586 | 5738967 | a | 0 | ... | +| chr1 | 5734586 | 5738967 | a | 0 | ... | +| ... | ... | ... | ... | ... | ... | +| chr1 | 8913922 | 8922134 | a | 0 | ... | +| chr1 | 8913922 | 8922134 | a | 0 | ... | +| chr1 | 7335056 | 7342232 | a | 0 | ... | +| chr1 | 7335056 | 7342232 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 10 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +4 chr1 3223021 3232408 + 358393 +5 chr1 3223021 3232408 + 1675593 +2 chr1 5734586 5738967 + 819859 +3 chr1 5734586 5738967 + 2143408 +8 chr1 7335056 7342232 + 2420329 +9 chr1 7335056 7342232 + 3743878 +0 chr1 7853618 7862006 + 2938891 +1 chr1 7853618 7862006 + 4262440 +6 chr1 8913922 8922134 + 3999195 +7 chr1 8913922 8922134 + 5322744 +df2 + Chromosome Start End Strand Distance +0 chr1 3223021 3232408 + 358393 +1 chr1 3223021 3232408 + 1675593 +4 chr1 5734586 5738967 + 819859 +5 chr1 5734586 5738967 + 2143408 +8 chr1 7335056 7342232 + 2420329 +9 chr1 7335056 7342232 + 3743878 +10 chr1 7853618 7862006 + 2938891 +11 chr1 7853618 7862006 + 4262440 +12 chr1 8913922 8922134 + 3999195 +13 chr1 8913922 8922134 + 5322744 +Actual + Chromosome Start End Strand Distance +0 chr1 3223021 3232408 + 358393 +1 chr1 3223021 3232408 + 1675593 +2 chr1 5734586 5738967 + 819859 +3 chr1 5734586 5738967 + 2143408 +4 chr1 7335056 7342232 + 2420329 +5 chr1 7335056 7342232 + 3743878 +6 chr1 7853618 7862006 + 2938891 +7 chr1 7853618 7862006 + 4262440 +8 chr1 8913922 8922134 + 3999195 +9 chr1 8913922 8922134 + 5322744 + +Expected + Chromosome Start End Strand Distance +0 chr1 3223021 3232408 + 358393 +1 chr1 3223021 3232408 + 1675593 +2 chr1 5734586 5738967 + 819859 +3 chr1 5734586 5738967 + 2143408 +4 chr1 7335056 7342232 + 2420329 +5 chr1 7335056 7342232 + 3743878 +6 chr1 7853618 7862006 + 2938891 +7 chr1 7853618 7862006 + 4262440 +8 chr1 8913922 8922134 + 3999195 +9 chr1 8913922 8922134 + 5322744 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=10, step=1) +Expected index +RangeIndex(start=0, stop=10, step=1) +index equal [ True True True True True True True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpvsbf9skh/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpvsbf9skh/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 3223021 3232408 - 3223020 +4 chr1 6340296 6349952 - 6340295 +6 chr1 7335056 7342232 - 7335055 +8 chr1 8913922 8922134 - 8913921 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 6340296 | 6349952 | a | 0 | ... | +| chr1 | 3223021 | 3232408 | a | 0 | ... | +| chr1 | 8913922 | 8922134 | a | 0 | ... | +| chr1 | 7335056 | 7342232 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 4 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +1 chr1 3223021 3232408 - 3223020 +0 chr1 6340296 6349952 - 6340295 +3 chr1 7335056 7342232 - 7335055 +2 chr1 8913922 8922134 - 8913921 +df2 + Chromosome Start End Strand Distance +0 chr1 3223021 3232408 - 3223020 +4 chr1 6340296 6349952 - 6340295 +6 chr1 7335056 7342232 - 7335055 +8 chr1 8913922 8922134 - 8913921 +Actual + Chromosome Start End Strand Distance +0 chr1 3223021 3232408 - 3223020 +1 chr1 6340296 6349952 - 6340295 +2 chr1 7335056 7342232 - 7335055 +3 chr1 8913922 8922134 - 8913921 + +Expected + Chromosome Start End Strand Distance +0 chr1 3223021 3232408 - 3223020 +1 chr1 6340296 6349952 - 6340295 +2 chr1 7335056 7342232 - 7335055 +3 chr1 8913922 8922134 - 8913921 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=4, step=1) +Expected index +RangeIndex(start=0, stop=4, step=1) +index equal [ True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp4sandfmf/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp4sandfmf/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 3223021 3223022 - 3223020 +4 chr1 6340296 6349952 - 6340295 +6 chr1 7335056 7342232 - 7335055 +8 chr1 8913922 8922134 - 8913921 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 6340296 | 6349952 | a | 0 | ... | +| chr1 | 3223021 | 3223022 | a | 0 | ... | +| chr1 | 8913922 | 8922134 | a | 0 | ... | +| chr1 | 7335056 | 7342232 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 4 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +1 chr1 3223021 3223022 - 3223020 +0 chr1 6340296 6349952 - 6340295 +3 chr1 7335056 7342232 - 7335055 +2 chr1 8913922 8922134 - 8913921 +df2 + Chromosome Start End Strand Distance +0 chr1 3223021 3223022 - 3223020 +4 chr1 6340296 6349952 - 6340295 +6 chr1 7335056 7342232 - 7335055 +8 chr1 8913922 8922134 - 8913921 +Actual + Chromosome Start End Strand Distance +0 chr1 3223021 3223022 - 3223020 +1 chr1 6340296 6349952 - 6340295 +2 chr1 7335056 7342232 - 7335055 +3 chr1 8913922 8922134 - 8913921 + +Expected + Chromosome Start End Strand Distance +0 chr1 3223021 3223022 - 3223020 +1 chr1 6340296 6349952 - 6340295 +2 chr1 7335056 7342232 - 7335055 +3 chr1 8913922 8922134 - 8913921 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=4, step=1) +Expected index +RangeIndex(start=0, stop=4, step=1) +index equal [ True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpxyt53cgu/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpxyt53cgu/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 3223021 3223022 - 3223020 +4 chr1 6340296 6349952 - 6340295 +6 chr1 7335056 7342232 - 7335055 +8 chr1 8913922 8922134 - 8913921 +9 chr1 9007595 9013708 - 9007594 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 9007595 | 9013708 | a | 0 | ... | +| chr1 | 6340296 | 6349952 | a | 0 | ... | +| chr1 | 3223021 | 3223022 | a | 0 | ... | +| chr1 | 8913922 | 8922134 | a | 0 | ... | +| chr1 | 7335056 | 7342232 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 5 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +2 chr1 3223021 3223022 - 3223020 +1 chr1 6340296 6349952 - 6340295 +4 chr1 7335056 7342232 - 7335055 +3 chr1 8913922 8922134 - 8913921 +0 chr1 9007595 9013708 - 9007594 +df2 + Chromosome Start End Strand Distance +0 chr1 3223021 3223022 - 3223020 +4 chr1 6340296 6349952 - 6340295 +6 chr1 7335056 7342232 - 7335055 +8 chr1 8913922 8922134 - 8913921 +9 chr1 9007595 9013708 - 9007594 +Actual + Chromosome Start End Strand Distance +0 chr1 3223021 3223022 - 3223020 +1 chr1 6340296 6349952 - 6340295 +2 chr1 7335056 7342232 - 7335055 +3 chr1 8913922 8922134 - 8913921 +4 chr1 9007595 9013708 - 9007594 + +Expected + Chromosome Start End Strand Distance +0 chr1 3223021 3223022 - 3223020 +1 chr1 6340296 6349952 - 6340295 +2 chr1 7335056 7342232 - 7335055 +3 chr1 8913922 8922134 - 8913921 +4 chr1 9007595 9013708 - 9007594 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=5, step=1) +Expected index +RangeIndex(start=0, stop=5, step=1) +index equal [ True True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp58hcu972/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp58hcu972/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp2ugobs7r/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp2ugobs7r/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 240962 243361 - 240774 +1 chr1 2920746 2920747 + 268061 +2 chr1 2920746 2920747 + 497685 +3 chr1 6373868 6374586 - 6373680 +4 chr1 9029183 9029647 + 4318052 +5 chr1 9029183 9029647 + 5839930 +6 chr1 9693309 9696026 - 9693121 +7 chr1 9888176 9889045 - 9887988 +10 chr19 1 6285 - 8303728 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 2920746 | 2920747 | a | 0 | ... | +| chr1 | 2920746 | 2920747 | a | 0 | ... | +| chr1 | 9029183 | 9029647 | a | 0 | ... | +| chr1 | 9029183 | 9029647 | a | 0 | ... | +| ... | ... | ... | ... | ... | ... | +| chr1 | 9693309 | 9696026 | a | 0 | ... | +| chr1 | 240962 | 243361 | a | 0 | ... | +| chr1 | 6373868 | 6374586 | a | 0 | ... | +| chr1 | 9888176 | 9889045 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 9 rows and 12 columns from 2 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +8 chr19 1 6285 - 8303728 +5 chr1 240962 243361 - 240774 +0 chr1 2920746 2920747 + 268061 +1 chr1 2920746 2920747 + 497685 +6 chr1 6373868 6374586 - 6373680 +2 chr1 9029183 9029647 + 4318052 +3 chr1 9029183 9029647 + 5839930 +4 chr1 9693309 9696026 - 9693121 +7 chr1 9888176 9889045 - 9887988 +df2 + Chromosome Start End Strand Distance +10 chr19 1 6285 - 8303728 +0 chr1 240962 243361 - 240774 +1 chr1 2920746 2920747 + 268061 +2 chr1 2920746 2920747 + 497685 +3 chr1 6373868 6374586 - 6373680 +4 chr1 9029183 9029647 + 4318052 +5 chr1 9029183 9029647 + 5839930 +6 chr1 9693309 9696026 - 9693121 +7 chr1 9888176 9889045 - 9887988 +Actual + Chromosome Start End Strand Distance +0 chr1 240962 243361 - 240774 +1 chr1 2920746 2920747 + 268061 +2 chr1 2920746 2920747 + 497685 +3 chr1 6373868 6374586 - 6373680 +4 chr1 9029183 9029647 + 4318052 +5 chr1 9029183 9029647 + 5839930 +6 chr1 9693309 9696026 - 9693121 +7 chr1 9888176 9889045 - 9887988 +8 chr19 1 6285 - 8303728 + +Expected + Chromosome Start End Strand Distance +0 chr1 240962 243361 - 240774 +1 chr1 2920746 2920747 + 268061 +2 chr1 2920746 2920747 + 497685 +3 chr1 6373868 6374586 - 6373680 +4 chr1 9029183 9029647 + 4318052 +5 chr1 9029183 9029647 + 5839930 +6 chr1 9693309 9696026 - 9693121 +7 chr1 9888176 9889045 - 9887988 +8 chr19 1 6285 - 8303728 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=9, step=1) +Expected index +RangeIndex(start=0, stop=9, step=1) +index equal [ True True True True True True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpacwdqun2/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpacwdqun2/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 2 189 + 2334620 +1 chr1 2 189 + 2421883 +2 chr1 2334808 2337231 - 2334620 +3 chr1 2422071 2423062 - 2421883 +4 chr1 3188807 3189254 - 3188619 +5 chr1 4706869 4711132 - 4706681 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 2 | 189 | a | 0 | ... | +| chr1 | 2 | 189 | a | 0 | ... | +| chr1 | 2334808 | 2337231 | a | 0 | ... | +| chr1 | 3188807 | 3189254 | a | 0 | ... | +| chr1 | 4706869 | 4711132 | a | 0 | ... | +| chr1 | 2422071 | 2423062 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 6 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 2 189 + 2334620 +1 chr1 2 189 + 2421883 +2 chr1 2334808 2337231 - 2334620 +5 chr1 2422071 2423062 - 2421883 +3 chr1 3188807 3189254 - 3188619 +4 chr1 4706869 4711132 - 4706681 +df2 + Chromosome Start End Strand Distance +0 chr1 2 189 + 2334620 +1 chr1 2 189 + 2421883 +2 chr1 2334808 2337231 - 2334620 +3 chr1 2422071 2423062 - 2421883 +4 chr1 3188807 3189254 - 3188619 +5 chr1 4706869 4711132 - 4706681 +Actual + Chromosome Start End Strand Distance +0 chr1 2 189 + 2334620 +1 chr1 2 189 + 2421883 +2 chr1 2334808 2337231 - 2334620 +3 chr1 2422071 2423062 - 2421883 +4 chr1 3188807 3189254 - 3188619 +5 chr1 4706869 4711132 - 4706681 + +Expected + Chromosome Start End Strand Distance +0 chr1 2 189 + 2334620 +1 chr1 2 189 + 2421883 +2 chr1 2334808 2337231 - 2334620 +3 chr1 2422071 2423062 - 2421883 +4 chr1 3188807 3189254 - 3188619 +5 chr1 4706869 4711132 - 4706681 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=6, step=1) +Expected index +RangeIndex(start=0, stop=6, step=1) +index equal [ True True True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpxdn7zr6c/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpxdn7zr6c/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 2 189 + 2334620 +1 chr1 2 189 + 2421883 +2 chr1 2334808 2337231 - 2334805 +3 chr1 2422071 2423062 - 2422068 +4 chr1 3188807 3189254 - 3188804 +5 chr1 4706869 4711132 - 4706866 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 2 | 189 | a | 0 | ... | +| chr1 | 2 | 189 | a | 0 | ... | +| chr1 | 2334808 | 2337231 | a | 0 | ... | +| chr1 | 3188807 | 3189254 | a | 0 | ... | +| chr1 | 4706869 | 4711132 | a | 0 | ... | +| chr1 | 2422071 | 2423062 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 6 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 2 189 + 2334620 +1 chr1 2 189 + 2421883 +2 chr1 2334808 2337231 - 2334805 +5 chr1 2422071 2423062 - 2422068 +3 chr1 3188807 3189254 - 3188804 +4 chr1 4706869 4711132 - 4706866 +df2 + Chromosome Start End Strand Distance +0 chr1 2 189 + 2334620 +1 chr1 2 189 + 2421883 +2 chr1 2334808 2337231 - 2334805 +3 chr1 2422071 2423062 - 2422068 +4 chr1 3188807 3189254 - 3188804 +5 chr1 4706869 4711132 - 4706866 +Actual + Chromosome Start End Strand Distance +0 chr1 2 189 + 2334620 +1 chr1 2 189 + 2421883 +2 chr1 2334808 2337231 - 2334805 +3 chr1 2422071 2423062 - 2422068 +4 chr1 3188807 3189254 - 3188804 +5 chr1 4706869 4711132 - 4706866 + +Expected + Chromosome Start End Strand Distance +0 chr1 2 189 + 2334620 +1 chr1 2 189 + 2421883 +2 chr1 2334808 2337231 - 2334805 +3 chr1 2422071 2423062 - 2422068 +4 chr1 3188807 3189254 - 3188804 +5 chr1 4706869 4711132 - 4706866 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=6, step=1) +Expected index +RangeIndex(start=0, stop=6, step=1) +index equal [ True True True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmprspp223j/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmprspp223j/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +2 chr1 2334808 2334809 + 2334807 +3 chr1 3188807 3188808 + 3188806 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 2334808 | 2334809 | a | 0 | ... | +| chr1 | 3188807 | 3188808 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 2334808 2334809 + 2334807 +1 chr1 3188807 3188808 + 3188806 +df2 + Chromosome Start End Strand Distance +2 chr1 2334808 2334809 + 2334807 +3 chr1 3188807 3188808 + 3188806 +Actual + Chromosome Start End Strand Distance +0 chr1 2334808 2334809 + 2334807 +1 chr1 3188807 3188808 + 3188806 + +Expected + Chromosome Start End Strand Distance +0 chr1 2334808 2334809 + 2334807 +1 chr1 3188807 3188808 + 3188806 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=2, step=1) +Expected index +RangeIndex(start=0, stop=2, step=1) +index equal [ True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpxaqoam3g/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpxaqoam3g/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpgazqwojs/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpgazqwojs/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpsqc44c1t/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpsqc44c1t/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmppocgolf_/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmppocgolf_/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp5nxtqbxn/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp5nxtqbxn/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpdx8q9re0/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpdx8q9re0/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp2koeq0ke/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp2koeq0ke/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 74963 74964 + 74962 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 74963 | 74964 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 74963 74964 + 74962 +df2 + Chromosome Start End Strand Distance +0 chr1 74963 74964 + 74962 +Actual + Chromosome Start End Strand Distance +0 chr1 74963 74964 + 74962 + +Expected + Chromosome Start End Strand Distance +0 chr1 74963 74964 + 74962 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=1, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +index equal [ True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp7y53fwa3/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp7y53fwa3/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpmv18z56s/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpmv18z56s/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp9yifyxrb/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp9yifyxrb/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpfazm_si8/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpfazm_si8/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpcq3_lrh6/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpcq3_lrh6/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpjpbplogh/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpjpbplogh/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpvgkw0_8t/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpvgkw0_8t/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +1 chr22 3893998 3895314 - 1879989 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr22 | 3893998 | 3895314 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr22 3893998 3895314 - 1879989 +df2 + Chromosome Start End Strand Distance +1 chr22 3893998 3895314 - 1879989 +Actual + Chromosome Start End Strand Distance +0 chr22 3893998 3895314 - 1879989 + +Expected + Chromosome Start End Strand Distance +0 chr22 3893998 3895314 - 1879989 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=1, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +index equal [ True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpc8m6aw1p/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpc8m6aw1p/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpam1me017/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpam1me017/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +1 chr1 1648244 1650588 + 1154877 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 1648244 | 1650588 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 1648244 1650588 + 1154877 +df2 + Chromosome Start End Strand Distance +1 chr1 1648244 1650588 + 1154877 +Actual + Chromosome Start End Strand Distance +0 chr1 1648244 1650588 + 1154877 + +Expected + Chromosome Start End Strand Distance +0 chr1 1648244 1650588 + 1154877 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=1, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +index equal [ True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpestih47c/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpestih47c/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +8 chr2 2 3 - 1 +9 chr2 538811 538812 - 538810 +10 chr2 7490801 7490802 - 7490800 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr2 | 2 | 3 | a | 0 | ... | +| chr2 | 7490801 | 7490802 | a | 0 | ... | +| chr2 | 538811 | 538812 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 3 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr2 2 3 - 1 +2 chr2 538811 538812 - 538810 +1 chr2 7490801 7490802 - 7490800 +df2 + Chromosome Start End Strand Distance +8 chr2 2 3 - 1 +9 chr2 538811 538812 - 538810 +10 chr2 7490801 7490802 - 7490800 +Actual + Chromosome Start End Strand Distance +0 chr2 2 3 - 1 +1 chr2 538811 538812 - 538810 +2 chr2 7490801 7490802 - 7490800 + +Expected + Chromosome Start End Strand Distance +0 chr2 2 3 - 1 +1 chr2 538811 538812 - 538810 +2 chr2 7490801 7490802 - 7490800 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=3, step=1) +Expected index +RangeIndex(start=0, stop=3, step=1) +index equal [ True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp9auhi7e7/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp9auhi7e7/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +8 chr2 2 3 - 1 +9 chr2 538811 538812 - 538810 +10 chr2 7490801 7490802 - 7490800 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr2 | 2 | 3 | a | 0 | ... | +| chr2 | 7490801 | 7490802 | a | 0 | ... | +| chr2 | 538811 | 538812 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 3 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr2 2 3 - 1 +2 chr2 538811 538812 - 538810 +1 chr2 7490801 7490802 - 7490800 +df2 + Chromosome Start End Strand Distance +8 chr2 2 3 - 1 +9 chr2 538811 538812 - 538810 +10 chr2 7490801 7490802 - 7490800 +Actual + Chromosome Start End Strand Distance +0 chr2 2 3 - 1 +1 chr2 538811 538812 - 538810 +2 chr2 7490801 7490802 - 7490800 + +Expected + Chromosome Start End Strand Distance +0 chr2 2 3 - 1 +1 chr2 538811 538812 - 538810 +2 chr2 7490801 7490802 - 7490800 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=3, step=1) +Expected index +RangeIndex(start=0, stop=3, step=1) +index equal [ True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp1el6pz77/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp1el6pz77/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpeejhd462/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpeejhd462/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpm44tu2tr/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpm44tu2tr/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpvfn3_ict/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpvfn3_ict/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpvn1f6vct/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpvn1f6vct/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpvvhuwjnf/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpvvhuwjnf/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpof7coj_d/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpof7coj_d/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp3hp5zpvg/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp3hp5zpvg/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmphkm22ics/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmphkm22ics/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmplic7n3yg/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmplic7n3yg/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp1fwunaki/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp1fwunaki/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp6wblxnpq/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp6wblxnpq/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpsgvi82yh/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpsgvi82yh/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpi_g43tdr/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpi_g43tdr/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpnelqpr0k/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpnelqpr0k/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp2ntynl65/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp2ntynl65/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpl4ru00me/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpl4ru00me/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp5hw4_5dg/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp5hw4_5dg/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 970676 971478 + 7804839 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 970676 | 971478 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 970676 971478 + 7804839 +df2 + Chromosome Start End Strand Distance +0 chr1 970676 971478 + 7804839 +Actual + Chromosome Start End Strand Distance +0 chr1 970676 971478 + 7804839 + +Expected + Chromosome Start End Strand Distance +0 chr1 970676 971478 + 7804839 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=1, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +index equal [ True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp5ze1_bnn/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp5ze1_bnn/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 970676 971478 + 7804839 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 970676 | 971478 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 970676 971478 + 7804839 +df2 + Chromosome Start End Strand Distance +0 chr1 970676 971478 + 7804839 +Actual + Chromosome Start End Strand Distance +0 chr1 970676 971478 + 7804839 + +Expected + Chromosome Start End Strand Distance +0 chr1 970676 971478 + 7804839 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=1, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +index equal [ True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpv4khtuvv/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpv4khtuvv/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp4v54ep2r/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp4v54ep2r/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpsh2jpc4b/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpsh2jpc4b/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +2 chr19 1810251 1815117 - 1810250 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr19 | 1810251 | 1815117 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr19 1810251 1815117 - 1810250 +df2 + Chromosome Start End Strand Distance +2 chr19 1810251 1815117 - 1810250 +Actual + Chromosome Start End Strand Distance +0 chr19 1810251 1815117 - 1810250 + +Expected + Chromosome Start End Strand Distance +0 chr19 1810251 1815117 - 1810250 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=1, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +index equal [ True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp2hni6c34/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp2hni6c34/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +1 chr18 4534250 4540402 + 4534246 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr18 | 4534250 | 4540402 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr18 4534250 4540402 + 4534246 +df2 + Chromosome Start End Strand Distance +1 chr18 4534250 4540402 + 4534246 +Actual + Chromosome Start End Strand Distance +0 chr18 4534250 4540402 + 4534246 + +Expected + Chromosome Start End Strand Distance +0 chr18 4534250 4540402 + 4534246 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=1, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +index equal [ True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpnw5ogl9l/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpnw5ogl9l/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +2 chr19 1810251 1815117 - 1810250 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr19 | 1810251 | 1815117 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr19 1810251 1815117 - 1810250 +df2 + Chromosome Start End Strand Distance +2 chr19 1810251 1815117 - 1810250 +Actual + Chromosome Start End Strand Distance +0 chr19 1810251 1815117 - 1810250 + +Expected + Chromosome Start End Strand Distance +0 chr19 1810251 1815117 - 1810250 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=1, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +index equal [ True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpvn_z3b3s/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpvn_z3b3s/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpqxcfztki/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpqxcfztki/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpgxbv6peh/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpgxbv6peh/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpqfoot49t/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpqfoot49t/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpimh4vey1/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpimh4vey1/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp93a8jf96/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp93a8jf96/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp3230b2p6/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp3230b2p6/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpfkqo5xb8/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpfkqo5xb8/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 3141 8794 + 6106074 +1 chr1 3141 8794 + 9077627 +2 chr1 1201253 1202032 + 4912836 +3 chr1 1201253 1202032 + 7884389 +4 chr1 1201253 1203508 - 4285672 +5 chr1 1201253 1203508 - 4911360 +6 chr1 1201253 1203800 + 4911068 +7 chr1 1201253 1203800 + 7882621 +8 chr1 1201253 1203800 + 4911068 +9 chr1 1201253 1203800 + 7882621 +10 chr1 1201253 1205525 + 4909343 +11 chr1 1201253 1205525 + 7880896 +12 chr1 1201253 1206909 - 4282271 +13 chr1 1201253 1206909 - 4907959 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 1201253 | 1203800 | a | 0 | ... | +| chr1 | 1201253 | 1203800 | a | 0 | ... | +| chr1 | 1201253 | 1203800 | a | 0 | ... | +| chr1 | 1201253 | 1203800 | a | 0 | ... | +| ... | ... | ... | ... | ... | ... | +| chr1 | 1201253 | 1206909 | a | 0 | ... | +| chr1 | 1201253 | 1206909 | a | 0 | ... | +| chr1 | 1201253 | 1203508 | a | 0 | ... | +| chr1 | 1201253 | 1203508 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 14 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +4 chr1 3141 8794 + 6106074 +5 chr1 3141 8794 + 9077627 +6 chr1 1201253 1202032 + 4912836 +7 chr1 1201253 1202032 + 7884389 +12 chr1 1201253 1203508 - 4285672 +13 chr1 1201253 1203508 - 4911360 +0 chr1 1201253 1203800 + 4911068 +2 chr1 1201253 1203800 + 4911068 +1 chr1 1201253 1203800 + 7882621 +3 chr1 1201253 1203800 + 7882621 +8 chr1 1201253 1205525 + 4909343 +9 chr1 1201253 1205525 + 7880896 +10 chr1 1201253 1206909 - 4282271 +11 chr1 1201253 1206909 - 4907959 +df2 + Chromosome Start End Strand Distance +0 chr1 3141 8794 + 6106074 +1 chr1 3141 8794 + 9077627 +2 chr1 1201253 1202032 + 4912836 +3 chr1 1201253 1202032 + 7884389 +4 chr1 1201253 1203508 - 4285672 +5 chr1 1201253 1203508 - 4911360 +6 chr1 1201253 1203800 + 4911068 +8 chr1 1201253 1203800 + 4911068 +7 chr1 1201253 1203800 + 7882621 +9 chr1 1201253 1203800 + 7882621 +10 chr1 1201253 1205525 + 4909343 +11 chr1 1201253 1205525 + 7880896 +12 chr1 1201253 1206909 - 4282271 +13 chr1 1201253 1206909 - 4907959 +Actual + Chromosome Start End Strand Distance +0 chr1 3141 8794 + 6106074 +1 chr1 3141 8794 + 9077627 +2 chr1 1201253 1202032 + 4912836 +3 chr1 1201253 1202032 + 7884389 +4 chr1 1201253 1203508 - 4285672 +5 chr1 1201253 1203508 - 4911360 +6 chr1 1201253 1203800 + 4911068 +7 chr1 1201253 1203800 + 4911068 +8 chr1 1201253 1203800 + 7882621 +9 chr1 1201253 1203800 + 7882621 +10 chr1 1201253 1205525 + 4909343 +11 chr1 1201253 1205525 + 7880896 +12 chr1 1201253 1206909 - 4282271 +13 chr1 1201253 1206909 - 4907959 + +Expected + Chromosome Start End Strand Distance +0 chr1 3141 8794 + 6106074 +1 chr1 3141 8794 + 9077627 +2 chr1 1201253 1202032 + 4912836 +3 chr1 1201253 1202032 + 7884389 +4 chr1 1201253 1203508 - 4285672 +5 chr1 1201253 1203508 - 4911360 +6 chr1 1201253 1203800 + 4911068 +7 chr1 1201253 1203800 + 4911068 +8 chr1 1201253 1203800 + 7882621 +9 chr1 1201253 1203800 + 7882621 +10 chr1 1201253 1205525 + 4909343 +11 chr1 1201253 1205525 + 7880896 +12 chr1 1201253 1206909 - 4282271 +13 chr1 1201253 1206909 - 4907959 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=14, step=1) +Expected index +RangeIndex(start=0, stop=14, step=1) +index equal [ True True True True True True True True True True True True + True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpj0j2h87z/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpj0j2h87z/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +2 chr1 1201253 1203508 - 4285672 +3 chr1 1201253 1203508 - 4911360 +7 chr1 1201253 1206909 - 4282271 +8 chr1 1201253 1206909 - 4907959 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 1201253 | 1206909 | a | 0 | ... | +| chr1 | 1201253 | 1206909 | a | 0 | ... | +| chr1 | 1201253 | 1203508 | a | 0 | ... | +| chr1 | 1201253 | 1203508 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 4 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +2 chr1 1201253 1203508 - 4285672 +3 chr1 1201253 1203508 - 4911360 +0 chr1 1201253 1206909 - 4282271 +1 chr1 1201253 1206909 - 4907959 +df2 + Chromosome Start End Strand Distance +2 chr1 1201253 1203508 - 4285672 +3 chr1 1201253 1203508 - 4911360 +7 chr1 1201253 1206909 - 4282271 +8 chr1 1201253 1206909 - 4907959 +Actual + Chromosome Start End Strand Distance +0 chr1 1201253 1203508 - 4285672 +1 chr1 1201253 1203508 - 4911360 +2 chr1 1201253 1206909 - 4282271 +3 chr1 1201253 1206909 - 4907959 + +Expected + Chromosome Start End Strand Distance +0 chr1 1201253 1203508 - 4285672 +1 chr1 1201253 1203508 - 4911360 +2 chr1 1201253 1206909 - 4282271 +3 chr1 1201253 1206909 - 4907959 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=4, step=1) +Expected index +RangeIndex(start=0, stop=4, step=1) +index equal [ True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpj13ayfgz/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpj13ayfgz/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +5 chr1 1201253 1205946 - 4283234 +6 chr1 1201253 1205946 - 4908922 +7 chr1 1201253 1205946 - 4283234 +8 chr1 1201253 1205946 - 4908922 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 1201253 | 1205946 | a | 0 | ... | +| chr1 | 1201253 | 1205946 | a | 0 | ... | +| chr1 | 1201253 | 1205946 | a | 0 | ... | +| chr1 | 1201253 | 1205946 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 4 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 1201253 1205946 - 4283234 +2 chr1 1201253 1205946 - 4283234 +1 chr1 1201253 1205946 - 4908922 +3 chr1 1201253 1205946 - 4908922 +df2 + Chromosome Start End Strand Distance +5 chr1 1201253 1205946 - 4283234 +7 chr1 1201253 1205946 - 4283234 +6 chr1 1201253 1205946 - 4908922 +8 chr1 1201253 1205946 - 4908922 +Actual + Chromosome Start End Strand Distance +0 chr1 1201253 1205946 - 4283234 +1 chr1 1201253 1205946 - 4283234 +2 chr1 1201253 1205946 - 4908922 +3 chr1 1201253 1205946 - 4908922 + +Expected + Chromosome Start End Strand Distance +0 chr1 1201253 1205946 - 4283234 +1 chr1 1201253 1205946 - 4283234 +2 chr1 1201253 1205946 - 4908922 +3 chr1 1201253 1205946 - 4908922 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=4, step=1) +Expected index +RangeIndex(start=0, stop=4, step=1) +index equal [ True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp1js3ha8f/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp1js3ha8f/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +5 chr1 1201253 1205946 - 4283234 +6 chr1 1201253 1205946 - 4908922 +7 chr1 1201253 1205946 - 4283234 +8 chr1 1201253 1205946 - 4908922 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 1201253 | 1205946 | a | 0 | ... | +| chr1 | 1201253 | 1205946 | a | 0 | ... | +| chr1 | 1201253 | 1205946 | a | 0 | ... | +| chr1 | 1201253 | 1205946 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 4 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 1201253 1205946 - 4283234 +2 chr1 1201253 1205946 - 4283234 +1 chr1 1201253 1205946 - 4908922 +3 chr1 1201253 1205946 - 4908922 +df2 + Chromosome Start End Strand Distance +5 chr1 1201253 1205946 - 4283234 +7 chr1 1201253 1205946 - 4283234 +6 chr1 1201253 1205946 - 4908922 +8 chr1 1201253 1205946 - 4908922 +Actual + Chromosome Start End Strand Distance +0 chr1 1201253 1205946 - 4283234 +1 chr1 1201253 1205946 - 4283234 +2 chr1 1201253 1205946 - 4908922 +3 chr1 1201253 1205946 - 4908922 + +Expected + Chromosome Start End Strand Distance +0 chr1 1201253 1205946 - 4283234 +1 chr1 1201253 1205946 - 4283234 +2 chr1 1201253 1205946 - 4908922 +3 chr1 1201253 1205946 - 4908922 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=4, step=1) +Expected index +RangeIndex(start=0, stop=4, step=1) +index equal [ True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpru9qqpgf/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpru9qqpgf/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +5 chr1 9 18 - 8 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 9 | 18 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 9 18 - 8 +df2 + Chromosome Start End Strand Distance +5 chr1 9 18 - 8 +Actual + Chromosome Start End Strand Distance +0 chr1 9 18 - 8 + +Expected + Chromosome Start End Strand Distance +0 chr1 9 18 - 8 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=1, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +index equal [ True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpvu0tqunl/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpvu0tqunl/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +5 chr1 9 18 - 8 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 9 | 18 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 9 18 - 8 +df2 + Chromosome Start End Strand Distance +5 chr1 9 18 - 8 +Actual + Chromosome Start End Strand Distance +0 chr1 9 18 - 8 + +Expected + Chromosome Start End Strand Distance +0 chr1 9 18 - 8 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=1, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +index equal [ True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp05u4hj0e/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp05u4hj0e/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +5 chr1 9 18 + 8 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 9 | 18 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 9 18 + 8 +df2 + Chromosome Start End Strand Distance +5 chr1 9 18 + 8 +Actual + Chromosome Start End Strand Distance +0 chr1 9 18 + 8 + +Expected + Chromosome Start End Strand Distance +0 chr1 9 18 + 8 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=1, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +index equal [ True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpw7at7lo0/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpw7at7lo0/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp7a_nvy5l/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp7a_nvy5l/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp2zhnjszj/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp2zhnjszj/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpsr6f90bd/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpsr6f90bd/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpvu49sye8/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpvu49sye8/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpjzba0f9x/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpjzba0f9x/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmphyrtzvjh/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmphyrtzvjh/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmplauofevf/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmplauofevf/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 1410133 1413613 + 1628662 +1 chr1 1410133 1413613 + 2147202 +7 chr7 6602063 6605164 - 3538372 +9 chrY 3521306 3531106 + 475277 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 1410133 | 1413613 | a | 0 | ... | +| chr1 | 1410133 | 1413613 | a | 0 | ... | +| chr7 | 6602063 | 6605164 | a | 0 | ... | +| chrY | 3521306 | 3531106 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 4 rows and 12 columns from 3 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 1410133 1413613 + 1628662 +1 chr1 1410133 1413613 + 2147202 +3 chrY 3521306 3531106 + 475277 +2 chr7 6602063 6605164 - 3538372 +df2 + Chromosome Start End Strand Distance +0 chr1 1410133 1413613 + 1628662 +1 chr1 1410133 1413613 + 2147202 +9 chrY 3521306 3531106 + 475277 +7 chr7 6602063 6605164 - 3538372 +Actual + Chromosome Start End Strand Distance +0 chr1 1410133 1413613 + 1628662 +1 chr1 1410133 1413613 + 2147202 +2 chr7 6602063 6605164 - 3538372 +3 chrY 3521306 3531106 + 475277 + +Expected + Chromosome Start End Strand Distance +0 chr1 1410133 1413613 + 1628662 +1 chr1 1410133 1413613 + 2147202 +2 chr7 6602063 6605164 - 3538372 +3 chrY 3521306 3531106 + 475277 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=4, step=1) +Expected index +RangeIndex(start=0, stop=4, step=1) +index equal [ True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpcp1alzcg/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpcp1alzcg/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +1 chr1 6780047 6785407 - 6780046 +4 chr6 1653395 1656496 - 1653394 +6 chr7 6602063 6605164 - 6602062 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 6780047 | 6785407 | a | 0 | ... | +| chr6 | 1653395 | 1656496 | a | 0 | ... | +| chr7 | 6602063 | 6605164 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 3 rows and 12 columns from 3 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +1 chr6 1653395 1656496 - 1653394 +2 chr7 6602063 6605164 - 6602062 +0 chr1 6780047 6785407 - 6780046 +df2 + Chromosome Start End Strand Distance +4 chr6 1653395 1656496 - 1653394 +6 chr7 6602063 6605164 - 6602062 +1 chr1 6780047 6785407 - 6780046 +Actual + Chromosome Start End Strand Distance +0 chr1 6780047 6785407 - 6780046 +1 chr6 1653395 1656496 - 1653394 +2 chr7 6602063 6605164 - 6602062 + +Expected + Chromosome Start End Strand Distance +0 chr1 6780047 6785407 - 6780046 +1 chr6 1653395 1656496 - 1653394 +2 chr7 6602063 6605164 - 6602062 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=3, step=1) +Expected index +RangeIndex(start=0, stop=3, step=1) +index equal [ True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp7od92kiv/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp7od92kiv/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 1410133 1413613 + 5366435 +1 chr1 6780047 6785407 - 5366435 +5 chr7 5575555 5579185 + 1022879 +6 chr7 6602063 6605164 - 1022879 +7 chr7 6602063 6605164 - 3186841 +8 chr7 9792004 9795105 + 3186841 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 1410133 | 1413613 | a | 0 | ... | +| chr1 | 6780047 | 6785407 | a | 0 | ... | +| chr7 | 5575555 | 5579185 | a | 0 | ... | +| chr7 | 9792004 | 9795105 | a | 0 | ... | +| chr7 | 6602063 | 6605164 | a | 0 | ... | +| chr7 | 6602063 | 6605164 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 6 rows and 12 columns from 2 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 1410133 1413613 + 5366435 +2 chr7 5575555 5579185 + 1022879 +4 chr7 6602063 6605164 - 1022879 +5 chr7 6602063 6605164 - 3186841 +1 chr1 6780047 6785407 - 5366435 +3 chr7 9792004 9795105 + 3186841 +df2 + Chromosome Start End Strand Distance +0 chr1 1410133 1413613 + 5366435 +5 chr7 5575555 5579185 + 1022879 +6 chr7 6602063 6605164 - 1022879 +7 chr7 6602063 6605164 - 3186841 +1 chr1 6780047 6785407 - 5366435 +8 chr7 9792004 9795105 + 3186841 +Actual + Chromosome Start End Strand Distance +0 chr1 1410133 1413613 + 5366435 +1 chr1 6780047 6785407 - 5366435 +2 chr7 5575555 5579185 + 1022879 +3 chr7 6602063 6605164 - 1022879 +4 chr7 6602063 6605164 - 3186841 +5 chr7 9792004 9795105 + 3186841 + +Expected + Chromosome Start End Strand Distance +0 chr1 1410133 1413613 + 5366435 +1 chr1 6780047 6785407 - 5366435 +2 chr7 5575555 5579185 + 1022879 +3 chr7 6602063 6605164 - 1022879 +4 chr7 6602063 6605164 - 3186841 +5 chr7 9792004 9795105 + 3186841 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=6, step=1) +Expected index +RangeIndex(start=0, stop=6, step=1) +index equal [ True True True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp0lsmv606/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp0lsmv606/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 1410133 1413613 + 5366435 +1 chr1 6780047 6785407 - 5366435 +5 chr7 5575555 5579185 + 1022879 +6 chr7 6602063 6605164 - 1022879 +7 chr7 6602063 6605164 - 3186841 +8 chr7 9792004 9795105 + 3186841 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 1410133 | 1413613 | a | 0 | ... | +| chr1 | 6780047 | 6785407 | a | 0 | ... | +| chr7 | 5575555 | 5579185 | a | 0 | ... | +| chr7 | 9792004 | 9795105 | a | 0 | ... | +| chr7 | 6602063 | 6605164 | a | 0 | ... | +| chr7 | 6602063 | 6605164 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 6 rows and 12 columns from 2 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 1410133 1413613 + 5366435 +2 chr7 5575555 5579185 + 1022879 +4 chr7 6602063 6605164 - 1022879 +5 chr7 6602063 6605164 - 3186841 +1 chr1 6780047 6785407 - 5366435 +3 chr7 9792004 9795105 + 3186841 +df2 + Chromosome Start End Strand Distance +0 chr1 1410133 1413613 + 5366435 +5 chr7 5575555 5579185 + 1022879 +6 chr7 6602063 6605164 - 1022879 +7 chr7 6602063 6605164 - 3186841 +1 chr1 6780047 6785407 - 5366435 +8 chr7 9792004 9795105 + 3186841 +Actual + Chromosome Start End Strand Distance +0 chr1 1410133 1413613 + 5366435 +1 chr1 6780047 6785407 - 5366435 +2 chr7 5575555 5579185 + 1022879 +3 chr7 6602063 6605164 - 1022879 +4 chr7 6602063 6605164 - 3186841 +5 chr7 9792004 9795105 + 3186841 + +Expected + Chromosome Start End Strand Distance +0 chr1 1410133 1413613 + 5366435 +1 chr1 6780047 6785407 - 5366435 +2 chr7 5575555 5579185 + 1022879 +3 chr7 6602063 6605164 - 1022879 +4 chr7 6602063 6605164 - 3186841 +5 chr7 9792004 9795105 + 3186841 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=6, step=1) +Expected index +RangeIndex(start=0, stop=6, step=1) +index equal [ True True True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpbazuc0h4/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpbazuc0h4/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 1410133 1413613 + 1400722 +1 chr1 1410133 1413613 + 1403674 +2 chr1 6780047 6785407 - 6774559 +3 chr19 6780047 6782739 + 6780041 +9 chrY 3521306 3531106 + 3515792 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 1410133 | 1413613 | a | 0 | ... | +| chr1 | 1410133 | 1413613 | a | 0 | ... | +| chr1 | 6780047 | 6785407 | a | 0 | ... | +| chr19 | 6780047 | 6782739 | a | 0 | ... | +| chrY | 3521306 | 3531106 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 5 rows and 12 columns from 3 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 1410133 1413613 + 1400722 +1 chr1 1410133 1413613 + 1403674 +4 chrY 3521306 3531106 + 3515792 +3 chr19 6780047 6782739 + 6780041 +2 chr1 6780047 6785407 - 6774559 +df2 + Chromosome Start End Strand Distance +0 chr1 1410133 1413613 + 1400722 +1 chr1 1410133 1413613 + 1403674 +9 chrY 3521306 3531106 + 3515792 +3 chr19 6780047 6782739 + 6780041 +2 chr1 6780047 6785407 - 6774559 +Actual + Chromosome Start End Strand Distance +0 chr1 1410133 1413613 + 1400722 +1 chr1 1410133 1413613 + 1403674 +2 chr1 6780047 6785407 - 6774559 +3 chr19 6780047 6782739 + 6780041 +4 chrY 3521306 3531106 + 3515792 + +Expected + Chromosome Start End Strand Distance +0 chr1 1410133 1413613 + 1400722 +1 chr1 1410133 1413613 + 1403674 +2 chr1 6780047 6785407 - 6774559 +3 chr19 6780047 6782739 + 6780041 +4 chrY 3521306 3531106 + 3515792 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=5, step=1) +Expected index +RangeIndex(start=0, stop=5, step=1) +index equal [ True True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp718a4kpc/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp718a4kpc/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 1410133 1413613 + 1410132 +1 chr1 6780047 6785407 - 6780040 +2 chr1 6780047 6785407 - 6780046 +3 chr19 6780047 6782739 + 6780046 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 1410133 | 1413613 | a | 0 | ... | +| chr1 | 6780047 | 6785407 | a | 0 | ... | +| chr1 | 6780047 | 6785407 | a | 0 | ... | +| chr19 | 6780047 | 6782739 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 4 rows and 12 columns from 2 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 1410133 1413613 + 1410132 +3 chr19 6780047 6782739 + 6780046 +1 chr1 6780047 6785407 - 6780040 +2 chr1 6780047 6785407 - 6780046 +df2 + Chromosome Start End Strand Distance +0 chr1 1410133 1413613 + 1410132 +3 chr19 6780047 6782739 + 6780046 +1 chr1 6780047 6785407 - 6780040 +2 chr1 6780047 6785407 - 6780046 +Actual + Chromosome Start End Strand Distance +0 chr1 1410133 1413613 + 1410132 +1 chr1 6780047 6785407 - 6780040 +2 chr1 6780047 6785407 - 6780046 +3 chr19 6780047 6782739 + 6780046 + +Expected + Chromosome Start End Strand Distance +0 chr1 1410133 1413613 + 1410132 +1 chr1 6780047 6785407 - 6780040 +2 chr1 6780047 6785407 - 6780046 +3 chr19 6780047 6782739 + 6780046 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=4, step=1) +Expected index +RangeIndex(start=0, stop=4, step=1) +index equal [ True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpxo03t4t9/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpxo03t4t9/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 1410133 1413613 + 1410126 +1 chr1 1410133 1413613 + 1410127 +3 chr19 6780047 6782739 + 6780041 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 1410133 | 1413613 | a | 0 | ... | +| chr1 | 1410133 | 1413613 | a | 0 | ... | +| chr19 | 6780047 | 6782739 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 3 rows and 12 columns from 2 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 1410133 1413613 + 1410126 +1 chr1 1410133 1413613 + 1410127 +2 chr19 6780047 6782739 + 6780041 +df2 + Chromosome Start End Strand Distance +0 chr1 1410133 1413613 + 1410126 +1 chr1 1410133 1413613 + 1410127 +3 chr19 6780047 6782739 + 6780041 +Actual + Chromosome Start End Strand Distance +0 chr1 1410133 1413613 + 1410126 +1 chr1 1410133 1413613 + 1410127 +2 chr19 6780047 6782739 + 6780041 + +Expected + Chromosome Start End Strand Distance +0 chr1 1410133 1413613 + 1410126 +1 chr1 1410133 1413613 + 1410127 +2 chr19 6780047 6782739 + 6780041 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=3, step=1) +Expected index +RangeIndex(start=0, stop=3, step=1) +index equal [ True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp_9yhodsp/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp_9yhodsp/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 2667475 2674928 + 527076 +1 chr1 5146923 5153574 + 1941855 +2 chr1 5146923 5153574 + 1943976 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 2667475 | 2674928 | a | 0 | ... | +| chr1 | 5146923 | 5153574 | a | 0 | ... | +| chr1 | 5146923 | 5153574 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 3 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 2667475 2674928 + 527076 +1 chr1 5146923 5153574 + 1941855 +2 chr1 5146923 5153574 + 1943976 +df2 + Chromosome Start End Strand Distance +0 chr1 2667475 2674928 + 527076 +1 chr1 5146923 5153574 + 1941855 +2 chr1 5146923 5153574 + 1943976 +Actual + Chromosome Start End Strand Distance +0 chr1 2667475 2674928 + 527076 +1 chr1 5146923 5153574 + 1941855 +2 chr1 5146923 5153574 + 1943976 + +Expected + Chromosome Start End Strand Distance +0 chr1 2667475 2674928 + 527076 +1 chr1 5146923 5153574 + 1941855 +2 chr1 5146923 5153574 + 1943976 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=3, step=1) +Expected index +RangeIndex(start=0, stop=3, step=1) +index equal [ True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp0c5aryih/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp0c5aryih/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +2 chr15 2092175 2095433 - 5235958 +3 chr15 2092175 2095433 - 7627316 +4 chr15 7331390 7335971 + 5235958 +5 chr15 9722748 9724952 + 7627316 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr15 | 9722748 | 9724952 | a | 0 | ... | +| chr15 | 7331390 | 7335971 | a | 0 | ... | +| chr15 | 2092175 | 2095433 | a | 0 | ... | +| chr15 | 2092175 | 2095433 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 4 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +2 chr15 2092175 2095433 - 5235958 +3 chr15 2092175 2095433 - 7627316 +1 chr15 7331390 7335971 + 5235958 +0 chr15 9722748 9724952 + 7627316 +df2 + Chromosome Start End Strand Distance +2 chr15 2092175 2095433 - 5235958 +3 chr15 2092175 2095433 - 7627316 +4 chr15 7331390 7335971 + 5235958 +5 chr15 9722748 9724952 + 7627316 +Actual + Chromosome Start End Strand Distance +0 chr15 2092175 2095433 - 5235958 +1 chr15 2092175 2095433 - 7627316 +2 chr15 7331390 7335971 + 5235958 +3 chr15 9722748 9724952 + 7627316 + +Expected + Chromosome Start End Strand Distance +0 chr15 2092175 2095433 - 5235958 +1 chr15 2092175 2095433 - 7627316 +2 chr15 7331390 7335971 + 5235958 +3 chr15 9722748 9724952 + 7627316 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=4, step=1) +Expected index +RangeIndex(start=0, stop=4, step=1) +index equal [ True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpv3v67s8_/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpv3v67s8_/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +2 chr15 2092175 2095433 - 2092173 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr15 | 2092175 | 2095433 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr15 2092175 2095433 - 2092173 +df2 + Chromosome Start End Strand Distance +2 chr15 2092175 2095433 - 2092173 +Actual + Chromosome Start End Strand Distance +0 chr15 2092175 2095433 - 2092173 + +Expected + Chromosome Start End Strand Distance +0 chr15 2092175 2095433 - 2092173 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=1, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +index equal [ True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpjhazs9fk/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpjhazs9fk/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +1 chr15 2092175 2095433 - 2092173 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr15 | 2092175 | 2095433 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr15 2092175 2095433 - 2092173 +df2 + Chromosome Start End Strand Distance +1 chr15 2092175 2095433 - 2092173 +Actual + Chromosome Start End Strand Distance +0 chr15 2092175 2095433 - 2092173 + +Expected + Chromosome Start End Strand Distance +0 chr15 2092175 2095433 - 2092173 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=1, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +index equal [ True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpdy_82dfs/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpdy_82dfs/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +1 chr15 2092175 2095433 - 2092173 +2 chr15 2092175 2095433 - 2092174 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr15 | 2092175 | 2095433 | a | 0 | ... | +| chr15 | 2092175 | 2095433 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr15 2092175 2095433 - 2092173 +1 chr15 2092175 2095433 - 2092174 +df2 + Chromosome Start End Strand Distance +1 chr15 2092175 2095433 - 2092173 +2 chr15 2092175 2095433 - 2092174 +Actual + Chromosome Start End Strand Distance +0 chr15 2092175 2095433 - 2092173 +1 chr15 2092175 2095433 - 2092174 + +Expected + Chromosome Start End Strand Distance +0 chr15 2092175 2095433 - 2092173 +1 chr15 2092175 2095433 - 2092174 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=2, step=1) +Expected index +RangeIndex(start=0, stop=2, step=1) +index equal [ True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp07fmumth/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp07fmumth/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpwebpilvn/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpwebpilvn/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpw6pcd0oh/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpw6pcd0oh/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpbje2xi0k/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpbje2xi0k/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpytk6b5qm/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpytk6b5qm/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpksike46s/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpksike46s/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 2380380 2386534 - 2373690 +1 chr1 5519120 5519121 - 5512430 +2 chr1 8507101 8515980 + 331538 +3 chr1 8507101 8515980 + 1359105 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 8507101 | 8515980 | a | 0 | ... | +| chr1 | 8507101 | 8515980 | a | 0 | ... | +| chr1 | 5519120 | 5519121 | a | 0 | ... | +| chr1 | 2380380 | 2386534 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 4 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +3 chr1 2380380 2386534 - 2373690 +2 chr1 5519120 5519121 - 5512430 +0 chr1 8507101 8515980 + 331538 +1 chr1 8507101 8515980 + 1359105 +df2 + Chromosome Start End Strand Distance +0 chr1 2380380 2386534 - 2373690 +1 chr1 5519120 5519121 - 5512430 +2 chr1 8507101 8515980 + 331538 +3 chr1 8507101 8515980 + 1359105 +Actual + Chromosome Start End Strand Distance +0 chr1 2380380 2386534 - 2373690 +1 chr1 5519120 5519121 - 5512430 +2 chr1 8507101 8515980 + 331538 +3 chr1 8507101 8515980 + 1359105 + +Expected + Chromosome Start End Strand Distance +0 chr1 2380380 2386534 - 2373690 +1 chr1 5519120 5519121 - 5512430 +2 chr1 8507101 8515980 + 331538 +3 chr1 8507101 8515980 + 1359105 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=4, step=1) +Expected index +RangeIndex(start=0, stop=4, step=1) +index equal [ True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpndhaerov/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpndhaerov/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp05dkyurp/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp05dkyurp/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpk7p7dvxd/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpk7p7dvxd/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmppzq0vbid/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmppzq0vbid/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp72cmkp29/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp72cmkp29/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +1 chr2 4235003 4235004 - 4235002 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr2 | 4235003 | 4235004 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr2 4235003 4235004 - 4235002 +df2 + Chromosome Start End Strand Distance +1 chr2 4235003 4235004 - 4235002 +Actual + Chromosome Start End Strand Distance +0 chr2 4235003 4235004 - 4235002 + +Expected + Chromosome Start End Strand Distance +0 chr2 4235003 4235004 - 4235002 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=1, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +index equal [ True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpgd44sadq/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpgd44sadq/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 38885 44633 - 8696416 +1 chr1 2058525 2064048 - 6677001 +4 chr1 3423528 3431230 - 5309819 +6 chr1 5102923 5110932 - 3630117 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 3423528 | 3431230 | a | 0 | ... | +| chr1 | 5102923 | 5110932 | a | 0 | ... | +| chr1 | 38885 | 44633 | a | 0 | ... | +| chr1 | 2058525 | 2064048 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 4 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +2 chr1 38885 44633 - 8696416 +3 chr1 2058525 2064048 - 6677001 +0 chr1 3423528 3431230 - 5309819 +1 chr1 5102923 5110932 - 3630117 +df2 + Chromosome Start End Strand Distance +0 chr1 38885 44633 - 8696416 +1 chr1 2058525 2064048 - 6677001 +4 chr1 3423528 3431230 - 5309819 +6 chr1 5102923 5110932 - 3630117 +Actual + Chromosome Start End Strand Distance +0 chr1 38885 44633 - 8696416 +1 chr1 2058525 2064048 - 6677001 +2 chr1 3423528 3431230 - 5309819 +3 chr1 5102923 5110932 - 3630117 + +Expected + Chromosome Start End Strand Distance +0 chr1 38885 44633 - 8696416 +1 chr1 2058525 2064048 - 6677001 +2 chr1 3423528 3431230 - 5309819 +3 chr1 5102923 5110932 - 3630117 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=4, step=1) +Expected index +RangeIndex(start=0, stop=4, step=1) +index equal [ True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpkxgtmln5/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpkxgtmln5/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +1 chr1 5523 11046 - 8730003 +2 chr1 5748 11496 - 8729553 +5 chr1 7702 15404 - 8725645 +6 chr1 8009 16018 - 8725031 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 7702 | 15404 | a | 0 | ... | +| chr1 | 8009 | 16018 | a | 0 | ... | +| chr1 | 5748 | 11496 | a | 0 | ... | +| chr1 | 5523 | 11046 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 4 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +3 chr1 5523 11046 - 8730003 +2 chr1 5748 11496 - 8729553 +0 chr1 7702 15404 - 8725645 +1 chr1 8009 16018 - 8725031 +df2 + Chromosome Start End Strand Distance +1 chr1 5523 11046 - 8730003 +2 chr1 5748 11496 - 8729553 +5 chr1 7702 15404 - 8725645 +6 chr1 8009 16018 - 8725031 +Actual + Chromosome Start End Strand Distance +0 chr1 5523 11046 - 8730003 +1 chr1 5748 11496 - 8729553 +2 chr1 7702 15404 - 8725645 +3 chr1 8009 16018 - 8725031 + +Expected + Chromosome Start End Strand Distance +0 chr1 5523 11046 - 8730003 +1 chr1 5748 11496 - 8729553 +2 chr1 7702 15404 - 8725645 +3 chr1 8009 16018 - 8725031 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=4, step=1) +Expected index +RangeIndex(start=0, stop=4, step=1) +index equal [ True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpb4hs5ga7/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpb4hs5ga7/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 4279 8558 + 8732491 +1 chr1 5523 11046 - 8730003 +2 chr1 5748 11496 - 8729553 +3 chr1 7438 14876 + 8726173 +4 chr1 7598 15196 + 8725853 +5 chr1 7702 15404 - 8725645 +6 chr1 8009 16018 - 8725031 +7 chr1 8109 16218 + 8724831 +8 chr1 8250 16500 + 8724549 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 8250 | 16500 | a | 0 | ... | +| chr1 | 4279 | 8558 | a | 0 | ... | +| chr1 | 8109 | 16218 | a | 0 | ... | +| chr1 | 7598 | 15196 | a | 0 | ... | +| ... | ... | ... | ... | ... | ... | +| chr1 | 7702 | 15404 | a | 0 | ... | +| chr1 | 8009 | 16018 | a | 0 | ... | +| chr1 | 5748 | 11496 | a | 0 | ... | +| chr1 | 5523 | 11046 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 9 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +1 chr1 4279 8558 + 8732491 +8 chr1 5523 11046 - 8730003 +7 chr1 5748 11496 - 8729553 +4 chr1 7438 14876 + 8726173 +3 chr1 7598 15196 + 8725853 +5 chr1 7702 15404 - 8725645 +6 chr1 8009 16018 - 8725031 +2 chr1 8109 16218 + 8724831 +0 chr1 8250 16500 + 8724549 +df2 + Chromosome Start End Strand Distance +0 chr1 4279 8558 + 8732491 +1 chr1 5523 11046 - 8730003 +2 chr1 5748 11496 - 8729553 +3 chr1 7438 14876 + 8726173 +4 chr1 7598 15196 + 8725853 +5 chr1 7702 15404 - 8725645 +6 chr1 8009 16018 - 8725031 +7 chr1 8109 16218 + 8724831 +8 chr1 8250 16500 + 8724549 +Actual + Chromosome Start End Strand Distance +0 chr1 4279 8558 + 8732491 +1 chr1 5523 11046 - 8730003 +2 chr1 5748 11496 - 8729553 +3 chr1 7438 14876 + 8726173 +4 chr1 7598 15196 + 8725853 +5 chr1 7702 15404 - 8725645 +6 chr1 8009 16018 - 8725031 +7 chr1 8109 16218 + 8724831 +8 chr1 8250 16500 + 8724549 + +Expected + Chromosome Start End Strand Distance +0 chr1 4279 8558 + 8732491 +1 chr1 5523 11046 - 8730003 +2 chr1 5748 11496 - 8729553 +3 chr1 7438 14876 + 8726173 +4 chr1 7598 15196 + 8725853 +5 chr1 7702 15404 - 8725645 +6 chr1 8009 16018 - 8725031 +7 chr1 8109 16218 + 8724831 +8 chr1 8250 16500 + 8724549 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=9, step=1) +Expected index +RangeIndex(start=0, stop=9, step=1) +index equal [ True True True True True True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpz4d8bl7n/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpz4d8bl7n/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp0zld1cq8/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp0zld1cq8/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpyxfo2fov/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpyxfo2fov/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpye24wbdy/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpye24wbdy/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpkmtth76e/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpkmtth76e/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 630226 630227 + 626764 +1 chr1 630226 630227 + 2663113 +2 chr1 2104866 2104867 + 1188473 +3 chr1 2104866 2104867 + 2101404 +4 chr1 2104866 2104867 + 1188473 +5 chr1 2104866 2104867 + 2101404 +6 chr1 2283357 2283358 + 1009982 +7 chr1 2283357 2283358 + 2279895 +8 chr1 3934836 3934837 + 639950 +9 chr1 3934836 3934837 + 3931374 +10 chr1 9244439 9244440 + 5949553 +11 chr1 9244439 9244440 + 9240977 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 2283357 | 2283358 | a | 0 | ... | +| chr1 | 2283357 | 2283358 | a | 0 | ... | +| chr1 | 630226 | 630227 | a | 0 | ... | +| chr1 | 630226 | 630227 | a | 0 | ... | +| ... | ... | ... | ... | ... | ... | +| chr1 | 2104866 | 2104867 | a | 0 | ... | +| chr1 | 2104866 | 2104867 | a | 0 | ... | +| chr1 | 3934836 | 3934837 | a | 0 | ... | +| chr1 | 3934836 | 3934837 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 12 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +2 chr1 630226 630227 + 626764 +3 chr1 630226 630227 + 2663113 +4 chr1 2104866 2104867 + 1188473 +8 chr1 2104866 2104867 + 1188473 +5 chr1 2104866 2104867 + 2101404 +9 chr1 2104866 2104867 + 2101404 +0 chr1 2283357 2283358 + 1009982 +1 chr1 2283357 2283358 + 2279895 +10 chr1 3934836 3934837 + 639950 +11 chr1 3934836 3934837 + 3931374 +6 chr1 9244439 9244440 + 5949553 +7 chr1 9244439 9244440 + 9240977 +df2 + Chromosome Start End Strand Distance +0 chr1 630226 630227 + 626764 +1 chr1 630226 630227 + 2663113 +2 chr1 2104866 2104867 + 1188473 +4 chr1 2104866 2104867 + 1188473 +3 chr1 2104866 2104867 + 2101404 +5 chr1 2104866 2104867 + 2101404 +6 chr1 2283357 2283358 + 1009982 +7 chr1 2283357 2283358 + 2279895 +8 chr1 3934836 3934837 + 639950 +9 chr1 3934836 3934837 + 3931374 +10 chr1 9244439 9244440 + 5949553 +11 chr1 9244439 9244440 + 9240977 +Actual + Chromosome Start End Strand Distance +0 chr1 630226 630227 + 626764 +1 chr1 630226 630227 + 2663113 +2 chr1 2104866 2104867 + 1188473 +3 chr1 2104866 2104867 + 1188473 +4 chr1 2104866 2104867 + 2101404 +5 chr1 2104866 2104867 + 2101404 +6 chr1 2283357 2283358 + 1009982 +7 chr1 2283357 2283358 + 2279895 +8 chr1 3934836 3934837 + 639950 +9 chr1 3934836 3934837 + 3931374 +10 chr1 9244439 9244440 + 5949553 +11 chr1 9244439 9244440 + 9240977 + +Expected + Chromosome Start End Strand Distance +0 chr1 630226 630227 + 626764 +1 chr1 630226 630227 + 2663113 +2 chr1 2104866 2104867 + 1188473 +3 chr1 2104866 2104867 + 1188473 +4 chr1 2104866 2104867 + 2101404 +5 chr1 2104866 2104867 + 2101404 +6 chr1 2283357 2283358 + 1009982 +7 chr1 2283357 2283358 + 2279895 +8 chr1 3934836 3934837 + 639950 +9 chr1 3934836 3934837 + 3931374 +10 chr1 9244439 9244440 + 5949553 +11 chr1 9244439 9244440 + 9240977 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=12, step=1) +Expected index +RangeIndex(start=0, stop=12, step=1) +index equal [ True True True True True True True True True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp47ew1ya4/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp47ew1ya4/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 630226 630227 + 626764 +1 chr1 630226 630227 + 628678 +2 chr1 2104866 2104867 + 2101404 +3 chr1 2104866 2104867 + 2103318 +4 chr1 2104866 2104867 + 2101404 +5 chr1 2104866 2104867 + 2103318 +6 chr1 2283357 2283358 + 2279895 +7 chr1 2283357 2283358 + 2281809 +8 chr1 3934836 3934837 + 3931374 +9 chr1 3934836 3934837 + 3933288 +10 chr1 9244439 9244440 + 9240977 +11 chr1 9244439 9244440 + 9242891 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 2283357 | 2283358 | a | 0 | ... | +| chr1 | 2283357 | 2283358 | a | 0 | ... | +| chr1 | 630226 | 630227 | a | 0 | ... | +| chr1 | 630226 | 630227 | a | 0 | ... | +| ... | ... | ... | ... | ... | ... | +| chr1 | 2104866 | 2104867 | a | 0 | ... | +| chr1 | 2104866 | 2104867 | a | 0 | ... | +| chr1 | 3934836 | 3934837 | a | 0 | ... | +| chr1 | 3934836 | 3934837 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 12 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +2 chr1 630226 630227 + 626764 +3 chr1 630226 630227 + 628678 +4 chr1 2104866 2104867 + 2101404 +8 chr1 2104866 2104867 + 2101404 +5 chr1 2104866 2104867 + 2103318 +9 chr1 2104866 2104867 + 2103318 +0 chr1 2283357 2283358 + 2279895 +1 chr1 2283357 2283358 + 2281809 +10 chr1 3934836 3934837 + 3931374 +11 chr1 3934836 3934837 + 3933288 +6 chr1 9244439 9244440 + 9240977 +7 chr1 9244439 9244440 + 9242891 +df2 + Chromosome Start End Strand Distance +0 chr1 630226 630227 + 626764 +1 chr1 630226 630227 + 628678 +2 chr1 2104866 2104867 + 2101404 +4 chr1 2104866 2104867 + 2101404 +3 chr1 2104866 2104867 + 2103318 +5 chr1 2104866 2104867 + 2103318 +6 chr1 2283357 2283358 + 2279895 +7 chr1 2283357 2283358 + 2281809 +8 chr1 3934836 3934837 + 3931374 +9 chr1 3934836 3934837 + 3933288 +10 chr1 9244439 9244440 + 9240977 +11 chr1 9244439 9244440 + 9242891 +Actual + Chromosome Start End Strand Distance +0 chr1 630226 630227 + 626764 +1 chr1 630226 630227 + 628678 +2 chr1 2104866 2104867 + 2101404 +3 chr1 2104866 2104867 + 2101404 +4 chr1 2104866 2104867 + 2103318 +5 chr1 2104866 2104867 + 2103318 +6 chr1 2283357 2283358 + 2279895 +7 chr1 2283357 2283358 + 2281809 +8 chr1 3934836 3934837 + 3931374 +9 chr1 3934836 3934837 + 3933288 +10 chr1 9244439 9244440 + 9240977 +11 chr1 9244439 9244440 + 9242891 + +Expected + Chromosome Start End Strand Distance +0 chr1 630226 630227 + 626764 +1 chr1 630226 630227 + 628678 +2 chr1 2104866 2104867 + 2101404 +3 chr1 2104866 2104867 + 2101404 +4 chr1 2104866 2104867 + 2103318 +5 chr1 2104866 2104867 + 2103318 +6 chr1 2283357 2283358 + 2279895 +7 chr1 2283357 2283358 + 2281809 +8 chr1 3934836 3934837 + 3931374 +9 chr1 3934836 3934837 + 3933288 +10 chr1 9244439 9244440 + 9240977 +11 chr1 9244439 9244440 + 9242891 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=12, step=1) +Expected index +RangeIndex(start=0, stop=12, step=1) +index equal [ True True True True True True True True True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp_gefmwfn/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp_gefmwfn/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 630226 633248 + 626764 +1 chr1 630226 633248 + 628678 +2 chr1 2104866 2107888 + 2101404 +3 chr1 2104866 2107888 + 2103318 +4 chr1 2104866 2107888 + 2101404 +5 chr1 2104866 2107888 + 2103318 +6 chr1 2283357 2286379 + 2279895 +7 chr1 2283357 2286379 + 2281809 +8 chr1 3934836 3937858 + 3931374 +9 chr1 3934836 3937858 + 3933288 +10 chr1 9244439 9247461 + 9240977 +11 chr1 9244439 9247461 + 9242891 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 2283357 | 2286379 | a | 0 | ... | +| chr1 | 2283357 | 2286379 | a | 0 | ... | +| chr1 | 630226 | 633248 | a | 0 | ... | +| chr1 | 630226 | 633248 | a | 0 | ... | +| ... | ... | ... | ... | ... | ... | +| chr1 | 2104866 | 2107888 | a | 0 | ... | +| chr1 | 2104866 | 2107888 | a | 0 | ... | +| chr1 | 3934836 | 3937858 | a | 0 | ... | +| chr1 | 3934836 | 3937858 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 12 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +2 chr1 630226 633248 + 626764 +3 chr1 630226 633248 + 628678 +4 chr1 2104866 2107888 + 2101404 +8 chr1 2104866 2107888 + 2101404 +5 chr1 2104866 2107888 + 2103318 +9 chr1 2104866 2107888 + 2103318 +0 chr1 2283357 2286379 + 2279895 +1 chr1 2283357 2286379 + 2281809 +10 chr1 3934836 3937858 + 3931374 +11 chr1 3934836 3937858 + 3933288 +6 chr1 9244439 9247461 + 9240977 +7 chr1 9244439 9247461 + 9242891 +df2 + Chromosome Start End Strand Distance +0 chr1 630226 633248 + 626764 +1 chr1 630226 633248 + 628678 +2 chr1 2104866 2107888 + 2101404 +4 chr1 2104866 2107888 + 2101404 +3 chr1 2104866 2107888 + 2103318 +5 chr1 2104866 2107888 + 2103318 +6 chr1 2283357 2286379 + 2279895 +7 chr1 2283357 2286379 + 2281809 +8 chr1 3934836 3937858 + 3931374 +9 chr1 3934836 3937858 + 3933288 +10 chr1 9244439 9247461 + 9240977 +11 chr1 9244439 9247461 + 9242891 +Actual + Chromosome Start End Strand Distance +0 chr1 630226 633248 + 626764 +1 chr1 630226 633248 + 628678 +2 chr1 2104866 2107888 + 2101404 +3 chr1 2104866 2107888 + 2101404 +4 chr1 2104866 2107888 + 2103318 +5 chr1 2104866 2107888 + 2103318 +6 chr1 2283357 2286379 + 2279895 +7 chr1 2283357 2286379 + 2281809 +8 chr1 3934836 3937858 + 3931374 +9 chr1 3934836 3937858 + 3933288 +10 chr1 9244439 9247461 + 9240977 +11 chr1 9244439 9247461 + 9242891 + +Expected + Chromosome Start End Strand Distance +0 chr1 630226 633248 + 626764 +1 chr1 630226 633248 + 628678 +2 chr1 2104866 2107888 + 2101404 +3 chr1 2104866 2107888 + 2101404 +4 chr1 2104866 2107888 + 2103318 +5 chr1 2104866 2107888 + 2103318 +6 chr1 2283357 2286379 + 2279895 +7 chr1 2283357 2286379 + 2281809 +8 chr1 3934836 3937858 + 3931374 +9 chr1 3934836 3937858 + 3933288 +10 chr1 9244439 9247461 + 9240977 +11 chr1 9244439 9247461 + 9242891 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=12, step=1) +Expected index +RangeIndex(start=0, stop=12, step=1) +index equal [ True True True True True True True True True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp8low6vnk/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp8low6vnk/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpksrwu1s9/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpksrwu1s9/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpip05o46z/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpip05o46z/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmph67y8l1n/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmph67y8l1n/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 4162500 4164302 - 593271 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 4162500 | 4164302 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 4162500 4164302 - 593271 +df2 + Chromosome Start End Strand Distance +0 chr1 4162500 4164302 - 593271 +Actual + Chromosome Start End Strand Distance +0 chr1 4162500 4164302 - 593271 + +Expected + Chromosome Start End Strand Distance +0 chr1 4162500 4164302 - 593271 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=1, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +index equal [ True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmptf3b5lm2/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmptf3b5lm2/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 4162500 4164302 - 593271 +1 chr1 4162500 4164302 - 979624 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 4162500 | 4164302 | a | 0 | ... | +| chr1 | 4162500 | 4164302 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 4162500 4164302 - 593271 +1 chr1 4162500 4164302 - 979624 +df2 + Chromosome Start End Strand Distance +0 chr1 4162500 4164302 - 593271 +1 chr1 4162500 4164302 - 979624 +Actual + Chromosome Start End Strand Distance +0 chr1 4162500 4164302 - 593271 +1 chr1 4162500 4164302 - 979624 + +Expected + Chromosome Start End Strand Distance +0 chr1 4162500 4164302 - 593271 +1 chr1 4162500 4164302 - 979624 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=2, step=1) +Expected index +RangeIndex(start=0, stop=2, step=1) +index equal [ True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp3irctzos/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp3irctzos/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpkf2xpnli/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpkf2xpnli/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmphttmizt8/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmphttmizt8/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp3ppmstof/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp3ppmstof/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp_316iiqe/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp_316iiqe/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpufi8q9ru/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpufi8q9ru/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 4298629 4302937 - 2251959 +1 chr1 4298629 4302937 - 2579059 +2 chr1 7730122 7740037 - 847922 +3 chr1 7730122 7740037 - 1173634 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 7730122 | 7740037 | a | 0 | ... | +| chr1 | 7730122 | 7740037 | a | 0 | ... | +| chr1 | 4298629 | 4302937 | a | 0 | ... | +| chr1 | 4298629 | 4302937 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 4 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +2 chr1 4298629 4302937 - 2251959 +3 chr1 4298629 4302937 - 2579059 +0 chr1 7730122 7740037 - 847922 +1 chr1 7730122 7740037 - 1173634 +df2 + Chromosome Start End Strand Distance +0 chr1 4298629 4302937 - 2251959 +1 chr1 4298629 4302937 - 2579059 +2 chr1 7730122 7740037 - 847922 +3 chr1 7730122 7740037 - 1173634 +Actual + Chromosome Start End Strand Distance +0 chr1 4298629 4302937 - 2251959 +1 chr1 4298629 4302937 - 2579059 +2 chr1 7730122 7740037 - 847922 +3 chr1 7730122 7740037 - 1173634 + +Expected + Chromosome Start End Strand Distance +0 chr1 4298629 4302937 - 2251959 +1 chr1 4298629 4302937 - 2579059 +2 chr1 7730122 7740037 - 847922 +3 chr1 7730122 7740037 - 1173634 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=4, step=1) +Expected index +RangeIndex(start=0, stop=4, step=1) +index equal [ True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp8qtdl9zh/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp8qtdl9zh/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 4298629 4302937 + 4298628 +1 chr1 7730122 7740037 + 7730121 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 7730122 | 7740037 | a | 0 | ... | +| chr1 | 4298629 | 4302937 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +1 chr1 4298629 4302937 + 4298628 +0 chr1 7730122 7740037 + 7730121 +df2 + Chromosome Start End Strand Distance +0 chr1 4298629 4302937 + 4298628 +1 chr1 7730122 7740037 + 7730121 +Actual + Chromosome Start End Strand Distance +0 chr1 4298629 4302937 + 4298628 +1 chr1 7730122 7740037 + 7730121 + +Expected + Chromosome Start End Strand Distance +0 chr1 4298629 4302937 + 4298628 +1 chr1 7730122 7740037 + 7730121 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=2, step=1) +Expected index +RangeIndex(start=0, stop=2, step=1) +index equal [ True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpxp064sfn/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpxp064sfn/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 4298629 4302937 + 4298628 +1 chr1 7730122 7740037 + 7730121 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 7730122 | 7740037 | a | 0 | ... | +| chr1 | 4298629 | 4302937 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +1 chr1 4298629 4302937 + 4298628 +0 chr1 7730122 7740037 + 7730121 +df2 + Chromosome Start End Strand Distance +0 chr1 4298629 4302937 + 4298628 +1 chr1 7730122 7740037 + 7730121 +Actual + Chromosome Start End Strand Distance +0 chr1 4298629 4302937 + 4298628 +1 chr1 7730122 7740037 + 7730121 + +Expected + Chromosome Start End Strand Distance +0 chr1 4298629 4302937 + 4298628 +1 chr1 7730122 7740037 + 7730121 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=2, step=1) +Expected index +RangeIndex(start=0, stop=2, step=1) +index equal [ True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpkyinwdlr/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpkyinwdlr/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpdqzbhfjp/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpdqzbhfjp/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmps4mlzpmh/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmps4mlzpmh/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpv4qw86f0/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpv4qw86f0/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 1 4606 + 771030 +1 chr1 1 4606 + 3907951 +2 chr1 3011237 3012918 + 899639 +3 chr1 3011237 3012918 + 2052837 +4 chr1 3896400 3903088 + 9469 +5 chr1 3896400 3903088 + 1162667 +6 chr1 7965808 7974078 - 2025923 +7 chr1 7965808 7974078 - 4052834 +8 chr1 7967900 7973315 - 2026686 +9 chr1 7967900 7973315 - 4054926 +10 chr1 8234092 8242526 + 3167920 +11 chr1 8234092 8242526 + 4321118 +12 chr1 8792945 8798360 - 1201641 +13 chr1 8792945 8798360 - 4879971 +15 chr3 8458033 8462094 - 459641 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 8234092 | 8242526 | a | 0 | ... | +| chr1 | 8234092 | 8242526 | a | 0 | ... | +| chr1 | 1 | 4606 | a | 0 | ... | +| chr1 | 1 | 4606 | a | 0 | ... | +| ... | ... | ... | ... | ... | ... | +| chr1 | 7965808 | 7974078 | a | 0 | ... | +| chr1 | 7965808 | 7974078 | a | 0 | ... | +| chr1 | 8792945 | 8798360 | a | 0 | ... | +| chr1 | 8792945 | 8798360 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 15 rows and 12 columns from 2 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +2 chr1 1 4606 + 771030 +3 chr1 1 4606 + 3907951 +6 chr1 3011237 3012918 + 899639 +7 chr1 3011237 3012918 + 2052837 +4 chr1 3896400 3903088 + 9469 +5 chr1 3896400 3903088 + 1162667 +10 chr1 7965808 7974078 - 2025923 +11 chr1 7965808 7974078 - 4052834 +8 chr1 7967900 7973315 - 2026686 +9 chr1 7967900 7973315 - 4054926 +0 chr1 8234092 8242526 + 3167920 +1 chr1 8234092 8242526 + 4321118 +14 chr3 8458033 8462094 - 459641 +12 chr1 8792945 8798360 - 1201641 +13 chr1 8792945 8798360 - 4879971 +df2 + Chromosome Start End Strand Distance +0 chr1 1 4606 + 771030 +1 chr1 1 4606 + 3907951 +2 chr1 3011237 3012918 + 899639 +3 chr1 3011237 3012918 + 2052837 +4 chr1 3896400 3903088 + 9469 +5 chr1 3896400 3903088 + 1162667 +6 chr1 7965808 7974078 - 2025923 +7 chr1 7965808 7974078 - 4052834 +8 chr1 7967900 7973315 - 2026686 +9 chr1 7967900 7973315 - 4054926 +10 chr1 8234092 8242526 + 3167920 +11 chr1 8234092 8242526 + 4321118 +15 chr3 8458033 8462094 - 459641 +12 chr1 8792945 8798360 - 1201641 +13 chr1 8792945 8798360 - 4879971 +Actual + Chromosome Start End Strand Distance +0 chr1 1 4606 + 771030 +1 chr1 1 4606 + 3907951 +2 chr1 3011237 3012918 + 899639 +3 chr1 3011237 3012918 + 2052837 +4 chr1 3896400 3903088 + 9469 +5 chr1 3896400 3903088 + 1162667 +6 chr1 7965808 7974078 - 2025923 +7 chr1 7965808 7974078 - 4052834 +8 chr1 7967900 7973315 - 2026686 +9 chr1 7967900 7973315 - 4054926 +10 chr1 8234092 8242526 + 3167920 +11 chr1 8234092 8242526 + 4321118 +12 chr1 8792945 8798360 - 1201641 +13 chr1 8792945 8798360 - 4879971 +14 chr3 8458033 8462094 - 459641 + +Expected + Chromosome Start End Strand Distance +0 chr1 1 4606 + 771030 +1 chr1 1 4606 + 3907951 +2 chr1 3011237 3012918 + 899639 +3 chr1 3011237 3012918 + 2052837 +4 chr1 3896400 3903088 + 9469 +5 chr1 3896400 3903088 + 1162667 +6 chr1 7965808 7974078 - 2025923 +7 chr1 7965808 7974078 - 4052834 +8 chr1 7967900 7973315 - 2026686 +9 chr1 7967900 7973315 - 4054926 +10 chr1 8234092 8242526 + 3167920 +11 chr1 8234092 8242526 + 4321118 +12 chr1 8792945 8798360 - 1201641 +13 chr1 8792945 8798360 - 4879971 +14 chr3 8458033 8462094 - 459641 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=15, step=1) +Expected index +RangeIndex(start=0, stop=15, step=1) +index equal [ True True True True True True True True True True True True + True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmprtidj65u/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmprtidj65u/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 1 4606 + 7961203 +1 chr1 1 4606 + 7963295 +2 chr1 3011237 3012918 + 4952891 +3 chr1 3011237 3012918 + 4954983 +4 chr1 3896400 3903088 + 4062721 +5 chr1 3896400 3903088 + 4064813 +6 chr1 7965808 7974078 - 260015 +7 chr1 7965808 7974078 - 4062721 +8 chr1 7967900 7973315 - 260778 +9 chr1 7967900 7973315 - 4064813 +10 chr1 8234092 8242526 + 260015 +11 chr1 8234092 8242526 + 260778 +12 chr1 8792945 8798360 - 550420 +13 chr1 8792945 8798360 - 4889858 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 8234092 | 8242526 | a | 0 | ... | +| chr1 | 8234092 | 8242526 | a | 0 | ... | +| chr1 | 1 | 4606 | a | 0 | ... | +| chr1 | 1 | 4606 | a | 0 | ... | +| ... | ... | ... | ... | ... | ... | +| chr1 | 7965808 | 7974078 | a | 0 | ... | +| chr1 | 7965808 | 7974078 | a | 0 | ... | +| chr1 | 8792945 | 8798360 | a | 0 | ... | +| chr1 | 8792945 | 8798360 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 14 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +2 chr1 1 4606 + 7961203 +3 chr1 1 4606 + 7963295 +6 chr1 3011237 3012918 + 4952891 +7 chr1 3011237 3012918 + 4954983 +4 chr1 3896400 3903088 + 4062721 +5 chr1 3896400 3903088 + 4064813 +10 chr1 7965808 7974078 - 260015 +11 chr1 7965808 7974078 - 4062721 +8 chr1 7967900 7973315 - 260778 +9 chr1 7967900 7973315 - 4064813 +0 chr1 8234092 8242526 + 260015 +1 chr1 8234092 8242526 + 260778 +12 chr1 8792945 8798360 - 550420 +13 chr1 8792945 8798360 - 4889858 +df2 + Chromosome Start End Strand Distance +0 chr1 1 4606 + 7961203 +1 chr1 1 4606 + 7963295 +2 chr1 3011237 3012918 + 4952891 +3 chr1 3011237 3012918 + 4954983 +4 chr1 3896400 3903088 + 4062721 +5 chr1 3896400 3903088 + 4064813 +6 chr1 7965808 7974078 - 260015 +7 chr1 7965808 7974078 - 4062721 +8 chr1 7967900 7973315 - 260778 +9 chr1 7967900 7973315 - 4064813 +10 chr1 8234092 8242526 + 260015 +11 chr1 8234092 8242526 + 260778 +12 chr1 8792945 8798360 - 550420 +13 chr1 8792945 8798360 - 4889858 +Actual + Chromosome Start End Strand Distance +0 chr1 1 4606 + 7961203 +1 chr1 1 4606 + 7963295 +2 chr1 3011237 3012918 + 4952891 +3 chr1 3011237 3012918 + 4954983 +4 chr1 3896400 3903088 + 4062721 +5 chr1 3896400 3903088 + 4064813 +6 chr1 7965808 7974078 - 260015 +7 chr1 7965808 7974078 - 4062721 +8 chr1 7967900 7973315 - 260778 +9 chr1 7967900 7973315 - 4064813 +10 chr1 8234092 8242526 + 260015 +11 chr1 8234092 8242526 + 260778 +12 chr1 8792945 8798360 - 550420 +13 chr1 8792945 8798360 - 4889858 + +Expected + Chromosome Start End Strand Distance +0 chr1 1 4606 + 7961203 +1 chr1 1 4606 + 7963295 +2 chr1 3011237 3012918 + 4952891 +3 chr1 3011237 3012918 + 4954983 +4 chr1 3896400 3903088 + 4062721 +5 chr1 3896400 3903088 + 4064813 +6 chr1 7965808 7974078 - 260015 +7 chr1 7965808 7974078 - 4062721 +8 chr1 7967900 7973315 - 260778 +9 chr1 7967900 7973315 - 4064813 +10 chr1 8234092 8242526 + 260015 +11 chr1 8234092 8242526 + 260778 +12 chr1 8792945 8798360 - 550420 +13 chr1 8792945 8798360 - 4889858 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=14, step=1) +Expected index +RangeIndex(start=0, stop=14, step=1) +index equal [ True True True True True True True True True True True True + True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp6n80vdof/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp6n80vdof/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 1 4606 + 3006632 +1 chr1 1 4606 + 8788340 +2 chr1 3011237 3012918 + 3011236 +3 chr1 3011237 3012918 + 5780028 +4 chr1 3896400 3903088 + 885163 +5 chr1 3896400 3903088 + 3896399 +8 chr1 8234092 8242526 + 550420 +9 chr1 8234092 8242526 + 5222855 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 8234092 | 8242526 | a | 0 | ... | +| chr1 | 8234092 | 8242526 | a | 0 | ... | +| chr1 | 1 | 4606 | a | 0 | ... | +| chr1 | 1 | 4606 | a | 0 | ... | +| chr1 | 3896400 | 3903088 | a | 0 | ... | +| chr1 | 3896400 | 3903088 | a | 0 | ... | +| chr1 | 3011237 | 3012918 | a | 0 | ... | +| chr1 | 3011237 | 3012918 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 8 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +2 chr1 1 4606 + 3006632 +3 chr1 1 4606 + 8788340 +6 chr1 3011237 3012918 + 3011236 +7 chr1 3011237 3012918 + 5780028 +4 chr1 3896400 3903088 + 885163 +5 chr1 3896400 3903088 + 3896399 +0 chr1 8234092 8242526 + 550420 +1 chr1 8234092 8242526 + 5222855 +df2 + Chromosome Start End Strand Distance +0 chr1 1 4606 + 3006632 +1 chr1 1 4606 + 8788340 +2 chr1 3011237 3012918 + 3011236 +3 chr1 3011237 3012918 + 5780028 +4 chr1 3896400 3903088 + 885163 +5 chr1 3896400 3903088 + 3896399 +8 chr1 8234092 8242526 + 550420 +9 chr1 8234092 8242526 + 5222855 +Actual + Chromosome Start End Strand Distance +0 chr1 1 4606 + 3006632 +1 chr1 1 4606 + 8788340 +2 chr1 3011237 3012918 + 3011236 +3 chr1 3011237 3012918 + 5780028 +4 chr1 3896400 3903088 + 885163 +5 chr1 3896400 3903088 + 3896399 +6 chr1 8234092 8242526 + 550420 +7 chr1 8234092 8242526 + 5222855 + +Expected + Chromosome Start End Strand Distance +0 chr1 1 4606 + 3006632 +1 chr1 1 4606 + 8788340 +2 chr1 3011237 3012918 + 3011236 +3 chr1 3011237 3012918 + 5780028 +4 chr1 3896400 3903088 + 885163 +5 chr1 3896400 3903088 + 3896399 +6 chr1 8234092 8242526 + 550420 +7 chr1 8234092 8242526 + 5222855 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=8, step=1) +Expected index +RangeIndex(start=0, stop=8, step=1) +index equal [ True True True True True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpu9jn_9na/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpu9jn_9na/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmplpj8jtk1/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmplpj8jtk1/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmph6epcmo_/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmph6epcmo_/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpqpf38lg_/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpqpf38lg_/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpzzupsas1/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpzzupsas1/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 366702 369309 + 2525064 +1 chr1 366702 369309 + 3938226 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 366702 | 369309 | a | 0 | ... | +| chr1 | 366702 | 369309 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 366702 369309 + 2525064 +1 chr1 366702 369309 + 3938226 +df2 + Chromosome Start End Strand Distance +0 chr1 366702 369309 + 2525064 +1 chr1 366702 369309 + 3938226 +Actual + Chromosome Start End Strand Distance +0 chr1 366702 369309 + 2525064 +1 chr1 366702 369309 + 3938226 + +Expected + Chromosome Start End Strand Distance +0 chr1 366702 369309 + 2525064 +1 chr1 366702 369309 + 3938226 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=2, step=1) +Expected index +RangeIndex(start=0, stop=2, step=1) +index equal [ True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmptpaxqe7k/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmptpaxqe7k/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpexxqccn8/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpexxqccn8/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +8 chr2 2426759 2436422 + 2426758 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr2 | 2426759 | 2436422 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr2 2426759 2436422 + 2426758 +df2 + Chromosome Start End Strand Distance +8 chr2 2426759 2436422 + 2426758 +Actual + Chromosome Start End Strand Distance +0 chr2 2426759 2436422 + 2426758 + +Expected + Chromosome Start End Strand Distance +0 chr2 2426759 2436422 + 2426758 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=1, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +index equal [ True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp3vc_0axe/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp3vc_0axe/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpsd7yelgs/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpsd7yelgs/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp12zrm9qt/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp12zrm9qt/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 1 2 - 1 +1 chr1 1 2 - 1 +2 chr1 1 2 - 1 +3 chr1 1 2 - 1 +4 chr1 1 2 - 1 +5 chr1 1 2 - 1 +6 chr1 1 2 - 1 +7 chr1 1 2 - 1 +8 chr1 1 2 - 1 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 1 | 2 | a | 0 | ... | +| chr1 | 1 | 2 | a | 0 | ... | +| chr1 | 1 | 2 | a | 0 | ... | +| chr1 | 1 | 2 | a | 0 | ... | +| ... | ... | ... | ... | ... | ... | +| chr1 | 1 | 2 | a | 0 | ... | +| chr1 | 1 | 2 | a | 0 | ... | +| chr1 | 1 | 2 | a | 0 | ... | +| chr1 | 1 | 2 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 9 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 1 2 - 1 +1 chr1 1 2 - 1 +2 chr1 1 2 - 1 +3 chr1 1 2 - 1 +4 chr1 1 2 - 1 +5 chr1 1 2 - 1 +6 chr1 1 2 - 1 +7 chr1 1 2 - 1 +8 chr1 1 2 - 1 +df2 + Chromosome Start End Strand Distance +0 chr1 1 2 - 1 +1 chr1 1 2 - 1 +2 chr1 1 2 - 1 +3 chr1 1 2 - 1 +4 chr1 1 2 - 1 +5 chr1 1 2 - 1 +6 chr1 1 2 - 1 +7 chr1 1 2 - 1 +8 chr1 1 2 - 1 +Actual + Chromosome Start End Strand Distance +0 chr1 1 2 - 1 +1 chr1 1 2 - 1 +2 chr1 1 2 - 1 +3 chr1 1 2 - 1 +4 chr1 1 2 - 1 +5 chr1 1 2 - 1 +6 chr1 1 2 - 1 +7 chr1 1 2 - 1 +8 chr1 1 2 - 1 + +Expected + Chromosome Start End Strand Distance +0 chr1 1 2 - 1 +1 chr1 1 2 - 1 +2 chr1 1 2 - 1 +3 chr1 1 2 - 1 +4 chr1 1 2 - 1 +5 chr1 1 2 - 1 +6 chr1 1 2 - 1 +7 chr1 1 2 - 1 +8 chr1 1 2 - 1 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=9, step=1) +Expected index +RangeIndex(start=0, stop=9, step=1) +index equal [ True True True True True True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp4i24j2ba/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp4i24j2ba/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 1 2 - 1 +1 chr1 1 2 - 1 +2 chr1 1 2 - 1 +3 chr1 1 2 - 1 +4 chr1 1 2 - 1 +5 chr1 1 2 - 1 +6 chr1 1 2 - 1 +7 chr1 1 2 - 1 +8 chr1 1 2 - 1 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 1 | 2 | a | 0 | ... | +| chr1 | 1 | 2 | a | 0 | ... | +| chr1 | 1 | 2 | a | 0 | ... | +| chr1 | 1 | 2 | a | 0 | ... | +| ... | ... | ... | ... | ... | ... | +| chr1 | 1 | 2 | a | 0 | ... | +| chr1 | 1 | 2 | a | 0 | ... | +| chr1 | 1 | 2 | a | 0 | ... | +| chr1 | 1 | 2 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 9 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 1 2 - 1 +1 chr1 1 2 - 1 +2 chr1 1 2 - 1 +3 chr1 1 2 - 1 +4 chr1 1 2 - 1 +5 chr1 1 2 - 1 +6 chr1 1 2 - 1 +7 chr1 1 2 - 1 +8 chr1 1 2 - 1 +df2 + Chromosome Start End Strand Distance +0 chr1 1 2 - 1 +1 chr1 1 2 - 1 +2 chr1 1 2 - 1 +3 chr1 1 2 - 1 +4 chr1 1 2 - 1 +5 chr1 1 2 - 1 +6 chr1 1 2 - 1 +7 chr1 1 2 - 1 +8 chr1 1 2 - 1 +Actual + Chromosome Start End Strand Distance +0 chr1 1 2 - 1 +1 chr1 1 2 - 1 +2 chr1 1 2 - 1 +3 chr1 1 2 - 1 +4 chr1 1 2 - 1 +5 chr1 1 2 - 1 +6 chr1 1 2 - 1 +7 chr1 1 2 - 1 +8 chr1 1 2 - 1 + +Expected + Chromosome Start End Strand Distance +0 chr1 1 2 - 1 +1 chr1 1 2 - 1 +2 chr1 1 2 - 1 +3 chr1 1 2 - 1 +4 chr1 1 2 - 1 +5 chr1 1 2 - 1 +6 chr1 1 2 - 1 +7 chr1 1 2 - 1 +8 chr1 1 2 - 1 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=9, step=1) +Expected index +RangeIndex(start=0, stop=9, step=1) +index equal [ True True True True True True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpoliivkf2/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpoliivkf2/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpco4w9cum/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpco4w9cum/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpyk7dxh9y/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpyk7dxh9y/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr10 714337 723984 + 5620464 +1 chr10 714337 723984 + 5783522 +2 chr10 3140421 3142752 + 3201696 +3 chr10 3140421 3142752 + 3364754 +4 chr10 6344447 6346497 - 1031038 +5 chr10 6344447 6346497 - 3201696 +6 chr10 6507505 6515233 - 862302 +7 chr10 6507505 6515233 - 3128893 +8 chr10 7377534 7387514 + 239347 +9 chr10 7377534 7387514 + 862302 +10 chr10 7626860 7631996 - 239347 +11 chr10 7626860 7631996 - 2012130 +12 chr10 9644125 9653772 + 2012130 +13 chr10 9644125 9653772 + 3128893 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr10 | 9644125 | 9653772 | a | 0 | ... | +| chr10 | 9644125 | 9653772 | a | 0 | ... | +| chr10 | 3140421 | 3142752 | a | 0 | ... | +| chr10 | 3140421 | 3142752 | a | 0 | ... | +| ... | ... | ... | ... | ... | ... | +| chr10 | 6507505 | 6515233 | a | 0 | ... | +| chr10 | 6507505 | 6515233 | a | 0 | ... | +| chr10 | 7626860 | 7631996 | a | 0 | ... | +| chr10 | 7626860 | 7631996 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 14 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +4 chr10 714337 723984 + 5620464 +5 chr10 714337 723984 + 5783522 +2 chr10 3140421 3142752 + 3201696 +3 chr10 3140421 3142752 + 3364754 +8 chr10 6344447 6346497 - 1031038 +9 chr10 6344447 6346497 - 3201696 +10 chr10 6507505 6515233 - 862302 +11 chr10 6507505 6515233 - 3128893 +6 chr10 7377534 7387514 + 239347 +7 chr10 7377534 7387514 + 862302 +12 chr10 7626860 7631996 - 239347 +13 chr10 7626860 7631996 - 2012130 +0 chr10 9644125 9653772 + 2012130 +1 chr10 9644125 9653772 + 3128893 +df2 + Chromosome Start End Strand Distance +0 chr10 714337 723984 + 5620464 +1 chr10 714337 723984 + 5783522 +2 chr10 3140421 3142752 + 3201696 +3 chr10 3140421 3142752 + 3364754 +4 chr10 6344447 6346497 - 1031038 +5 chr10 6344447 6346497 - 3201696 +6 chr10 6507505 6515233 - 862302 +7 chr10 6507505 6515233 - 3128893 +8 chr10 7377534 7387514 + 239347 +9 chr10 7377534 7387514 + 862302 +10 chr10 7626860 7631996 - 239347 +11 chr10 7626860 7631996 - 2012130 +12 chr10 9644125 9653772 + 2012130 +13 chr10 9644125 9653772 + 3128893 +Actual + Chromosome Start End Strand Distance +0 chr10 714337 723984 + 5620464 +1 chr10 714337 723984 + 5783522 +2 chr10 3140421 3142752 + 3201696 +3 chr10 3140421 3142752 + 3364754 +4 chr10 6344447 6346497 - 1031038 +5 chr10 6344447 6346497 - 3201696 +6 chr10 6507505 6515233 - 862302 +7 chr10 6507505 6515233 - 3128893 +8 chr10 7377534 7387514 + 239347 +9 chr10 7377534 7387514 + 862302 +10 chr10 7626860 7631996 - 239347 +11 chr10 7626860 7631996 - 2012130 +12 chr10 9644125 9653772 + 2012130 +13 chr10 9644125 9653772 + 3128893 + +Expected + Chromosome Start End Strand Distance +0 chr10 714337 723984 + 5620464 +1 chr10 714337 723984 + 5783522 +2 chr10 3140421 3142752 + 3201696 +3 chr10 3140421 3142752 + 3364754 +4 chr10 6344447 6346497 - 1031038 +5 chr10 6344447 6346497 - 3201696 +6 chr10 6507505 6515233 - 862302 +7 chr10 6507505 6515233 - 3128893 +8 chr10 7377534 7387514 + 239347 +9 chr10 7377534 7387514 + 862302 +10 chr10 7626860 7631996 - 239347 +11 chr10 7626860 7631996 - 2012130 +12 chr10 9644125 9653772 + 2012130 +13 chr10 9644125 9653772 + 3128893 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=14, step=1) +Expected index +RangeIndex(start=0, stop=14, step=1) +index equal [ True True True True True True True True True True True True + True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp2v432_tx/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp2v432_tx/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr10 714337 723984 + 5620464 +1 chr10 714337 723984 + 5783522 +2 chr10 3140421 3142752 + 3201696 +3 chr10 3140421 3142752 + 3364754 +4 chr10 6344447 6346497 - 1031038 +5 chr10 6344447 6346497 - 3201696 +6 chr10 6507505 6515233 - 862302 +7 chr10 6507505 6515233 - 3128893 +8 chr10 7377534 7387514 + 239347 +9 chr10 7377534 7387514 + 870029 +10 chr10 7626860 7631996 - 239347 +11 chr10 7626860 7631996 - 2012130 +12 chr10 9644125 9653772 + 2012130 +13 chr10 9644125 9653772 + 3136620 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr10 | 9644125 | 9653772 | a | 0 | ... | +| chr10 | 9644125 | 9653772 | a | 0 | ... | +| chr10 | 3140421 | 3142752 | a | 0 | ... | +| chr10 | 3140421 | 3142752 | a | 0 | ... | +| ... | ... | ... | ... | ... | ... | +| chr10 | 6507505 | 6515233 | a | 0 | ... | +| chr10 | 6507505 | 6515233 | a | 0 | ... | +| chr10 | 7626860 | 7631996 | a | 0 | ... | +| chr10 | 7626860 | 7631996 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 14 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +4 chr10 714337 723984 + 5620464 +5 chr10 714337 723984 + 5783522 +2 chr10 3140421 3142752 + 3201696 +3 chr10 3140421 3142752 + 3364754 +8 chr10 6344447 6346497 - 1031038 +9 chr10 6344447 6346497 - 3201696 +10 chr10 6507505 6515233 - 862302 +11 chr10 6507505 6515233 - 3128893 +6 chr10 7377534 7387514 + 239347 +7 chr10 7377534 7387514 + 870029 +12 chr10 7626860 7631996 - 239347 +13 chr10 7626860 7631996 - 2012130 +0 chr10 9644125 9653772 + 2012130 +1 chr10 9644125 9653772 + 3136620 +df2 + Chromosome Start End Strand Distance +0 chr10 714337 723984 + 5620464 +1 chr10 714337 723984 + 5783522 +2 chr10 3140421 3142752 + 3201696 +3 chr10 3140421 3142752 + 3364754 +4 chr10 6344447 6346497 - 1031038 +5 chr10 6344447 6346497 - 3201696 +6 chr10 6507505 6515233 - 862302 +7 chr10 6507505 6515233 - 3128893 +8 chr10 7377534 7387514 + 239347 +9 chr10 7377534 7387514 + 870029 +10 chr10 7626860 7631996 - 239347 +11 chr10 7626860 7631996 - 2012130 +12 chr10 9644125 9653772 + 2012130 +13 chr10 9644125 9653772 + 3136620 +Actual + Chromosome Start End Strand Distance +0 chr10 714337 723984 + 5620464 +1 chr10 714337 723984 + 5783522 +2 chr10 3140421 3142752 + 3201696 +3 chr10 3140421 3142752 + 3364754 +4 chr10 6344447 6346497 - 1031038 +5 chr10 6344447 6346497 - 3201696 +6 chr10 6507505 6515233 - 862302 +7 chr10 6507505 6515233 - 3128893 +8 chr10 7377534 7387514 + 239347 +9 chr10 7377534 7387514 + 870029 +10 chr10 7626860 7631996 - 239347 +11 chr10 7626860 7631996 - 2012130 +12 chr10 9644125 9653772 + 2012130 +13 chr10 9644125 9653772 + 3136620 + +Expected + Chromosome Start End Strand Distance +0 chr10 714337 723984 + 5620464 +1 chr10 714337 723984 + 5783522 +2 chr10 3140421 3142752 + 3201696 +3 chr10 3140421 3142752 + 3364754 +4 chr10 6344447 6346497 - 1031038 +5 chr10 6344447 6346497 - 3201696 +6 chr10 6507505 6515233 - 862302 +7 chr10 6507505 6515233 - 3128893 +8 chr10 7377534 7387514 + 239347 +9 chr10 7377534 7387514 + 870029 +10 chr10 7626860 7631996 - 239347 +11 chr10 7626860 7631996 - 2012130 +12 chr10 9644125 9653772 + 2012130 +13 chr10 9644125 9653772 + 3136620 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=14, step=1) +Expected index +RangeIndex(start=0, stop=14, step=1) +index equal [ True True True True True True True True True True True True + True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmppk2w2vzc/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmppk2w2vzc/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp4na1lp4c/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp4na1lp4c/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpx_gs0fpf/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpx_gs0fpf/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpwg84apy9/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpwg84apy9/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 5090602 5093132 - 643349 +1 chr1 7991456 7991871 + 1687806 +2 chr1 7991456 7994895 - 3544203 +3 chr1 8446376 8447070 - 3999123 +4 chr1 9872093 9875747 - 5424840 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 7991456 | 7991871 | a | 0 | ... | +| chr1 | 9872093 | 9875747 | a | 0 | ... | +| chr1 | 5090602 | 5093132 | a | 0 | ... | +| chr1 | 8446376 | 8447070 | a | 0 | ... | +| chr1 | 7991456 | 7994895 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 5 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +2 chr1 5090602 5093132 - 643349 +0 chr1 7991456 7991871 + 1687806 +4 chr1 7991456 7994895 - 3544203 +3 chr1 8446376 8447070 - 3999123 +1 chr1 9872093 9875747 - 5424840 +df2 + Chromosome Start End Strand Distance +0 chr1 5090602 5093132 - 643349 +1 chr1 7991456 7991871 + 1687806 +2 chr1 7991456 7994895 - 3544203 +3 chr1 8446376 8447070 - 3999123 +4 chr1 9872093 9875747 - 5424840 +Actual + Chromosome Start End Strand Distance +0 chr1 5090602 5093132 - 643349 +1 chr1 7991456 7991871 + 1687806 +2 chr1 7991456 7994895 - 3544203 +3 chr1 8446376 8447070 - 3999123 +4 chr1 9872093 9875747 - 5424840 + +Expected + Chromosome Start End Strand Distance +0 chr1 5090602 5093132 - 643349 +1 chr1 7991456 7991871 + 1687806 +2 chr1 7991456 7994895 - 3544203 +3 chr1 8446376 8447070 - 3999123 +4 chr1 9872093 9875747 - 5424840 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=5, step=1) +Expected index +RangeIndex(start=0, stop=5, step=1) +index equal [ True True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp1sahvobq/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp1sahvobq/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 5090602 5093132 - 2898325 +1 chr1 7991456 7991871 + 454506 +2 chr1 7991456 7991871 + 1880223 +4 chr1 8446376 8447070 - 454506 +5 chr1 9872093 9875747 - 1880223 +10 chrM 3884205 3890997 + 2232981 +11 chrM 6123977 6133976 - 2232981 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 7991456 | 7991871 | a | 0 | ... | +| chr1 | 7991456 | 7991871 | a | 0 | ... | +| chr1 | 9872093 | 9875747 | a | 0 | ... | +| chr1 | 5090602 | 5093132 | a | 0 | ... | +| chr1 | 8446376 | 8447070 | a | 0 | ... | +| chrM | 3884205 | 3890997 | a | 0 | ... | +| chrM | 6123977 | 6133976 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 7 rows and 12 columns from 2 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +5 chrM 3884205 3890997 + 2232981 +3 chr1 5090602 5093132 - 2898325 +6 chrM 6123977 6133976 - 2232981 +0 chr1 7991456 7991871 + 454506 +1 chr1 7991456 7991871 + 1880223 +4 chr1 8446376 8447070 - 454506 +2 chr1 9872093 9875747 - 1880223 +df2 + Chromosome Start End Strand Distance +10 chrM 3884205 3890997 + 2232981 +0 chr1 5090602 5093132 - 2898325 +11 chrM 6123977 6133976 - 2232981 +1 chr1 7991456 7991871 + 454506 +2 chr1 7991456 7991871 + 1880223 +4 chr1 8446376 8447070 - 454506 +5 chr1 9872093 9875747 - 1880223 +Actual + Chromosome Start End Strand Distance +0 chr1 5090602 5093132 - 2898325 +1 chr1 7991456 7991871 + 454506 +2 chr1 7991456 7991871 + 1880223 +3 chr1 8446376 8447070 - 454506 +4 chr1 9872093 9875747 - 1880223 +5 chrM 3884205 3890997 + 2232981 +6 chrM 6123977 6133976 - 2232981 + +Expected + Chromosome Start End Strand Distance +0 chr1 5090602 5093132 - 2898325 +1 chr1 7991456 7991871 + 454506 +2 chr1 7991456 7991871 + 1880223 +3 chr1 8446376 8447070 - 454506 +4 chr1 9872093 9875747 - 1880223 +5 chrM 3884205 3890997 + 2232981 +6 chrM 6123977 6133976 - 2232981 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=7, step=1) +Expected index +RangeIndex(start=0, stop=7, step=1) +index equal [ True True True True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp1n0aqndi/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp1n0aqndi/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 1 2531 - 7988926 +1 chr1 1 3440 - 7988017 +2 chr1 1 3655 - 7987802 +3 chr1 1 416 + 5090187 +4 chr1 1 416 + 7991041 +5 chr1 1 695 - 7990762 +10 chrM 1 10000 - 3874206 +11 chrM 1 6793 + 6117185 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 1 | 416 | a | 0 | ... | +| chr1 | 1 | 416 | a | 0 | ... | +| chr1 | 1 | 3655 | a | 0 | ... | +| chr1 | 1 | 2531 | a | 0 | ... | +| chr1 | 1 | 695 | a | 0 | ... | +| chr1 | 1 | 3440 | a | 0 | ... | +| chrM | 1 | 6793 | a | 0 | ... | +| chrM | 1 | 10000 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 8 rows and 12 columns from 2 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 1 416 + 5090187 +1 chr1 1 416 + 7991041 +4 chr1 1 695 - 7990762 +3 chr1 1 2531 - 7988926 +5 chr1 1 3440 - 7988017 +2 chr1 1 3655 - 7987802 +6 chrM 1 6793 + 6117185 +7 chrM 1 10000 - 3874206 +df2 + Chromosome Start End Strand Distance +3 chr1 1 416 + 5090187 +4 chr1 1 416 + 7991041 +5 chr1 1 695 - 7990762 +0 chr1 1 2531 - 7988926 +1 chr1 1 3440 - 7988017 +2 chr1 1 3655 - 7987802 +11 chrM 1 6793 + 6117185 +10 chrM 1 10000 - 3874206 +Actual + Chromosome Start End Strand Distance +0 chr1 1 416 + 5090187 +1 chr1 1 416 + 7991041 +2 chr1 1 695 - 7990762 +3 chr1 1 2531 - 7988926 +4 chr1 1 3440 - 7988017 +5 chr1 1 3655 - 7987802 +6 chrM 1 6793 + 6117185 +7 chrM 1 10000 - 3874206 + +Expected + Chromosome Start End Strand Distance +0 chr1 1 416 + 5090187 +1 chr1 1 416 + 7991041 +2 chr1 1 695 - 7990762 +3 chr1 1 2531 - 7988926 +4 chr1 1 3440 - 7988017 +5 chr1 1 3655 - 7987802 +6 chrM 1 6793 + 6117185 +7 chrM 1 10000 - 3874206 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=8, step=1) +Expected index +RangeIndex(start=0, stop=8, step=1) +index equal [ True True True True True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpmlyh9y41/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpmlyh9y41/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 5090602 5093132 - 2898325 +1 chr1 7991456 7991871 + 454506 +2 chr1 7991456 7991871 + 1880223 +4 chr1 8446376 8447070 - 454506 +5 chr1 9872093 9875747 - 1880223 +10 chrM 3884205 3890997 + 2232981 +11 chrM 6123977 6133976 - 2232981 +12 chrM 6123977 6133976 - 3866024 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 7991456 | 7991871 | a | 0 | ... | +| chr1 | 7991456 | 7991871 | a | 0 | ... | +| chr1 | 9872093 | 9875747 | a | 0 | ... | +| chr1 | 5090602 | 5093132 | a | 0 | ... | +| chr1 | 8446376 | 8447070 | a | 0 | ... | +| chrM | 3884205 | 3890997 | a | 0 | ... | +| chrM | 6123977 | 6133976 | a | 0 | ... | +| chrM | 6123977 | 6133976 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 8 rows and 12 columns from 2 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +5 chrM 3884205 3890997 + 2232981 +3 chr1 5090602 5093132 - 2898325 +6 chrM 6123977 6133976 - 2232981 +7 chrM 6123977 6133976 - 3866024 +0 chr1 7991456 7991871 + 454506 +1 chr1 7991456 7991871 + 1880223 +4 chr1 8446376 8447070 - 454506 +2 chr1 9872093 9875747 - 1880223 +df2 + Chromosome Start End Strand Distance +10 chrM 3884205 3890997 + 2232981 +0 chr1 5090602 5093132 - 2898325 +11 chrM 6123977 6133976 - 2232981 +12 chrM 6123977 6133976 - 3866024 +1 chr1 7991456 7991871 + 454506 +2 chr1 7991456 7991871 + 1880223 +4 chr1 8446376 8447070 - 454506 +5 chr1 9872093 9875747 - 1880223 +Actual + Chromosome Start End Strand Distance +0 chr1 5090602 5093132 - 2898325 +1 chr1 7991456 7991871 + 454506 +2 chr1 7991456 7991871 + 1880223 +3 chr1 8446376 8447070 - 454506 +4 chr1 9872093 9875747 - 1880223 +5 chrM 3884205 3890997 + 2232981 +6 chrM 6123977 6133976 - 2232981 +7 chrM 6123977 6133976 - 3866024 + +Expected + Chromosome Start End Strand Distance +0 chr1 5090602 5093132 - 2898325 +1 chr1 7991456 7991871 + 454506 +2 chr1 7991456 7991871 + 1880223 +3 chr1 8446376 8447070 - 454506 +4 chr1 9872093 9875747 - 1880223 +5 chrM 3884205 3890997 + 2232981 +6 chrM 6123977 6133976 - 2232981 +7 chrM 6123977 6133976 - 3866024 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=8, step=1) +Expected index +RangeIndex(start=0, stop=8, step=1) +index equal [ True True True True True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmplhqk33v5/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmplhqk33v5/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpqxwbsd9z/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpqxwbsd9z/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpk24pya50/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpk24pya50/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpeepth_ug/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpeepth_ug/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 4955850 4961958 - 696141 +1 chr1 4955850 4961958 - 3053548 +4 chrM 9341593 9346791 + 4248059 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 4955850 | 4961958 | a | 0 | ... | +| chr1 | 4955850 | 4961958 | a | 0 | ... | +| chrM | 9341593 | 9346791 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 3 rows and 12 columns from 2 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 4955850 4961958 - 696141 +1 chr1 4955850 4961958 - 3053548 +2 chrM 9341593 9346791 + 4248059 +df2 + Chromosome Start End Strand Distance +0 chr1 4955850 4961958 - 696141 +1 chr1 4955850 4961958 - 3053548 +4 chrM 9341593 9346791 + 4248059 +Actual + Chromosome Start End Strand Distance +0 chr1 4955850 4961958 - 696141 +1 chr1 4955850 4961958 - 3053548 +2 chrM 9341593 9346791 + 4248059 + +Expected + Chromosome Start End Strand Distance +0 chr1 4955850 4961958 - 696141 +1 chr1 4955850 4961958 - 3053548 +2 chrM 9341593 9346791 + 4248059 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=3, step=1) +Expected index +RangeIndex(start=0, stop=3, step=1) +index equal [ True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp12iwljts/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp12iwljts/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 4955850 4961958 - 696141 +1 chr1 4955850 4961958 - 3053548 +4 chrM 9341593 9346791 + 4248059 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 4955850 | 4961958 | a | 0 | ... | +| chr1 | 4955850 | 4961958 | a | 0 | ... | +| chrM | 9341593 | 9346791 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 3 rows and 12 columns from 2 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 4955850 4961958 - 696141 +1 chr1 4955850 4961958 - 3053548 +2 chrM 9341593 9346791 + 4248059 +df2 + Chromosome Start End Strand Distance +0 chr1 4955850 4961958 - 696141 +1 chr1 4955850 4961958 - 3053548 +4 chrM 9341593 9346791 + 4248059 +Actual + Chromosome Start End Strand Distance +0 chr1 4955850 4961958 - 696141 +1 chr1 4955850 4961958 - 3053548 +2 chrM 9341593 9346791 + 4248059 + +Expected + Chromosome Start End Strand Distance +0 chr1 4955850 4961958 - 696141 +1 chr1 4955850 4961958 - 3053548 +2 chrM 9341593 9346791 + 4248059 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=3, step=1) +Expected index +RangeIndex(start=0, stop=3, step=1) +index equal [ True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpob9wkjv4/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpob9wkjv4/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 4955850 4961958 - 696141 +1 chr1 4955850 4961958 - 3053548 +4 chrM 9341593 9346791 + 4248059 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 4955850 | 4961958 | a | 0 | ... | +| chr1 | 4955850 | 4961958 | a | 0 | ... | +| chrM | 9341593 | 9346791 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 3 rows and 12 columns from 2 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 4955850 4961958 - 696141 +1 chr1 4955850 4961958 - 3053548 +2 chrM 9341593 9346791 + 4248059 +df2 + Chromosome Start End Strand Distance +0 chr1 4955850 4961958 - 696141 +1 chr1 4955850 4961958 - 3053548 +4 chrM 9341593 9346791 + 4248059 +Actual + Chromosome Start End Strand Distance +0 chr1 4955850 4961958 - 696141 +1 chr1 4955850 4961958 - 3053548 +2 chrM 9341593 9346791 + 4248059 + +Expected + Chromosome Start End Strand Distance +0 chr1 4955850 4961958 - 696141 +1 chr1 4955850 4961958 - 3053548 +2 chrM 9341593 9346791 + 4248059 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=3, step=1) +Expected index +RangeIndex(start=0, stop=3, step=1) +index equal [ True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmprycq_keo/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmprycq_keo/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpf_qm25qr/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpf_qm25qr/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpf3jzy1e2/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpf3jzy1e2/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpyedmhwc1/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpyedmhwc1/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpxmf1uecs/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpxmf1uecs/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 2778494 2778496 + 2275327 +1 chr1 2778494 2778496 + 3598763 +2 chr1 7415951 7418925 + 85375 +3 chr1 7415951 7418925 + 878958 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 7415951 | 7418925 | a | 0 | ... | +| chr1 | 7415951 | 7418925 | a | 0 | ... | +| chr1 | 2778494 | 2778496 | a | 0 | ... | +| chr1 | 2778494 | 2778496 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 4 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +2 chr1 2778494 2778496 + 2275327 +3 chr1 2778494 2778496 + 3598763 +0 chr1 7415951 7418925 + 85375 +1 chr1 7415951 7418925 + 878958 +df2 + Chromosome Start End Strand Distance +0 chr1 2778494 2778496 + 2275327 +1 chr1 2778494 2778496 + 3598763 +2 chr1 7415951 7418925 + 85375 +3 chr1 7415951 7418925 + 878958 +Actual + Chromosome Start End Strand Distance +0 chr1 2778494 2778496 + 2275327 +1 chr1 2778494 2778496 + 3598763 +2 chr1 7415951 7418925 + 85375 +3 chr1 7415951 7418925 + 878958 + +Expected + Chromosome Start End Strand Distance +0 chr1 2778494 2778496 + 2275327 +1 chr1 2778494 2778496 + 3598763 +2 chr1 7415951 7418925 + 85375 +3 chr1 7415951 7418925 + 878958 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=4, step=1) +Expected index +RangeIndex(start=0, stop=4, step=1) +index equal [ True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp_18aiy26/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp_18aiy26/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 2778494 2778496 + 2275327 +1 chr1 2778494 2778496 + 3598763 +2 chr1 7415951 7418925 + 878958 +3 chr1 7415951 7418925 + 1022276 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 7415951 | 7418925 | a | 0 | ... | +| chr1 | 7415951 | 7418925 | a | 0 | ... | +| chr1 | 2778494 | 2778496 | a | 0 | ... | +| chr1 | 2778494 | 2778496 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 4 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +2 chr1 2778494 2778496 + 2275327 +3 chr1 2778494 2778496 + 3598763 +0 chr1 7415951 7418925 + 878958 +1 chr1 7415951 7418925 + 1022276 +df2 + Chromosome Start End Strand Distance +0 chr1 2778494 2778496 + 2275327 +1 chr1 2778494 2778496 + 3598763 +2 chr1 7415951 7418925 + 878958 +3 chr1 7415951 7418925 + 1022276 +Actual + Chromosome Start End Strand Distance +0 chr1 2778494 2778496 + 2275327 +1 chr1 2778494 2778496 + 3598763 +2 chr1 7415951 7418925 + 878958 +3 chr1 7415951 7418925 + 1022276 + +Expected + Chromosome Start End Strand Distance +0 chr1 2778494 2778496 + 2275327 +1 chr1 2778494 2778496 + 3598763 +2 chr1 7415951 7418925 + 878958 +3 chr1 7415951 7418925 + 1022276 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=4, step=1) +Expected index +RangeIndex(start=0, stop=4, step=1) +index equal [ True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpc4xsvr1a/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpc4xsvr1a/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 7415951 7415952 + 7415950 +1 chr1 7415951 7415952 + 7415950 +2 chr1 7415951 7415952 + 7415950 +3 chr1 7415951 7415952 + 7415950 +4 chr1 7415951 7415952 + 7415950 +5 chr1 7415951 7415952 + 7415950 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 7415951 | 7415952 | a | 0 | ... | +| chr1 | 7415951 | 7415952 | a | 0 | ... | +| chr1 | 7415951 | 7415952 | a | 0 | ... | +| chr1 | 7415951 | 7415952 | a | 0 | ... | +| chr1 | 7415951 | 7415952 | a | 0 | ... | +| chr1 | 7415951 | 7415952 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 6 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 7415951 7415952 + 7415950 +1 chr1 7415951 7415952 + 7415950 +2 chr1 7415951 7415952 + 7415950 +3 chr1 7415951 7415952 + 7415950 +4 chr1 7415951 7415952 + 7415950 +5 chr1 7415951 7415952 + 7415950 +df2 + Chromosome Start End Strand Distance +0 chr1 7415951 7415952 + 7415950 +1 chr1 7415951 7415952 + 7415950 +2 chr1 7415951 7415952 + 7415950 +3 chr1 7415951 7415952 + 7415950 +4 chr1 7415951 7415952 + 7415950 +5 chr1 7415951 7415952 + 7415950 +Actual + Chromosome Start End Strand Distance +0 chr1 7415951 7415952 + 7415950 +1 chr1 7415951 7415952 + 7415950 +2 chr1 7415951 7415952 + 7415950 +3 chr1 7415951 7415952 + 7415950 +4 chr1 7415951 7415952 + 7415950 +5 chr1 7415951 7415952 + 7415950 + +Expected + Chromosome Start End Strand Distance +0 chr1 7415951 7415952 + 7415950 +1 chr1 7415951 7415952 + 7415950 +2 chr1 7415951 7415952 + 7415950 +3 chr1 7415951 7415952 + 7415950 +4 chr1 7415951 7415952 + 7415950 +5 chr1 7415951 7415952 + 7415950 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=6, step=1) +Expected index +RangeIndex(start=0, stop=6, step=1) +index equal [ True True True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpaifhiyzx/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpaifhiyzx/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp0hhy3cyg/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp0hhy3cyg/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpmw7g95nd/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpmw7g95nd/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 824905 830604 - 6760352 +1 chr1 7236746 7237858 + 1586926 +2 chr1 7236746 7237858 + 7236744 +3 chr1 8242207 8251332 - 651010 +4 chr1 8351252 8359289 - 760055 +5 chr1 8617380 8625461 + 2967560 +6 chr1 8617380 8625461 + 8617378 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 7236746 | 7237858 | a | 0 | ... | +| chr1 | 7236746 | 7237858 | a | 0 | ... | +| chr1 | 8617380 | 8625461 | a | 0 | ... | +| chr1 | 8617380 | 8625461 | a | 0 | ... | +| chr1 | 824905 | 830604 | a | 0 | ... | +| chr1 | 8351252 | 8359289 | a | 0 | ... | +| chr1 | 8242207 | 8251332 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 7 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +4 chr1 824905 830604 - 6760352 +0 chr1 7236746 7237858 + 1586926 +1 chr1 7236746 7237858 + 7236744 +6 chr1 8242207 8251332 - 651010 +5 chr1 8351252 8359289 - 760055 +2 chr1 8617380 8625461 + 2967560 +3 chr1 8617380 8625461 + 8617378 +df2 + Chromosome Start End Strand Distance +0 chr1 824905 830604 - 6760352 +1 chr1 7236746 7237858 + 1586926 +2 chr1 7236746 7237858 + 7236744 +3 chr1 8242207 8251332 - 651010 +4 chr1 8351252 8359289 - 760055 +5 chr1 8617380 8625461 + 2967560 +6 chr1 8617380 8625461 + 8617378 +Actual + Chromosome Start End Strand Distance +0 chr1 824905 830604 - 6760352 +1 chr1 7236746 7237858 + 1586926 +2 chr1 7236746 7237858 + 7236744 +3 chr1 8242207 8251332 - 651010 +4 chr1 8351252 8359289 - 760055 +5 chr1 8617380 8625461 + 2967560 +6 chr1 8617380 8625461 + 8617378 + +Expected + Chromosome Start End Strand Distance +0 chr1 824905 830604 - 6760352 +1 chr1 7236746 7237858 + 1586926 +2 chr1 7236746 7237858 + 7236744 +3 chr1 8242207 8251332 - 651010 +4 chr1 8351252 8359289 - 760055 +5 chr1 8617380 8625461 + 2967560 +6 chr1 8617380 8625461 + 8617378 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=7, step=1) +Expected index +RangeIndex(start=0, stop=7, step=1) +index equal [ True True True True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpflfsmkm5/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpflfsmkm5/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 824905 830604 - 824903 +1 chr1 824905 830604 - 4810267 +3 chr1 8242207 8251332 - 651010 +4 chr1 8242207 8251332 - 2592387 +5 chr1 8351252 8359289 - 760055 +6 chr1 8351252 8359289 - 2701432 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 824905 | 830604 | a | 0 | ... | +| chr1 | 824905 | 830604 | a | 0 | ... | +| chr1 | 8351252 | 8359289 | a | 0 | ... | +| chr1 | 8351252 | 8359289 | a | 0 | ... | +| chr1 | 8242207 | 8251332 | a | 0 | ... | +| chr1 | 8242207 | 8251332 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 6 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 824905 830604 - 824903 +1 chr1 824905 830604 - 4810267 +4 chr1 8242207 8251332 - 651010 +5 chr1 8242207 8251332 - 2592387 +2 chr1 8351252 8359289 - 760055 +3 chr1 8351252 8359289 - 2701432 +df2 + Chromosome Start End Strand Distance +0 chr1 824905 830604 - 824903 +1 chr1 824905 830604 - 4810267 +3 chr1 8242207 8251332 - 651010 +4 chr1 8242207 8251332 - 2592387 +5 chr1 8351252 8359289 - 760055 +6 chr1 8351252 8359289 - 2701432 +Actual + Chromosome Start End Strand Distance +0 chr1 824905 830604 - 824903 +1 chr1 824905 830604 - 4810267 +2 chr1 8242207 8251332 - 651010 +3 chr1 8242207 8251332 - 2592387 +4 chr1 8351252 8359289 - 760055 +5 chr1 8351252 8359289 - 2701432 + +Expected + Chromosome Start End Strand Distance +0 chr1 824905 830604 - 824903 +1 chr1 824905 830604 - 4810267 +2 chr1 8242207 8251332 - 651010 +3 chr1 8242207 8251332 - 2592387 +4 chr1 8351252 8359289 - 760055 +5 chr1 8351252 8359289 - 2701432 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=6, step=1) +Expected index +RangeIndex(start=0, stop=6, step=1) +index equal [ True True True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp4akmlk6j/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp4akmlk6j/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpmo3srtg5/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpmo3srtg5/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpp6f4dof8/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpp6f4dof8/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpgpitc6o1/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpgpitc6o1/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpybupx1yc/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpybupx1yc/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 1736924 1740508 - 5623444 +1 chr1 1736924 1740508 - 6703768 +2 chr1 2052327 2060996 + 3377943 +3 chr1 2052327 2060996 + 6383280 +4 chr1 9678835 9686666 + 1231356 +5 chr1 9678835 9686666 + 4229934 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 2052327 | 2060996 | a | 0 | ... | +| chr1 | 2052327 | 2060996 | a | 0 | ... | +| chr1 | 9678835 | 9686666 | a | 0 | ... | +| chr1 | 9678835 | 9686666 | a | 0 | ... | +| chr1 | 1736924 | 1740508 | a | 0 | ... | +| chr1 | 1736924 | 1740508 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 6 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +4 chr1 1736924 1740508 - 5623444 +5 chr1 1736924 1740508 - 6703768 +0 chr1 2052327 2060996 + 3377943 +1 chr1 2052327 2060996 + 6383280 +2 chr1 9678835 9686666 + 1231356 +3 chr1 9678835 9686666 + 4229934 +df2 + Chromosome Start End Strand Distance +0 chr1 1736924 1740508 - 5623444 +1 chr1 1736924 1740508 - 6703768 +2 chr1 2052327 2060996 + 3377943 +3 chr1 2052327 2060996 + 6383280 +4 chr1 9678835 9686666 + 1231356 +5 chr1 9678835 9686666 + 4229934 +Actual + Chromosome Start End Strand Distance +0 chr1 1736924 1740508 - 5623444 +1 chr1 1736924 1740508 - 6703768 +2 chr1 2052327 2060996 + 3377943 +3 chr1 2052327 2060996 + 6383280 +4 chr1 9678835 9686666 + 1231356 +5 chr1 9678835 9686666 + 4229934 + +Expected + Chromosome Start End Strand Distance +0 chr1 1736924 1740508 - 5623444 +1 chr1 1736924 1740508 - 6703768 +2 chr1 2052327 2060996 + 3377943 +3 chr1 2052327 2060996 + 6383280 +4 chr1 9678835 9686666 + 1231356 +5 chr1 9678835 9686666 + 4229934 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=6, step=1) +Expected index +RangeIndex(start=0, stop=6, step=1) +index equal [ True True True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpk6d2trb1/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpk6d2trb1/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 1736924 1740508 - 311820 +1 chr1 1736924 1740508 - 7938328 +2 chr1 2052327 2060996 + 311820 +3 chr1 9678835 9686666 + 7938328 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 2052327 | 2060996 | a | 0 | ... | +| chr1 | 9678835 | 9686666 | a | 0 | ... | +| chr1 | 1736924 | 1740508 | a | 0 | ... | +| chr1 | 1736924 | 1740508 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 4 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +2 chr1 1736924 1740508 - 311820 +3 chr1 1736924 1740508 - 7938328 +0 chr1 2052327 2060996 + 311820 +1 chr1 9678835 9686666 + 7938328 +df2 + Chromosome Start End Strand Distance +0 chr1 1736924 1740508 - 311820 +1 chr1 1736924 1740508 - 7938328 +2 chr1 2052327 2060996 + 311820 +3 chr1 9678835 9686666 + 7938328 +Actual + Chromosome Start End Strand Distance +0 chr1 1736924 1740508 - 311820 +1 chr1 1736924 1740508 - 7938328 +2 chr1 2052327 2060996 + 311820 +3 chr1 9678835 9686666 + 7938328 + +Expected + Chromosome Start End Strand Distance +0 chr1 1736924 1740508 - 311820 +1 chr1 1736924 1740508 - 7938328 +2 chr1 2052327 2060996 + 311820 +3 chr1 9678835 9686666 + 7938328 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=4, step=1) +Expected index +RangeIndex(start=0, stop=4, step=1) +index equal [ True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp3ygaqwqu/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp3ygaqwqu/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmppatgjw8g/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmppatgjw8g/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpah37azgv/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpah37azgv/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp2betvbbz/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp2betvbbz/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp6ss44wk1/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp6ss44wk1/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 9815380 9822919 + 634569 +1 chr1 9815380 9822919 + 1322756 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 9815380 | 9822919 | a | 0 | ... | +| chr1 | 9815380 | 9822919 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 9815380 9822919 + 634569 +1 chr1 9815380 9822919 + 1322756 +df2 + Chromosome Start End Strand Distance +0 chr1 9815380 9822919 + 634569 +1 chr1 9815380 9822919 + 1322756 +Actual + Chromosome Start End Strand Distance +0 chr1 9815380 9822919 + 634569 +1 chr1 9815380 9822919 + 1322756 + +Expected + Chromosome Start End Strand Distance +0 chr1 9815380 9822919 + 634569 +1 chr1 9815380 9822919 + 1322756 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=2, step=1) +Expected index +RangeIndex(start=0, stop=2, step=1) +index equal [ True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpb1s6tbvf/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpb1s6tbvf/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 9815380 9822919 + 634569 +1 chr1 9815380 9822919 + 1322756 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 9815380 | 9822919 | a | 0 | ... | +| chr1 | 9815380 | 9822919 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 9815380 9822919 + 634569 +1 chr1 9815380 9822919 + 1322756 +df2 + Chromosome Start End Strand Distance +0 chr1 9815380 9822919 + 634569 +1 chr1 9815380 9822919 + 1322756 +Actual + Chromosome Start End Strand Distance +0 chr1 9815380 9822919 + 634569 +1 chr1 9815380 9822919 + 1322756 + +Expected + Chromosome Start End Strand Distance +0 chr1 9815380 9822919 + 634569 +1 chr1 9815380 9822919 + 1322756 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=2, step=1) +Expected index +RangeIndex(start=0, stop=2, step=1) +index equal [ True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp56nysxvk/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp56nysxvk/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 9815380 9822919 + 9806360 +1 chr1 9815380 9822919 + 9809618 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 9815380 | 9822919 | a | 0 | ... | +| chr1 | 9815380 | 9822919 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 9815380 9822919 + 9806360 +1 chr1 9815380 9822919 + 9809618 +df2 + Chromosome Start End Strand Distance +0 chr1 9815380 9822919 + 9806360 +1 chr1 9815380 9822919 + 9809618 +Actual + Chromosome Start End Strand Distance +0 chr1 9815380 9822919 + 9806360 +1 chr1 9815380 9822919 + 9809618 + +Expected + Chromosome Start End Strand Distance +0 chr1 9815380 9822919 + 9806360 +1 chr1 9815380 9822919 + 9809618 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=2, step=1) +Expected index +RangeIndex(start=0, stop=2, step=1) +index equal [ True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpnrcf5s1u/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpnrcf5s1u/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 9815380 9822919 + 9815379 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 9815380 | 9822919 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 9815380 9822919 + 9815379 +df2 + Chromosome Start End Strand Distance +0 chr1 9815380 9822919 + 9815379 +Actual + Chromosome Start End Strand Distance +0 chr1 9815380 9822919 + 9815379 + +Expected + Chromosome Start End Strand Distance +0 chr1 9815380 9822919 + 9815379 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=1, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +index equal [ True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpb7dmptth/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpb7dmptth/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 9815380 9822919 + 9815379 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 9815380 | 9822919 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 9815380 9822919 + 9815379 +df2 + Chromosome Start End Strand Distance +0 chr1 9815380 9822919 + 9815379 +Actual + Chromosome Start End Strand Distance +0 chr1 9815380 9822919 + 9815379 + +Expected + Chromosome Start End Strand Distance +0 chr1 9815380 9822919 + 9815379 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=1, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +index equal [ True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpl1gf0ug0/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpl1gf0ug0/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmprap0_osb/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmprap0_osb/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpo2yxto3q/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpo2yxto3q/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 904050 913092 - 1287398 +1 chr1 904050 913092 - 3473925 +2 chr1 3165216 3172060 - 959280 +3 chr1 3165216 3172060 - 1214957 +4 chr1 5612708 5615449 - 1220245 +5 chr1 5612708 5615449 - 1295104 +6 chr1 8245863 8254905 - 1329864 +7 chr1 8245863 8254905 - 3853400 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 904050 | 913092 | a | 0 | ... | +| chr1 | 904050 | 913092 | a | 0 | ... | +| chr1 | 8245863 | 8254905 | a | 0 | ... | +| chr1 | 8245863 | 8254905 | a | 0 | ... | +| chr1 | 3165216 | 3172060 | a | 0 | ... | +| chr1 | 3165216 | 3172060 | a | 0 | ... | +| chr1 | 5612708 | 5615449 | a | 0 | ... | +| chr1 | 5612708 | 5615449 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 8 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 904050 913092 - 1287398 +1 chr1 904050 913092 - 3473925 +4 chr1 3165216 3172060 - 959280 +5 chr1 3165216 3172060 - 1214957 +6 chr1 5612708 5615449 - 1220245 +7 chr1 5612708 5615449 - 1295104 +2 chr1 8245863 8254905 - 1329864 +3 chr1 8245863 8254905 - 3853400 +df2 + Chromosome Start End Strand Distance +0 chr1 904050 913092 - 1287398 +1 chr1 904050 913092 - 3473925 +2 chr1 3165216 3172060 - 959280 +3 chr1 3165216 3172060 - 1214957 +4 chr1 5612708 5615449 - 1220245 +5 chr1 5612708 5615449 - 1295104 +6 chr1 8245863 8254905 - 1329864 +7 chr1 8245863 8254905 - 3853400 +Actual + Chromosome Start End Strand Distance +0 chr1 904050 913092 - 1287398 +1 chr1 904050 913092 - 3473925 +2 chr1 3165216 3172060 - 959280 +3 chr1 3165216 3172060 - 1214957 +4 chr1 5612708 5615449 - 1220245 +5 chr1 5612708 5615449 - 1295104 +6 chr1 8245863 8254905 - 1329864 +7 chr1 8245863 8254905 - 3853400 + +Expected + Chromosome Start End Strand Distance +0 chr1 904050 913092 - 1287398 +1 chr1 904050 913092 - 3473925 +2 chr1 3165216 3172060 - 959280 +3 chr1 3165216 3172060 - 1214957 +4 chr1 5612708 5615449 - 1220245 +5 chr1 5612708 5615449 - 1295104 +6 chr1 8245863 8254905 - 1329864 +7 chr1 8245863 8254905 - 3853400 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=8, step=1) +Expected index +RangeIndex(start=0, stop=8, step=1) +index equal [ True True True True True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpcfl295ir/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpcfl295ir/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 904050 913092 - 904035 +1 chr1 3165216 3172060 - 3165201 +2 chr1 5612708 5615449 - 5612693 +3 chr1 8245863 8254905 - 8245848 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 904050 | 913092 | a | 0 | ... | +| chr1 | 8245863 | 8254905 | a | 0 | ... | +| chr1 | 3165216 | 3172060 | a | 0 | ... | +| chr1 | 5612708 | 5615449 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 4 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 904050 913092 - 904035 +2 chr1 3165216 3172060 - 3165201 +3 chr1 5612708 5615449 - 5612693 +1 chr1 8245863 8254905 - 8245848 +df2 + Chromosome Start End Strand Distance +0 chr1 904050 913092 - 904035 +1 chr1 3165216 3172060 - 3165201 +2 chr1 5612708 5615449 - 5612693 +3 chr1 8245863 8254905 - 8245848 +Actual + Chromosome Start End Strand Distance +0 chr1 904050 913092 - 904035 +1 chr1 3165216 3172060 - 3165201 +2 chr1 5612708 5615449 - 5612693 +3 chr1 8245863 8254905 - 8245848 + +Expected + Chromosome Start End Strand Distance +0 chr1 904050 913092 - 904035 +1 chr1 3165216 3172060 - 3165201 +2 chr1 5612708 5615449 - 5612693 +3 chr1 8245863 8254905 - 8245848 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=4, step=1) +Expected index +RangeIndex(start=0, stop=4, step=1) +index equal [ True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpuunp260w/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpuunp260w/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 904050 913092 - 904035 +1 chr1 3165216 3172060 - 3165201 +2 chr1 5612708 5615449 - 5612693 +3 chr1 8245863 8254905 + 8245862 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 8245863 | 8254905 | a | 0 | ... | +| chr1 | 904050 | 913092 | a | 0 | ... | +| chr1 | 3165216 | 3172060 | a | 0 | ... | +| chr1 | 5612708 | 5615449 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 4 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +1 chr1 904050 913092 - 904035 +2 chr1 3165216 3172060 - 3165201 +3 chr1 5612708 5615449 - 5612693 +0 chr1 8245863 8254905 + 8245862 +df2 + Chromosome Start End Strand Distance +0 chr1 904050 913092 - 904035 +1 chr1 3165216 3172060 - 3165201 +2 chr1 5612708 5615449 - 5612693 +3 chr1 8245863 8254905 + 8245862 +Actual + Chromosome Start End Strand Distance +0 chr1 904050 913092 - 904035 +1 chr1 3165216 3172060 - 3165201 +2 chr1 5612708 5615449 - 5612693 +3 chr1 8245863 8254905 + 8245862 + +Expected + Chromosome Start End Strand Distance +0 chr1 904050 913092 - 904035 +1 chr1 3165216 3172060 - 3165201 +2 chr1 5612708 5615449 - 5612693 +3 chr1 8245863 8254905 + 8245862 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=4, step=1) +Expected index +RangeIndex(start=0, stop=4, step=1) +index equal [ True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp09y267y7/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp09y267y7/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 904050 913092 - 7332772 +1 chr1 3165216 3172060 - 5073804 +2 chr1 5612708 5615449 - 2630415 +3 chr1 8245863 8254905 + 2630415 +4 chr1 8245863 8254905 + 5073804 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 8245863 | 8254905 | a | 0 | ... | +| chr1 | 8245863 | 8254905 | a | 0 | ... | +| chr1 | 904050 | 913092 | a | 0 | ... | +| chr1 | 3165216 | 3172060 | a | 0 | ... | +| chr1 | 5612708 | 5615449 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 5 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +2 chr1 904050 913092 - 7332772 +3 chr1 3165216 3172060 - 5073804 +4 chr1 5612708 5615449 - 2630415 +0 chr1 8245863 8254905 + 2630415 +1 chr1 8245863 8254905 + 5073804 +df2 + Chromosome Start End Strand Distance +0 chr1 904050 913092 - 7332772 +1 chr1 3165216 3172060 - 5073804 +2 chr1 5612708 5615449 - 2630415 +3 chr1 8245863 8254905 + 2630415 +4 chr1 8245863 8254905 + 5073804 +Actual + Chromosome Start End Strand Distance +0 chr1 904050 913092 - 7332772 +1 chr1 3165216 3172060 - 5073804 +2 chr1 5612708 5615449 - 2630415 +3 chr1 8245863 8254905 + 2630415 +4 chr1 8245863 8254905 + 5073804 + +Expected + Chromosome Start End Strand Distance +0 chr1 904050 913092 - 7332772 +1 chr1 3165216 3172060 - 5073804 +2 chr1 5612708 5615449 - 2630415 +3 chr1 8245863 8254905 + 2630415 +4 chr1 8245863 8254905 + 5073804 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=5, step=1) +Expected index +RangeIndex(start=0, stop=5, step=1) +index equal [ True True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpdhdrfkwq/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpdhdrfkwq/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 904050 907582 - 7338282 +1 chr1 3165216 3173153 - 5072711 +2 chr1 5612708 5618249 - 2627615 +3 chr1 8245863 8255592 + 2630415 +4 chr1 8245863 8255592 + 5073804 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 8245863 | 8255592 | a | 0 | ... | +| chr1 | 8245863 | 8255592 | a | 0 | ... | +| chr1 | 904050 | 907582 | a | 0 | ... | +| chr1 | 3165216 | 3173153 | a | 0 | ... | +| chr1 | 5612708 | 5618249 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 5 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +2 chr1 904050 907582 - 7338282 +3 chr1 3165216 3173153 - 5072711 +4 chr1 5612708 5618249 - 2627615 +0 chr1 8245863 8255592 + 2630415 +1 chr1 8245863 8255592 + 5073804 +df2 + Chromosome Start End Strand Distance +0 chr1 904050 907582 - 7338282 +1 chr1 3165216 3173153 - 5072711 +2 chr1 5612708 5618249 - 2627615 +3 chr1 8245863 8255592 + 2630415 +4 chr1 8245863 8255592 + 5073804 +Actual + Chromosome Start End Strand Distance +0 chr1 904050 907582 - 7338282 +1 chr1 3165216 3173153 - 5072711 +2 chr1 5612708 5618249 - 2627615 +3 chr1 8245863 8255592 + 2630415 +4 chr1 8245863 8255592 + 5073804 + +Expected + Chromosome Start End Strand Distance +0 chr1 904050 907582 - 7338282 +1 chr1 3165216 3173153 - 5072711 +2 chr1 5612708 5618249 - 2627615 +3 chr1 8245863 8255592 + 2630415 +4 chr1 8245863 8255592 + 5073804 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=5, step=1) +Expected index +RangeIndex(start=0, stop=5, step=1) +index equal [ True True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp8_eqsrjn/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp8_eqsrjn/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +4 chr15 6310075 6318340 - 1927524 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr15 | 6310075 | 6318340 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr15 6310075 6318340 - 1927524 +df2 + Chromosome Start End Strand Distance +4 chr15 6310075 6318340 - 1927524 +Actual + Chromosome Start End Strand Distance +0 chr15 6310075 6318340 - 1927524 + +Expected + Chromosome Start End Strand Distance +0 chr15 6310075 6318340 - 1927524 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=1, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +index equal [ True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp0q0438uj/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp0q0438uj/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 904050 907582 - 7338282 +1 chr1 3165216 3173153 - 5072711 +2 chr1 5612708 5618249 - 2627615 +3 chr1 8245863 8255592 + 2627615 +4 chr1 8245863 8255592 + 5072711 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 8245863 | 8255592 | a | 0 | ... | +| chr1 | 8245863 | 8255592 | a | 0 | ... | +| chr1 | 904050 | 907582 | a | 0 | ... | +| chr1 | 3165216 | 3173153 | a | 0 | ... | +| chr1 | 5612708 | 5618249 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 5 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +2 chr1 904050 907582 - 7338282 +3 chr1 3165216 3173153 - 5072711 +4 chr1 5612708 5618249 - 2627615 +0 chr1 8245863 8255592 + 2627615 +1 chr1 8245863 8255592 + 5072711 +df2 + Chromosome Start End Strand Distance +0 chr1 904050 907582 - 7338282 +1 chr1 3165216 3173153 - 5072711 +2 chr1 5612708 5618249 - 2627615 +3 chr1 8245863 8255592 + 2627615 +4 chr1 8245863 8255592 + 5072711 +Actual + Chromosome Start End Strand Distance +0 chr1 904050 907582 - 7338282 +1 chr1 3165216 3173153 - 5072711 +2 chr1 5612708 5618249 - 2627615 +3 chr1 8245863 8255592 + 2627615 +4 chr1 8245863 8255592 + 5072711 + +Expected + Chromosome Start End Strand Distance +0 chr1 904050 907582 - 7338282 +1 chr1 3165216 3173153 - 5072711 +2 chr1 5612708 5618249 - 2627615 +3 chr1 8245863 8255592 + 2627615 +4 chr1 8245863 8255592 + 5072711 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=5, step=1) +Expected index +RangeIndex(start=0, stop=5, step=1) +index equal [ True True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp_sd9s_in/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp_sd9s_in/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpwnng5yez/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpwnng5yez/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 7348646 7350458 + 980415 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 7348646 | 7350458 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 7348646 7350458 + 980415 +df2 + Chromosome Start End Strand Distance +0 chr1 7348646 7350458 + 980415 +Actual + Chromosome Start End Strand Distance +0 chr1 7348646 7350458 + 980415 + +Expected + Chromosome Start End Strand Distance +0 chr1 7348646 7350458 + 980415 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=1, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +index equal [ True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpo4bqq1n_/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpo4bqq1n_/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 7348646 7350458 + 980415 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 7348646 | 7350458 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 7348646 7350458 + 980415 +df2 + Chromosome Start End Strand Distance +0 chr1 7348646 7350458 + 980415 +Actual + Chromosome Start End Strand Distance +0 chr1 7348646 7350458 + 980415 + +Expected + Chromosome Start End Strand Distance +0 chr1 7348646 7350458 + 980415 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=1, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +index equal [ True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpc1yr95g2/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpc1yr95g2/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpvm89frh4/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpvm89frh4/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpc5aychgq/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpc5aychgq/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpbgvgw490/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpbgvgw490/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 7348646 7354941 - 7346834 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 7348646 | 7354941 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 7348646 7354941 - 7346834 +df2 + Chromosome Start End Strand Distance +0 chr1 7348646 7354941 - 7346834 +Actual + Chromosome Start End Strand Distance +0 chr1 7348646 7354941 - 7346834 + +Expected + Chromosome Start End Strand Distance +0 chr1 7348646 7354941 - 7346834 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=1, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +index equal [ True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp685vhfyp/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp685vhfyp/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +5 chr1 8205491 8210540 - 109322 +6 chr1 8205491 8210540 - 113166 +8 chr1 8825204 8834380 - 729035 +9 chr1 8825204 8834380 - 732879 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 8205491 | 8210540 | a | 0 | ... | +| chr1 | 8205491 | 8210540 | a | 0 | ... | +| chr1 | 8825204 | 8834380 | a | 0 | ... | +| chr1 | 8825204 | 8834380 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 4 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 8205491 8210540 - 109322 +1 chr1 8205491 8210540 - 113166 +2 chr1 8825204 8834380 - 729035 +3 chr1 8825204 8834380 - 732879 +df2 + Chromosome Start End Strand Distance +5 chr1 8205491 8210540 - 109322 +6 chr1 8205491 8210540 - 113166 +8 chr1 8825204 8834380 - 729035 +9 chr1 8825204 8834380 - 732879 +Actual + Chromosome Start End Strand Distance +0 chr1 8205491 8210540 - 109322 +1 chr1 8205491 8210540 - 113166 +2 chr1 8825204 8834380 - 729035 +3 chr1 8825204 8834380 - 732879 + +Expected + Chromosome Start End Strand Distance +0 chr1 8205491 8210540 - 109322 +1 chr1 8205491 8210540 - 113166 +2 chr1 8825204 8834380 - 729035 +3 chr1 8825204 8834380 - 732879 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=4, step=1) +Expected index +RangeIndex(start=0, stop=4, step=1) +index equal [ True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpgut6k2_q/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpgut6k2_q/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +7 chr1 8825204 8834380 - 729035 +8 chr1 8825204 8834380 - 732879 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 8825204 | 8834380 | a | 0 | ... | +| chr1 | 8825204 | 8834380 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 8825204 8834380 - 729035 +1 chr1 8825204 8834380 - 732879 +df2 + Chromosome Start End Strand Distance +7 chr1 8825204 8834380 - 729035 +8 chr1 8825204 8834380 - 732879 +Actual + Chromosome Start End Strand Distance +0 chr1 8825204 8834380 - 729035 +1 chr1 8825204 8834380 - 732879 + +Expected + Chromosome Start End Strand Distance +0 chr1 8825204 8834380 - 729035 +1 chr1 8825204 8834380 - 732879 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=2, step=1) +Expected index +RangeIndex(start=0, stop=2, step=1) +index equal [ True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmptl6hmr7u/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmptl6hmr7u/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +7 chr1 8825204 8834380 - 729035 +8 chr1 8825204 8834380 - 732879 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 8825204 | 8834380 | a | 0 | ... | +| chr1 | 8825204 | 8834380 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 8825204 8834380 - 729035 +1 chr1 8825204 8834380 - 732879 +df2 + Chromosome Start End Strand Distance +7 chr1 8825204 8834380 - 729035 +8 chr1 8825204 8834380 - 732879 +Actual + Chromosome Start End Strand Distance +0 chr1 8825204 8834380 - 729035 +1 chr1 8825204 8834380 - 732879 + +Expected + Chromosome Start End Strand Distance +0 chr1 8825204 8834380 - 729035 +1 chr1 8825204 8834380 - 732879 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=2, step=1) +Expected index +RangeIndex(start=0, stop=2, step=1) +index equal [ True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpbwhizlc0/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpbwhizlc0/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 2719586 2721637 + 6103568 +1 chr1 3898573 3907469 + 4917736 +2 chr1 5015841 5020332 + 3804873 +3 chr1 6012866 6021812 + 2803393 +4 chr1 7446726 7455423 + 1369782 +5 chr1 8205491 8210540 + 614665 +6 chr1 8407889 8409768 + 415437 +7 chr1 8825204 8834380 - 415437 +8 chr1 8825204 8834380 - 614665 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 8407889 | 8409768 | a | 0 | ... | +| chr1 | 5015841 | 5020332 | a | 0 | ... | +| chr1 | 6012866 | 6021812 | a | 0 | ... | +| chr1 | 2719586 | 2721637 | a | 0 | ... | +| ... | ... | ... | ... | ... | ... | +| chr1 | 7446726 | 7455423 | a | 0 | ... | +| chr1 | 8205491 | 8210540 | a | 0 | ... | +| chr1 | 8825204 | 8834380 | a | 0 | ... | +| chr1 | 8825204 | 8834380 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 9 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +3 chr1 2719586 2721637 + 6103568 +4 chr1 3898573 3907469 + 4917736 +1 chr1 5015841 5020332 + 3804873 +2 chr1 6012866 6021812 + 2803393 +5 chr1 7446726 7455423 + 1369782 +6 chr1 8205491 8210540 + 614665 +0 chr1 8407889 8409768 + 415437 +7 chr1 8825204 8834380 - 415437 +8 chr1 8825204 8834380 - 614665 +df2 + Chromosome Start End Strand Distance +0 chr1 2719586 2721637 + 6103568 +1 chr1 3898573 3907469 + 4917736 +2 chr1 5015841 5020332 + 3804873 +3 chr1 6012866 6021812 + 2803393 +4 chr1 7446726 7455423 + 1369782 +5 chr1 8205491 8210540 + 614665 +6 chr1 8407889 8409768 + 415437 +7 chr1 8825204 8834380 - 415437 +8 chr1 8825204 8834380 - 614665 +Actual + Chromosome Start End Strand Distance +0 chr1 2719586 2721637 + 6103568 +1 chr1 3898573 3907469 + 4917736 +2 chr1 5015841 5020332 + 3804873 +3 chr1 6012866 6021812 + 2803393 +4 chr1 7446726 7455423 + 1369782 +5 chr1 8205491 8210540 + 614665 +6 chr1 8407889 8409768 + 415437 +7 chr1 8825204 8834380 - 415437 +8 chr1 8825204 8834380 - 614665 + +Expected + Chromosome Start End Strand Distance +0 chr1 2719586 2721637 + 6103568 +1 chr1 3898573 3907469 + 4917736 +2 chr1 5015841 5020332 + 3804873 +3 chr1 6012866 6021812 + 2803393 +4 chr1 7446726 7455423 + 1369782 +5 chr1 8205491 8210540 + 614665 +6 chr1 8407889 8409768 + 415437 +7 chr1 8825204 8834380 - 415437 +8 chr1 8825204 8834380 - 614665 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=9, step=1) +Expected index +RangeIndex(start=0, stop=9, step=1) +index equal [ True True True True True True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmplzn4u8hk/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmplzn4u8hk/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 2719586 2721637 + 2719585 +1 chr1 2719586 2721637 + 4725090 +2 chr1 3898573 3907469 + 1178987 +3 chr1 3898573 3907469 + 3539258 +4 chr1 5015841 5020332 + 2296255 +5 chr1 5015841 5020332 + 2426395 +6 chr1 6012866 6021812 + 1424915 +7 chr1 6012866 6021812 + 2386078 +8 chr1 7446726 7455423 + 952467 +9 chr1 7446726 7455423 + 4727140 +10 chr1 8205491 8210540 + 197350 +11 chr1 8205491 8210540 + 758765 +12 chr1 8407889 8409768 + 961163 +13 chr1 8407889 8409768 + 5688303 +14 chr1 8825204 8834380 - 3809357 +16 chr20 5811917 5820567 + 2587323 +17 chr22 7758723 7759096 + 648794 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 8407889 | 8409768 | a | 0 | ... | +| chr1 | 8407889 | 8409768 | a | 0 | ... | +| chr1 | 5015841 | 5020332 | a | 0 | ... | +| chr1 | 5015841 | 5020332 | a | 0 | ... | +| ... | ... | ... | ... | ... | ... | +| chr1 | 7446726 | 7455423 | a | 0 | ... | +| chr1 | 8205491 | 8210540 | a | 0 | ... | +| chr1 | 8205491 | 8210540 | a | 0 | ... | +| chr1 | 8825204 | 8834380 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 17 rows and 12 columns from 3 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +6 chr1 2719586 2721637 + 2719585 +7 chr1 2719586 2721637 + 4725090 +8 chr1 3898573 3907469 + 1178987 +9 chr1 3898573 3907469 + 3539258 +2 chr1 5015841 5020332 + 2296255 +3 chr1 5015841 5020332 + 2426395 +15 chr20 5811917 5820567 + 2587323 +4 chr1 6012866 6021812 + 1424915 +5 chr1 6012866 6021812 + 2386078 +10 chr1 7446726 7455423 + 952467 +11 chr1 7446726 7455423 + 4727140 +16 chr22 7758723 7759096 + 648794 +12 chr1 8205491 8210540 + 197350 +13 chr1 8205491 8210540 + 758765 +0 chr1 8407889 8409768 + 961163 +1 chr1 8407889 8409768 + 5688303 +14 chr1 8825204 8834380 - 3809357 +df2 + Chromosome Start End Strand Distance +0 chr1 2719586 2721637 + 2719585 +1 chr1 2719586 2721637 + 4725090 +2 chr1 3898573 3907469 + 1178987 +3 chr1 3898573 3907469 + 3539258 +4 chr1 5015841 5020332 + 2296255 +5 chr1 5015841 5020332 + 2426395 +16 chr20 5811917 5820567 + 2587323 +6 chr1 6012866 6021812 + 1424915 +7 chr1 6012866 6021812 + 2386078 +8 chr1 7446726 7455423 + 952467 +9 chr1 7446726 7455423 + 4727140 +17 chr22 7758723 7759096 + 648794 +10 chr1 8205491 8210540 + 197350 +11 chr1 8205491 8210540 + 758765 +12 chr1 8407889 8409768 + 961163 +13 chr1 8407889 8409768 + 5688303 +14 chr1 8825204 8834380 - 3809357 +Actual + Chromosome Start End Strand Distance +0 chr1 2719586 2721637 + 2719585 +1 chr1 2719586 2721637 + 4725090 +2 chr1 3898573 3907469 + 1178987 +3 chr1 3898573 3907469 + 3539258 +4 chr1 5015841 5020332 + 2296255 +5 chr1 5015841 5020332 + 2426395 +6 chr1 6012866 6021812 + 1424915 +7 chr1 6012866 6021812 + 2386078 +8 chr1 7446726 7455423 + 952467 +9 chr1 7446726 7455423 + 4727140 +10 chr1 8205491 8210540 + 197350 +11 chr1 8205491 8210540 + 758765 +12 chr1 8407889 8409768 + 961163 +13 chr1 8407889 8409768 + 5688303 +14 chr1 8825204 8834380 - 3809357 +15 chr20 5811917 5820567 + 2587323 +16 chr22 7758723 7759096 + 648794 + +Expected + Chromosome Start End Strand Distance +0 chr1 2719586 2721637 + 2719585 +1 chr1 2719586 2721637 + 4725090 +2 chr1 3898573 3907469 + 1178987 +3 chr1 3898573 3907469 + 3539258 +4 chr1 5015841 5020332 + 2296255 +5 chr1 5015841 5020332 + 2426395 +6 chr1 6012866 6021812 + 1424915 +7 chr1 6012866 6021812 + 2386078 +8 chr1 7446726 7455423 + 952467 +9 chr1 7446726 7455423 + 4727140 +10 chr1 8205491 8210540 + 197350 +11 chr1 8205491 8210540 + 758765 +12 chr1 8407889 8409768 + 961163 +13 chr1 8407889 8409768 + 5688303 +14 chr1 8825204 8834380 - 3809357 +15 chr20 5811917 5820567 + 2587323 +16 chr22 7758723 7759096 + 648794 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=17, step=1) +Expected index +RangeIndex(start=0, stop=17, step=1) +index equal [ True True True True True True True True True True True True + True True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp6sz1pxhz/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp6sz1pxhz/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 2719586 2721637 + 2719585 +1 chr1 2719586 2721637 + 4725090 +2 chr1 3898573 3907469 + 1178987 +3 chr1 3898573 3907469 + 3539258 +4 chr1 5015841 5020332 + 2296255 +5 chr1 5015841 5020332 + 2426395 +6 chr1 6012866 6021812 + 1424915 +7 chr1 6012866 6021812 + 2386078 +8 chr1 7446726 7455423 + 952467 +9 chr1 7446726 7455423 + 4727140 +10 chr1 8205491 8210540 + 197350 +11 chr1 8205491 8210540 + 758765 +12 chr1 8407889 8409768 + 961163 +13 chr1 8407889 8409768 + 5688303 +14 chr1 8825204 8834380 - 3809357 +16 chr20 5811917 5820567 + 2587323 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 8407889 | 8409768 | a | 0 | ... | +| chr1 | 8407889 | 8409768 | a | 0 | ... | +| chr1 | 5015841 | 5020332 | a | 0 | ... | +| chr1 | 5015841 | 5020332 | a | 0 | ... | +| ... | ... | ... | ... | ... | ... | +| chr1 | 7446726 | 7455423 | a | 0 | ... | +| chr1 | 8205491 | 8210540 | a | 0 | ... | +| chr1 | 8205491 | 8210540 | a | 0 | ... | +| chr1 | 8825204 | 8834380 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 16 rows and 12 columns from 2 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +6 chr1 2719586 2721637 + 2719585 +7 chr1 2719586 2721637 + 4725090 +8 chr1 3898573 3907469 + 1178987 +9 chr1 3898573 3907469 + 3539258 +2 chr1 5015841 5020332 + 2296255 +3 chr1 5015841 5020332 + 2426395 +15 chr20 5811917 5820567 + 2587323 +4 chr1 6012866 6021812 + 1424915 +5 chr1 6012866 6021812 + 2386078 +10 chr1 7446726 7455423 + 952467 +11 chr1 7446726 7455423 + 4727140 +12 chr1 8205491 8210540 + 197350 +13 chr1 8205491 8210540 + 758765 +0 chr1 8407889 8409768 + 961163 +1 chr1 8407889 8409768 + 5688303 +14 chr1 8825204 8834380 - 3809357 +df2 + Chromosome Start End Strand Distance +0 chr1 2719586 2721637 + 2719585 +1 chr1 2719586 2721637 + 4725090 +2 chr1 3898573 3907469 + 1178987 +3 chr1 3898573 3907469 + 3539258 +4 chr1 5015841 5020332 + 2296255 +5 chr1 5015841 5020332 + 2426395 +16 chr20 5811917 5820567 + 2587323 +6 chr1 6012866 6021812 + 1424915 +7 chr1 6012866 6021812 + 2386078 +8 chr1 7446726 7455423 + 952467 +9 chr1 7446726 7455423 + 4727140 +10 chr1 8205491 8210540 + 197350 +11 chr1 8205491 8210540 + 758765 +12 chr1 8407889 8409768 + 961163 +13 chr1 8407889 8409768 + 5688303 +14 chr1 8825204 8834380 - 3809357 +Actual + Chromosome Start End Strand Distance +0 chr1 2719586 2721637 + 2719585 +1 chr1 2719586 2721637 + 4725090 +2 chr1 3898573 3907469 + 1178987 +3 chr1 3898573 3907469 + 3539258 +4 chr1 5015841 5020332 + 2296255 +5 chr1 5015841 5020332 + 2426395 +6 chr1 6012866 6021812 + 1424915 +7 chr1 6012866 6021812 + 2386078 +8 chr1 7446726 7455423 + 952467 +9 chr1 7446726 7455423 + 4727140 +10 chr1 8205491 8210540 + 197350 +11 chr1 8205491 8210540 + 758765 +12 chr1 8407889 8409768 + 961163 +13 chr1 8407889 8409768 + 5688303 +14 chr1 8825204 8834380 - 3809357 +15 chr20 5811917 5820567 + 2587323 + +Expected + Chromosome Start End Strand Distance +0 chr1 2719586 2721637 + 2719585 +1 chr1 2719586 2721637 + 4725090 +2 chr1 3898573 3907469 + 1178987 +3 chr1 3898573 3907469 + 3539258 +4 chr1 5015841 5020332 + 2296255 +5 chr1 5015841 5020332 + 2426395 +6 chr1 6012866 6021812 + 1424915 +7 chr1 6012866 6021812 + 2386078 +8 chr1 7446726 7455423 + 952467 +9 chr1 7446726 7455423 + 4727140 +10 chr1 8205491 8210540 + 197350 +11 chr1 8205491 8210540 + 758765 +12 chr1 8407889 8409768 + 961163 +13 chr1 8407889 8409768 + 5688303 +14 chr1 8825204 8834380 - 3809357 +15 chr20 5811917 5820567 + 2587323 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=16, step=1) +Expected index +RangeIndex(start=0, stop=16, step=1) +index equal [ True True True True True True True True True True True True + True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpizyaxvok/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpizyaxvok/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 2719586 2721637 + 2719585 +1 chr1 2719586 2721637 + 4725090 +2 chr1 3898573 3907469 + 3539258 +3 chr1 3898573 3907469 + 3898572 +4 chr1 5015841 5020332 + 2426395 +5 chr1 5015841 5020332 + 3387558 +6 chr1 6012866 6021812 + 1424915 +7 chr1 6012866 6021812 + 2386078 +8 chr1 7446726 7455423 + 952467 +9 chr1 7446726 7455423 + 7446725 +10 chr1 8205491 8210540 + 197350 +11 chr1 8205491 8210540 + 758765 +12 chr1 8407889 8409768 + 961163 +13 chr1 8407889 8409768 + 8407888 +14 chr1 8825204 8834380 - 3809357 +16 chr20 5811917 5820567 + 2587323 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 8407889 | 8409768 | a | 0 | ... | +| chr1 | 8407889 | 8409768 | a | 0 | ... | +| chr1 | 5015841 | 5020332 | a | 0 | ... | +| chr1 | 5015841 | 5020332 | a | 0 | ... | +| ... | ... | ... | ... | ... | ... | +| chr1 | 7446726 | 7455423 | a | 0 | ... | +| chr1 | 8205491 | 8210540 | a | 0 | ... | +| chr1 | 8205491 | 8210540 | a | 0 | ... | +| chr1 | 8825204 | 8834380 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 16 rows and 12 columns from 2 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +6 chr1 2719586 2721637 + 2719585 +7 chr1 2719586 2721637 + 4725090 +8 chr1 3898573 3907469 + 3539258 +9 chr1 3898573 3907469 + 3898572 +2 chr1 5015841 5020332 + 2426395 +3 chr1 5015841 5020332 + 3387558 +15 chr20 5811917 5820567 + 2587323 +4 chr1 6012866 6021812 + 1424915 +5 chr1 6012866 6021812 + 2386078 +10 chr1 7446726 7455423 + 952467 +11 chr1 7446726 7455423 + 7446725 +12 chr1 8205491 8210540 + 197350 +13 chr1 8205491 8210540 + 758765 +0 chr1 8407889 8409768 + 961163 +1 chr1 8407889 8409768 + 8407888 +14 chr1 8825204 8834380 - 3809357 +df2 + Chromosome Start End Strand Distance +0 chr1 2719586 2721637 + 2719585 +1 chr1 2719586 2721637 + 4725090 +2 chr1 3898573 3907469 + 3539258 +3 chr1 3898573 3907469 + 3898572 +4 chr1 5015841 5020332 + 2426395 +5 chr1 5015841 5020332 + 3387558 +16 chr20 5811917 5820567 + 2587323 +6 chr1 6012866 6021812 + 1424915 +7 chr1 6012866 6021812 + 2386078 +8 chr1 7446726 7455423 + 952467 +9 chr1 7446726 7455423 + 7446725 +10 chr1 8205491 8210540 + 197350 +11 chr1 8205491 8210540 + 758765 +12 chr1 8407889 8409768 + 961163 +13 chr1 8407889 8409768 + 8407888 +14 chr1 8825204 8834380 - 3809357 +Actual + Chromosome Start End Strand Distance +0 chr1 2719586 2721637 + 2719585 +1 chr1 2719586 2721637 + 4725090 +2 chr1 3898573 3907469 + 3539258 +3 chr1 3898573 3907469 + 3898572 +4 chr1 5015841 5020332 + 2426395 +5 chr1 5015841 5020332 + 3387558 +6 chr1 6012866 6021812 + 1424915 +7 chr1 6012866 6021812 + 2386078 +8 chr1 7446726 7455423 + 952467 +9 chr1 7446726 7455423 + 7446725 +10 chr1 8205491 8210540 + 197350 +11 chr1 8205491 8210540 + 758765 +12 chr1 8407889 8409768 + 961163 +13 chr1 8407889 8409768 + 8407888 +14 chr1 8825204 8834380 - 3809357 +15 chr20 5811917 5820567 + 2587323 + +Expected + Chromosome Start End Strand Distance +0 chr1 2719586 2721637 + 2719585 +1 chr1 2719586 2721637 + 4725090 +2 chr1 3898573 3907469 + 3539258 +3 chr1 3898573 3907469 + 3898572 +4 chr1 5015841 5020332 + 2426395 +5 chr1 5015841 5020332 + 3387558 +6 chr1 6012866 6021812 + 1424915 +7 chr1 6012866 6021812 + 2386078 +8 chr1 7446726 7455423 + 952467 +9 chr1 7446726 7455423 + 7446725 +10 chr1 8205491 8210540 + 197350 +11 chr1 8205491 8210540 + 758765 +12 chr1 8407889 8409768 + 961163 +13 chr1 8407889 8409768 + 8407888 +14 chr1 8825204 8834380 - 3809357 +15 chr20 5811917 5820567 + 2587323 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=16, step=1) +Expected index +RangeIndex(start=0, stop=16, step=1) +index equal [ True True True True True True True True True True True True + True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpy35s2skq/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpy35s2skq/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 6884776 6890287 - 4141494 +1 chr1 9762188 9769453 - 7018906 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 9762188 | 9769453 | a | 0 | ... | +| chr1 | 6884776 | 6890287 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +1 chr1 6884776 6890287 - 4141494 +0 chr1 9762188 9769453 - 7018906 +df2 + Chromosome Start End Strand Distance +0 chr1 6884776 6890287 - 4141494 +1 chr1 9762188 9769453 - 7018906 +Actual + Chromosome Start End Strand Distance +0 chr1 6884776 6890287 - 4141494 +1 chr1 9762188 9769453 - 7018906 + +Expected + Chromosome Start End Strand Distance +0 chr1 6884776 6890287 - 4141494 +1 chr1 9762188 9769453 - 7018906 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=2, step=1) +Expected index +RangeIndex(start=0, stop=2, step=1) +index equal [ True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpclto6_q1/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpclto6_q1/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 6884776 6890287 - 4151492 +1 chr1 6884776 6890287 - 6884775 +2 chr1 9762188 9769453 - 7028904 +3 chr1 9762188 9769453 - 9762187 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 9762188 | 9769453 | a | 0 | ... | +| chr1 | 9762188 | 9769453 | a | 0 | ... | +| chr1 | 6884776 | 6890287 | a | 0 | ... | +| chr1 | 6884776 | 6890287 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 4 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +2 chr1 6884776 6890287 - 4151492 +3 chr1 6884776 6890287 - 6884775 +0 chr1 9762188 9769453 - 7028904 +1 chr1 9762188 9769453 - 9762187 +df2 + Chromosome Start End Strand Distance +0 chr1 6884776 6890287 - 4151492 +1 chr1 6884776 6890287 - 6884775 +2 chr1 9762188 9769453 - 7028904 +3 chr1 9762188 9769453 - 9762187 +Actual + Chromosome Start End Strand Distance +0 chr1 6884776 6890287 - 4151492 +1 chr1 6884776 6890287 - 6884775 +2 chr1 9762188 9769453 - 7028904 +3 chr1 9762188 9769453 - 9762187 + +Expected + Chromosome Start End Strand Distance +0 chr1 6884776 6890287 - 4151492 +1 chr1 6884776 6890287 - 6884775 +2 chr1 9762188 9769453 - 7028904 +3 chr1 9762188 9769453 - 9762187 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=4, step=1) +Expected index +RangeIndex(start=0, stop=4, step=1) +index equal [ True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp_8k40xe4/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp_8k40xe4/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 6884776 6890287 - 4151492 +1 chr1 6884776 6890287 - 6884775 +2 chr1 9762188 9769453 - 7028904 +3 chr1 9762188 9769453 - 9762187 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 9762188 | 9769453 | a | 0 | ... | +| chr1 | 9762188 | 9769453 | a | 0 | ... | +| chr1 | 6884776 | 6890287 | a | 0 | ... | +| chr1 | 6884776 | 6890287 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 4 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +2 chr1 6884776 6890287 - 4151492 +3 chr1 6884776 6890287 - 6884775 +0 chr1 9762188 9769453 - 7028904 +1 chr1 9762188 9769453 - 9762187 +df2 + Chromosome Start End Strand Distance +0 chr1 6884776 6890287 - 4151492 +1 chr1 6884776 6890287 - 6884775 +2 chr1 9762188 9769453 - 7028904 +3 chr1 9762188 9769453 - 9762187 +Actual + Chromosome Start End Strand Distance +0 chr1 6884776 6890287 - 4151492 +1 chr1 6884776 6890287 - 6884775 +2 chr1 9762188 9769453 - 7028904 +3 chr1 9762188 9769453 - 9762187 + +Expected + Chromosome Start End Strand Distance +0 chr1 6884776 6890287 - 4151492 +1 chr1 6884776 6890287 - 6884775 +2 chr1 9762188 9769453 - 7028904 +3 chr1 9762188 9769453 - 9762187 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=4, step=1) +Expected index +RangeIndex(start=0, stop=4, step=1) +index equal [ True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpl63aeg88/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpl63aeg88/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpeddgmilm/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpeddgmilm/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 6884776 6890287 - 6884775 +1 chr1 9762188 9769453 - 9762187 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 9762188 | 9769453 | a | 0 | ... | +| chr1 | 6884776 | 6890287 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +1 chr1 6884776 6890287 - 6884775 +0 chr1 9762188 9769453 - 9762187 +df2 + Chromosome Start End Strand Distance +0 chr1 6884776 6890287 - 6884775 +1 chr1 9762188 9769453 - 9762187 +Actual + Chromosome Start End Strand Distance +0 chr1 6884776 6890287 - 6884775 +1 chr1 9762188 9769453 - 9762187 + +Expected + Chromosome Start End Strand Distance +0 chr1 6884776 6890287 - 6884775 +1 chr1 9762188 9769453 - 9762187 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=2, step=1) +Expected index +RangeIndex(start=0, stop=2, step=1) +index equal [ True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp_2pb5kfq/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp_2pb5kfq/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 3429484 3431238 + 755789 +1 chr1 7274158 7283167 + 4600463 +2 chr1 7550446 7559345 + 4876751 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 7274158 | 7283167 | a | 0 | ... | +| chr1 | 3429484 | 3431238 | a | 0 | ... | +| chr1 | 7550446 | 7559345 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 3 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +1 chr1 3429484 3431238 + 755789 +0 chr1 7274158 7283167 + 4600463 +2 chr1 7550446 7559345 + 4876751 +df2 + Chromosome Start End Strand Distance +0 chr1 3429484 3431238 + 755789 +1 chr1 7274158 7283167 + 4600463 +2 chr1 7550446 7559345 + 4876751 +Actual + Chromosome Start End Strand Distance +0 chr1 3429484 3431238 + 755789 +1 chr1 7274158 7283167 + 4600463 +2 chr1 7550446 7559345 + 4876751 + +Expected + Chromosome Start End Strand Distance +0 chr1 3429484 3431238 + 755789 +1 chr1 7274158 7283167 + 4600463 +2 chr1 7550446 7559345 + 4876751 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=3, step=1) +Expected index +RangeIndex(start=0, stop=3, step=1) +index equal [ True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpbp42pbv1/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpbp42pbv1/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpvbjxl8jq/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpvbjxl8jq/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpje2032zg/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpje2032zg/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 7274158 7274159 + 7274157 +1 chr1 7274158 7274159 + 7274157 +2 chr1 7274158 7274159 + 7274157 +3 chr1 7274158 7274159 + 7274157 +4 chr1 7274158 7274159 + 7274157 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 7274158 | 7274159 | a | 0 | ... | +| chr1 | 7274158 | 7274159 | a | 0 | ... | +| chr1 | 7274158 | 7274159 | a | 0 | ... | +| chr1 | 7274158 | 7274159 | a | 0 | ... | +| chr1 | 7274158 | 7274159 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 5 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 7274158 7274159 + 7274157 +1 chr1 7274158 7274159 + 7274157 +2 chr1 7274158 7274159 + 7274157 +3 chr1 7274158 7274159 + 7274157 +4 chr1 7274158 7274159 + 7274157 +df2 + Chromosome Start End Strand Distance +0 chr1 7274158 7274159 + 7274157 +1 chr1 7274158 7274159 + 7274157 +2 chr1 7274158 7274159 + 7274157 +3 chr1 7274158 7274159 + 7274157 +4 chr1 7274158 7274159 + 7274157 +Actual + Chromosome Start End Strand Distance +0 chr1 7274158 7274159 + 7274157 +1 chr1 7274158 7274159 + 7274157 +2 chr1 7274158 7274159 + 7274157 +3 chr1 7274158 7274159 + 7274157 +4 chr1 7274158 7274159 + 7274157 + +Expected + Chromosome Start End Strand Distance +0 chr1 7274158 7274159 + 7274157 +1 chr1 7274158 7274159 + 7274157 +2 chr1 7274158 7274159 + 7274157 +3 chr1 7274158 7274159 + 7274157 +4 chr1 7274158 7274159 + 7274157 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=5, step=1) +Expected index +RangeIndex(start=0, stop=5, step=1) +index equal [ True True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpd4ktk12e/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpd4ktk12e/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 +4 chr1 2 3 + 1 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 1 | 2 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 3 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 +1 chr1 2 3 + 1 +2 chr1 2 3 + 1 +df2 + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 +4 chr1 2 3 + 1 +Actual + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 +1 chr1 2 3 + 1 +2 chr1 2 3 + 1 + +Expected + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 +1 chr1 2 3 + 1 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=3, step=1) +Expected index +RangeIndex(start=0, stop=2, step=1) +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp94rpip0r/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp94rpip0r/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 +4 chr1 2 3 + 1 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 1 | 2 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 3 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 +1 chr1 2 3 + 1 +2 chr1 2 3 + 1 +df2 + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 +4 chr1 2 3 + 1 +Actual + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 +1 chr1 2 3 + 1 +2 chr1 2 3 + 1 + +Expected + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 +1 chr1 2 3 + 1 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=3, step=1) +Expected index +RangeIndex(start=0, stop=2, step=1) +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp711nqhzh/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp711nqhzh/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 +4 chr1 2 3 + 1 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 1 | 2 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 3 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 +1 chr1 2 3 + 1 +2 chr1 2 3 + 1 +df2 + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 +4 chr1 2 3 + 1 +Actual + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 +1 chr1 2 3 + 1 +2 chr1 2 3 + 1 + +Expected + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 +1 chr1 2 3 + 1 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=3, step=1) +Expected index +RangeIndex(start=0, stop=2, step=1) +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpehdo421o/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpehdo421o/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 +4 chr1 2 3 + 1 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 1 | 2 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 3 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 +1 chr1 2 3 + 1 +2 chr1 2 3 + 1 +df2 + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 +4 chr1 2 3 + 1 +Actual + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 +1 chr1 2 3 + 1 +2 chr1 2 3 + 1 + +Expected + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 +1 chr1 2 3 + 1 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=3, step=1) +Expected index +RangeIndex(start=0, stop=2, step=1) +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp2ehm5tc0/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp2ehm5tc0/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 +4 chr1 2 3 + 1 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 1 | 2 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 3 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 +1 chr1 2 3 + 1 +2 chr1 2 3 + 1 +df2 + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 +4 chr1 2 3 + 1 +Actual + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 +1 chr1 2 3 + 1 +2 chr1 2 3 + 1 + +Expected + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 +1 chr1 2 3 + 1 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=3, step=1) +Expected index +RangeIndex(start=0, stop=2, step=1) +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmppp5xqhjd/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmppp5xqhjd/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 +4 chr1 2 3 + 1 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 1 | 2 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 3 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 +1 chr1 2 3 + 1 +2 chr1 2 3 + 1 +df2 + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 +4 chr1 2 3 + 1 +Actual + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 +1 chr1 2 3 + 1 +2 chr1 2 3 + 1 + +Expected + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 +1 chr1 2 3 + 1 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=3, step=1) +Expected index +RangeIndex(start=0, stop=2, step=1) +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpqm6pczsn/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpqm6pczsn/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +5 chr1 2 3 - 1 +6 chr1 2 3 - 1 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 2 3 - 1 +1 chr1 2 3 - 1 +df2 + Chromosome Start End Strand Distance +5 chr1 2 3 - 1 +6 chr1 2 3 - 1 +Actual + Chromosome Start End Strand Distance +0 chr1 2 3 - 1 +1 chr1 2 3 - 1 + +Expected + Chromosome Start End Strand Distance +0 chr1 2 3 - 1 +1 chr1 2 3 - 1 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=2, step=1) +Expected index +RangeIndex(start=0, stop=2, step=1) +index equal [ True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp2q9p7nh5/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp2q9p7nh5/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpxocckxr9/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpxocckxr9/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 +4 chr1 2 3 + 1 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 1 | 2 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 3 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 +1 chr1 2 3 + 1 +2 chr1 2 3 + 1 +df2 + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 +4 chr1 2 3 + 1 +Actual + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 +1 chr1 2 3 + 1 +2 chr1 2 3 + 1 + +Expected + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 +1 chr1 2 3 + 1 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=3, step=1) +Expected index +RangeIndex(start=0, stop=2, step=1) +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpd64vnqbm/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpd64vnqbm/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +5 chr1 2 3 - 1 +6 chr1 2 3 - 1 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 2 3 - 1 +1 chr1 2 3 - 1 +df2 + Chromosome Start End Strand Distance +5 chr1 2 3 - 1 +6 chr1 2 3 - 1 +Actual + Chromosome Start End Strand Distance +0 chr1 2 3 - 1 +1 chr1 2 3 - 1 + +Expected + Chromosome Start End Strand Distance +0 chr1 2 3 - 1 +1 chr1 2 3 - 1 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=2, step=1) +Expected index +RangeIndex(start=0, stop=2, step=1) +index equal [ True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpz32toli9/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpz32toli9/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +5 chr1 2 3 - 1 +6 chr1 2 3 - 1 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 2 3 - 1 +1 chr1 2 3 - 1 +df2 + Chromosome Start End Strand Distance +5 chr1 2 3 - 1 +6 chr1 2 3 - 1 +Actual + Chromosome Start End Strand Distance +0 chr1 2 3 - 1 +1 chr1 2 3 - 1 + +Expected + Chromosome Start End Strand Distance +0 chr1 2 3 - 1 +1 chr1 2 3 - 1 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=2, step=1) +Expected index +RangeIndex(start=0, stop=2, step=1) +index equal [ True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpb556rsmy/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpb556rsmy/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +5 chr1 2 3 - 1 +6 chr1 2 3 - 1 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 2 3 - 1 +1 chr1 2 3 - 1 +df2 + Chromosome Start End Strand Distance +5 chr1 2 3 - 1 +6 chr1 2 3 - 1 +Actual + Chromosome Start End Strand Distance +0 chr1 2 3 - 1 +1 chr1 2 3 - 1 + +Expected + Chromosome Start End Strand Distance +0 chr1 2 3 - 1 +1 chr1 2 3 - 1 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=2, step=1) +Expected index +RangeIndex(start=0, stop=2, step=1) +index equal [ True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpxahx5_ak/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpxahx5_ak/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +4 chr1 2 3 + 1 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 2 | 3 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +df2 + Chromosome Start End Strand Distance +4 chr1 2 3 + 1 +Actual + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 + +Expected + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=1, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +index equal [ True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpzg02_26w/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpzg02_26w/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpg4w_4wct/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpg4w_4wct/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmptkx_pt_s/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmptkx_pt_s/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 +4 chr1 2 3 + 1 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 1 | 2 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 3 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 +1 chr1 2 3 + 1 +2 chr1 2 3 + 1 +df2 + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 +4 chr1 2 3 + 1 +Actual + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 +1 chr1 2 3 + 1 +2 chr1 2 3 + 1 + +Expected + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 +1 chr1 2 3 + 1 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=3, step=1) +Expected index +RangeIndex(start=0, stop=2, step=1) +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp8zzbdfdo/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp8zzbdfdo/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmprqt6n9h9/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmprqt6n9h9/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 +4 chr1 2 3 + 1 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 1 | 2 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 3 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 +1 chr1 2 3 + 1 +2 chr1 2 3 + 1 +df2 + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 +4 chr1 2 3 + 1 +Actual + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 +1 chr1 2 3 + 1 +2 chr1 2 3 + 1 + +Expected + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 +1 chr1 2 3 + 1 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=3, step=1) +Expected index +RangeIndex(start=0, stop=2, step=1) +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpekndavjt/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpekndavjt/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpiv77it0a/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpiv77it0a/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp6uf7j6cq/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp6uf7j6cq/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp3rskoyny/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp3rskoyny/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp4eduw95y/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp4eduw95y/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpa7in44dc/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpa7in44dc/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 +4 chr1 2 3 + 1 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 1 | 2 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 3 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 +1 chr1 2 3 + 1 +2 chr1 2 3 + 1 +df2 + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 +4 chr1 2 3 + 1 +Actual + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 +1 chr1 2 3 + 1 +2 chr1 2 3 + 1 + +Expected + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 +1 chr1 2 3 + 1 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=3, step=1) +Expected index +RangeIndex(start=0, stop=2, step=1) +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpm9hf3b7u/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpm9hf3b7u/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 +4 chr1 2 3 + 1 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 1 | 2 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 3 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 +1 chr1 2 3 + 1 +2 chr1 2 3 + 1 +df2 + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 +4 chr1 2 3 + 1 +Actual + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 +1 chr1 2 3 + 1 +2 chr1 2 3 + 1 + +Expected + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 +1 chr1 2 3 + 1 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=3, step=1) +Expected index +RangeIndex(start=0, stop=2, step=1) +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpjbl6jign/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpjbl6jign/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmptarn8ptw/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmptarn8ptw/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 1 | 2 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 +df2 + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 +Actual + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 + +Expected + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=1, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +index equal [ True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp2enbcaxm/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp2enbcaxm/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpxot9f383/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpxot9f383/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp2kxyjauu/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp2kxyjauu/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpnxt5s9q9/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpnxt5s9q9/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpcwi0jgak/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpcwi0jgak/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpyyph3rm7/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpyyph3rm7/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp0ig81umb/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp0ig81umb/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpk0jzrkiq/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpk0jzrkiq/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpx3mhczbp/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpx3mhczbp/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpgus6tgfd/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpgus6tgfd/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpd7dpkpir/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpd7dpkpir/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +5 chr1 2 3 - 1 +6 chr1 2 3 - 1 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 2 3 - 1 +1 chr1 2 3 - 1 +df2 + Chromosome Start End Strand Distance +5 chr1 2 3 - 1 +6 chr1 2 3 - 1 +Actual + Chromosome Start End Strand Distance +0 chr1 2 3 - 1 +1 chr1 2 3 - 1 + +Expected + Chromosome Start End Strand Distance +0 chr1 2 3 - 1 +1 chr1 2 3 - 1 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=2, step=1) +Expected index +RangeIndex(start=0, stop=2, step=1) +index equal [ True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp9kk_rfu2/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp9kk_rfu2/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpwfqhacp7/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpwfqhacp7/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpw831nvuk/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpw831nvuk/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +5 chr1 2 3 - 1 +6 chr1 2 3 - 1 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 2 3 - 1 +1 chr1 2 3 - 1 +df2 + Chromosome Start End Strand Distance +5 chr1 2 3 - 1 +6 chr1 2 3 - 1 +Actual + Chromosome Start End Strand Distance +0 chr1 2 3 - 1 +1 chr1 2 3 - 1 + +Expected + Chromosome Start End Strand Distance +0 chr1 2 3 - 1 +1 chr1 2 3 - 1 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=2, step=1) +Expected index +RangeIndex(start=0, stop=2, step=1) +index equal [ True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp1k1tloow/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp1k1tloow/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +4 chr1 2 3 + 1 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 2 | 3 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +df2 + Chromosome Start End Strand Distance +4 chr1 2 3 + 1 +Actual + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 + +Expected + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=1, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +index equal [ True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmps877xfvt/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmps877xfvt/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmprorksoew/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmprorksoew/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +6 chr1 3 4 + 2 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 3 | 4 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 3 4 + 2 +df2 + Chromosome Start End Strand Distance +6 chr1 3 4 + 2 +Actual + Chromosome Start End Strand Distance +0 chr1 3 4 + 2 + +Expected + Chromosome Start End Strand Distance +0 chr1 3 4 + 2 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=1, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +index equal [ True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp5k78zjn4/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp5k78zjn4/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 +4 chr1 2 3 + 1 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 1 | 2 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 3 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 +1 chr1 2 3 + 1 +2 chr1 2 3 + 1 +df2 + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 +4 chr1 2 3 + 1 +Actual + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 +1 chr1 2 3 + 1 +2 chr1 2 3 + 1 + +Expected + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 +1 chr1 2 3 + 1 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=3, step=1) +Expected index +RangeIndex(start=0, stop=2, step=1) +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpw5ebr998/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpw5ebr998/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 +4 chr1 2 3 + 1 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 1 | 2 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 3 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 +1 chr1 2 3 + 1 +2 chr1 2 3 + 1 +df2 + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 +4 chr1 2 3 + 1 +Actual + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 +1 chr1 2 3 + 1 +2 chr1 2 3 + 1 + +Expected + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 +1 chr1 2 3 + 1 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=3, step=1) +Expected index +RangeIndex(start=0, stop=2, step=1) +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmphp4eh4q8/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmphp4eh4q8/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 +4 chr1 2 3 + 1 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 1 | 2 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 3 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 +1 chr1 2 3 + 1 +2 chr1 2 3 + 1 +df2 + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 +4 chr1 2 3 + 1 +Actual + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 +1 chr1 2 3 + 1 +2 chr1 2 3 + 1 + +Expected + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 +1 chr1 2 3 + 1 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=3, step=1) +Expected index +RangeIndex(start=0, stop=2, step=1) +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmprchr82ix/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmprchr82ix/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 +4 chr1 2 3 + 1 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 1 | 2 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 3 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 +1 chr1 2 3 + 1 +2 chr1 2 3 + 1 +df2 + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 +4 chr1 2 3 + 1 +Actual + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 +1 chr1 2 3 + 1 +2 chr1 2 3 + 1 + +Expected + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 +1 chr1 2 3 + 1 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=3, step=1) +Expected index +RangeIndex(start=0, stop=2, step=1) +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmposqwxg6b/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmposqwxg6b/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 +4 chr1 2 3 + 1 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 1 | 2 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 3 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 +1 chr1 2 3 + 1 +2 chr1 2 3 + 1 +df2 + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 +4 chr1 2 3 + 1 +Actual + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 +1 chr1 2 3 + 1 +2 chr1 2 3 + 1 + +Expected + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 +1 chr1 2 3 + 1 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=3, step=1) +Expected index +RangeIndex(start=0, stop=2, step=1) +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp_6q14eu8/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp_6q14eu8/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +5 chr1 2 3 - 1 +6 chr1 2 3 - 1 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 2 3 - 1 +1 chr1 2 3 - 1 +df2 + Chromosome Start End Strand Distance +5 chr1 2 3 - 1 +6 chr1 2 3 - 1 +Actual + Chromosome Start End Strand Distance +0 chr1 2 3 - 1 +1 chr1 2 3 - 1 + +Expected + Chromosome Start End Strand Distance +0 chr1 2 3 - 1 +1 chr1 2 3 - 1 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=2, step=1) +Expected index +RangeIndex(start=0, stop=2, step=1) +index equal [ True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp3h4bhqi5/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp3h4bhqi5/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +4 chr1 2 3 + 1 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 2 | 3 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +df2 + Chromosome Start End Strand Distance +4 chr1 2 3 + 1 +Actual + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 + +Expected + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=1, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +index equal [ True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp9i_db3a3/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp9i_db3a3/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +4 chr1 2 3 + 1 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 2 | 3 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +df2 + Chromosome Start End Strand Distance +4 chr1 2 3 + 1 +Actual + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 + +Expected + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=1, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +index equal [ True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp0zcm6yf2/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp0zcm6yf2/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +5 chr1 2 3 - 1 +6 chr1 2 3 - 1 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 2 3 - 1 +1 chr1 2 3 - 1 +df2 + Chromosome Start End Strand Distance +5 chr1 2 3 - 1 +6 chr1 2 3 - 1 +Actual + Chromosome Start End Strand Distance +0 chr1 2 3 - 1 +1 chr1 2 3 - 1 + +Expected + Chromosome Start End Strand Distance +0 chr1 2 3 - 1 +1 chr1 2 3 - 1 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=2, step=1) +Expected index +RangeIndex(start=0, stop=2, step=1) +index equal [ True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp78dpujdo/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp78dpujdo/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +5 chr1 2 3 - 1 +6 chr1 2 3 - 1 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 2 3 - 1 +1 chr1 2 3 - 1 +df2 + Chromosome Start End Strand Distance +5 chr1 2 3 - 1 +6 chr1 2 3 - 1 +Actual + Chromosome Start End Strand Distance +0 chr1 2 3 - 1 +1 chr1 2 3 - 1 + +Expected + Chromosome Start End Strand Distance +0 chr1 2 3 - 1 +1 chr1 2 3 - 1 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=2, step=1) +Expected index +RangeIndex(start=0, stop=2, step=1) +index equal [ True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpv040fb72/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpv040fb72/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp0jskt8p5/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp0jskt8p5/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +5 chr1 2 3 - 1 +6 chr1 2 3 - 1 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 2 3 - 1 +1 chr1 2 3 - 1 +df2 + Chromosome Start End Strand Distance +5 chr1 2 3 - 1 +6 chr1 2 3 - 1 +Actual + Chromosome Start End Strand Distance +0 chr1 2 3 - 1 +1 chr1 2 3 - 1 + +Expected + Chromosome Start End Strand Distance +0 chr1 2 3 - 1 +1 chr1 2 3 - 1 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=2, step=1) +Expected index +RangeIndex(start=0, stop=2, step=1) +index equal [ True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpsef1o2f3/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpsef1o2f3/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpm13qg1fq/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpm13qg1fq/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpn51ay44z/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpn51ay44z/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpfso02wkt/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpfso02wkt/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp22svq0d7/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp22svq0d7/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpd4ko3o5v/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpd4ko3o5v/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpxl1uh_t5/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpxl1uh_t5/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp2psfdugf/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp2psfdugf/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp4xk0zuxq/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp4xk0zuxq/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpupjzsvrz/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpupjzsvrz/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpbeudw7fn/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpbeudw7fn/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 +4 chr1 2 3 + 1 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 1 | 2 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 3 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 +1 chr1 2 3 + 1 +2 chr1 2 3 + 1 +df2 + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 +4 chr1 2 3 + 1 +Actual + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 +1 chr1 2 3 + 1 +2 chr1 2 3 + 1 + +Expected + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 +1 chr1 2 3 + 1 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=3, step=1) +Expected index +RangeIndex(start=0, stop=2, step=1) +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp4j6qqnpn/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp4j6qqnpn/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 +4 chr1 2 3 + 1 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 1 | 2 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 3 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 +1 chr1 2 3 + 1 +2 chr1 2 3 + 1 +df2 + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 +4 chr1 2 3 + 1 +Actual + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 +1 chr1 2 3 + 1 +2 chr1 2 3 + 1 + +Expected + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 +1 chr1 2 3 + 1 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=3, step=1) +Expected index +RangeIndex(start=0, stop=2, step=1) +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpf8c80x1g/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpf8c80x1g/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +4 chr1 2 3 + 1 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 2 | 3 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +df2 + Chromosome Start End Strand Distance +4 chr1 2 3 + 1 +Actual + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 + +Expected + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=1, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +index equal [ True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpc1fnqql_/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpc1fnqql_/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpcxt2w7ll/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpcxt2w7ll/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +4 chr1 2 3 + 1 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +1 chr1 2 3 + 1 +df2 + Chromosome Start End Strand Distance +4 chr1 2 3 + 1 +Actual + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +1 chr1 2 3 + 1 + +Expected + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=2, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmprj2yao_6/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmprj2yao_6/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp9cxamo5r/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp9cxamo5r/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpp866pc81/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpp866pc81/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +4 chr1 2 3 + 1 +5 chr1 2 3 + 1 +6 chr1 2 3 + 1 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 3 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +1 chr1 2 3 + 1 +2 chr1 2 3 + 1 +df2 + Chromosome Start End Strand Distance +4 chr1 2 3 + 1 +5 chr1 2 3 + 1 +6 chr1 2 3 + 1 +Actual + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +1 chr1 2 3 + 1 +2 chr1 2 3 + 1 + +Expected + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +1 chr1 2 3 + 1 +2 chr1 2 3 + 1 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=3, step=1) +Expected index +RangeIndex(start=0, stop=3, step=1) +index equal [ True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmprfdzfsu9/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmprfdzfsu9/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpyyow_m46/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpyyow_m46/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp9sc2h_21/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp9sc2h_21/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +3 chr1 2 3 + 1 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +1 chr1 2 3 + 1 +df2 + Chromosome Start End Strand Distance +3 chr1 2 3 + 1 +Actual + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +1 chr1 2 3 + 1 + +Expected + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=2, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp79fzctng/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp79fzctng/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +2 chr1 2 3 + 1 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +1 chr1 2 3 + 1 +df2 + Chromosome Start End Strand Distance +2 chr1 2 3 + 1 +Actual + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +1 chr1 2 3 + 1 + +Expected + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=2, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpewd07346/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpewd07346/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +1 chr1 2 3 + 1 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +1 chr1 2 3 + 1 +df2 + Chromosome Start End Strand Distance +1 chr1 2 3 + 1 +Actual + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +1 chr1 2 3 + 1 + +Expected + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=2, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp5k2cpl2c/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp5k2cpl2c/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +1 chr1 2 3 + 1 +df2 + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +Actual + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +1 chr1 2 3 + 1 + +Expected + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=2, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpq11lqtow/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpq11lqtow/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +1 chr1 2 3 + 1 +2 chr1 2 3 + 1 +3 chr1 2 3 + 1 +4 chr1 2 3 + 1 +5 chr1 2 3 + 1 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 6 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +1 chr1 2 3 + 1 +2 chr1 2 3 + 1 +3 chr1 2 3 + 1 +4 chr1 2 3 + 1 +5 chr1 2 3 + 1 +df2 + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +1 chr1 2 3 + 1 +2 chr1 2 3 + 1 +3 chr1 2 3 + 1 +4 chr1 2 3 + 1 +5 chr1 2 3 + 1 +Actual + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +1 chr1 2 3 + 1 +2 chr1 2 3 + 1 +3 chr1 2 3 + 1 +4 chr1 2 3 + 1 +5 chr1 2 3 + 1 + +Expected + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +1 chr1 2 3 + 1 +2 chr1 2 3 + 1 +3 chr1 2 3 + 1 +4 chr1 2 3 + 1 +5 chr1 2 3 + 1 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=6, step=1) +Expected index +RangeIndex(start=0, stop=6, step=1) +index equal [ True True True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpfp93i47b/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpfp93i47b/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmprp8xy6d3/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmprp8xy6d3/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpn0bgyvik/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpn0bgyvik/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp4tqjf80c/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp4tqjf80c/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp6f7l06ex/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp6f7l06ex/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpxbxexd23/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpxbxexd23/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpko1dogks/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpko1dogks/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpx8tqrxd1/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpx8tqrxd1/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpb_tt8s7a/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpb_tt8s7a/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpq7tr6c0u/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpq7tr6c0u/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp47b1exwh/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp47b1exwh/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +1 chr1 2 3 + 1 +df2 + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +Actual + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +1 chr1 2 3 + 1 + +Expected + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=2, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpis_1tx_j/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpis_1tx_j/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp1iitu_n1/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp1iitu_n1/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpb3z0ivbl/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpb3z0ivbl/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpwrg92vua/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpwrg92vua/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpr0ghzt5q/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpr0ghzt5q/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpgt3zbnr1/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpgt3zbnr1/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpc8af60e2/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpc8af60e2/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpge3szo6t/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpge3szo6t/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpd4xs3l2l/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpd4xs3l2l/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpcya3mza5/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpcya3mza5/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpgylyif4g/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpgylyif4g/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmps1f66rkd/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmps1f66rkd/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpf1ux4xtd/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpf1ux4xtd/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpw9yp8dtw/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpw9yp8dtw/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp0cnzq3fn/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp0cnzq3fn/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpt88hx1q0/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpt88hx1q0/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpr05zze4l/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpr05zze4l/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp_g92g8az/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp_g92g8az/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp51nqde3r/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp51nqde3r/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp4ehe32y_/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp4ehe32y_/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpgh3b26ba/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpgh3b26ba/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 1 2 + 23 +1 chr1 1 2 + 23 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 1 | 2 | a | 0 | ... | +| chr1 | 1 | 2 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 1 2 + 23 +1 chr1 1 2 + 23 +df2 + Chromosome Start End Strand Distance +0 chr1 1 2 + 23 +1 chr1 1 2 + 23 +Actual + Chromosome Start End Strand Distance +0 chr1 1 2 + 23 +1 chr1 1 2 + 23 + +Expected + Chromosome Start End Strand Distance +0 chr1 1 2 + 23 +1 chr1 1 2 + 23 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=2, step=1) +Expected index +RangeIndex(start=0, stop=2, step=1) +index equal [ True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp9j7v7mt4/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp9j7v7mt4/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +1 chr1 2 3 - 1 +2 chr1 2 3 - 1 +3 chr1 2 3 - 1 +4 chr1 2 3 - 1 +5 chr1 2 3 - 1 +6 chr1 2 3 - 1 +7 chr1 2 3 - 1 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 7 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 2 3 - 1 +1 chr1 2 3 - 1 +2 chr1 2 3 - 1 +3 chr1 2 3 - 1 +4 chr1 2 3 - 1 +5 chr1 2 3 - 1 +6 chr1 2 3 - 1 +df2 + Chromosome Start End Strand Distance +1 chr1 2 3 - 1 +2 chr1 2 3 - 1 +3 chr1 2 3 - 1 +4 chr1 2 3 - 1 +5 chr1 2 3 - 1 +6 chr1 2 3 - 1 +7 chr1 2 3 - 1 +Actual + Chromosome Start End Strand Distance +0 chr1 2 3 - 1 +1 chr1 2 3 - 1 +2 chr1 2 3 - 1 +3 chr1 2 3 - 1 +4 chr1 2 3 - 1 +5 chr1 2 3 - 1 +6 chr1 2 3 - 1 + +Expected + Chromosome Start End Strand Distance +0 chr1 2 3 - 1 +1 chr1 2 3 - 1 +2 chr1 2 3 - 1 +3 chr1 2 3 - 1 +4 chr1 2 3 - 1 +5 chr1 2 3 - 1 +6 chr1 2 3 - 1 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=7, step=1) +Expected index +RangeIndex(start=0, stop=7, step=1) +index equal [ True True True True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp7fsx6rj5/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp7fsx6rj5/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +1 chr1 2 3 + 1 +df2 + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +Actual + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +1 chr1 2 3 + 1 + +Expected + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=2, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp7op_duln/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp7op_duln/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +1 chr1 2 3 - 1 +2 chr1 2 3 - 1 +3 chr1 2 3 - 1 +4 chr1 2 3 - 1 +5 chr1 2 3 - 1 +6 chr1 2 3 - 1 +7 chr1 2 3 - 1 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 7 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 2 3 - 1 +1 chr1 2 3 - 1 +2 chr1 2 3 - 1 +3 chr1 2 3 - 1 +4 chr1 2 3 - 1 +5 chr1 2 3 - 1 +6 chr1 2 3 - 1 +df2 + Chromosome Start End Strand Distance +1 chr1 2 3 - 1 +2 chr1 2 3 - 1 +3 chr1 2 3 - 1 +4 chr1 2 3 - 1 +5 chr1 2 3 - 1 +6 chr1 2 3 - 1 +7 chr1 2 3 - 1 +Actual + Chromosome Start End Strand Distance +0 chr1 2 3 - 1 +1 chr1 2 3 - 1 +2 chr1 2 3 - 1 +3 chr1 2 3 - 1 +4 chr1 2 3 - 1 +5 chr1 2 3 - 1 +6 chr1 2 3 - 1 + +Expected + Chromosome Start End Strand Distance +0 chr1 2 3 - 1 +1 chr1 2 3 - 1 +2 chr1 2 3 - 1 +3 chr1 2 3 - 1 +4 chr1 2 3 - 1 +5 chr1 2 3 - 1 +6 chr1 2 3 - 1 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=7, step=1) +Expected index +RangeIndex(start=0, stop=7, step=1) +index equal [ True True True True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpb4rtfltl/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpb4rtfltl/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +1 chr1 2 3 - 1 +2 chr1 2 3 - 1 +3 chr1 2 3 - 1 +4 chr1 2 3 - 1 +5 chr1 2 3 - 1 +6 chr1 2 3 - 1 +7 chr1 2 3 - 1 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 7 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 2 3 - 1 +1 chr1 2 3 - 1 +2 chr1 2 3 - 1 +3 chr1 2 3 - 1 +4 chr1 2 3 - 1 +5 chr1 2 3 - 1 +6 chr1 2 3 - 1 +df2 + Chromosome Start End Strand Distance +1 chr1 2 3 - 1 +2 chr1 2 3 - 1 +3 chr1 2 3 - 1 +4 chr1 2 3 - 1 +5 chr1 2 3 - 1 +6 chr1 2 3 - 1 +7 chr1 2 3 - 1 +Actual + Chromosome Start End Strand Distance +0 chr1 2 3 - 1 +1 chr1 2 3 - 1 +2 chr1 2 3 - 1 +3 chr1 2 3 - 1 +4 chr1 2 3 - 1 +5 chr1 2 3 - 1 +6 chr1 2 3 - 1 + +Expected + Chromosome Start End Strand Distance +0 chr1 2 3 - 1 +1 chr1 2 3 - 1 +2 chr1 2 3 - 1 +3 chr1 2 3 - 1 +4 chr1 2 3 - 1 +5 chr1 2 3 - 1 +6 chr1 2 3 - 1 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=7, step=1) +Expected index +RangeIndex(start=0, stop=7, step=1) +index equal [ True True True True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp3orkewpp/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp3orkewpp/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 2 | 3 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +df2 + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +Actual + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 + +Expected + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=1, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +index equal [ True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpg6i399qs/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpg6i399qs/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +1 chr1 2 3 + 1 +df2 + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +Actual + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +1 chr1 2 3 + 1 + +Expected + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=2, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp9i3lk6rp/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp9i3lk6rp/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +7 chr1 2 3 - 1 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 2 | 3 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 2 3 - 1 +df2 + Chromosome Start End Strand Distance +7 chr1 2 3 - 1 +Actual + Chromosome Start End Strand Distance +0 chr1 2 3 - 1 + +Expected + Chromosome Start End Strand Distance +0 chr1 2 3 - 1 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=1, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +index equal [ True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpvr7l545r/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpvr7l545r/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +1 chr1 2 3 + 1 +df2 + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +Actual + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +1 chr1 2 3 + 1 + +Expected + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=2, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpb2eth4jb/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpb2eth4jb/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpuqaym2kf/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpuqaym2kf/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +7 chr1 2 3 - 1 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 2 | 3 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 2 3 - 1 +df2 + Chromosome Start End Strand Distance +7 chr1 2 3 - 1 +Actual + Chromosome Start End Strand Distance +0 chr1 2 3 - 1 + +Expected + Chromosome Start End Strand Distance +0 chr1 2 3 - 1 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=1, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +index equal [ True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpg_s78f1o/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpg_s78f1o/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp_fr829dc/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp_fr829dc/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +1 chr1 2 3 + 1 +df2 + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +Actual + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +1 chr1 2 3 + 1 + +Expected + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=2, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpbjkch0co/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpbjkch0co/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +1 chr1 2 3 + 1 +df2 + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +Actual + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +1 chr1 2 3 + 1 + +Expected + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=2, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpagxq7dsm/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpagxq7dsm/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +1 chr1 2 3 + 1 +df2 + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +Actual + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +1 chr1 2 3 + 1 + +Expected + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=2, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpk9zyop79/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpk9zyop79/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +1 chr1 2 3 + 1 +df2 + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +Actual + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +1 chr1 2 3 + 1 + +Expected + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=2, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp3sz4tavk/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp3sz4tavk/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +7 chr1 2 3 - 1 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 2 | 3 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 2 3 - 1 +df2 + Chromosome Start End Strand Distance +7 chr1 2 3 - 1 +Actual + Chromosome Start End Strand Distance +0 chr1 2 3 - 1 + +Expected + Chromosome Start End Strand Distance +0 chr1 2 3 - 1 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=1, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +index equal [ True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpj3z9qyn1/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpj3z9qyn1/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp9i397zoc/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp9i397zoc/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpnwn0mpo4/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpnwn0mpo4/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 2 3 - 1 +1 chr1 2 3 - 1 +2 chr1 2 3 - 1 +3 chr1 2 3 - 1 +4 chr1 2 3 - 1 +5 chr1 2 3 - 1 +6 chr1 2 3 - 1 +7 chr1 2 3 - 1 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 8 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 2 3 - 1 +1 chr1 2 3 - 1 +2 chr1 2 3 - 1 +3 chr1 2 3 - 1 +4 chr1 2 3 - 1 +5 chr1 2 3 - 1 +6 chr1 2 3 - 1 +7 chr1 2 3 - 1 +df2 + Chromosome Start End Strand Distance +0 chr1 2 3 - 1 +1 chr1 2 3 - 1 +2 chr1 2 3 - 1 +3 chr1 2 3 - 1 +4 chr1 2 3 - 1 +5 chr1 2 3 - 1 +6 chr1 2 3 - 1 +7 chr1 2 3 - 1 +Actual + Chromosome Start End Strand Distance +0 chr1 2 3 - 1 +1 chr1 2 3 - 1 +2 chr1 2 3 - 1 +3 chr1 2 3 - 1 +4 chr1 2 3 - 1 +5 chr1 2 3 - 1 +6 chr1 2 3 - 1 +7 chr1 2 3 - 1 + +Expected + Chromosome Start End Strand Distance +0 chr1 2 3 - 1 +1 chr1 2 3 - 1 +2 chr1 2 3 - 1 +3 chr1 2 3 - 1 +4 chr1 2 3 - 1 +5 chr1 2 3 - 1 +6 chr1 2 3 - 1 +7 chr1 2 3 - 1 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=8, step=1) +Expected index +RangeIndex(start=0, stop=8, step=1) +index equal [ True True True True True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp9vtozgrb/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp9vtozgrb/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp5ctafzxj/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp5ctafzxj/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +1 chr1 2 3 + 1 +df2 + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +Actual + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +1 chr1 2 3 + 1 + +Expected + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=2, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpghq_ssyh/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpghq_ssyh/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpvy2ded3w/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpvy2ded3w/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +1 chr1 2 3 + 1 +df2 + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +Actual + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +1 chr1 2 3 + 1 + +Expected + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=2, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp1znlwy_5/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp1znlwy_5/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp3upkx5q5/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp3upkx5q5/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpxgruyr58/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpxgruyr58/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +1 chr1 2 3 + 1 +df2 + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +Actual + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +1 chr1 2 3 + 1 + +Expected + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=2, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp0u86acog/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp0u86acog/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +1 chr1 2 3 + 1 +df2 + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +Actual + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +1 chr1 2 3 + 1 + +Expected + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=2, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpb0be0ew4/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpb0be0ew4/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +1 chr1 2 3 + 1 +df2 + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +Actual + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +1 chr1 2 3 + 1 + +Expected + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=2, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpqfxdeft7/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpqfxdeft7/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +1 chr1 2 3 + 1 +df2 + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +Actual + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +1 chr1 2 3 + 1 + +Expected + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=2, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpfl60ryzn/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpfl60ryzn/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpga7vlrd3/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpga7vlrd3/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 2 3 - 1 +1 chr1 2 3 - 1 +2 chr1 2 3 - 1 +3 chr1 2 3 - 1 +4 chr1 2 3 - 1 +5 chr1 2 3 - 1 +6 chr1 2 3 - 1 +7 chr1 2 3 - 1 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 8 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 2 3 - 1 +1 chr1 2 3 - 1 +2 chr1 2 3 - 1 +3 chr1 2 3 - 1 +4 chr1 2 3 - 1 +5 chr1 2 3 - 1 +6 chr1 2 3 - 1 +7 chr1 2 3 - 1 +df2 + Chromosome Start End Strand Distance +0 chr1 2 3 - 1 +1 chr1 2 3 - 1 +2 chr1 2 3 - 1 +3 chr1 2 3 - 1 +4 chr1 2 3 - 1 +5 chr1 2 3 - 1 +6 chr1 2 3 - 1 +7 chr1 2 3 - 1 +Actual + Chromosome Start End Strand Distance +0 chr1 2 3 - 1 +1 chr1 2 3 - 1 +2 chr1 2 3 - 1 +3 chr1 2 3 - 1 +4 chr1 2 3 - 1 +5 chr1 2 3 - 1 +6 chr1 2 3 - 1 +7 chr1 2 3 - 1 + +Expected + Chromosome Start End Strand Distance +0 chr1 2 3 - 1 +1 chr1 2 3 - 1 +2 chr1 2 3 - 1 +3 chr1 2 3 - 1 +4 chr1 2 3 - 1 +5 chr1 2 3 - 1 +6 chr1 2 3 - 1 +7 chr1 2 3 - 1 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=8, step=1) +Expected index +RangeIndex(start=0, stop=8, step=1) +index equal [ True True True True True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpzaxeh81h/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpzaxeh81h/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpsyua0igs/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpsyua0igs/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp8w79xuln/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp8w79xuln/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +1 chr1 2 3 + 1 +df2 + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +Actual + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +1 chr1 2 3 + 1 + +Expected + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=2, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp57ls1qu8/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp57ls1qu8/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpn_fb0033/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpn_fb0033/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpwwb4904e/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpwwb4904e/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpo2mus0qj/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpo2mus0qj/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +1 chr1 2 3 - 1 +2 chr1 2 3 - 1 +3 chr1 2 3 - 1 +4 chr1 2 3 - 1 +5 chr1 2 3 - 1 +6 chr1 2 3 - 1 +7 chr1 2 3 - 1 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 7 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 2 3 - 1 +1 chr1 2 3 - 1 +2 chr1 2 3 - 1 +3 chr1 2 3 - 1 +4 chr1 2 3 - 1 +5 chr1 2 3 - 1 +6 chr1 2 3 - 1 +df2 + Chromosome Start End Strand Distance +1 chr1 2 3 - 1 +2 chr1 2 3 - 1 +3 chr1 2 3 - 1 +4 chr1 2 3 - 1 +5 chr1 2 3 - 1 +6 chr1 2 3 - 1 +7 chr1 2 3 - 1 +Actual + Chromosome Start End Strand Distance +0 chr1 2 3 - 1 +1 chr1 2 3 - 1 +2 chr1 2 3 - 1 +3 chr1 2 3 - 1 +4 chr1 2 3 - 1 +5 chr1 2 3 - 1 +6 chr1 2 3 - 1 + +Expected + Chromosome Start End Strand Distance +0 chr1 2 3 - 1 +1 chr1 2 3 - 1 +2 chr1 2 3 - 1 +3 chr1 2 3 - 1 +4 chr1 2 3 - 1 +5 chr1 2 3 - 1 +6 chr1 2 3 - 1 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=7, step=1) +Expected index +RangeIndex(start=0, stop=7, step=1) +index equal [ True True True True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp41kjgkzl/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp41kjgkzl/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +6 chr1 2 3 - 1 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 2 | 3 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 2 3 - 1 +df2 + Chromosome Start End Strand Distance +6 chr1 2 3 - 1 +Actual + Chromosome Start End Strand Distance +0 chr1 2 3 - 1 + +Expected + Chromosome Start End Strand Distance +0 chr1 2 3 - 1 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=1, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +index equal [ True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp_7m0yyd7/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp_7m0yyd7/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +1 chr1 2 3 - 1 +2 chr1 2 3 - 1 +3 chr1 2 3 - 1 +4 chr1 2 3 - 1 +5 chr1 2 3 - 1 +6 chr1 2 3 - 1 +7 chr1 2 3 - 1 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 7 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 2 3 - 1 +1 chr1 2 3 - 1 +2 chr1 2 3 - 1 +3 chr1 2 3 - 1 +4 chr1 2 3 - 1 +5 chr1 2 3 - 1 +6 chr1 2 3 - 1 +df2 + Chromosome Start End Strand Distance +1 chr1 2 3 - 1 +2 chr1 2 3 - 1 +3 chr1 2 3 - 1 +4 chr1 2 3 - 1 +5 chr1 2 3 - 1 +6 chr1 2 3 - 1 +7 chr1 2 3 - 1 +Actual + Chromosome Start End Strand Distance +0 chr1 2 3 - 1 +1 chr1 2 3 - 1 +2 chr1 2 3 - 1 +3 chr1 2 3 - 1 +4 chr1 2 3 - 1 +5 chr1 2 3 - 1 +6 chr1 2 3 - 1 + +Expected + Chromosome Start End Strand Distance +0 chr1 2 3 - 1 +1 chr1 2 3 - 1 +2 chr1 2 3 - 1 +3 chr1 2 3 - 1 +4 chr1 2 3 - 1 +5 chr1 2 3 - 1 +6 chr1 2 3 - 1 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=7, step=1) +Expected index +RangeIndex(start=0, stop=7, step=1) +index equal [ True True True True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp56lhepo7/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp56lhepo7/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +6 chr1 2 3 - 1 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 2 | 3 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 2 3 - 1 +df2 + Chromosome Start End Strand Distance +6 chr1 2 3 - 1 +Actual + Chromosome Start End Strand Distance +0 chr1 2 3 - 1 + +Expected + Chromosome Start End Strand Distance +0 chr1 2 3 - 1 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=1, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +index equal [ True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpkl6bf00y/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpkl6bf00y/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpyhhrm9ny/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpyhhrm9ny/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 2 | 3 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +df2 + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +Actual + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 + +Expected + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=1, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +index equal [ True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp5t544eod/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp5t544eod/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpb0yujrlk/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpb0yujrlk/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpigruizct/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpigruizct/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpf_seha_4/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpf_seha_4/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp8lxsrhz4/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp8lxsrhz4/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpybo_kb32/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpybo_kb32/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmprg1fr4ip/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmprg1fr4ip/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmprbp0rjrk/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmprbp0rjrk/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpqf9iseri/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpqf9iseri/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpfxn7a_1b/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpfxn7a_1b/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 2 | 3 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +df2 + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +Actual + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 + +Expected + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=1, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +index equal [ True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpus6mt50p/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpus6mt50p/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpv2ucwh3e/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpv2ucwh3e/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +1 chr1 2 3 - 1 +2 chr1 2 3 - 1 +3 chr1 2 3 - 1 +4 chr1 2 3 - 1 +5 chr1 2 3 - 1 +6 chr1 2 3 - 1 +7 chr1 2 3 - 1 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 8 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +1 chr1 2 3 - 1 +2 chr1 2 3 - 1 +3 chr1 2 3 - 1 +4 chr1 2 3 - 1 +5 chr1 2 3 - 1 +6 chr1 2 3 - 1 +7 chr1 2 3 - 1 +df2 + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +1 chr1 2 3 - 1 +2 chr1 2 3 - 1 +3 chr1 2 3 - 1 +4 chr1 2 3 - 1 +5 chr1 2 3 - 1 +6 chr1 2 3 - 1 +7 chr1 2 3 - 1 +Actual + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +1 chr1 2 3 - 1 +2 chr1 2 3 - 1 +3 chr1 2 3 - 1 +4 chr1 2 3 - 1 +5 chr1 2 3 - 1 +6 chr1 2 3 - 1 +7 chr1 2 3 - 1 + +Expected + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +1 chr1 2 3 - 1 +2 chr1 2 3 - 1 +3 chr1 2 3 - 1 +4 chr1 2 3 - 1 +5 chr1 2 3 - 1 +6 chr1 2 3 - 1 +7 chr1 2 3 - 1 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=8, step=1) +Expected index +RangeIndex(start=0, stop=8, step=1) +index equal [ True True True True True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpjiga39hi/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpjiga39hi/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 2 | 3 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +df2 + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +Actual + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 + +Expected + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=1, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +index equal [ True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp3n8uwqxh/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp3n8uwqxh/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpd702jdnn/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpd702jdnn/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +1 chr1 2 3 + 1 +df2 + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +Actual + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +1 chr1 2 3 + 1 + +Expected + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=2, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp6q74oyac/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp6q74oyac/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpq9eqawmj/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpq9eqawmj/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +1 chr1 2 3 + 1 +df2 + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +Actual + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +1 chr1 2 3 + 1 + +Expected + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=2, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpnqr2rzy0/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpnqr2rzy0/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +1 chr1 2 3 + 1 +df2 + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +Actual + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +1 chr1 2 3 + 1 + +Expected + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=2, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp6ejz8fnn/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp6ejz8fnn/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +1 chr1 2 3 + 1 +df2 + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +Actual + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +1 chr1 2 3 + 1 + +Expected + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=2, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp5uiaylm7/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp5uiaylm7/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +1 chr1 2 3 + 1 +df2 + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +Actual + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +1 chr1 2 3 + 1 + +Expected + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=2, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmppjqwmmr6/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmppjqwmmr6/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +1 chr1 2 3 + 1 +df2 + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +Actual + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +1 chr1 2 3 + 1 + +Expected + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=2, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp70o8z4lz/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp70o8z4lz/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +1 chr1 2 3 + 1 +df2 + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +Actual + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +1 chr1 2 3 + 1 + +Expected + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=2, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp5gcma_9f/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp5gcma_9f/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmps3qqto9v/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmps3qqto9v/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +1 chr1 2 3 + 1 +df2 + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +Actual + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +1 chr1 2 3 + 1 + +Expected + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=2, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp7_gk8yla/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp7_gk8yla/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +1 chr1 2 3 + 1 +df2 + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +Actual + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +1 chr1 2 3 + 1 + +Expected + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=2, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpkujpu1uq/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpkujpu1uq/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +1 chr1 2 3 + 1 +df2 + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +Actual + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +1 chr1 2 3 + 1 + +Expected + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=2, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpl38nbwx1/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpl38nbwx1/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +1 chr1 2 3 + 1 +df2 + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +Actual + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +1 chr1 2 3 + 1 + +Expected + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=2, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpt5jszatm/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpt5jszatm/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +1 chr1 2 3 + 1 +df2 + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +Actual + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +1 chr1 2 3 + 1 + +Expected + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=2, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpwyz1jobv/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpwyz1jobv/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp3zbelqvj/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp3zbelqvj/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpw0r078t3/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpw0r078t3/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 1 3 + 1 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 1 | 3 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 1 3 + 1 +df2 + Chromosome Start End Strand Distance +0 chr1 1 3 + 1 +Actual + Chromosome Start End Strand Distance +0 chr1 1 3 + 1 + +Expected + Chromosome Start End Strand Distance +0 chr1 1 3 + 1 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=1, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +index equal [ True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpqnr_77sr/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpqnr_77sr/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 2 | 3 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +df2 + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +Actual + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 + +Expected + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=1, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +index equal [ True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpegaehh4l/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpegaehh4l/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp6l3vg2q4/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp6l3vg2q4/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +1 chr1 2 3 - 1 +2 chr1 2 3 - 1 +3 chr1 2 3 - 1 +4 chr1 2 3 - 1 +5 chr1 2 3 - 1 +6 chr1 2 3 - 1 +7 chr1 2 3 - 1 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 8 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +1 chr1 2 3 - 1 +2 chr1 2 3 - 1 +3 chr1 2 3 - 1 +4 chr1 2 3 - 1 +5 chr1 2 3 - 1 +6 chr1 2 3 - 1 +7 chr1 2 3 - 1 +df2 + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +1 chr1 2 3 - 1 +2 chr1 2 3 - 1 +3 chr1 2 3 - 1 +4 chr1 2 3 - 1 +5 chr1 2 3 - 1 +6 chr1 2 3 - 1 +7 chr1 2 3 - 1 +Actual + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +1 chr1 2 3 - 1 +2 chr1 2 3 - 1 +3 chr1 2 3 - 1 +4 chr1 2 3 - 1 +5 chr1 2 3 - 1 +6 chr1 2 3 - 1 +7 chr1 2 3 - 1 + +Expected + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +1 chr1 2 3 - 1 +2 chr1 2 3 - 1 +3 chr1 2 3 - 1 +4 chr1 2 3 - 1 +5 chr1 2 3 - 1 +6 chr1 2 3 - 1 +7 chr1 2 3 - 1 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=8, step=1) +Expected index +RangeIndex(start=0, stop=8, step=1) +index equal [ True True True True True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpy1j7h0u3/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpy1j7h0u3/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 2 | 3 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +df2 + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +Actual + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 + +Expected + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=1, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +index equal [ True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp7b67bkw1/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp7b67bkw1/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpfjlu7r3o/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpfjlu7r3o/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +1 chr1 2 3 + 1 +df2 + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +Actual + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +1 chr1 2 3 + 1 + +Expected + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=2, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmps68nuo8a/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmps68nuo8a/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpmbxnlfx3/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpmbxnlfx3/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpvijldsgw/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpvijldsgw/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 1 3 + 1 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 1 | 3 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 1 3 + 1 +df2 + Chromosome Start End Strand Distance +0 chr1 1 3 + 1 +Actual + Chromosome Start End Strand Distance +0 chr1 1 3 + 1 + +Expected + Chromosome Start End Strand Distance +0 chr1 1 3 + 1 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=1, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +index equal [ True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpzxyvp7v6/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpzxyvp7v6/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 2 | 3 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +df2 + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +Actual + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 + +Expected + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=1, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +index equal [ True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmptfn_b390/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmptfn_b390/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp4mip79zw/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp4mip79zw/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +1 chr1 2 3 - 1 +2 chr1 2 3 - 1 +3 chr1 2 3 - 1 +4 chr1 2 3 - 1 +5 chr1 2 3 - 1 +6 chr1 2 3 - 1 +7 chr1 2 3 - 1 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 8 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +1 chr1 2 3 - 1 +2 chr1 2 3 - 1 +3 chr1 2 3 - 1 +4 chr1 2 3 - 1 +5 chr1 2 3 - 1 +6 chr1 2 3 - 1 +7 chr1 2 3 - 1 +df2 + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +1 chr1 2 3 - 1 +2 chr1 2 3 - 1 +3 chr1 2 3 - 1 +4 chr1 2 3 - 1 +5 chr1 2 3 - 1 +6 chr1 2 3 - 1 +7 chr1 2 3 - 1 +Actual + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +1 chr1 2 3 - 1 +2 chr1 2 3 - 1 +3 chr1 2 3 - 1 +4 chr1 2 3 - 1 +5 chr1 2 3 - 1 +6 chr1 2 3 - 1 +7 chr1 2 3 - 1 + +Expected + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +1 chr1 2 3 - 1 +2 chr1 2 3 - 1 +3 chr1 2 3 - 1 +4 chr1 2 3 - 1 +5 chr1 2 3 - 1 +6 chr1 2 3 - 1 +7 chr1 2 3 - 1 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=8, step=1) +Expected index +RangeIndex(start=0, stop=8, step=1) +index equal [ True True True True True True True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpxle2oe7t/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpxle2oe7t/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 2 | 3 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +df2 + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +Actual + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 + +Expected + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=1, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +index equal [ True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp1lfmw4ht/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp1lfmw4ht/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 1 | 2 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 +df2 + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 +Actual + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 + +Expected + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=1, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +index equal [ True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp0982qt7g/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp0982qt7g/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +7 chr1 1 2 - 2 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 1 | 2 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 1 2 - 2 +df2 + Chromosome Start End Strand Distance +7 chr1 1 2 - 2 +Actual + Chromosome Start End Strand Distance +0 chr1 1 2 - 2 + +Expected + Chromosome Start End Strand Distance +0 chr1 1 2 - 2 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=1, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +index equal [ True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp446h90gz/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp446h90gz/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 1 | 2 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 +df2 + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 +Actual + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 + +Expected + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=1, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +index equal [ True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp718c7xib/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp718c7xib/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 1 | 2 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 +df2 + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 +Actual + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 + +Expected + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=1, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +index equal [ True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpjnq3t96j/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpjnq3t96j/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 1 | 2 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 +df2 + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 +Actual + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 + +Expected + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=1, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +index equal [ True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmps8ozrzqe/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmps8ozrzqe/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpdjj7kj44/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpdjj7kj44/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp7ds9l7sp/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp7ds9l7sp/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpget_69lg/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpget_69lg/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 1 2 - 2 +6 chr1 2 3 - 1 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 1 | 2 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +1 chr1 1 2 - 2 +0 chr1 2 3 - 1 +df2 + Chromosome Start End Strand Distance +0 chr1 1 2 - 2 +6 chr1 2 3 - 1 +Actual + Chromosome Start End Strand Distance +0 chr1 1 2 - 2 +1 chr1 2 3 - 1 + +Expected + Chromosome Start End Strand Distance +0 chr1 1 2 - 2 +1 chr1 2 3 - 1 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=2, step=1) +Expected index +RangeIndex(start=0, stop=2, step=1) +index equal [ True True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpq3h8rktm/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpq3h8rktm/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +1 chr1 2 3 + 1 +df2 + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +Actual + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +1 chr1 2 3 + 1 + +Expected + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=2, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp_b28ae9v/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp_b28ae9v/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +1 chr1 2 3 + 1 +df2 + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +Actual + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +1 chr1 2 3 + 1 + +Expected + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=2, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpt5nsi7ci/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpt5nsi7ci/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +1 chr1 2 3 + 1 +df2 + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +Actual + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +1 chr1 2 3 + 1 + +Expected + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=2, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp96bbwkfe/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp96bbwkfe/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +1 chr1 2 3 + 1 +df2 + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +Actual + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +1 chr1 2 3 + 1 + +Expected + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=2, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp4p7z9afs/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp4p7z9afs/f2.bed) +bedtools bedtools bedtools bedtools bedtools +Empty DataFrame +Columns: [Chromosome, Start, End, Strand, Distance] +Index: [] +result result result result result +Empty PyRanges +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpisr06cl8/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpisr06cl8/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 1 | 2 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 +df2 + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 +Actual + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 + +Expected + Chromosome Start End Strand Distance +0 chr1 1 2 + 2 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=1, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +index equal [ True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmp38098ea0/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmp38098ea0/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +7 chr1 1 2 - 2 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 1 | 2 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 1 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 1 2 - 2 +df2 + Chromosome Start End Strand Distance +7 chr1 1 2 - 2 +Actual + Chromosome Start End Strand Distance +0 chr1 1 2 - 2 + +Expected + Chromosome Start End Strand Distance +0 chr1 1 2 - 2 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=1, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +index equal [ True] +---------------------------------------------------------------------------------------------------- +cmd cmd cmd cmd cmd +bedtools closest -k 2 -D a -S -io -t last -a <(sort -k1,1 -k2,2n /tmp/tmpsrh2q8e7/f1.bed) -b <(sort -k1,1 -k2,2n /tmp/tmpsrh2q8e7/f2.bed) +bedtools bedtools bedtools bedtools bedtools + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +result result result result result ++--------------+-----------+-----------+------------+-----------+-------+ +| Chromosome | Start | End | Name | Score | +7 | +| (category) | (int64) | (int64) | (object) | (int64) | ... | +|--------------+-----------+-----------+------------+-----------+-------| +| chr1 | 2 | 3 | a | 0 | ... | +| chr1 | 2 | 3 | a | 0 | ... | ++--------------+-----------+-----------+------------+-----------+-------+ +Stranded PyRanges object has 2 rows and 12 columns from 1 chromosomes. +For printing, the PyRanges was sorted on Chromosome and Strand. +7 hidden columns: Strand, Start_b, End_b, Name_b, Score_b, Strand_b, Distance +---------------------------------------------------------------------------------------------------- +df1 + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +1 chr1 2 3 + 1 +df2 + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +Actual + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 +1 chr1 2 3 + 1 + +Expected + Chromosome Start End Strand Distance +0 chr1 2 3 + 1 + +Actual dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Expected dtypes +Chromosome object +Start int64 +End int64 +Strand object +Distance int64 +dtype: object +Actual index +RangeIndex(start=0, stop=2, step=1) +Expected index +RangeIndex(start=0, stop=1, step=1) +----------------------------- Captured stderr call ----------------------------- +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr10 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr8 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr10 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr10 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr16 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr3 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr14 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr2 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr21 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr21 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr10 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr10 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr20 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr10 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr10 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr20 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr10 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr10 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr20 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr10 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr10 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr17 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr17 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr17 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr17 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chrM than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr2 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr2 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr2 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr2 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr2 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr2 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr12 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr18 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr6 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr8 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chrM than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr6 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr8 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chrM than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr13 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr6 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr18 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr6 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr2 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr2 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr11 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr11 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr2 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr2 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr19 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr22 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr2 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr2 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr2 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr2 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr2 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr2 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr19 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr18 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr19 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr7 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chrY than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr6 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr7 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr7 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr7 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr7 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr7 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr19 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chrY than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr19 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr19 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr15 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr15 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr15 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr15 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr2 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr3 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr2 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chrM than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chrM than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chrM than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chrM than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chrM than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chrM than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chrM than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chrM than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr15 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr20 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr22 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr20 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr20 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +Warning: Fewer hits (1) found on chr1 than requested (2). It is likely that there are fewer total records on that chromosome than requested. +---------------------------------- Hypothesis ---------------------------------- +WARNING: Hypothesis has spent more than five minutes working to shrink a failing example, and stopped because it is making very slow progress. When you re-run your tests, shrinking will resume and may take this long before aborting again. +PLEASE REPORT THIS if you can provide a reproducing example, so that we can improve shrinking performance for everyone. =============================== warnings summary =============================== tests/conftest.py:83 /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/conftest.py:83: SyntaxWarning: invalid escape sequence '\s' sep="\s+", -pyranges/__init__.py:18: 43 warnings +pyranges/__init__.py:18: 21 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/__init__.py:18: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html import pkg_resources -tests/test_binary.py:118: 42 warnings +tests/test_binary.py:118: 20 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_binary.py:118: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) -tests/test_binary.py:139: 42 warnings +tests/test_binary.py:139: 20 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_binary.py:139: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) -tests/test_binary.py:160: 42 warnings +tests/test_binary.py:160: 20 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_binary.py:160: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) -tests/test_binary.py:187: 42 warnings +tests/test_binary.py:187: 20 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_binary.py:187: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) -tests/test_binary.py:212: 42 warnings +tests/test_binary.py:212: 20 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_binary.py:212: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) -tests/test_binary.py:291: 42 warnings +tests/test_binary.py:291: 20 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_binary.py:291: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) -tests/test_binary.py:329: 42 warnings +tests/test_binary.py:329: 20 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_binary.py:329: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) -tests/test_binary.py:368: 42 warnings +tests/test_binary.py:368: 20 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_binary.py:368: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) -tests/test_binary.py:392: 42 warnings +tests/test_binary.py:392: 20 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_binary.py:392: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) -tests/test_binary.py:426: 42 warnings +tests/test_binary.py:426: 20 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_binary.py:426: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) -tests/test_binary.py:516: 42 warnings +tests/test_binary.py:516: 20 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_binary.py:516: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) -tests/test_binary.py:579: 42 warnings +tests/test_binary.py:579: 20 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_binary.py:579: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) -pyranges/methods/init.py:60: 210 warnings +pyranges/methods/init.py:60: 100 warnings .pybuild/cpython3_3.13_pyranges/build/tests/test_change_chromosome_custom.py: 2 warnings .pybuild/cpython3_3.13_pyranges/build/tests/test_concat.py: 8 warnings .pybuild/cpython3_3.13_pyranges/build/tests/test_count_overlaps.py: 1 warning .pybuild/cpython3_3.13_pyranges/build/tests/data/test_data.py: 9 warnings -.pybuild/cpython3_3.13_pyranges/build/tests/test_do_not_error.py: 160544 warnings -.pybuild/cpython3_3.13_pyranges/build/tests/test_binary.py: 159291 warnings -.pybuild/cpython3_3.13_pyranges/build/tests/test_io.py: 4 warnings -.pybuild/cpython3_3.13_pyranges/build/tests/windows/test_windows.py: 2 warnings +.pybuild/cpython3_3.13_pyranges/build/tests/test_do_not_error.py: 159272 warnings +.pybuild/cpython3_3.13_pyranges/build/tests/test_binary.py: 159474 warnings .pybuild/cpython3_3.13_pyranges/build/tests/test_getset_attr.py: 3 warnings -.pybuild/cpython3_3.13_pyranges/build/tests/test_stranded.py: 6 warnings +.pybuild/cpython3_3.13_pyranges/build/tests/test_io.py: 4 warnings .pybuild/cpython3_3.13_pyranges/build/tests/test_pickle.py: 1 warning +.pybuild/cpython3_3.13_pyranges/build/tests/test_stranded.py: 6 warnings +.pybuild/cpython3_3.13_pyranges/build/tests/windows/test_windows.py: 2 warnings .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py: 358 warnings -.pybuild/cpython3_3.13_pyranges/build/tests/test_unary.py: 24091 warnings +.pybuild/cpython3_3.13_pyranges/build/tests/test_unary.py: 24840 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/methods/init.py:60: FutureWarning: The default of observed=False is deprecated and will be changed to True in a future version of pandas. Pass observed=False to retain current behavior or observed=True to adopt the future default and silence this warning. return {k: v for k, v in df.groupby(grpby_key)} -pyranges/methods/init.py:189: 168 warnings +pyranges/methods/init.py:189: 80 warnings .pybuild/cpython3_3.13_pyranges/build/tests/test_change_chromosome_custom.py: 1 warning .pybuild/cpython3_3.13_pyranges/build/tests/test_concat.py: 7 warnings -.pybuild/cpython3_3.13_pyranges/build/tests/test_do_not_error.py: 4447 warnings +.pybuild/cpython3_3.13_pyranges/build/tests/test_do_not_error.py: 4446 warnings .pybuild/cpython3_3.13_pyranges/build/tests/test_binary.py: 2000 warnings .pybuild/cpython3_3.13_pyranges/build/tests/test_stranded.py: 2 warnings -.pybuild/cpython3_3.13_pyranges/build/tests/test_unary.py: 6615 warnings +.pybuild/cpython3_3.13_pyranges/build/tests/test_unary.py: 6665 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/methods/init.py:189: FutureWarning: The default of observed=False is deprecated and will be changed to True in a future version of pandas. Pass observed=False to retain current behavior or observed=True to adopt the future default and silence this warning. empty_removed = df.groupby("Chromosome") -tests/test_do_not_error.py:46: 42 warnings +tests/test_do_not_error.py:46: 20 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_do_not_error.py:46: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) -tests/test_unary.py:35: 42 warnings +tests/test_unary.py:35: 20 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_unary.py:35: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) -tests/test_unary.py:100: 42 warnings +tests/test_unary.py:100: 20 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_unary.py:100: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) -tests/test_unary.py:163: 42 warnings +tests/test_unary.py:163: 20 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_unary.py:163: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) -tests/test_unary.py:205: 42 warnings +tests/test_unary.py:205: 20 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_unary.py:205: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) -tests/test_unary.py:234: 42 warnings +tests/test_unary.py:234: 20 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_unary.py:234: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) -tests/test_unary.py:272: 42 warnings +tests/test_unary.py:272: 20 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_unary.py:272: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) -tests/test_unary.py:287: 42 warnings +tests/test_unary.py:287: 20 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_unary.py:287: HypothesisDeprecationWarning: The return_value health check is deprecated, because this is always an error. @settings( -tests/test_unary.py:315: 42 warnings +tests/test_unary.py:315: 20 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/tests/test_unary.py:315: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) -.pybuild/cpython3_3.13_pyranges/build/tests/test_concat.py::test_concat_unstranded_stranded - /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/methods/concat.py:47: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[NaN, NaN, NaN, '+', '-'] - Categories (3, object): ['+', '-', '.']' has dtype incompatible with category, please explicitly cast to a compatible dtype first. - v.loc[:, "Strand"] = type_v.cat.add_categories(["."]) - .pybuild/cpython3_3.13_pyranges/build/tests/test_concat.py::test_concat_stranded_unstranded /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/methods/concat.py:47: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['+', '+', '-', NaN, NaN] Categories (3, object): ['+', '-', '.']' has dtype incompatible with category, please explicitly cast to a compatible dtype first. v.loc[:, "Strand"] = type_v.cat.add_categories(["."]) .pybuild/cpython3_3.13_pyranges/build/tests/test_concat.py: 1 warning -.pybuild/cpython3_3.13_pyranges/build/tests/test_do_not_error.py: 3078 warnings +.pybuild/cpython3_3.13_pyranges/build/tests/test_do_not_error.py: 3042 warnings .pybuild/cpython3_3.13_pyranges/build/tests/test_stranded.py: 2 warnings .pybuild/cpython3_3.13_pyranges/build/tests/test_genomicfeatures.py: 119 warnings -.pybuild/cpython3_3.13_pyranges/build/tests/test_unary.py: 5615 warnings +.pybuild/cpython3_3.13_pyranges/build/tests/test_unary.py: 5665 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/methods/init.py:187: FutureWarning: The default of observed=False is deprecated and will be changed to True in a future version of pandas. Pass observed=False to retain current behavior or observed=True to adopt the future default and silence this warning. empty_removed = df.groupby(["Chromosome", "Strand"]) -.pybuild/cpython3_3.13_pyranges/build/tests/test_do_not_error.py: 7358 warnings -.pybuild/cpython3_3.13_pyranges/build/tests/test_binary.py: 15629 warnings -.pybuild/cpython3_3.13_pyranges/build/tests/test_unary.py: 17454 warnings +.pybuild/cpython3_3.13_pyranges/build/tests/test_concat.py::test_concat_unstranded_stranded + /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/methods/concat.py:47: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[NaN, NaN, NaN, '+', '-'] + Categories (3, object): ['+', '-', '.']' has dtype incompatible with category, please explicitly cast to a compatible dtype first. + v.loc[:, "Strand"] = type_v.cat.add_categories(["."]) + +.pybuild/cpython3_3.13_pyranges/build/tests/test_do_not_error.py: 7598 warnings +.pybuild/cpython3_3.13_pyranges/build/tests/test_binary.py: 15120 warnings +.pybuild/cpython3_3.13_pyranges/build/tests/test_unary.py: 18352 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/tostring2.py:31: FutureWarning: The behavior of DataFrame concatenation with empty or all-NA entries is deprecated. In a future version, this will no longer exclude empty or all-NA columns when determining the result dtypes. To retain the old behavior, exclude the relevant entries before the concat operation. df = pd.concat([plus, minus]) -.pybuild/cpython3_3.13_pyranges/build/tests/test_do_not_error.py: 1565 warnings +.pybuild/cpython3_3.13_pyranges/build/tests/test_do_not_error.py: 1455 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build/pyranges/pyranges.py:3779: FutureWarning: The behavior of Series.replace (and DataFrame.replace) with CategoricalDtype is deprecated. In a future version, replace will only be used for cases that preserve the categories. To change the categories, use ser.cat.rename_categories instead. other.Strand = other.Strand.replace({"+": "-", "-": "+"}) @@ -2992,25 +36139,28 @@ for _, gdf in natsorted(df.groupby(groupby)): -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html -=============== 531 passed, 413715 warnings in 722.40s (0:12:02) =============== +=========================== short test summary info ============================ +FAILED tests/test_binary.py::test_k_nearest[None-False-opposite-last] - Value... +========= 1 failed, 530 passed, 413275 warnings in 2289.22s (0:38:09) ========== +E: pybuild pybuild:389: test: plugin distutils failed with: exit code=1: cd /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.13_pyranges/build; python3.13 -m pytest -v -n 20 I: pybuild pybuild:308: mkdir -pv /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges && cp -av /build/reproducible-path/pyranges-0.0.111+ds/tests/*.bed /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests && cp -av /build/reproducible-path/pyranges-0.0.111+ds/tests/test_data /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests && cp -av /build/reproducible-path/pyranges-0.0.111+ds/tests/data /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests && cp -av /build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges '/build/reproducible-path/pyranges-0.0.111+ds/tests/chip_10.bed' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/chip_10.bed' '/build/reproducible-path/pyranges-0.0.111+ds/tests/f1.bed' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/f1.bed' '/build/reproducible-path/pyranges-0.0.111+ds/tests/f2.bed' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/f2.bed' '/build/reproducible-path/pyranges-0.0.111+ds/tests/test_data' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_data' -'/build/reproducible-path/pyranges-0.0.111+ds/tests/test_data/test_sorted.bam' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_data/test_sorted.bam' -'/build/reproducible-path/pyranges-0.0.111+ds/tests/test_data/test_sorted.bam.bai' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_data/test_sorted.bam.bai' '/build/reproducible-path/pyranges-0.0.111+ds/tests/test_data/ensembl.gtf' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_data/ensembl.gtf' '/build/reproducible-path/pyranges-0.0.111+ds/tests/test_data/gencode.gff3' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_data/gencode.gff3' '/build/reproducible-path/pyranges-0.0.111+ds/tests/test_data/ucsc_df_to_parse.txt' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_data/ucsc_df_to_parse.txt' +'/build/reproducible-path/pyranges-0.0.111+ds/tests/test_data/test_sorted.bam' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_data/test_sorted.bam' +'/build/reproducible-path/pyranges-0.0.111+ds/tests/test_data/test_sorted.bam.bai' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_data/test_sorted.bam.bai' '/build/reproducible-path/pyranges-0.0.111+ds/tests/data' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/data' '/build/reproducible-path/pyranges-0.0.111+ds/tests/data/test_data.py' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/data/test_data.py' -'/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/control.bam' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/example_data/control.bam' -'/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/control.bam.bai' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/example_data/control.bam.bai' -'/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/exons.bed' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/example_data/exons.bed' +'/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/chipseq_background.bed' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/example_data/chipseq_background.bed' '/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/ensembl.gtf' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/example_data/ensembl.gtf' '/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/ucsc_human.bed.gz' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/example_data/ucsc_human.bed.gz' -'/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/chipseq_background.bed' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/example_data/chipseq_background.bed' +'/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/aorta.bed' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/example_data/aorta.bed' +'/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/ensembl_human.gtf.gz' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/example_data/ensembl_human.gtf.gz' +'/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/exons.bed' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/example_data/exons.bed' '/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/f2.bed' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/example_data/f2.bed' '/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/bw.bw' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/example_data/bw.bw' '/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/f1.bed' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/example_data/f1.bed' @@ -3018,1250 +36168,1250 @@ '/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/lamina.bed' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/example_data/lamina.bed' '/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/gencode_human.gtf.gz' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/example_data/gencode_human.gtf.gz' '/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/chipseq.bed' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/example_data/chipseq.bed' -'/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/aorta.bed' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/example_data/aorta.bed' -'/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/ensembl_human.gtf.gz' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/example_data/ensembl_human.gtf.gz' '/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/chromsizes.bed' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/example_data/chromsizes.bed' '/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/aorta2.bed' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/example_data/aorta2.bed' -I: pybuild base:311: cd /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build; python3.12 -m pytest -v -n 42 +'/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/control.bam' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/example_data/control.bam' +'/build/reproducible-path/pyranges-0.0.111+ds/pyranges/example_data/control.bam.bai' -> '/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/example_data/control.bam.bai' +I: pybuild base:311: cd /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build; python3.12 -m pytest -v -n 20 ============================= test session starts ============================== platform linux -- Python 3.12.8, pytest-8.3.4, pluggy-1.5.0 -- /usr/bin/python3.12 cachedir: .pytest_cache hypothesis profile 'default' -> database=DirectoryBasedExampleDatabase(PosixPath('/build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/.hypothesis/examples')) rootdir: /build/reproducible-path/pyranges-0.0.111+ds -plugins: hypothesis-6.122.1, typeguard-4.4.1, xdist-3.6.1 -created: 42/42 workers -42 workers [531 items] +plugins: hypothesis-6.122.1, xdist-3.6.1, typeguard-4.4.1 +created: 20/20 workers +20 workers [531 items] scheduling tests via LoadScheduling -tests/data/test_data.py::test_all_data -tests/test_binary.py::test_overlap[same] -tests/test_binary.py::test_set_union[False] -tests/test_binary.py::test_nearest[None-False-same] -tests/test_binary.py::test_intersect[same] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain58-method_chain58] -tests/test_binary.py::test_nearest[downstream-False-same] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain43-method_chain43] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain34-method_chain34] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain28-method_chain28] -tests/test_binary.py::test_nearest[downstream-True-same] -tests/test_binary.py::test_nearest[upstream-False-same] -tests/test_binary.py::test_k_nearest[upstream-True-same-last] -tests/test_binary.py::test_join[opposite] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain13-method_chain13] -tests/test_binary.py::test_nearest[upstream-True-same] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain25-method_chain25] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain52-method_chain52] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain37-method_chain37] -tests/test_change_chromosome_custom.py::test_change_chromosomes -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain22-method_chain22] -tests/test_binary.py::test_k_nearest[None-False-same-last] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain25-method_chain25] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain31-method_chain31] tests/test_binary.py::test_coverage[same] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain4-method_chain4] -tests/test_binary.py::test_subtraction[opposite] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain40-method_chain40] -tests/test_binary.py::test_k_nearest[downstream-False-same-last] +tests/test_binary.py::test_nearest[downstream-True-same] +tests/test_binary.py::test_jaccard[same] +tests/test_change_chromosome_custom.py::test_change_chromosomes +tests/test_binary.py::test_nearest[None-True-same] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain13-method_chain13] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain43-method_chain43] +tests/test_binary.py::test_overlap[same] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain7-method_chain7] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain19-method_chain19] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain10-method_chain10] +tests/test_binary.py::test_nearest[upstream-True-same] +tests/data/test_data.py::test_all_data +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain49-method_chain49] tests/test_binary.py::test_k_nearest[upstream-False-same-last] -tests/test_concat.py::test_concat_unstranded_stranded -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain16-method_chain16] -tests/test_binary.py::test_k_nearest[None-True-same-last] +tests/test_binary.py::test_k_nearest[downstream-False-same-last] +tests/test_binary.py::test_k_nearest[None-False-same-last] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain1-method_chain1] -tests/test_binary.py::test_nearest[None-True-same] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain46-method_chain46] -tests/test_binary.py::test_k_nearest[downstream-True-same-last] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain49-method_chain49] -tests/test_binary.py::test_jaccard[same] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain7-method_chain7] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain31-method_chain31] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain55-method_chain55] -[gw20] [ 0%] PASSED tests/test_change_chromosome_custom.py::test_change_chromosomes +[gw10] [ 0%] PASSED tests/test_change_chromosome_custom.py::test_change_chromosomes tests/test_concat.py::test_concat_stranded_unstranded -[gw21] [ 0%] PASSED tests/test_concat.py::test_concat_unstranded_stranded -tests/test_count_overlaps.py::test_strand_vs_strand_same -[gw20] [ 0%] PASSED tests/test_concat.py::test_concat_stranded_unstranded +[gw10] [ 0%] PASSED tests/test_concat.py::test_concat_stranded_unstranded tests/test_concat.py::test_concat_unstranded_unstranded -[gw20] [ 0%] PASSED tests/test_concat.py::test_concat_unstranded_unstranded -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain61-method_chain61] -[gw21] [ 0%] PASSED tests/test_count_overlaps.py::test_strand_vs_strand_same -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain0-method_chain0] -[gw0] [ 1%] PASSED tests/data/test_data.py::test_all_data +[gw10] [ 0%] PASSED tests/test_concat.py::test_concat_unstranded_unstranded +tests/test_concat.py::test_concat_unstranded_stranded +[gw10] [ 0%] PASSED tests/test_concat.py::test_concat_unstranded_stranded +tests/test_count_overlaps.py::test_strand_vs_strand_same +[gw0] [ 0%] PASSED tests/data/test_data.py::test_all_data tests/test_binary.py::test_set_intersect[False] -[gw33] [ 1%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain31-method_chain31] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain32-method_chain32] -[gw27] [ 1%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain16-method_chain16] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain17-method_chain17] -[gw32] [ 1%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain34-method_chain34] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain35-method_chain35] -[gw30] [ 1%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain25-method_chain25] -[gw37] [ 2%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain43-method_chain43] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain44-method_chain44] +[gw10] [ 1%] PASSED tests/test_count_overlaps.py::test_strand_vs_strand_same +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain0-method_chain0] +[gw14] [ 1%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain25-method_chain25] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain26-method_chain26] -[gw34] [ 2%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain46-method_chain46] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain47-method_chain47] -[gw29] [ 2%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain22-method_chain22] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain23-method_chain23] -[gw31] [ 2%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain28-method_chain28] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain29-method_chain29] -[gw20] [ 2%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain61-method_chain61] -[gw28] [ 3%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain19-method_chain19] -[gw41] [ 3%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain58-method_chain58] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain20-method_chain20] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain59-method_chain59] -[gw26] [ 3%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain13-method_chain13] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain62-method_chain62] -[gw23] [ 3%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain4-method_chain4] +[gw17] [ 1%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain43-method_chain43] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain44-method_chain44] +[gw13] [ 1%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain13-method_chain13] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain14-method_chain14] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain5-method_chain5] -[gw25] [ 3%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain10-method_chain10] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain11-method_chain11] -[gw40] [ 3%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain55-method_chain55] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain56-method_chain56] -[gw24] [ 4%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain7-method_chain7] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain8-method_chain8] -[gw35] [ 4%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain37-method_chain37] -[gw39] [ 4%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain52-method_chain52] +[gw16] [ 1%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain31-method_chain31] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain32-method_chain32] +[gw15] [ 2%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain19-method_chain19] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain20-method_chain20] +[gw18] [ 2%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain37-method_chain37] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain38-method_chain38] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain53-method_chain53] -[gw22] [ 4%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain1-method_chain1] +[gw11] [ 2%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain1-method_chain1] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain2-method_chain2] -[gw38] [ 4%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain49-method_chain49] +[gw12] [ 2%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain7-method_chain7] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain8-method_chain8] +[gw19] [ 2%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain49-method_chain49] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain50-method_chain50] -[gw21] [ 5%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain0-method_chain0] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain64-method_chain64] -[gw27] [ 5%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain17-method_chain17] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain18-method_chain18] -[gw33] [ 5%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain32-method_chain32] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain33-method_chain33] -[gw36] [ 5%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain40-method_chain40] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain41-method_chain41] -[gw37] [ 5%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain44-method_chain44] +[gw10] [ 3%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain0-method_chain0] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain55-method_chain55] +[gw17] [ 3%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain44-method_chain44] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain45-method_chain45] -[gw34] [ 6%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain47-method_chain47] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain48-method_chain48] -[gw28] [ 6%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain20-method_chain20] +[gw16] [ 3%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain32-method_chain32] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain33-method_chain33] +[gw15] [ 3%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain20-method_chain20] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain21-method_chain21] -[gw31] [ 6%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain29-method_chain29] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain30-method_chain30] -[gw29] [ 6%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain23-method_chain23] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain24-method_chain24] -[gw30] [ 6%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain26-method_chain26] +[gw14] [ 3%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain26-method_chain26] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain27-method_chain27] -[gw20] [ 6%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain62-method_chain62] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain63-method_chain63] -[gw41] [ 7%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain59-method_chain59] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain60-method_chain60] -[gw25] [ 7%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain11-method_chain11] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain12-method_chain12] -[gw26] [ 7%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain14-method_chain14] +[gw13] [ 3%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain14-method_chain14] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain15-method_chain15] -[gw40] [ 7%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain56-method_chain56] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain57-method_chain57] -[gw32] [ 7%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain35-method_chain35] -[gw24] [ 8%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain8-method_chain8] +[gw11] [ 4%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain2-method_chain2] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain3-method_chain3] +[gw12] [ 4%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain8-method_chain8] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain9-method_chain9] +[gw17] [ 4%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain45-method_chain45] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain46-method_chain46] +[gw10] [ 4%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain55-method_chain55] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain56-method_chain56] +[gw18] [ 4%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain38-method_chain38] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain39-method_chain39] +[gw19] [ 5%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain50-method_chain50] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain51-method_chain51] +[gw14] [ 5%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain27-method_chain27] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain28-method_chain28] +[gw15] [ 5%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain21-method_chain21] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain22-method_chain22] +[gw16] [ 5%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain33-method_chain33] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain34-method_chain34] +[gw13] [ 5%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain15-method_chain15] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain16-method_chain16] +[gw17] [ 6%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain46-method_chain46] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain47-method_chain47] +[gw12] [ 6%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain9-method_chain9] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain10-method_chain10] +[gw11] [ 6%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain3-method_chain3] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain4-method_chain4] +[gw10] [ 6%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain56-method_chain56] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain57-method_chain57] +[gw19] [ 6%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain51-method_chain51] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain52-method_chain52] +[gw16] [ 6%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain34-method_chain34] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain35-method_chain35] +[gw13] [ 7%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain16-method_chain16] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain17-method_chain17] +[gw14] [ 7%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain28-method_chain28] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain29-method_chain29] +[gw18] [ 7%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain39-method_chain39] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain40-method_chain40] +[gw15] [ 7%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain22-method_chain22] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain23-method_chain23] +[gw17] [ 7%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain47-method_chain47] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain48-method_chain48] +[gw12] [ 8%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain10-method_chain10] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain11-method_chain11] +[gw11] [ 8%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain4-method_chain4] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain5-method_chain5] +[gw10] [ 8%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain57-method_chain57] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain58-method_chain58] +[gw14] [ 8%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain29-method_chain29] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain30-method_chain30] +[gw13] [ 8%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain17-method_chain17] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain18-method_chain18] +[gw15] [ 9%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain23-method_chain23] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain24-method_chain24] +[gw17] [ 9%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain48-method_chain48] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain64-method_chain64] +[gw19] [ 9%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain52-method_chain52] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain53-method_chain53] +[gw12] [ 9%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain11-method_chain11] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain12-method_chain12] +[gw18] [ 9%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain40-method_chain40] +[gw16] [ 9%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain35-method_chain35] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain41-method_chain41] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain36-method_chain36] -[gw39] [ 8%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain53-method_chain53] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain54-method_chain54] -[gw21] [ 8%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain64-method_chain64] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain65-method_chain65] -[gw27] [ 8%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain18-method_chain18] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain67-method_chain67] -[gw33] [ 8%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain33-method_chain33] -[gw22] [ 9%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain2-method_chain2] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain70-method_chain70] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain3-method_chain3] -[gw37] [ 9%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain45-method_chain45] +[gw13] [ 10%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain18-method_chain18] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain81-method_chain81] +[gw10] [ 10%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain58-method_chain58] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain59-method_chain59] +[gw14] [ 10%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain30-method_chain30] +[gw15] [ 10%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain24-method_chain24] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain89-method_chain89] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain73-method_chain73] -[gw23] [ 9%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain5-method_chain5] -[gw35] [ 9%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain38-method_chain38] +[gw17] [ 10%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain64-method_chain64] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain65-method_chain65] +[gw19] [ 11%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain53-method_chain53] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain54-method_chain54] +[gw11] [ 11%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain5-method_chain5] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain6-method_chain6] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain39-method_chain39] -[gw31] [ 9%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain30-method_chain30] +[gw13] [ 11%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain81-method_chain81] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain82-method_chain82] -[gw30] [ 9%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain27-method_chain27] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain88-method_chain88] -[gw34] [ 10%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain48-method_chain48] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain76-method_chain76] -[gw36] [ 10%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain41-method_chain41] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain42-method_chain42] -[gw29] [ 10%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain24-method_chain24] -[gw38] [ 10%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain50-method_chain50] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain51-method_chain51] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain85-method_chain85] -[gw28] [ 10%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain21-method_chain21] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain79-method_chain79] -[gw20] [ 11%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain63-method_chain63] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain91-method_chain91] -[gw26] [ 11%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain15-method_chain15] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain100-method_chain100] -[gw41] [ 11%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain60-method_chain60] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain94-method_chain94] -[gw21] [ 11%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain65-method_chain65] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain66-method_chain66] -[gw25] [ 11%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain12-method_chain12] +[gw12] [ 11%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain12-method_chain12] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain97-method_chain97] -[gw27] [ 12%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain67-method_chain67] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain68-method_chain68] -[gw40] [ 12%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain57-method_chain57] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain103-method_chain103] -[gw24] [ 12%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain9-method_chain9] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain106-method_chain106] -[gw37] [ 12%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain73-method_chain73] +[gw18] [ 11%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain41-method_chain41] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain42-method_chain42] +[gw14] [ 12%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain73-method_chain73] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain74-method_chain74] -[gw33] [ 12%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain70-method_chain70] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain71-method_chain71] -[gw34] [ 12%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain76-method_chain76] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain77-method_chain77] -[gw32] [ 13%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain36-method_chain36] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain109-method_chain109] -[gw28] [ 13%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain79-method_chain79] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain80-method_chain80] -[gw39] [ 13%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain54-method_chain54] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain112-method_chain112] -[gw31] [ 13%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain82-method_chain82] -[gw35] [ 13%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain39-method_chain39] +[gw16] [ 12%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain36-method_chain36] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain105-method_chain105] +[gw10] [ 12%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain59-method_chain59] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain60-method_chain60] +[gw17] [ 12%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain65-method_chain65] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain66-method_chain66] +[gw11] [ 12%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain6-method_chain6] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain120-method_chain120] +[gw12] [ 12%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain97-method_chain97] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain98-method_chain98] +[gw15] [ 13%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain89-method_chain89] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain90-method_chain90] +[gw19] [ 13%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain54-method_chain54] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain113-method_chain113] +[gw13] [ 13%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain82-method_chain82] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain83-method_chain83] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain121-method_chain121] -[gw38] [ 14%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain51-method_chain51] +[gw14] [ 13%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain74-method_chain74] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain75-method_chain75] +[gw17] [ 13%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain66-method_chain66] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain67-method_chain67] +[gw18] [ 14%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain42-method_chain42] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain127-method_chain127] -[gw22] [ 14%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain3-method_chain3] +[gw10] [ 14%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain60-method_chain60] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain61-method_chain61] +[gw16] [ 14%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain105-method_chain105] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain106-method_chain106] +[gw5] [ 14%] PASSED tests/test_binary.py::test_jaccard[same] +tests/test_binary.py::test_join[False] +[gw11] [ 14%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain120-method_chain120] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain121-method_chain121] +[gw19] [ 15%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain113-method_chain113] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain114-method_chain114] +[gw13] [ 15%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain83-method_chain83] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain84-method_chain84] +[gw17] [ 15%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain67-method_chain67] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain68-method_chain68] +[gw18] [ 15%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain127-method_chain127] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain128-method_chain128] +[gw14] [ 15%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain75-method_chain75] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain76-method_chain76] +[gw15] [ 16%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain90-method_chain90] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain91-method_chain91] +[gw10] [ 16%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain61-method_chain61] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain62-method_chain62] +[gw16] [ 16%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain106-method_chain106] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain107-method_chain107] +[gw12] [ 16%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain98-method_chain98] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain99-method_chain99] +[gw11] [ 16%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain121-method_chain121] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain122-method_chain122] +[gw19] [ 16%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain114-method_chain114] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain115-method_chain115] -[gw23] [ 14%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain6-method_chain6] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain118-method_chain118] -[gw20] [ 14%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain91-method_chain91] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain92-method_chain92] -[gw36] [ 14%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain42-method_chain42] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain124-method_chain124] -[gw41] [ 15%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain94-method_chain94] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain95-method_chain95] -[gw30] [ 15%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain88-method_chain88] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain89-method_chain89] -[gw21] [ 15%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain66-method_chain66] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain130-method_chain130] -[gw26] [ 15%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain100-method_chain100] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain101-method_chain101] -[gw25] [ 15%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain97-method_chain97] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain98-method_chain98] -[gw27] [ 16%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain68-method_chain68] +[gw17] [ 17%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain68-method_chain68] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain69-method_chain69] -[gw37] [ 16%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain74-method_chain74] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain75-method_chain75] -[gw33] [ 16%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain71-method_chain71] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain72-method_chain72] -[gw29] [ 16%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain85-method_chain85] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain86-method_chain86] -[gw24] [ 16%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain106-method_chain106] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain107-method_chain107] -[gw22] [ 16%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain115-method_chain115] +[gw18] [ 17%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain128-method_chain128] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain129-method_chain129] +[gw13] [ 17%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain84-method_chain84] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain85-method_chain85] +[gw14] [ 17%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain76-method_chain76] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain77-method_chain77] +[gw10] [ 17%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain62-method_chain62] +[gw15] [ 18%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain91-method_chain91] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain63-method_chain63] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain92-method_chain92] +[gw16] [ 18%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain107-method_chain107] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain108-method_chain108] +[gw12] [ 18%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain99-method_chain99] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain100-method_chain100] +[gw19] [ 18%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain115-method_chain115] +[gw11] [ 18%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain122-method_chain122] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain116-method_chain116] -[gw34] [ 17%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain77-method_chain77] -[gw28] [ 17%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain80-method_chain80] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain123-method_chain123] +[gw18] [ 19%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain129-method_chain129] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain130-method_chain130] +[gw17] [ 19%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain69-method_chain69] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain70-method_chain70] +[gw14] [ 19%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain77-method_chain77] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain78-method_chain78] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain81-method_chain81] -[gw38] [ 17%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain127-method_chain127] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain128-method_chain128] -[gw31] [ 17%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain83-method_chain83] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain84-method_chain84] -[gw35] [ 17%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain121-method_chain121] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain122-method_chain122] -[gw23] [ 18%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain118-method_chain118] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain119-method_chain119] -[gw41] [ 18%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain95-method_chain95] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain96-method_chain96] -[gw20] [ 18%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain92-method_chain92] +[gw10] [ 19%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain63-method_chain63] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain134-method_chain134] +[gw15] [ 19%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain92-method_chain92] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain93-method_chain93] -[gw32] [ 18%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain109-method_chain109] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain110-method_chain110] -[gw40] [ 18%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain103-method_chain103] -[gw39] [ 19%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain112-method_chain112] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain104-method_chain104] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain113-method_chain113] -[gw21] [ 19%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain130-method_chain130] +[gw11] [ 19%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain123-method_chain123] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain124-method_chain124] +[gw16] [ 20%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain108-method_chain108] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain109-method_chain109] +[gw19] [ 20%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain116-method_chain116] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain117-method_chain117] +[gw12] [ 20%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain100-method_chain100] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain101-method_chain101] +[gw18] [ 20%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain130-method_chain130] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain131-method_chain131] -[gw27] [ 19%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain69-method_chain69] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain133-method_chain133] -[gw26] [ 19%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain101-method_chain101] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain102-method_chain102] -[gw36] [ 19%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain124-method_chain124] +[gw13] [ 20%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain85-method_chain85] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain86-method_chain86] +[gw17] [ 21%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain70-method_chain70] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain71-method_chain71] +[gw14] [ 21%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain78-method_chain78] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain79-method_chain79] +[gw15] [ 21%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain93-method_chain93] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain94-method_chain94] +[gw1] [ 21%] PASSED tests/test_binary.py::test_overlap[same] +tests/test_binary.py::test_overlap[opposite] +[gw16] [ 21%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain109-method_chain109] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain110-method_chain110] +[gw19] [ 22%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain117-method_chain117] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain118-method_chain118] +[gw11] [ 22%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain124-method_chain124] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain125-method_chain125] -[gw33] [ 19%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain72-method_chain72] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain137-method_chain137] -[gw37] [ 20%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain75-method_chain75] +[gw18] [ 22%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain131-method_chain131] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain132-method_chain132] +[gw12] [ 22%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain101-method_chain101] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain102-method_chain102] +[gw10] [ 22%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain134-method_chain134] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain135-method_chain135] -[gw22] [ 20%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain116-method_chain116] -[gw24] [ 20%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain107-method_chain107] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain117-method_chain117] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain108-method_chain108] -[gw28] [ 20%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain81-method_chain81] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain141-method_chain141] -[gw38] [ 20%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain128-method_chain128] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain129-method_chain129] -[gw30] [ 21%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain89-method_chain89] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain90-method_chain90] -[gw34] [ 21%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain78-method_chain78] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain139-method_chain139] -[gw29] [ 21%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain86-method_chain86] +[gw14] [ 22%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain79-method_chain79] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain80-method_chain80] +[gw13] [ 23%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain86-method_chain86] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain87-method_chain87] -[gw20] [ 21%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain93-method_chain93] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain147-method_chain147] -[gw35] [ 21%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain122-method_chain122] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain123-method_chain123] -[gw41] [ 22%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain96-method_chain96] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain145-method_chain145] -[gw21] [ 22%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain131-method_chain131] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain132-method_chain132] -[gw25] [ 22%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain98-method_chain98] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain99-method_chain99] -[gw39] [ 22%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain113-method_chain113] -[gw32] [ 22%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain110-method_chain110] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain111-method_chain111] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain114-method_chain114] -[gw23] [ 22%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain119-method_chain119] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain120-method_chain120] -[gw40] [ 23%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain104-method_chain104] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain105-method_chain105] -[gw36] [ 23%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain125-method_chain125] +[gw15] [ 23%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain94-method_chain94] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain95-method_chain95] +[gw17] [ 23%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain71-method_chain71] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain72-method_chain72] +[gw19] [ 23%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain118-method_chain118] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain119-method_chain119] +[gw18] [ 23%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain132-method_chain132] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain133-method_chain133] +[gw11] [ 24%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain125-method_chain125] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain126-method_chain126] -[gw26] [ 23%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain102-method_chain102] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain149-method_chain149] -[gw31] [ 23%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain84-method_chain84] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain143-method_chain143] -[gw28] [ 23%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain141-method_chain141] +[gw14] [ 24%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain80-method_chain80] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain141-method_chain141] +[gw16] [ 24%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain110-method_chain110] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain111-method_chain111] +[gw12] [ 24%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain102-method_chain102] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain103-method_chain103] +[gw15] [ 24%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain95-method_chain95] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain96-method_chain96] +[gw17] [ 25%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain72-method_chain72] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain148-method_chain148] +[gw10] [ 25%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain135-method_chain135] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain136-method_chain136] +[gw13] [ 25%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain87-method_chain87] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain88-method_chain88] +[gw14] [ 25%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain141-method_chain141] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain142-method_chain142] -[gw38] [ 24%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain129-method_chain129] +[gw19] [ 25%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain119-method_chain119] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain154-method_chain154] +[gw11] [ 25%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain126-method_chain126] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain166-method_chain166] +[gw16] [ 26%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain111-method_chain111] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain112-method_chain112] +[gw15] [ 26%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain96-method_chain96] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain172-method_chain172] +[gw18] [ 26%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain133-method_chain133] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain160-method_chain160] +[gw12] [ 26%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain103-method_chain103] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain104-method_chain104] +[gw13] [ 26%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain88-method_chain88] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain178-method_chain178] +[gw14] [ 27%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain142-method_chain142] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain143-method_chain143] +[gw10] [ 27%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain136-method_chain136] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain137-method_chain137] +[gw11] [ 27%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain166-method_chain166] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain167-method_chain167] +[gw17] [ 27%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain148-method_chain148] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain149-method_chain149] +[gw15] [ 27%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain172-method_chain172] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain173-method_chain173] +[gw6] [ 28%] PASSED tests/test_binary.py::test_nearest[upstream-True-same] +tests/test_binary.py::test_nearest[upstream-True-opposite] +[gw19] [ 28%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain154-method_chain154] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain155-method_chain155] -[gw33] [ 24%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain137-method_chain137] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain138-method_chain138] -[gw35] [ 24%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain123-method_chain123] +[gw18] [ 28%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain160-method_chain160] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain161-method_chain161] -[gw22] [ 24%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain117-method_chain117] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain151-method_chain151] -[gw24] [ 24%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain108-method_chain108] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain153-method_chain153] -[gw27] [ 25%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain133-method_chain133] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain134-method_chain134] -[gw41] [ 25%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain145-method_chain145] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain146-method_chain146] -[gw37] [ 25%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain135-method_chain135] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain136-method_chain136] -[gw21] [ 25%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain132-method_chain132] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain163-method_chain163] -[gw39] [ 25%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain114-method_chain114] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain169-method_chain169] -[gw30] [ 25%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain90-method_chain90] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain157-method_chain157] -[gw32] [ 26%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain111-method_chain111] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain167-method_chain167] -[gw34] [ 26%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain139-method_chain139] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain140-method_chain140] -[gw29] [ 26%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain87-method_chain87] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain159-method_chain159] -[gw23] [ 26%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain120-method_chain120] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain171-method_chain171] -[gw31] [ 26%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain143-method_chain143] +[gw2] [ 28%] PASSED tests/test_binary.py::test_nearest[None-True-same] +tests/test_binary.py::test_nearest[None-True-opposite] +[gw16] [ 28%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain112-method_chain112] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain184-method_chain184] +[gw13] [ 29%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain178-method_chain178] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain179-method_chain179] +[gw9] [ 29%] PASSED tests/test_binary.py::test_k_nearest[upstream-False-same-last] +tests/test_binary.py::test_k_nearest[upstream-False-False-last] +[gw14] [ 29%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain143-method_chain143] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain144-method_chain144] -[gw25] [ 27%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain99-method_chain99] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain165-method_chain165] -[gw28] [ 27%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain142-method_chain142] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain177-method_chain177] -[gw36] [ 27%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain126-method_chain126] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain175-method_chain175] -[gw40] [ 27%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain105-method_chain105] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain173-method_chain173] -[gw38] [ 27%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain155-method_chain155] +[gw12] [ 29%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain104-method_chain104] +[gw11] [ 29%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain167-method_chain167] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain190-method_chain190] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain168-method_chain168] +[gw7] [ 29%] PASSED tests/test_binary.py::test_nearest[downstream-True-same] +[gw0] [ 30%] PASSED tests/test_binary.py::test_set_intersect[False] +tests/test_binary.py::test_nearest[downstream-True-opposite] +tests/test_binary.py::test_set_intersect[same] +[gw15] [ 30%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain173-method_chain173] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain174-method_chain174] +[gw10] [ 30%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain137-method_chain137] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain138-method_chain138] +[gw4] [ 30%] PASSED tests/test_binary.py::test_k_nearest[downstream-False-same-last] +tests/test_binary.py::test_k_nearest[downstream-False-False-last] +[gw19] [ 30%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain155-method_chain155] +[gw17] [ 31%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain149-method_chain149] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain156-method_chain156] -[gw26] [ 28%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain149-method_chain149] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain150-method_chain150] -[gw21] [ 28%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain163-method_chain163] -[gw20] [ 28%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain147-method_chain147] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain164-method_chain164] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain148-method_chain148] -[gw41] [ 28%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain146-method_chain146] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain183-method_chain183] -[gw35] [ 28%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain161-method_chain161] +[gw13] [ 31%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain179-method_chain179] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain180-method_chain180] +[gw18] [ 31%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain161-method_chain161] +[gw14] [ 31%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain144-method_chain144] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain162-method_chain162] -[gw39] [ 29%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain169-method_chain169] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain170-method_chain170] -[gw32] [ 29%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain167-method_chain167] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain168-method_chain168] -[gw22] [ 29%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain151-method_chain151] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain152-method_chain152] -[gw24] [ 29%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain153-method_chain153] -[gw30] [ 29%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain157-method_chain157] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain154-method_chain154] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain158-method_chain158] -[gw37] [ 29%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain136-method_chain136] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain145-method_chain145] +[gw12] [ 31%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain190-method_chain190] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain191-method_chain191] +[gw11] [ 32%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain168-method_chain168] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain169-method_chain169] +[gw15] [ 32%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain174-method_chain174] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain175-method_chain175] +[gw8] [ 32%] PASSED tests/test_binary.py::test_k_nearest[None-False-same-last] +[gw16] [ 32%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain184-method_chain184] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain185-method_chain185] -[gw31] [ 30%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain144-method_chain144] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain189-method_chain189] -[gw27] [ 30%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain134-method_chain134] -[gw33] [ 30%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain138-method_chain138] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain179-method_chain179] +tests/test_binary.py::test_k_nearest[None-False-False-last] +[gw19] [ 32%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain156-method_chain156] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain157-method_chain157] +[gw13] [ 32%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain180-method_chain180] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain181-method_chain181] -[gw25] [ 30%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain165-method_chain165] -[gw23] [ 30%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain171-method_chain171] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain166-method_chain166] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain172-method_chain172] -[gw34] [ 31%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain140-method_chain140] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain187-method_chain187] -[gw28] [ 31%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain177-method_chain177] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain178-method_chain178] -[gw29] [ 31%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain159-method_chain159] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain160-method_chain160] -[gw21] [ 31%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain164-method_chain164] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain195-method_chain195] -[gw40] [ 31%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain173-method_chain173] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain174-method_chain174] -[gw38] [ 32%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain156-method_chain156] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain191-method_chain191] -[gw36] [ 32%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain175-method_chain175] +[gw3] [ 33%] PASSED tests/test_binary.py::test_coverage[same] +tests/test_binary.py::test_coverage[opposite] +[gw12] [ 33%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain191-method_chain191] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain192-method_chain192] +[gw18] [ 33%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain162-method_chain162] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain163-method_chain163] +[gw14] [ 33%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain145-method_chain145] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain146-method_chain146] +[gw11] [ 33%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain169-method_chain169] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain170-method_chain170] +[gw17] [ 34%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain150-method_chain150] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain151-method_chain151] +[gw15] [ 34%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain175-method_chain175] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain176-method_chain176] -[gw39] [ 32%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain170-method_chain170] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain201-method_chain201] -[gw3] [ 32%] PASSED tests/test_binary.py::test_intersect[same] -tests/test_binary.py::test_intersect[opposite] -[gw35] [ 32%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain162-method_chain162] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain199-method_chain199] -[gw13] [ 32%] PASSED tests/test_binary.py::test_join[opposite] -tests/test_binary.py::test_reldist -[gw41] [ 33%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain183-method_chain183] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain184-method_chain184] -[gw32] [ 33%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain168-method_chain168] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain203-method_chain203] -[gw33] [ 33%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain179-method_chain179] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain180-method_chain180] -[gw2] [ 33%] PASSED tests/test_binary.py::test_overlap[same] -[gw26] [ 33%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain150-method_chain150] -[gw27] [ 34%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain181-method_chain181] +[gw10] [ 34%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain138-method_chain138] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain139-method_chain139] +[gw16] [ 34%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain185-method_chain185] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain186-method_chain186] +[gw12] [ 34%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain192-method_chain192] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain193-method_chain193] -tests/test_binary.py::test_overlap[opposite] +[gw13] [ 35%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain181-method_chain181] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain182-method_chain182] -[gw25] [ 34%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain166-method_chain166] -[gw23] [ 34%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain172-method_chain172] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain211-method_chain211] -[gw30] [ 34%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain158-method_chain158] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain213-method_chain213] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain209-method_chain209] -[gw28] [ 34%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain178-method_chain178] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain215-method_chain215] -[gw31] [ 35%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain189-method_chain189] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain190-method_chain190] -[gw20] [ 35%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain148-method_chain148] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain197-method_chain197] -[gw24] [ 35%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain154-method_chain154] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain207-method_chain207] -[gw29] [ 35%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain160-method_chain160] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain216-method_chain216] -[gw21] [ 35%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain195-method_chain195] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain196-method_chain196] -[gw38] [ 35%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain191-method_chain191] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain192-method_chain192] -[gw40] [ 36%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain174-method_chain174] -[gw37] [ 36%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain185-method_chain185] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain217-method_chain217] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain186-method_chain186] -[gw12] [ 36%] PASSED tests/test_binary.py::test_jaccard[same] -tests/test_binary.py::test_join[False] -[gw36] [ 36%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain176-method_chain176] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain218-method_chain218] -[gw34] [ 36%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain187-method_chain187] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain188-method_chain188] -[gw22] [ 37%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain152-method_chain152] -[gw26] [ 37%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain193-method_chain193] +[gw19] [ 35%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain157-method_chain157] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain158-method_chain158] +[gw14] [ 35%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain146-method_chain146] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain147-method_chain147] +[gw18] [ 35%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain163-method_chain163] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain164-method_chain164] +[gw11] [ 35%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain170-method_chain170] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain171-method_chain171] +[gw15] [ 35%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain176-method_chain176] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain177-method_chain177] +[gw17] [ 36%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain151-method_chain151] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain152-method_chain152] +[gw12] [ 36%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain193-method_chain193] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain194-method_chain194] +[gw5] [ 36%] PASSED tests/test_binary.py::test_join[False] +[gw19] [ 36%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain158-method_chain158] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain159-method_chain159] +tests/test_binary.py::test_join[same] +[gw18] [ 36%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain164-method_chain164] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain165-method_chain165] +[gw10] [ 37%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain139-method_chain139] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain140-method_chain140] +[gw16] [ 37%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain186-method_chain186] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain187-method_chain187] +[gw11] [ 37%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain171-method_chain171] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain200-method_chain200] +[gw15] [ 37%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain177-method_chain177] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain205-method_chain205] -[gw33] [ 37%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain180-method_chain180] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain220-method_chain220] -[gw23] [ 37%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain213-method_chain213] -[gw9] [ 37%] PASSED tests/test_binary.py::test_nearest[upstream-False-same] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain214-method_chain214] -[gw25] [ 38%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain211-method_chain211] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain212-method_chain212] -tests/test_binary.py::test_nearest[upstream-False-opposite] -[gw32] [ 38%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain203-method_chain203] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain204-method_chain204] -[gw31] [ 38%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain190-method_chain190] -[gw28] [ 38%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain215-method_chain215] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain223-method_chain223] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain222-method_chain222] -[gw30] [ 38%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain209-method_chain209] +[gw13] [ 37%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain182-method_chain182] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain183-method_chain183] +[gw12] [ 38%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain194-method_chain194] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain210-method_chain210] -[gw11] [ 38%] PASSED tests/test_binary.py::test_nearest[downstream-False-same] -[gw24] [ 39%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain207-method_chain207] -[gw29] [ 39%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain216-method_chain216] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain224-method_chain224] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain208-method_chain208] -tests/test_binary.py::test_nearest[downstream-False-opposite] -[gw39] [ 39%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain201-method_chain201] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain202-method_chain202] -[gw41] [ 39%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain184-method_chain184] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain219-method_chain219] -[gw38] [ 39%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain192-method_chain192] +[gw14] [ 38%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain147-method_chain147] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain195-method_chain195] +[gw18] [ 38%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain165-method_chain165] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain220-method_chain220] +[gw19] [ 38%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain159-method_chain159] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain215-method_chain215] +[gw10] [ 38%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain140-method_chain140] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain225-method_chain225] +[gw15] [ 38%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain205-method_chain205] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain206-method_chain206] +[gw11] [ 39%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain200-method_chain200] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain201-method_chain201] +[gw14] [ 39%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain195-method_chain195] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain196-method_chain196] +[gw17] [ 39%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain152-method_chain152] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain153-method_chain153] +[gw12] [ 39%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain210-method_chain210] +[gw1] [ 39%] PASSED tests/test_binary.py::test_overlap[opposite] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain211-method_chain211] +tests/test_binary.py::test_intersect[False] +[gw16] [ 40%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain187-method_chain187] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain188-method_chain188] +[gw18] [ 40%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain220-method_chain220] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain221-method_chain221] +[gw19] [ 40%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain215-method_chain215] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain216-method_chain216] +[gw13] [ 40%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain183-method_chain183] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain230-method_chain230] +[gw10] [ 40%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain225-method_chain225] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain226-method_chain226] -[gw40] [ 40%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain217-method_chain217] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain227-method_chain227] -[gw35] [ 40%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain199-method_chain199] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain200-method_chain200] -[gw36] [ 40%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain218-method_chain218] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain229-method_chain229] -[gw25] [ 40%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain212-method_chain212] +[gw15] [ 41%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain206-method_chain206] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain207-method_chain207] +[gw12] [ 41%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain211-method_chain211] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain212-method_chain212] +[gw17] [ 41%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain153-method_chain153] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain234-method_chain234] -[gw33] [ 40%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain220-method_chain220] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain232-method_chain232] -[gw7] [ 41%] PASSED tests/test_binary.py::test_nearest[None-False-same] -[gw0] [ 41%] PASSED tests/test_binary.py::test_set_intersect[False] -tests/test_binary.py::test_nearest[None-False-opposite] -tests/test_binary.py::test_set_intersect[same] -[gw27] [ 41%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain182-method_chain182] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain221-method_chain221] -[gw20] [ 41%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain197-method_chain197] -[gw26] [ 41%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain194-method_chain194] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain198-method_chain198] +[gw18] [ 41%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain221-method_chain221] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain222-method_chain222] +[gw19] [ 41%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain216-method_chain216] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain217-method_chain217] +[gw13] [ 41%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain230-method_chain230] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain231-method_chain231] -[gw37] [ 41%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain186-method_chain186] +[gw10] [ 42%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain226-method_chain226] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain227-method_chain227] +[gw14] [ 42%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain196-method_chain196] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain197-method_chain197] +[gw11] [ 42%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain201-method_chain201] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain202-method_chain202] +[gw16] [ 42%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain188-method_chain188] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain189-method_chain189] +[gw15] [ 42%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain207-method_chain207] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain208-method_chain208] +[gw12] [ 43%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain212-method_chain212] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain213-method_chain213] +[gw18] [ 43%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain222-method_chain222] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain223-method_chain223] +[gw10] [ 43%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain227-method_chain227] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain228-method_chain228] -[gw23] [ 42%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain214-method_chain214] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain233-method_chain233] -[gw21] [ 42%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain196-method_chain196] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain225-method_chain225] -[gw22] [ 42%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain205-method_chain205] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain206-method_chain206] -[gw31] [ 42%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain223-method_chain223] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain236-method_chain236] -[gw8] [ 42%] PASSED tests/test_binary.py::test_nearest[upstream-True-same] -tests/test_binary.py::test_nearest[upstream-True-opposite] -[gw34] [ 43%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain188-method_chain188] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain230-method_chain230] -[gw32] [ 43%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain204-method_chain204] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain235-method_chain235] -[gw29] [ 43%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain224-method_chain224] -[gw28] [ 43%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain222-method_chain222] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain240-method_chain240] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain237-method_chain237] -[gw30] [ 43%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain210-method_chain210] +[gw19] [ 43%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain217-method_chain217] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain218-method_chain218] +[gw16] [ 43%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain189-method_chain189] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain238-method_chain238] -[gw40] [ 44%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain227-method_chain227] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain244-method_chain244] -[gw38] [ 44%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain226-method_chain226] -[gw41] [ 44%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain219-method_chain219] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain243-method_chain243] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain242-method_chain242] -[gw24] [ 44%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain208-method_chain208] +[gw17] [ 44%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain234-method_chain234] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain235-method_chain235] +[gw11] [ 44%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain202-method_chain202] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain203-method_chain203] +[gw15] [ 44%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain208-method_chain208] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain209-method_chain209] +[gw13] [ 44%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain231-method_chain231] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain232-method_chain232] +[gw12] [ 44%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain213-method_chain213] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain214-method_chain214] +[gw18] [ 45%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain223-method_chain223] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain224-method_chain224] +[gw14] [ 45%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain197-method_chain197] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain198-method_chain198] +[gw10] [ 45%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain228-method_chain228] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain229-method_chain229] +[gw19] [ 45%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain218-method_chain218] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain219-method_chain219] +[gw16] [ 45%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain238-method_chain238] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain239-method_chain239] -[gw36] [ 44%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain229-method_chain229] +[gw12] [ 45%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain214-method_chain214] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain246-method_chain246] -[gw39] [ 45%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain202-method_chain202] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain241-method_chain241] -[gw37] [ 45%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain228-method_chain228] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain253-method_chain253] -[gw35] [ 45%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain200-method_chain200] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain245-method_chain245] -[gw21] [ 45%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain225-method_chain225] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain255-method_chain255] -[gw27] [ 45%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain221-method_chain221] +[gw17] [ 46%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain235-method_chain235] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain236-method_chain236] +[gw11] [ 46%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain203-method_chain203] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain204-method_chain204] +[gw15] [ 46%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain209-method_chain209] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain242-method_chain242] +[gw18] [ 46%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain224-method_chain224] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain250-method_chain250] -[gw22] [ 45%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain206-method_chain206] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain256-method_chain256] -[gw10] [ 46%] PASSED tests/test_binary.py::test_nearest[downstream-True-same] -tests/test_binary.py::test_nearest[downstream-True-opposite] -[gw34] [ 46%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain230-method_chain230] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain258-method_chain258] -[gw29] [ 46%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain240-method_chain240] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain260-method_chain260] -[gw41] [ 46%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain242-method_chain242] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain265-method_chain265] -[gw40] [ 46%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain244-method_chain244] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain263-method_chain263] -[gw23] [ 47%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain233-method_chain233] -[gw33] [ 47%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain232-method_chain232] +[gw10] [ 46%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain229-method_chain229] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain254-method_chain254] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain248-method_chain248] -[gw25] [ 47%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain234-method_chain234] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain247-method_chain247] -[gw20] [ 47%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain198-method_chain198] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain251-method_chain251] -[gw6] [ 47%] PASSED tests/test_binary.py::test_nearest[None-True-same] -[gw30] [ 48%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain238-method_chain238] -[gw24] [ 48%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain239-method_chain239] +[gw13] [ 47%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain232-method_chain232] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain233-method_chain233] +[gw19] [ 47%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain219-method_chain219] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain258-method_chain258] +[gw14] [ 47%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain198-method_chain198] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain199-method_chain199] +[gw16] [ 47%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain239-method_chain239] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain240-method_chain240] +[gw15] [ 47%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain242-method_chain242] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain243-method_chain243] +[gw11] [ 48%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain204-method_chain204] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain262-method_chain262] +[gw12] [ 48%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain246-method_chain246] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain247-method_chain247] +[gw10] [ 48%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain254-method_chain254] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain255-method_chain255] +[gw19] [ 48%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain258-method_chain258] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain259-method_chain259] +[gw17] [ 48%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain236-method_chain236] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain237-method_chain237] +[gw13] [ 48%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain233-method_chain233] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain266-method_chain266] -tests/test_binary.py::test_nearest[None-True-opposite] -[gw38] [ 48%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain243-method_chain243] +[gw16] [ 49%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain240-method_chain240] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain241-method_chain241] +[gw18] [ 49%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain250-method_chain250] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain251-method_chain251] +[gw15] [ 49%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain243-method_chain243] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain244-method_chain244] +[gw11] [ 49%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain262-method_chain262] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain263-method_chain263] +[gw14] [ 49%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain199-method_chain199] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain270-method_chain270] +[gw10] [ 50%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain255-method_chain255] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain256-method_chain256] +[gw12] [ 50%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain247-method_chain247] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain248-method_chain248] +[gw19] [ 50%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain259-method_chain259] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain260-method_chain260] +[gw16] [ 50%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain241-method_chain241] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain276-method_chain276] +[gw15] [ 50%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain244-method_chain244] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain245-method_chain245] +[gw13] [ 51%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain266-method_chain266] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain267-method_chain267] +[gw6] [ 51%] PASSED tests/test_binary.py::test_nearest[upstream-True-opposite] +[gw11] [ 51%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain263-method_chain263] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain264-method_chain264] -[gw32] [ 48%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain235-method_chain235] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain259-method_chain259] -[gw26] [ 48%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain231-method_chain231] +tests/test_binary.py::test_nearest[upstream-False-False] +[gw17] [ 51%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain237-method_chain237] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain273-method_chain273] +[gw14] [ 51%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain270-method_chain270] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain271-method_chain271] +[gw18] [ 51%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain251-method_chain251] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain252-method_chain252] -[gw39] [ 48%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain241-method_chain241] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain268-method_chain268] -[gw14] [ 49%] PASSED tests/test_binary.py::test_k_nearest[downstream-False-same-last] -tests/test_binary.py::test_k_nearest[downstream-False-False-last] -[gw31] [ 49%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain236-method_chain236] +[gw7] [ 52%] PASSED tests/test_binary.py::test_nearest[downstream-True-opposite] +tests/test_binary.py::test_nearest[downstream-False-False] +[gw2] [ 52%] PASSED tests/test_binary.py::test_nearest[None-True-opposite] +tests/test_binary.py::test_nearest[None-False-False] +[gw10] [ 52%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain256-method_chain256] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain257-method_chain257] -[gw16] [ 49%] PASSED tests/test_binary.py::test_k_nearest[upstream-False-same-last] -tests/test_binary.py::test_k_nearest[upstream-False-False-last] -[gw28] [ 49%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain237-method_chain237] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain261-method_chain261] -[gw37] [ 49%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain253-method_chain253] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain269-method_chain269] -[gw21] [ 50%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain255-method_chain255] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain271-method_chain271] -[gw41] [ 50%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain265-method_chain265] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain276-method_chain276] -[gw40] [ 50%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain263-method_chain263] +[gw16] [ 52%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain276-method_chain276] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain277-method_chain277] -[gw22] [ 50%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain256-method_chain256] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain273-method_chain273] -[gw29] [ 50%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain260-method_chain260] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain275-method_chain275] -[gw36] [ 51%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain246-method_chain246] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain267-method_chain267] -[gw34] [ 51%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain258-method_chain258] +[gw19] [ 52%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain260-method_chain260] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain261-method_chain261] +[gw11] [ 53%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain264-method_chain264] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain265-method_chain265] +[gw13] [ 53%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain267-method_chain267] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain268-method_chain268] +[gw12] [ 53%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain248-method_chain248] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain249-method_chain249] +[gw17] [ 53%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain273-method_chain273] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain274-method_chain274] -[gw30] [ 51%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain262-method_chain262] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain282-method_chain282] -[gw23] [ 51%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain254-method_chain254] +[gw14] [ 53%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain271-method_chain271] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain272-method_chain272] +[gw16] [ 54%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain277-method_chain277] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain278-method_chain278] -[gw38] [ 51%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain264-method_chain264] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain284-method_chain284] -[gw39] [ 51%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain268-method_chain268] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain287-method_chain287] -[gw25] [ 52%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain247-method_chain247] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain280-method_chain280] -[gw24] [ 52%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain266-method_chain266] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain283-method_chain283] -[gw28] [ 52%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain261-method_chain261] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain289-method_chain289] -[gw32] [ 52%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain259-method_chain259] +[gw19] [ 54%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain261-method_chain261] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain285-method_chain285] -[gw33] [ 52%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain248-method_chain248] +[gw18] [ 54%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain252-method_chain252] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain253-method_chain253] +[gw0] [ 54%] PASSED tests/test_binary.py::test_set_intersect[same] +tests/test_binary.py::test_set_union[False] +[gw10] [ 54%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain257-method_chain257] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain282-method_chain282] +[gw15] [ 54%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain245-method_chain245] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain279-method_chain279] -[gw35] [ 53%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain245-method_chain245] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain270-method_chain270] -[gw31] [ 53%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain257-method_chain257] +[gw11] [ 55%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain265-method_chain265] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain288-method_chain288] -[gw1] [ 53%] PASSED tests/test_binary.py::test_set_union[False] -[gw29] [ 53%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain275-method_chain275] -[gw40] [ 53%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain277-method_chain277] -[gw20] [ 54%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain251-method_chain251] -[gw26] [ 54%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain252-method_chain252] -[gw41] [ 54%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain276-method_chain276] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain295-method_chain295] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain293-method_chain293] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain281-method_chain281] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain292-method_chain292] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain286-method_chain286] -tests/test_binary.py::test_set_union[same] -[gw37] [ 54%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain269-method_chain269] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain290-method_chain290] -[gw34] [ 54%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain274-method_chain274] +[gw13] [ 55%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain268-method_chain268] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain269-method_chain269] +[gw17] [ 55%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain274-method_chain274] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain275-method_chain275] +[gw14] [ 55%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain272-method_chain272] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain294-method_chain294] +[gw16] [ 55%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain278-method_chain278] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain297-method_chain297] -[gw21] [ 54%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain271-method_chain271] +[gw12] [ 56%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain249-method_chain249] +[gw15] [ 56%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain279-method_chain279] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain280-method_chain280] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain291-method_chain291] -[gw27] [ 55%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain250-method_chain250] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain272-method_chain272] -[gw36] [ 55%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain267-method_chain267] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain296-method_chain296] -[gw22] [ 55%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain273-method_chain273] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain294-method_chain294] -[gw23] [ 55%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain278-method_chain278] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain299-method_chain299] -[gw28] [ 55%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain289-method_chain289] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain304-method_chain304] -[gw33] [ 56%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain279-method_chain279] +[gw11] [ 56%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain288-method_chain288] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain289-method_chain289] +[gw18] [ 56%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain253-method_chain253] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain300-method_chain300] +[gw9] [ 56%] PASSED tests/test_binary.py::test_k_nearest[upstream-False-False-last] +[gw17] [ 57%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain275-method_chain275] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain306-method_chain306] -[gw30] [ 56%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain282-method_chain282] +tests/test_binary.py::test_k_nearest[upstream-True-opposite-last] +[gw5] [ 57%] PASSED tests/test_binary.py::test_join[same] +[gw10] [ 57%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain282-method_chain282] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain283-method_chain283] +[gw13] [ 57%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain269-method_chain269] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain303-method_chain303] +tests/test_binary.py::test_join[opposite] +[gw12] [ 57%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain291-method_chain291] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain292-method_chain292] +[gw11] [ 58%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain289-method_chain289] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain290-method_chain290] +[gw19] [ 58%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain285-method_chain285] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain286-method_chain286] +[gw16] [ 58%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain297-method_chain297] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain298-method_chain298] -[gw31] [ 56%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain288-method_chain288] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain308-method_chain308] -[gw35] [ 56%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain270-method_chain270] +[gw14] [ 58%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain294-method_chain294] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain295-method_chain295] +[gw4] [ 58%] PASSED tests/test_binary.py::test_k_nearest[downstream-False-False-last] +tests/test_binary.py::test_k_nearest[downstream-True-opposite-last] +[gw17] [ 58%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain306-method_chain306] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain307-method_chain307] -[gw38] [ 56%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain284-method_chain284] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain300-method_chain300] -[gw39] [ 57%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain287-method_chain287] +[gw13] [ 59%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain303-method_chain303] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain304-method_chain304] +[gw18] [ 59%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain300-method_chain300] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain301-method_chain301] -[gw18] [ 57%] PASSED tests/test_binary.py::test_k_nearest[None-False-same-last] -tests/test_binary.py::test_k_nearest[None-False-False-last] -[gw4] [ 57%] PASSED tests/test_binary.py::test_coverage[same] -[gw37] [ 57%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain290-method_chain290] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain314-method_chain314] -[gw41] [ 57%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain292-method_chain292] -[gw40] [ 58%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain293-method_chain293] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain312-method_chain312] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain310-method_chain310] -tests/test_binary.py::test_coverage[opposite] -[gw21] [ 58%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain291-method_chain291] -[gw24] [ 58%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain283-method_chain283] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain303-method_chain303] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain316-method_chain316] -[gw27] [ 58%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain272-method_chain272] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain317-method_chain317] -[gw26] [ 58%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain286-method_chain286] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain313-method_chain313] -[gw32] [ 58%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain285-method_chain285] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain305-method_chain305] -[gw36] [ 59%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain296-method_chain296] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain318-method_chain318] -[gw25] [ 59%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain280-method_chain280] +[gw12] [ 59%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain292-method_chain292] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain293-method_chain293] +[gw15] [ 59%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain280-method_chain280] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain281-method_chain281] +[gw11] [ 59%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain290-method_chain290] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain309-method_chain309] +[gw1] [ 60%] PASSED tests/test_binary.py::test_intersect[False] +[gw10] [ 60%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain283-method_chain283] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain284-method_chain284] +tests/test_binary.py::test_intersect[same] +[gw19] [ 60%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain286-method_chain286] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain287-method_chain287] +[gw14] [ 60%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain295-method_chain295] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain296-method_chain296] +[gw18] [ 60%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain301-method_chain301] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain302-method_chain302] -[gw20] [ 59%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain281-method_chain281] +[gw17] [ 61%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain307-method_chain307] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain308-method_chain308] +[gw16] [ 61%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain298-method_chain298] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain299-method_chain299] +[gw13] [ 61%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain304-method_chain304] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain305-method_chain305] +[gw12] [ 61%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain293-method_chain293] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain311-method_chain311] -[gw29] [ 59%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain295-method_chain295] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain309-method_chain309] -[gw34] [ 59%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain297-method_chain297] +[gw11] [ 61%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain309-method_chain309] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain310-method_chain310] +[gw15] [ 61%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain281-method_chain281] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain313-method_chain313] +[gw10] [ 62%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain284-method_chain284] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain315-method_chain315] -[gw28] [ 60%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain304-method_chain304] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain321-method_chain321] -[gw23] [ 60%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain299-method_chain299] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain320-method_chain320] -[gw35] [ 60%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain307-method_chain307] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain325-method_chain325] -[gw37] [ 60%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain314-method_chain314] -[gw33] [ 60%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain306-method_chain306] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain322-method_chain322] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain328-method_chain328] -[gw15] [ 61%] PASSED tests/test_binary.py::test_k_nearest[downstream-True-same-last] -[gw40] [ 61%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain310-method_chain310] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain330-method_chain330] -tests/test_binary.py::test_k_nearest[downstream-True-False-last] -[gw31] [ 61%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain308-method_chain308] -[gw41] [ 61%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain312-method_chain312] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain324-method_chain324] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain329-method_chain329] -[gw21] [ 61%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain316-method_chain316] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain332-method_chain332] -[gw30] [ 61%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain298-method_chain298] +[gw3] [ 62%] PASSED tests/test_binary.py::test_coverage[opposite] +tests/test_binary.py::test_subtraction[same] +[gw8] [ 62%] PASSED tests/test_binary.py::test_k_nearest[None-False-False-last] +[gw12] [ 62%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain311-method_chain311] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain312-method_chain312] +tests/test_binary.py::test_k_nearest[None-True-opposite-last] +[gw17] [ 62%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain308-method_chain308] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain323-method_chain323] -[gw5] [ 62%] PASSED tests/test_binary.py::test_subtraction[opposite] -tests/test_binary.py::test_subtraction[False] -[gw22] [ 62%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain294-method_chain294] +[gw18] [ 63%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain302-method_chain302] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain321-method_chain321] +[gw14] [ 63%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain296-method_chain296] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain319-method_chain319] -[gw39] [ 62%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain301-method_chain301] +[gw13] [ 63%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain305-method_chain305] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain327-method_chain327] -[gw24] [ 62%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain303-method_chain303] +[gw19] [ 63%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain287-method_chain287] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain317-method_chain317] +[gw11] [ 63%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain310-method_chain310] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain329-method_chain329] +[gw16] [ 64%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain299-method_chain299] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain325-method_chain325] +[gw15] [ 64%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain313-method_chain313] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain314-method_chain314] +[gw12] [ 64%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain312-method_chain312] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain331-method_chain331] -[gw38] [ 62%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain300-method_chain300] +[gw17] [ 64%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain323-method_chain323] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain324-method_chain324] +[gw14] [ 64%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain319-method_chain319] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain320-method_chain320] +[gw18] [ 64%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain321-method_chain321] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain322-method_chain322] +[gw10] [ 65%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain315-method_chain315] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain316-method_chain316] +[gw19] [ 65%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain317-method_chain317] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain318-method_chain318] +[gw13] [ 65%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain327-method_chain327] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain328-method_chain328] +[gw16] [ 65%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain325-method_chain325] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain326-method_chain326] -[gw27] [ 63%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain317-method_chain317] +[gw15] [ 65%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain314-method_chain314] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain333-method_chain333] -[gw17] [ 63%] PASSED tests/test_binary.py::test_k_nearest[upstream-True-same-last] -tests/test_binary.py::test_k_nearest[upstream-True-False-last] -[gw36] [ 63%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain318-method_chain318] -[gw26] [ 63%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain313-method_chain313] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain336-method_chain336] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain334-method_chain334] -[gw32] [ 63%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain305-method_chain305] +[gw17] [ 66%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain324-method_chain324] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain335-method_chain335] -[gw20] [ 64%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain311-method_chain311] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain338-method_chain338] -[gw25] [ 64%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain302-method_chain302] -[gw29] [ 64%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain309-method_chain309] +[gw11] [ 66%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain329-method_chain329] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain330-method_chain330] +[gw12] [ 66%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain331-method_chain331] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain332-method_chain332] +[gw13] [ 66%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain328-method_chain328] +[gw10] [ 66%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain316-method_chain316] +[gw14] [ 67%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain320-method_chain320] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain345-method_chain345] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain341-method_chain341] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain337-method_chain337] +[gw18] [ 67%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain322-method_chain322] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain339-method_chain339] -[gw28] [ 64%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain321-method_chain321] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain341-method_chain341] -[gw35] [ 64%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain325-method_chain325] +[gw19] [ 67%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain318-method_chain318] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain343-method_chain343] -[gw37] [ 64%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain328-method_chain328] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain345-method_chain345] -[gw31] [ 65%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain324-method_chain324] +[gw16] [ 67%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain326-method_chain326] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain347-method_chain347] -[gw30] [ 65%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain323-method_chain323] +[gw15] [ 67%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain333-method_chain333] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain334-method_chain334] +[gw18] [ 67%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain339-method_chain339] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain340-method_chain340] +[gw17] [ 68%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain335-method_chain335] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain336-method_chain336] +[gw14] [ 68%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain337-method_chain337] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain338-method_chain338] +[gw11] [ 68%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain330-method_chain330] +[gw13] [ 68%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain345-method_chain345] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain346-method_chain346] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain348-method_chain348] +[gw12] [ 68%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain332-method_chain332] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain349-method_chain349] +[gw10] [ 69%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain341-method_chain341] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain342-method_chain342] +[gw16] [ 69%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain347-method_chain347] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain350-method_chain350] -[gw33] [ 65%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain322-method_chain322] +[gw19] [ 69%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain343-method_chain343] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain344-method_chain344] -[gw23] [ 65%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain320-method_chain320] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain342-method_chain342] -[gw38] [ 65%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain326-method_chain326] +[gw18] [ 69%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain340-method_chain340] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain352-method_chain352] +[gw14] [ 69%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain338-method_chain338] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain354-method_chain354] -[gw34] [ 66%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain315-method_chain315] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain340-method_chain340] -[gw22] [ 66%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain319-method_chain319] +[gw15] [ 70%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain334-method_chain334] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain351-method_chain351] -[gw40] [ 66%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain330-method_chain330] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain346-method_chain346] -[gw39] [ 66%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain327-method_chain327] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain352-method_chain352] -[gw21] [ 66%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain332-method_chain332] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain349-method_chain349] -[gw24] [ 67%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain331-method_chain331] +[gw17] [ 70%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain336-method_chain336] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain353-method_chain353] -[gw29] [ 67%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain339-method_chain339] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain361-method_chain361] -[gw41] [ 67%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain329-method_chain329] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain348-method_chain348] -[gw25] [ 67%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain337-method_chain337] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain360-method_chain360] -[gw27] [ 67%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain333-method_chain333] +[gw10] [ 70%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain342-method_chain342] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain358-method_chain358] +[gw13] [ 70%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain346-method_chain346] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain355-method_chain355] -[gw36] [ 67%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain336-method_chain336] +[gw12] [ 70%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain349-method_chain349] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain357-method_chain357] +[gw11] [ 70%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain348-method_chain348] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain356-method_chain356] -[gw20] [ 68%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain338-method_chain338] -[gw13] [ 68%] PASSED tests/test_binary.py::test_reldist +[gw18] [ 71%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain352-method_chain352] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain361-method_chain361] +[gw16] [ 71%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain350-method_chain350] +[gw19] [ 71%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain344-method_chain344] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain360-method_chain360] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain359-method_chain359] -tests/test_binary.py::test_k_nearest[downstream-False-opposite-last] -[gw28] [ 68%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain341-method_chain341] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain362-method_chain362] -[gw37] [ 68%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain345-method_chain345] +[gw15] [ 71%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain351-method_chain351] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain363-method_chain363] +[gw17] [ 71%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain353-method_chain353] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain364-method_chain364] -[gw3] [ 68%] PASSED tests/test_binary.py::test_intersect[opposite] -tests/test_binary.py::test_coverage[False] -[gw19] [ 69%] PASSED tests/test_binary.py::test_k_nearest[None-True-same-last] -tests/test_binary.py::test_k_nearest[None-True-False-last] -[gw23] [ 69%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain342-method_chain342] -[gw38] [ 69%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain354-method_chain354] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain368-method_chain368] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain369-method_chain369] -[gw34] [ 69%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain340-method_chain340] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain370-method_chain370] -[gw32] [ 69%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain335-method_chain335] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain358-method_chain358] -[gw31] [ 70%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain347-method_chain347] +[gw14] [ 72%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain354-method_chain354] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain362-method_chain362] +[gw10] [ 72%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain358-method_chain358] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain365-method_chain365] -[gw26] [ 70%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain334-method_chain334] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain357-method_chain357] -[gw22] [ 70%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain351-method_chain351] +[gw12] [ 72%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain357-method_chain357] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain367-method_chain367] +[gw18] [ 72%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain361-method_chain361] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain369-method_chain369] +[gw11] [ 72%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain356-method_chain356] +[gw16] [ 73%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain359-method_chain359] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain368-method_chain368] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain371-method_chain371] -[gw2] [ 70%] PASSED tests/test_binary.py::test_overlap[opposite] -tests/test_binary.py::test_intersect[False] -[gw30] [ 70%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain350-method_chain350] +[gw19] [ 73%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain360-method_chain360] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain370-method_chain370] +[gw15] [ 73%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain363-method_chain363] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain372-method_chain372] +[gw13] [ 73%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain355-method_chain355] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain366-method_chain366] -[gw35] [ 70%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain343-method_chain343] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain363-method_chain363] -[gw29] [ 71%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain361-method_chain361] +[gw14] [ 73%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain362-method_chain362] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain374-method_chain374] +[gw17] [ 74%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain364-method_chain364] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain373-method_chain373] +[gw10] [ 74%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain365-method_chain365] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain375-method_chain375] +[gw12] [ 74%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain367-method_chain367] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain376-method_chain376] -[gw25] [ 71%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain360-method_chain360] +[gw11] [ 74%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain368-method_chain368] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain378-method_chain378] -[gw39] [ 71%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain352-method_chain352] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain373-method_chain373] -[gw33] [ 71%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain344-method_chain344] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain367-method_chain367] -[gw21] [ 71%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain349-method_chain349] -[gw20] [ 72%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain359-method_chain359] +[gw18] [ 74%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain369-method_chain369] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain377-method_chain377] +[gw15] [ 74%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain372-method_chain372] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain381-method_chain381] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain374-method_chain374] -[gw24] [ 72%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain353-method_chain353] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain375-method_chain375] -[gw36] [ 72%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain356-method_chain356] +[gw19] [ 75%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain370-method_chain370] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain380-method_chain380] -[gw40] [ 72%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain346-method_chain346] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain372-method_chain372] -[gw28] [ 72%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain362-method_chain362] +[gw13] [ 75%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain366-method_chain366] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain382-method_chain382] +[gw14] [ 75%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain374-method_chain374] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain383-method_chain383] -[gw27] [ 73%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain355-method_chain355] +[gw16] [ 75%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain371-method_chain371] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain379-method_chain379] -[gw23] [ 73%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain368-method_chain368] +[gw17] [ 75%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain373-method_chain373] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain384-method_chain384] +[gw10] [ 76%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain375-method_chain375] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain385-method_chain385] +[gw6] [ 76%] PASSED tests/test_binary.py::test_nearest[upstream-False-False] +tests/test_binary.py::test_nearest[upstream-False-same] +[gw12] [ 76%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain376-method_chain376] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain386-method_chain386] -[gw34] [ 73%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain370-method_chain370] +[gw18] [ 76%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain377-method_chain377] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain388-method_chain388] -[gw32] [ 73%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain358-method_chain358] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain389-method_chain389] -[gw38] [ 73%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain369-method_chain369] +[gw5] [ 76%] PASSED tests/test_binary.py::test_join[opposite] +[gw11] [ 77%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain378-method_chain378] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain387-method_chain387] -[gw37] [ 74%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain364-method_chain364] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain384-method_chain384] -[gw31] [ 74%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain365-method_chain365] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain390-method_chain390] -[gw26] [ 74%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain357-method_chain357] +tests/test_binary.py::test_reldist +[gw15] [ 77%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain381-method_chain381] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain389-method_chain389] +[gw13] [ 77%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain382-method_chain382] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain391-method_chain391] -[gw30] [ 74%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain366-method_chain366] +[gw19] [ 77%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain380-method_chain380] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain390-method_chain390] +[gw10] [ 77%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain385-method_chain385] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain395-method_chain395] +[gw17] [ 77%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain384-method_chain384] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain394-method_chain394] -[gw22] [ 74%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain371-method_chain371] +[gw12] [ 78%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain386-method_chain386] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain396-method_chain396] +[gw16] [ 78%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain379-method_chain379] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain393-method_chain393] +[gw7] [ 78%] PASSED tests/test_binary.py::test_nearest[downstream-False-False] +tests/test_binary.py::test_nearest[downstream-False-same] +[gw18] [ 78%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain388-method_chain388] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain397-method_chain397] +[gw14] [ 78%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain383-method_chain383] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain392-method_chain392] -[gw35] [ 74%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain363-method_chain363] -[gw39] [ 75%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain373-method_chain373] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain395-method_chain395] +[gw11] [ 79%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain387-method_chain387] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain398-method_chain398] -[gw41] [ 75%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain348-method_chain348] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain377-method_chain377] -[gw33] [ 75%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain367-method_chain367] +[gw15] [ 79%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain389-method_chain389] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain399-method_chain399] -[gw24] [ 75%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain375-method_chain375] -[gw21] [ 75%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain374-method_chain374] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain402-method_chain402] +[gw13] [ 79%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain391-method_chain391] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain400-method_chain400] +[gw2] [ 79%] PASSED tests/test_binary.py::test_nearest[None-False-False] +[gw19] [ 79%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain390-method_chain390] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain401-method_chain401] -[gw29] [ 76%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain376-method_chain376] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain396-method_chain396] -[gw40] [ 76%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain372-method_chain372] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain404-method_chain404] -[gw36] [ 76%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain380-method_chain380] +tests/test_binary.py::test_nearest[None-False-same] +[gw17] [ 80%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain394-method_chain394] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain403-method_chain403] -[gw23] [ 76%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain386-method_chain386] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain407-method_chain407] -[gw32] [ 76%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain389-method_chain389] -[gw34] [ 77%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain388-method_chain388] +[gw12] [ 80%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain396-method_chain396] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain404-method_chain404] +[gw10] [ 80%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain395-method_chain395] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain402-method_chain402] +[gw16] [ 80%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain393-method_chain393] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain405-method_chain405] +[gw13] [ 80%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain400-method_chain400] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain410-method_chain410] +[gw15] [ 80%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain399-method_chain399] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain409-method_chain409] +[gw19] [ 81%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain401-method_chain401] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain411-method_chain411] +[gw11] [ 81%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain398-method_chain398] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain408-method_chain408] -[gw26] [ 77%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain391-method_chain391] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain413-method_chain413] -[gw20] [ 77%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain381-method_chain381] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain400-method_chain400] -[gw38] [ 77%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain387-method_chain387] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain410-method_chain410] -[gw25] [ 77%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain378-method_chain378] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain397-method_chain397] -[gw41] [ 77%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain377-method_chain377] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain418-method_chain418] -[gw27] [ 78%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain379-method_chain379] +[gw14] [ 81%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain392-method_chain392] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain407-method_chain407] +[gw18] [ 81%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain397-method_chain397] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain406-method_chain406] -[gw31] [ 78%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain390-method_chain390] +[gw17] [ 81%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain403-method_chain403] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain412-method_chain412] -[gw28] [ 78%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain383-method_chain383] -[gw37] [ 78%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain384-method_chain384] -[gw30] [ 78%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain394-method_chain394] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain405-method_chain405] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain411-method_chain411] +[gw12] [ 82%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain404-method_chain404] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain413-method_chain413] +[gw1] [ 82%] PASSED tests/test_binary.py::test_intersect[same] +tests/test_binary.py::test_intersect[opposite] +[gw10] [ 82%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain402-method_chain402] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain414-method_chain414] -[gw33] [ 79%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain399-method_chain399] +[gw16] [ 82%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain405-method_chain405] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain415-method_chain415] +[gw13] [ 82%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain410-method_chain410] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain416-method_chain416] +[gw15] [ 83%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain409-method_chain409] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain417-method_chain417] +[gw19] [ 83%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain411-method_chain411] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain418-method_chain418] +[gw11] [ 83%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain408-method_chain408] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain419-method_chain419] -[gw21] [ 79%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain401-method_chain401] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain421-method_chain421] -[gw12] [ 79%] PASSED tests/test_binary.py::test_join[False] -[gw24] [ 79%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain402-method_chain402] +[gw14] [ 83%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain407-method_chain407] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain420-method_chain420] -tests/test_binary.py::test_join[same] -[gw36] [ 79%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain403-method_chain403] -[gw40] [ 80%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain404-method_chain404] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain424-method_chain424] +[gw17] [ 83%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain412-method_chain412] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain422-method_chain422] +[gw18] [ 83%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain406-method_chain406] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain421-method_chain421] +[gw12] [ 84%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain413-method_chain413] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain423-method_chain423] -[gw35] [ 80%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain395-method_chain395] -[gw11] [ 80%] PASSED tests/test_binary.py::test_nearest[downstream-False-opposite] -[gw39] [ 80%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain398-method_chain398] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain416-method_chain416] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain417-method_chain417] -tests/test_binary.py::test_jaccard[False] -[gw38] [ 80%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain410-method_chain410] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain430-method_chain430] -[gw9] [ 80%] PASSED tests/test_binary.py::test_nearest[upstream-False-opposite] -[gw32] [ 81%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain409-method_chain409] -[gw23] [ 81%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain407-method_chain407] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain426-method_chain426] +[gw16] [ 84%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain415-method_chain415] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain425-method_chain425] -tests/test_binary.py::test_nearest[downstream-True-False] -[gw34] [ 81%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain408-method_chain408] +[gw10] [ 84%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain414-method_chain414] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain424-method_chain424] +[gw15] [ 84%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain417-method_chain417] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain427-method_chain427] -[gw26] [ 81%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain413-method_chain413] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain428-method_chain428] -[gw29] [ 81%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain396-method_chain396] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain422-method_chain422] -[gw22] [ 82%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain392-method_chain392] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain415-method_chain415] -[gw31] [ 82%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain412-method_chain412] -[gw20] [ 82%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain400-method_chain400] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain434-method_chain434] +[gw13] [ 84%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain416-method_chain416] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain426-method_chain426] +[gw11] [ 85%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain419-method_chain419] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain429-method_chain429] -[gw37] [ 82%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain411-method_chain411] -[gw28] [ 82%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain405-method_chain405] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain436-method_chain436] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain435-method_chain435] -[gw33] [ 83%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain419-method_chain419] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain438-method_chain438] -[gw41] [ 83%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain418-method_chain418] +[gw19] [ 85%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain418-method_chain418] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain428-method_chain428] +[gw17] [ 85%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain422-method_chain422] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain431-method_chain431] +[gw14] [ 85%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain420-method_chain420] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain430-method_chain430] +[gw12] [ 85%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain423-method_chain423] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain433-method_chain433] +[gw18] [ 86%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain421-method_chain421] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain432-method_chain432] -[gw30] [ 83%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain414-method_chain414] +[gw10] [ 86%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain424-method_chain424] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain435-method_chain435] +[gw16] [ 86%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain425-method_chain425] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain434-method_chain434] +[gw13] [ 86%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain426-method_chain426] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain437-method_chain437] -[gw21] [ 83%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain421-method_chain421] +[gw0] [ 86%] PASSED tests/test_binary.py::test_set_union[False] +tests/test_binary.py::test_set_union[same] +[gw11] [ 87%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain429-method_chain429] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain438-method_chain438] +[gw17] [ 87%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain431-method_chain431] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain440-method_chain440] +[gw15] [ 87%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain427-method_chain427] +tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain436-method_chain436] +[gw19] [ 87%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain428-method_chain428] tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain439-method_chain439] -[gw27] [ 83%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain406-method_chain406] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain433-method_chain433] -[gw40] [ 83%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain423-method_chain423] -tests/test_getset_attr.py::test_getsetattr_fails -[gw40] [ 84%] PASSED tests/test_getset_attr.py::test_getsetattr_fails -tests/windows/test_windows.py::test_windows -[gw40] [ 84%] PASSED tests/windows/test_windows.py::test_windows -tests/windows/test_windows.py::test_windows2 -[gw40] [ 84%] PASSED tests/windows/test_windows.py::test_windows2 -[gw36] [ 84%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain424-method_chain424] +[gw14] [ 87%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain430-method_chain430] +tests/test_genomicfeatures.py::test_introns_single +[gw12] [ 87%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain433-method_chain433] tests/test_getset_attr.py::test_getsetattr -[gw36] [ 84%] PASSED tests/test_getset_attr.py::test_getsetattr -[gw39] [ 85%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain417-method_chain417] -tests/test_io.py::test_read_gtf -[gw39] [ 85%] PASSED tests/test_io.py::test_read_gtf -[gw7] [ 85%] PASSED tests/test_binary.py::test_nearest[None-False-opposite] -[gw8] [ 85%] PASSED tests/test_binary.py::test_nearest[upstream-True-opposite] -tests/test_binary.py::test_nearest[upstream-True-False] -[gw35] [ 85%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain416-method_chain416] -[gw32] [ 86%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain426-method_chain426] -tests/test_binary.py::test_nearest[upstream-False-False] +[gw12] [ 88%] PASSED tests/test_getset_attr.py::test_getsetattr +tests/test_unary.py::test_merge[False] +[gw10] [ 88%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain435-method_chain435] tests/test_getset_attr.py::test_getsetattr_with_str -tests/test_pickle.py::test_pickle -[gw32] [ 86%] PASSED tests/test_pickle.py::test_pickle -[gw35] [ 86%] PASSED tests/test_getset_attr.py::test_getsetattr_with_str -[gw23] [ 86%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain425-method_chain425] -[gw29] [ 86%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain422-method_chain422] -tests/test_unary.py::test_cluster[True] -[gw24] [ 87%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain420-method_chain420] -tests/test_stranded.py::test_stranded -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain440-method_chain440] -[gw23] [ 87%] PASSED tests/test_stranded.py::test_stranded -[gw22] [ 87%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain415-method_chain415] +[gw10] [ 88%] PASSED tests/test_getset_attr.py::test_getsetattr_with_str tests/test_unary.py::test_cluster[False] -[gw25] [ 87%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain397-method_chain397] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain431-method_chain431] -[gw33] [ 87%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain438-method_chain438] -tests/test_unary.py::test_windows -[gw28] [ 87%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain435-method_chain435] -[gw31] [ 88%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain434-method_chain434] +[gw13] [ 88%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain437-method_chain437] +tests/test_io.py::test_read_gff3 +[gw13] [ 88%] PASSED tests/test_io.py::test_read_gff3 +tests/test_unary.py::test_cluster_by[False] +[gw4] [ 89%] PASSED tests/test_binary.py::test_k_nearest[downstream-True-opposite-last] +tests/test_binary.py::test_k_nearest[downstream-True-same-last] +[gw9] [ 89%] PASSED tests/test_binary.py::test_k_nearest[upstream-True-opposite-last] +[gw16] [ 89%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain434-method_chain434] +tests/test_binary.py::test_k_nearest[upstream-True-same-last] +tests/test_io.py::test_read_gtf +[gw16] [ 89%] PASSED tests/test_io.py::test_read_gtf tests/test_unary.py::test_merge_by[False] -tests/test_unary.py::test_cluster_by[True] -[gw37] [ 88%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain436-method_chain436] -tests/test_unary.py::test_merge_by[True] -[gw30] [ 88%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain437-method_chain437] -tests/test_unary.py::test_init[False] -[gw38] [ 88%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain430-method_chain430] +[gw11] [ 89%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain438-method_chain438] tests/test_io.py::test_read_bed -[gw38] [ 88%] PASSED tests/test_io.py::test_read_bed -[gw26] [ 89%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain428-method_chain428] -tests/test_unary.py::test_merge[False] -[gw21] [ 89%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain439-method_chain439] +[gw11] [ 90%] PASSED tests/test_io.py::test_read_bed +tests/test_unary.py::test_init[True] +[gw17] [ 90%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain440-method_chain440] +[gw18] [ 90%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain432-method_chain432] +tests/test_pickle.py::test_pickle +tests/test_getset_attr.py::test_getsetattr_fails +[gw17] [ 90%] PASSED tests/test_pickle.py::test_pickle tests/test_unary.py::test_getitem -[gw10] [ 89%] PASSED tests/test_binary.py::test_nearest[downstream-True-opposite] -[gw20] [ 89%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain429-method_chain429] -[gw24] [ 89%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain440-method_chain440] -tests/test_binary.py::test_nearest[downstream-False-False] -tests/test_unary.py::test_cluster_by[False] -[gw34] [ 90%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain427-method_chain427] -tests/test_unary.py::test_merge[True] -[gw27] [ 90%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain433-method_chain433] +[gw18] [ 90%] PASSED tests/test_getset_attr.py::test_getsetattr_fails tests/test_unary.py::test_summary -[gw0] [ 90%] PASSED tests/test_binary.py::test_set_intersect[same] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain249-method_chain249] -[gw41] [ 90%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain432-method_chain432] -tests/test_unary.py::test_init[True] -[gw25] [ 90%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain431-method_chain431] -[gw6] [ 90%] PASSED tests/test_binary.py::test_nearest[None-True-opposite] -tests/test_binary.py::test_nearest[None-False-False] -[gw0] [ 91%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain249-method_chain249] -[gw30] [ 91%] PASSED tests/test_unary.py::test_init[False] -[gw41] [ 91%] PASSED tests/test_unary.py::test_init[True] -[gw1] [ 91%] PASSED tests/test_binary.py::test_set_union[same] +[gw15] [ 90%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain436-method_chain436] +tests/test_stranded.py::test_stranded +[gw15] [ 91%] PASSED tests/test_stranded.py::test_stranded +[gw14] [ 91%] PASSED tests/test_genomicfeatures.py::test_introns_single +tests/test_unary.py::test_merge[True] +[gw19] [ 91%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain439-method_chain439] +tests/test_stranded.py::test_unstrand +[gw19] [ 91%] PASSED tests/test_stranded.py::test_unstrand +[gw11] [ 91%] PASSED tests/test_unary.py::test_init[True] +tests/test_unary.py::test_init[False] +[gw8] [ 92%] PASSED tests/test_binary.py::test_k_nearest[None-True-opposite-last] +tests/test_binary.py::test_k_nearest[None-True-same-last] +[gw3] [ 92%] PASSED tests/test_binary.py::test_subtraction[same] +[gw5] [ 92%] PASSED tests/test_binary.py::test_reldist +tests/test_binary.py::test_k_nearest[downstream-False-opposite-last] +tests/test_binary.py::test_subtraction[opposite] +[gw11] [ 92%] PASSED tests/test_unary.py::test_init[False] +[gw17] [ 92%] PASSED tests/test_unary.py::test_getitem +tests/windows/test_windows.py::test_windows +[gw17] [ 93%] PASSED tests/windows/test_windows.py::test_windows +[gw6] [ 93%] PASSED tests/test_binary.py::test_nearest[upstream-False-same] +tests/test_binary.py::test_nearest[upstream-False-opposite] +[gw7] [ 93%] PASSED tests/test_binary.py::test_nearest[downstream-False-same] +tests/test_binary.py::test_nearest[downstream-False-opposite] +[gw1] [ 93%] PASSED tests/test_binary.py::test_intersect[opposite] +tests/test_binary.py::test_coverage[False] +[gw2] [ 93%] PASSED tests/test_binary.py::test_nearest[None-False-same] +tests/test_binary.py::test_nearest[None-False-opposite] +[gw18] [ 93%] PASSED tests/test_unary.py::test_summary +tests/windows/test_windows.py::test_windows2 +[gw18] [ 94%] PASSED tests/windows/test_windows.py::test_windows2 +[gw12] [ 94%] PASSED tests/test_unary.py::test_merge[False] +tests/test_unary.py::test_cluster[True] +[gw16] [ 94%] PASSED tests/test_unary.py::test_merge_by[False] +tests/test_unary.py::test_windows +[gw14] [ 94%] PASSED tests/test_unary.py::test_merge[True] +[gw0] [ 94%] PASSED tests/test_binary.py::test_set_union[same] tests/test_binary.py::test_overlap[False] -[gw16] [ 91%] PASSED tests/test_binary.py::test_k_nearest[upstream-False-False-last] -tests/test_binary.py::test_k_nearest[upstream-True-opposite-last] -[gw21] [ 92%] PASSED tests/test_unary.py::test_getitem -[gw2] [ 92%] PASSED tests/test_binary.py::test_intersect[False] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain393-method_chain393] -[gw14] [ 92%] PASSED tests/test_binary.py::test_k_nearest[downstream-False-False-last] -tests/test_binary.py::test_k_nearest[downstream-True-opposite-last] -[gw4] [ 92%] PASSED tests/test_binary.py::test_coverage[opposite] -[gw2] [ 92%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain393-method_chain393] -tests/test_binary.py::test_subtraction[same] -[gw13] [ 93%] PASSED tests/test_binary.py::test_k_nearest[downstream-False-opposite-last] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain382-method_chain382] -[gw12] [ 93%] PASSED tests/test_binary.py::test_join[same] -tests/test_genomicfeatures.py::test_introns_single -[gw27] [ 93%] PASSED tests/test_unary.py::test_summary -[gw18] [ 93%] PASSED tests/test_binary.py::test_k_nearest[None-False-False-last] -tests/test_binary.py::test_k_nearest[None-True-opposite-last] -[gw13] [ 93%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain382-method_chain382] -[gw5] [ 93%] PASSED tests/test_binary.py::test_subtraction[False] -tests/test_binary.py::test_nearest[None-True-False] -[gw12] [ 94%] PASSED tests/test_genomicfeatures.py::test_introns_single -[gw11] [ 94%] PASSED tests/test_binary.py::test_jaccard[False] -tests/test_io.py::test_read_gff3 -[gw11] [ 94%] PASSED tests/test_io.py::test_read_gff3 -[gw26] [ 94%] PASSED tests/test_unary.py::test_merge[False] -[gw8] [ 94%] PASSED tests/test_binary.py::test_nearest[upstream-False-False] -[gw3] [ 95%] PASSED tests/test_binary.py::test_coverage[False] -tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain385-method_chain385] -[gw15] [ 95%] PASSED tests/test_binary.py::test_k_nearest[downstream-True-False-last] +[gw10] [ 95%] PASSED tests/test_unary.py::test_cluster[False] +tests/test_unary.py::test_cluster_by[True] +[gw4] [ 95%] PASSED tests/test_binary.py::test_k_nearest[downstream-True-same-last] +tests/test_binary.py::test_k_nearest[downstream-True-False-last] +[gw6] [ 95%] PASSED tests/test_binary.py::test_nearest[upstream-False-opposite] +tests/test_binary.py::test_nearest[downstream-True-False] +[gw7] [ 95%] PASSED tests/test_binary.py::test_nearest[downstream-False-opposite] +tests/test_binary.py::test_jaccard[False] +[gw5] [ 95%] PASSED tests/test_binary.py::test_k_nearest[downstream-False-opposite-last] +[gw9] [ 96%] PASSED tests/test_binary.py::test_k_nearest[upstream-True-same-last] +tests/test_binary.py::test_k_nearest[upstream-True-False-last] +[gw2] [ 96%] PASSED tests/test_binary.py::test_nearest[None-False-opposite] +tests/test_binary.py::test_nearest[upstream-True-False] +[gw3] [ 96%] PASSED tests/test_binary.py::test_subtraction[opposite] +tests/test_binary.py::test_subtraction[False] +[gw8] [ 96%] PASSED tests/test_binary.py::test_k_nearest[None-True-same-last] +tests/test_binary.py::test_k_nearest[None-True-False-last] +[gw13] [ 96%] PASSED tests/test_unary.py::test_cluster_by[False] +tests/test_unary.py::test_merge_by[True] +[gw0] [ 96%] PASSED tests/test_binary.py::test_overlap[False] +[gw1] [ 97%] PASSED tests/test_binary.py::test_coverage[False] +[gw16] [ 97%] PASSED tests/test_unary.py::test_windows +[gw12] [ 97%] PASSED tests/test_unary.py::test_cluster[True] +[gw7] [ 97%] PASSED tests/test_binary.py::test_jaccard[False] +[gw6] [ 97%] PASSED tests/test_binary.py::test_nearest[downstream-True-False] +[gw10] [ 98%] PASSED tests/test_unary.py::test_cluster_by[True] +[gw2] [ 98%] PASSED tests/test_binary.py::test_nearest[upstream-True-False] +[gw13] [ 98%] PASSED tests/test_unary.py::test_merge_by[True] +[gw4] [ 98%] PASSED tests/test_binary.py::test_k_nearest[downstream-True-False-last] tests/test_binary.py::test_k_nearest[upstream-False-opposite-last] -[gw9] [ 95%] PASSED tests/test_binary.py::test_nearest[downstream-True-False] -tests/test_stranded.py::test_unstrand -[gw9] [ 95%] PASSED tests/test_stranded.py::test_unstrand -[gw10] [ 95%] PASSED tests/test_binary.py::test_nearest[downstream-False-False] -[gw34] [ 96%] PASSED tests/test_unary.py::test_merge[True] -[gw28] [ 96%] PASSED tests/test_unary.py::test_merge_by[False] -[gw7] [ 96%] PASSED tests/test_binary.py::test_nearest[upstream-True-False] -[gw3] [ 96%] PASSED tests/test_do_not_error.py::test_three_in_a_row[strandedness_chain385-method_chain385] -[gw37] [ 96%] PASSED tests/test_unary.py::test_merge_by[True] -[gw33] [ 96%] PASSED tests/test_unary.py::test_windows -[gw17] [ 97%] PASSED tests/test_binary.py::test_k_nearest[upstream-True-False-last] +[gw3] [ 98%] PASSED tests/test_binary.py::test_subtraction[False] +tests/test_binary.py::test_nearest[None-True-False] +[gw9] [ 99%] PASSED tests/test_binary.py::test_k_nearest[upstream-True-False-last] tests/test_binary.py::test_k_nearest[None-False-opposite-last] -[gw1] [ 97%] PASSED tests/test_binary.py::test_overlap[False] -[gw6] [ 97%] PASSED tests/test_binary.py::test_nearest[None-False-False] -[gw29] [ 97%] PASSED tests/test_unary.py::test_cluster[True] -[gw19] [ 97%] PASSED tests/test_binary.py::test_k_nearest[None-True-False-last] +[gw8] [ 99%] PASSED tests/test_binary.py::test_k_nearest[None-True-False-last] tests/test_binary.py::test_k_nearest_1_vs_nearest -[gw22] [ 98%] PASSED tests/test_unary.py::test_cluster[False] -[gw31] [ 98%] PASSED tests/test_unary.py::test_cluster_by[True] -[gw16] [ 98%] PASSED tests/test_binary.py::test_k_nearest[upstream-True-opposite-last] -[gw14] [ 98%] PASSED tests/test_binary.py::test_k_nearest[downstream-True-opposite-last] -[gw5] [ 98%] PASSED tests/test_binary.py::test_nearest[None-True-False] -[gw15] [ 99%] PASSED tests/test_binary.py::test_k_nearest[upstream-False-opposite-last] -[gw4] [ 99%] PASSED tests/test_binary.py::test_subtraction[same] -[gw20] [ 99%] PASSED tests/test_unary.py::test_cluster_by[False] -[gw18] [ 99%] PASSED tests/test_binary.py::test_k_nearest[None-True-opposite-last] -[gw17] [ 99%] PASSED tests/test_binary.py::test_k_nearest[None-False-opposite-last] -[gw19] [100%] PASSED tests/test_binary.py::test_k_nearest_1_vs_nearest +[gw4] [ 99%] PASSED tests/test_binary.py::test_k_nearest[upstream-False-opposite-last] +[gw3] [ 99%] PASSED tests/test_binary.py::test_nearest[None-True-False] +[gw9] [ 99%] PASSED tests/test_binary.py::test_k_nearest[None-False-opposite-last] +[gw8] [100%] PASSED tests/test_binary.py::test_k_nearest_1_vs_nearest =============================== warnings summary =============================== tests/conftest.py:83 /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/conftest.py:83: SyntaxWarning: invalid escape sequence '\s' sep="\s+", -pyranges/__init__.py:18: 43 warnings +pyranges/__init__.py:18: 21 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/__init__.py:18: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html import pkg_resources -tests/test_binary.py:118: 42 warnings +tests/test_binary.py:118: 20 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_binary.py:118: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) -tests/test_binary.py:139: 42 warnings +tests/test_binary.py:139: 20 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_binary.py:139: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) -tests/test_binary.py:160: 42 warnings +tests/test_binary.py:160: 20 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_binary.py:160: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) -tests/test_binary.py:187: 42 warnings +tests/test_binary.py:187: 20 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_binary.py:187: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) -tests/test_binary.py:212: 42 warnings +tests/test_binary.py:212: 20 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_binary.py:212: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) -tests/test_binary.py:291: 42 warnings +tests/test_binary.py:291: 20 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_binary.py:291: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) -tests/test_binary.py:329: 42 warnings +tests/test_binary.py:329: 20 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_binary.py:329: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) -tests/test_binary.py:368: 42 warnings +tests/test_binary.py:368: 20 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_binary.py:368: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) -tests/test_binary.py:392: 42 warnings +tests/test_binary.py:392: 20 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_binary.py:392: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) -tests/test_binary.py:426: 42 warnings +tests/test_binary.py:426: 20 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_binary.py:426: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) -tests/test_binary.py:516: 42 warnings +tests/test_binary.py:516: 20 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_binary.py:516: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) -tests/test_binary.py:579: 42 warnings +tests/test_binary.py:579: 20 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_binary.py:579: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) -pyranges/methods/init.py:60: 210 warnings +pyranges/methods/init.py:60: 100 warnings .pybuild/cpython3_3.12_pyranges/build/tests/test_change_chromosome_custom.py: 2 warnings .pybuild/cpython3_3.12_pyranges/build/tests/test_concat.py: 8 warnings -.pybuild/cpython3_3.12_pyranges/build/tests/test_count_overlaps.py: 1 warning .pybuild/cpython3_3.12_pyranges/build/tests/data/test_data.py: 9 warnings -.pybuild/cpython3_3.12_pyranges/build/tests/test_do_not_error.py: 159782 warnings -.pybuild/cpython3_3.12_pyranges/build/tests/test_binary.py: 160279 warnings +.pybuild/cpython3_3.12_pyranges/build/tests/test_count_overlaps.py: 1 warning +.pybuild/cpython3_3.12_pyranges/build/tests/test_do_not_error.py: 160479 warnings +.pybuild/cpython3_3.12_pyranges/build/tests/test_binary.py: 158809 warnings .pybuild/cpython3_3.12_pyranges/build/tests/test_getset_attr.py: 3 warnings -.pybuild/cpython3_3.12_pyranges/build/tests/windows/test_windows.py: 2 warnings .pybuild/cpython3_3.12_pyranges/build/tests/test_io.py: 4 warnings .pybuild/cpython3_3.12_pyranges/build/tests/test_pickle.py: 1 warning .pybuild/cpython3_3.12_pyranges/build/tests/test_stranded.py: 6 warnings -.pybuild/cpython3_3.12_pyranges/build/tests/test_unary.py: 24083 warnings .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py: 358 warnings +.pybuild/cpython3_3.12_pyranges/build/tests/test_unary.py: 23739 warnings +.pybuild/cpython3_3.12_pyranges/build/tests/windows/test_windows.py: 2 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/methods/init.py:60: FutureWarning: The default of observed=False is deprecated and will be changed to True in a future version of pandas. Pass observed=False to retain current behavior or observed=True to adopt the future default and silence this warning. return {k: v for k, v in df.groupby(grpby_key)} -pyranges/methods/init.py:189: 168 warnings +pyranges/methods/init.py:189: 80 warnings .pybuild/cpython3_3.12_pyranges/build/tests/test_change_chromosome_custom.py: 1 warning .pybuild/cpython3_3.12_pyranges/build/tests/test_concat.py: 7 warnings -.pybuild/cpython3_3.12_pyranges/build/tests/test_do_not_error.py: 4408 warnings +.pybuild/cpython3_3.12_pyranges/build/tests/test_do_not_error.py: 4387 warnings .pybuild/cpython3_3.12_pyranges/build/tests/test_binary.py: 2000 warnings .pybuild/cpython3_3.12_pyranges/build/tests/test_stranded.py: 2 warnings -.pybuild/cpython3_3.12_pyranges/build/tests/test_unary.py: 6391 warnings +.pybuild/cpython3_3.12_pyranges/build/tests/test_unary.py: 6249 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/methods/init.py:189: FutureWarning: The default of observed=False is deprecated and will be changed to True in a future version of pandas. Pass observed=False to retain current behavior or observed=True to adopt the future default and silence this warning. empty_removed = df.groupby("Chromosome") -tests/test_do_not_error.py:46: 42 warnings +tests/test_do_not_error.py:46: 20 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_do_not_error.py:46: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) -tests/test_unary.py:35: 42 warnings +tests/test_unary.py:35: 20 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_unary.py:35: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) -tests/test_unary.py:100: 42 warnings +tests/test_unary.py:100: 20 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_unary.py:100: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) -tests/test_unary.py:163: 42 warnings +tests/test_unary.py:163: 20 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_unary.py:163: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) -tests/test_unary.py:205: 42 warnings +tests/test_unary.py:205: 20 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_unary.py:205: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) -tests/test_unary.py:234: 42 warnings +tests/test_unary.py:234: 20 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_unary.py:234: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) -tests/test_unary.py:272: 42 warnings +tests/test_unary.py:272: 20 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_unary.py:272: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) -tests/test_unary.py:287: 42 warnings +tests/test_unary.py:287: 20 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_unary.py:287: HypothesisDeprecationWarning: The return_value health check is deprecated, because this is always an error. @settings( -tests/test_unary.py:315: 42 warnings +tests/test_unary.py:315: 20 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/tests/test_unary.py:315: HypothesisDeprecationWarning: `HealthCheck.all()` is deprecated; use `list(HealthCheck)` instead. The `hypothesis codemod` command-line tool can automatically refactor your code to fix this warning. suppress_health_check=HealthCheck.all()) -.pybuild/cpython3_3.12_pyranges/build/tests/test_concat.py::test_concat_unstranded_stranded - /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/methods/concat.py:47: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[NaN, NaN, NaN, '+', '-'] - Categories (3, object): ['+', '-', '.']' has dtype incompatible with category, please explicitly cast to a compatible dtype first. - v.loc[:, "Strand"] = type_v.cat.add_categories(["."]) - .pybuild/cpython3_3.12_pyranges/build/tests/test_concat.py::test_concat_stranded_unstranded /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/methods/concat.py:47: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '['+', '+', '-', NaN, NaN] Categories (3, object): ['+', '-', '.']' has dtype incompatible with category, please explicitly cast to a compatible dtype first. v.loc[:, "Strand"] = type_v.cat.add_categories(["."]) .pybuild/cpython3_3.12_pyranges/build/tests/test_concat.py: 1 warning -.pybuild/cpython3_3.12_pyranges/build/tests/test_do_not_error.py: 3073 warnings +.pybuild/cpython3_3.12_pyranges/build/tests/test_do_not_error.py: 3027 warnings .pybuild/cpython3_3.12_pyranges/build/tests/test_stranded.py: 2 warnings .pybuild/cpython3_3.12_pyranges/build/tests/test_genomicfeatures.py: 119 warnings -.pybuild/cpython3_3.12_pyranges/build/tests/test_unary.py: 5391 warnings +.pybuild/cpython3_3.12_pyranges/build/tests/test_unary.py: 5249 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/methods/init.py:187: FutureWarning: The default of observed=False is deprecated and will be changed to True in a future version of pandas. Pass observed=False to retain current behavior or observed=True to adopt the future default and silence this warning. empty_removed = df.groupby(["Chromosome", "Strand"]) -.pybuild/cpython3_3.12_pyranges/build/tests/test_do_not_error.py: 7007 warnings -.pybuild/cpython3_3.12_pyranges/build/tests/test_binary.py: 16456 warnings -.pybuild/cpython3_3.12_pyranges/build/tests/test_unary.py: 15688 warnings +.pybuild/cpython3_3.12_pyranges/build/tests/test_concat.py::test_concat_unstranded_stranded + /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/methods/concat.py:47: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[NaN, NaN, NaN, '+', '-'] + Categories (3, object): ['+', '-', '.']' has dtype incompatible with category, please explicitly cast to a compatible dtype first. + v.loc[:, "Strand"] = type_v.cat.add_categories(["."]) + +.pybuild/cpython3_3.12_pyranges/build/tests/test_do_not_error.py: 8138 warnings +.pybuild/cpython3_3.12_pyranges/build/tests/test_binary.py: 14659 warnings +.pybuild/cpython3_3.12_pyranges/build/tests/test_unary.py: 16076 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/tostring2.py:31: FutureWarning: The behavior of DataFrame concatenation with empty or all-NA entries is deprecated. In a future version, this will no longer exclude empty or all-NA columns when determining the result dtypes. To retain the old behavior, exclude the relevant entries before the concat operation. df = pd.concat([plus, minus]) -.pybuild/cpython3_3.12_pyranges/build/tests/test_do_not_error.py: 1474 warnings +.pybuild/cpython3_3.12_pyranges/build/tests/test_do_not_error.py: 1408 warnings /build/reproducible-path/pyranges-0.0.111+ds/.pybuild/cpython3_3.12_pyranges/build/pyranges/pyranges.py:3779: FutureWarning: The behavior of Series.replace (and DataFrame.replace) with CategoricalDtype is deprecated. In a future version, replace will only be used for cases that preserve the categories. To change the categories, use ser.cat.rename_categories instead. other.Strand = other.Strand.replace({"+": "-", "-": "+"}) @@ -5212,76 +38362,22 @@ for _, gdf in natsorted(df.groupby(groupby)): -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html -=============== 531 passed, 412060 warnings in 754.08s (0:12:34) =============== - create-stamp debian/debhelper-build-stamp - dh_testroot -O--buildsystem=pybuild - dh_prep -O--buildsystem=pybuild - dh_auto_install --destdir=debian/python3-pyranges/ -O--buildsystem=pybuild -I: pybuild base:311: /usr/bin/python3.13 setup.py install --root /build/reproducible-path/pyranges-0.0.111+ds/debian/python3-pyranges -/usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. -!! - - ******************************************************************************** - Please avoid running ``setup.py`` directly. - Instead, use pypa/build, pypa/installer or other - standards-based tools. - - See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. - ******************************************************************************** - -!! - self.initialize_options() -/usr/lib/python3.13/dist-packages/tests/conftest.py:83: SyntaxWarning: invalid escape sequence '\s' -I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/pyranges-0.0.111+ds/debian/python3-pyranges -/usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. -!! - - ******************************************************************************** - Please avoid running ``setup.py`` directly. - Instead, use pypa/build, pypa/installer or other - standards-based tools. - - See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. - ******************************************************************************** - -!! - self.initialize_options() -/usr/lib/python3.12/dist-packages/tests/conftest.py:83: SyntaxWarning: invalid escape sequence '\s' - debian/rules execute_after_dh_install -make[1]: Entering directory '/build/reproducible-path/pyranges-0.0.111+ds' -find debian/ -name *.bam* | xargs rm -rf -find debian/ -name 'hi' | xargs rm -rf -find debian/ -name '.hypothesis' | xargs rm -rf -make[1]: Leaving directory '/build/reproducible-path/pyranges-0.0.111+ds' - dh_installdocs -O--buildsystem=pybuild - dh_installchangelogs -O--buildsystem=pybuild - dh_python3 -O--buildsystem=pybuild - dh_installsystemduser -O--buildsystem=pybuild - dh_perl -O--buildsystem=pybuild - dh_link -O--buildsystem=pybuild - dh_strip_nondeterminism -O--buildsystem=pybuild - dh_compress -O--buildsystem=pybuild - dh_fixperms -O--buildsystem=pybuild - dh_missing -O--buildsystem=pybuild - dh_installdeb -O--buildsystem=pybuild - dh_gencontrol -O--buildsystem=pybuild - dh_md5sums -O--buildsystem=pybuild - dh_builddeb -O--buildsystem=pybuild -dpkg-deb: building package 'python3-pyranges' in '../python3-pyranges_0.0.111+ds-8_all.deb'. - dpkg-genbuildinfo --build=binary -O../pyranges_0.0.111+ds-8_amd64.buildinfo - dpkg-genchanges --build=binary -O../pyranges_0.0.111+ds-8_amd64.changes -dpkg-genchanges: info: binary-only upload (no source code included) - dpkg-source --after-build . -dpkg-source: info: using options from pyranges-0.0.111+ds/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ -dpkg-buildpackage: info: binary-only upload (no source included) -dpkg-genchanges: info: not including original source code in upload +============== 531 passed, 409566 warnings in 2555.40s (0:42:35) =============== +dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p "3.13 3.12" returned exit code 13 +make: *** [debian/rules:22: binary] Error 25 +dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2 I: copying local configuration +E: Failed autobuilding of package +I: user script /srv/workspace/pbuilder/3459097/tmp/hooks/C01_cleanup starting +debug output: disk usage on i-capture-the-hostname at Wed Jan 22 10:47:43 UTC 2025 +Filesystem Size Used Avail Use% Mounted on +tmpfs 40G 0 40G 0% /dev/shm + +I: user script /srv/workspace/pbuilder/3459097/tmp/hooks/C01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/2206354 and its subdirectories -I: Current time: Tue Feb 24 03:45:27 -12 2026 -I: pbuilder-time-stamp: 1771947927 +I: removing directory /srv/workspace/pbuilder/3459097 and its subdirectories Compressing the 2nd log... /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/amd64/pyranges_0.0.111+ds-8.diff: 95.3% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/amd64/pyranges_0.0.111+ds-8.diff.gz b2/build.log: 95.2% -- replaced with stdout Compressing the 1st log... b1/build.log: 92.0% -- replaced with stdout Wed Jan 22 10:47:49 UTC 2025 I: https://tests.reproducible-builds.org/debian/trixie/amd64/pyranges : reproducible ➤ FTBFS INSERT 0 1 INSERT 0 1 DELETE 1 [2025-01-22 10:47:50] INFO: Starting at 2025-01-22 10:47:50.066655 [2025-01-22 10:47:50] INFO: Generating the pages of 1 package(s) [2025-01-22 10:47:50] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/amd64/pyranges_0.0.111+ds-8.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/pyranges_0.0.111+ds-8.diff.gz is missing [2025-01-22 10:47:50] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/armhf/pyranges_0.0.111+ds-8.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/armhf/pyranges_0.0.111+ds-8.diff.gz is missing [2025-01-22 10:47:50] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/i386/pyranges_0.0.111+ds-8.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/i386/pyranges_0.0.111+ds-8.diff.gz is missing [2025-01-22 10:47:50] CRITICAL: https://tests.reproducible-builds.org/debian/trixie/amd64/pyranges didn't produce a buildlog, even though it has been built. [2025-01-22 10:47:50] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/armhf/pyranges_0.0.111+ds-8.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/armhf/pyranges_0.0.111+ds-8.diff.gz is missing [2025-01-22 10:47:50] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/i386/pyranges_0.0.111+ds-8.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/i386/pyranges_0.0.111+ds-8.diff.gz is missing [2025-01-22 10:47:50] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/armhf/pyranges_0.0.111+ds-4.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/armhf/pyranges_0.0.111+ds-4.diff.gz is missing [2025-01-22 10:47:50] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/i386/pyranges_0.0.111+ds-4.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/i386/pyranges_0.0.111+ds-4.diff.gz is missing [2025-01-22 10:47:50] CRITICAL: buildinfo not detected at /var/lib/jenkins/userContent/reproducible/debian/buildinfo/bullseye/armhf/pyranges_0.0.85+ds-1_armhf.buildinfo [2025-01-22 10:47:50] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/armhf/pyranges_0.0.85+ds-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/armhf/pyranges_0.0.85+ds-1.diff.gz is missing [2025-01-22 10:47:50] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/i386/pyranges_0.0.85+ds-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/i386/pyranges_0.0.85+ds-1.diff.gz is missing [2025-01-22 10:47:50] INFO: Finished at 2025-01-22 10:47:50.610424, took: 0:00:00.543774 Wed Jan 22 10:47:50 UTC 2025 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/trixie/amd64/pyranges.html [2025-01-22 10:47:51] INFO: Starting at 2025-01-22 10:47:51.073204 [2025-01-22 10:47:51] INFO: Scheduling packages in amd64/trixie [2025-01-22 10:47:51] INFO: jenkins scheduled in trixie/amd64, reason: 'reproducible ➤ FTBFS': pyranges [2025-01-22 10:47:51] INFO: Finished at 2025-01-22 10:47:51.843581, took: 0:00:00.770385 Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/amd64/pyranges_0.0.111+ds-8.rbuild.log: 91.7% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/amd64/pyranges_0.0.111+ds-8.rbuild.log.gz [2025-01-22 10:47:52] INFO: Starting at 2025-01-22 10:47:52.435343 [2025-01-22 10:47:52] INFO: Generating the pages of 1 package(s) [2025-01-22 10:47:52] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/amd64/pyranges_0.0.111+ds-8.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/pyranges_0.0.111+ds-8.diff.gz is missing [2025-01-22 10:47:52] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/armhf/pyranges_0.0.111+ds-8.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/armhf/pyranges_0.0.111+ds-8.diff.gz is missing [2025-01-22 10:47:52] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/i386/pyranges_0.0.111+ds-8.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/i386/pyranges_0.0.111+ds-8.diff.gz is missing [2025-01-22 10:47:53] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/armhf/pyranges_0.0.111+ds-8.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/armhf/pyranges_0.0.111+ds-8.diff.gz is missing [2025-01-22 10:47:53] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/i386/pyranges_0.0.111+ds-8.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/i386/pyranges_0.0.111+ds-8.diff.gz is missing [2025-01-22 10:47:53] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/armhf/pyranges_0.0.111+ds-4.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/armhf/pyranges_0.0.111+ds-4.diff.gz is missing [2025-01-22 10:47:53] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/i386/pyranges_0.0.111+ds-4.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/i386/pyranges_0.0.111+ds-4.diff.gz is missing [2025-01-22 10:47:53] CRITICAL: buildinfo not detected at /var/lib/jenkins/userContent/reproducible/debian/buildinfo/bullseye/armhf/pyranges_0.0.85+ds-1_armhf.buildinfo [2025-01-22 10:47:53] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/armhf/pyranges_0.0.85+ds-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/armhf/pyranges_0.0.85+ds-1.diff.gz is missing [2025-01-22 10:47:53] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/i386/pyranges_0.0.85+ds-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/i386/pyranges_0.0.85+ds-1.diff.gz is missing [2025-01-22 10:47:53] INFO: Finished at 2025-01-22 10:47:53.250169, took: 0:00:00.814837 All cleanup done. Wed Jan 22 10:47:53 UTC 2025 - total duration: 1h 52m 21s. Wed Jan 22 10:47:53 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-SiXQ9KWk, removing. Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 1h 52min 25.257s CPU time consumed: 9.604s