Running as unit: rb-build-amd64_4-45709.service ==================================================================================== Sat Feb 22 01:34:35 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_amd64_4) on jenkins, called using "ionos15-amd64 ionos1-amd64" as arguments. Sat Feb 22 01:34:35 UTC 2025 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-6nwdcOrw" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Sat Feb 22 01:34:35 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos15-amd64.debian.net is marked as down. Sat Feb 22 01:34:35 UTC 2025 - checking via ssh if ionos15-amd64.debian.net is up. removed '/tmp/read-only-fs-test-ZNYer2' Sat Feb 22 01:34:35 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos1-amd64.debian.net is marked as down. Sat Feb 22 01:34:35 UTC 2025 - checking via ssh if ionos1-amd64.debian.net is up. removed '/tmp/read-only-fs-test-CBFjsB' ok, let's check if biomaj3-cli is building anywhere yet… ok, biomaj3-cli is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of biomaj3-cli in unstable on amd64 on jenkins now. 1st build will be done on ionos15-amd64.debian.net. 2nd build will be done on ionos1-amd64.debian.net. ============================================================================= Sat Feb 22 01:34:40 UTC 2025 I: starting to build biomaj3-cli/unstable/amd64 on jenkins on '2025-02-22 01:34' Sat Feb 22 01:34:40 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_4/45709/console.log 1740188080 amd64 unstable biomaj3-cli Sat Feb 22 01:34:40 UTC 2025 I: Downloading source for unstable/biomaj3-cli=3.1.11-5 --2025-02-22 01:34:40-- http://deb.debian.org/debian/pool/main/b/biomaj3-cli/biomaj3-cli_3.1.11-5.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2140 (2.1K) [text/prs.lines.tag] Saving to: ‘biomaj3-cli_3.1.11-5.dsc’ 0K .. 100% 338M=0s 2025-02-22 01:34:40 (338 MB/s) - ‘biomaj3-cli_3.1.11-5.dsc’ saved [2140/2140] --2025-02-22 01:34:40-- http://deb.debian.org/debian/pool/main/b/biomaj3-cli/biomaj3-cli_3.1.11-5.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2140 (2.1K) [text/prs.lines.tag] Saving to: ‘biomaj3-cli_3.1.11-5.dsc’ 0K .. 100% 338M=0s 2025-02-22 01:34:40 (338 MB/s) - ‘biomaj3-cli_3.1.11-5.dsc’ saved [2140/2140] Sat Feb 22 01:34:41 UTC 2025 I: biomaj3-cli_3.1.11-5.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: biomaj3-cli Binary: python3-biomaj3-cli Architecture: all Version: 3.1.11-5 Maintainer: Debian Med Packaging Team Uploaders: Olivier Sallou Homepage: https://github.com/genouest/biomaj-cli Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/biomaj3-cli Vcs-Git: https://salsa.debian.org/med-team/biomaj3-cli.git Testsuite: autopkgtest-pkg-python Build-Depends: debhelper-compat (= 13), dh-python, python3-all, python3-requests, python3-setuptools, python3-biomaj3-core, python3-biomaj3-daemon Package-List: python3-biomaj3-cli deb python optional arch=all Checksums-Sha1: 518af72a743285d7153062262396c926bda532af 16508 biomaj3-cli_3.1.11.orig.tar.xz 4d0603c3fb8fbc02d1c91623c57cf6b933e45636 13308 biomaj3-cli_3.1.11-5.debian.tar.xz Checksums-Sha256: 4327f6c3186168cb8a76acf015cd29f0b11e37e0b735a84d9949aa32dd2f2940 16508 biomaj3-cli_3.1.11.orig.tar.xz c31d14e134fd70cf1cf9175477299880ecb8b4b521457a1fd13a2beb55c36ed3 13308 biomaj3-cli_3.1.11-5.debian.tar.xz Files: 8db1849df1ec7b5e182570b02fad8ef1 16508 biomaj3-cli_3.1.11.orig.tar.xz 36fe02c4deb6e3239e6ca0f12d6046ed 13308 biomaj3-cli_3.1.11-5.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEEj23hBDd/OxHnQXSHMfMURUShdBoFAmaJzO4RHHRjaGV0QGRl Ymlhbi5vcmcACgkQMfMURUShdBozeg/+MBgNHueVewcS4tX11Pl/pUuRsaTdxkAZ q/PBihRxl4pHcpDbmZRBL1A9+xCzwol1F0APP78eQemKHbaJTLSCWEgy6f1bmB0n MsMwyQr6/xlrt4yAlA0fL/LHicTYcqjVzGI2HdYxzBMWoADZ15C+R7sz7A3Bsinz X+NVsNr1elL+wLYDlfHEqBvirUPGTQI3K+vOHau8OOsg/XAoyUvqtxOyXXRHGZvH Te3LIWxiQ971wH5ThhgHwKtHeca9qebMThVpIZ+6gUB5nIY+SB8iZ8kXiN4Awm+0 GVqtlNUrEEEhuLVDtnFCiGU/Wqjo+2yn3Nk1hkcHebpBBwiUGqXcNhxNkR9c0AEN rK/SIJpATRFsGPZ6VGRICTS7ae2WrnBgsY76Ug+Ap9EpUx2IAU2w2gItir/+LGVQ T8O7crfdx8dkmBxBJOsH8GUpc9wDUkCOVCxLuEDrBJKmg8UZdANkoB8Ux62oomOe NnvEFe8EqHEm8+luTnICU4gl8QLI+tchffB6alanvHO3Y22eCCZJiZFMHTBWvNR2 e7ch1xuJ4h4HSYnUY0M/nFrJKGiWZDx/mRjMBtMoJmm5KB1H1oJhf1IZZUDOjC6m QPCgRTnf0eTP7r1tUOma7eMDafT1qOz/jQLMGFASmHlFrFFrzkWvlM/Ce2S2MC+R Kd3OUnI1gWY= =3+CB -----END PGP SIGNATURE----- Sat Feb 22 01:34:41 UTC 2025 I: Checking whether the package is not for us Sat Feb 22 01:34:41 UTC 2025 I: Starting 1st build on remote node ionos15-amd64.debian.net. Sat Feb 22 01:34:41 UTC 2025 I: Preparing to do remote build '1' on ionos15-amd64.debian.net. Sat Feb 22 01:34:41 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos15-amd64.debian.net is marked as down. Sat Feb 22 01:34:41 UTC 2025 - checking via ssh if ionos15-amd64.debian.net is up. removed '/tmp/read-only-fs-test-Mldiq0' ==================================================================================== Fri Mar 27 07:57:41 UTC 2026 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos15-amd64, called using "1 biomaj3-cli unstable /srv/reproducible-results/rbuild-debian/r-b-build.GJYO9PGR 3.1.11-5" as arguments. Fri Mar 27 07:57:41 UTC 2026 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-RA0hITNn" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Fri Mar 27 07:57:42 UTC 2026 I: Downloading source for unstable/biomaj3-cli=3.1.11-5 Reading package lists... NOTICE: 'biomaj3-cli' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/biomaj3-cli.git Please use: git clone https://salsa.debian.org/med-team/biomaj3-cli.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 32.0 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main biomaj3-cli 3.1.11-5 (dsc) [2140 B] Get:2 http://deb.debian.org/debian unstable/main biomaj3-cli 3.1.11-5 (tar) [16.5 kB] Get:3 http://deb.debian.org/debian unstable/main biomaj3-cli 3.1.11-5 (diff) [13.3 kB] Fetched 32.0 kB in 0s (1760 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'biomaj3-cli' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/biomaj3-cli.git Please use: git clone https://salsa.debian.org/med-team/biomaj3-cli.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 32.0 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main biomaj3-cli 3.1.11-5 (dsc) [2140 B] Get:2 http://deb.debian.org/debian unstable/main biomaj3-cli 3.1.11-5 (tar) [16.5 kB] Get:3 http://deb.debian.org/debian unstable/main biomaj3-cli 3.1.11-5 (diff) [13.3 kB] Fetched 32.0 kB in 0s (1760 kB/s) Download complete and in download only mode ============================================================================= Building biomaj3-cli in unstable on amd64 on ionos15-amd64 now. Date: Fri Mar 27 07:57:42 UTC 2026 Date UTC: Fri Mar 27 07:57:42 UTC 2026 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Thu Mar 26 19:57:42 -12 2026 I: pbuilder-time-stamp: 1774598262 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [biomaj3-cli_3.1.11-5.dsc] I: copying [./biomaj3-cli_3.1.11.orig.tar.xz] I: copying [./biomaj3-cli_3.1.11-5.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./biomaj3-cli_3.1.11-5.dsc: unsupported subcommand dpkg-source: info: extracting biomaj3-cli in biomaj3-cli-3.1.11 dpkg-source: info: unpacking biomaj3-cli_3.1.11.orig.tar.xz dpkg-source: info: unpacking biomaj3-cli_3.1.11-5.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2608634/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='1c454e1c8f354e13825b4ab7e7235bd3' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2608634' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.GJYO9PGR/pbuilderrc_ouSi --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.GJYO9PGR/b1 --logfile b1/build.log biomaj3-cli_3.1.11-5.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos15-amd64 6.12.9+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.9-1~bpo12+1 (2025-01-19) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2608634/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, python3-all, python3-requests, python3-setuptools, python3-biomaj3-core, python3-biomaj3-daemon dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19775 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-requests; however: Package python3-requests is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-biomaj3-core; however: Package python3-biomaj3-core is not installed. pbuilder-satisfydepends-dummy depends on python3-biomaj3-daemon; however: Package python3-biomaj3-daemon is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fonts-font-awesome{a} fonts-lato{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbrotli1{a} libcom-err2{a} libcurl3t64-gnutls{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgnutls30t64{a} libgssapi-krb5-2{a} libicu72{a} libidn2-0{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap2{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libnsl2{a} libp11-kit0{a} libpipeline1{a} libprotobuf32t64{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libtasn1-6{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} libyaml-0-2{a} m4{a} man-db{a} media-types{a} netbase{a} openssl{a} po-debconf{a} python3{a} python3-all{a} python3-async-timeout{a} python3-autocommand{a} python3-bcrypt{a} python3-biomaj3{a} python3-biomaj3-cli{a} python3-biomaj3-core{a} python3-biomaj3-daemon{a} python3-biomaj3-download{a} python3-biomaj3-process{a} python3-biomaj3-user{a} python3-biomaj3-zipkin{a} python3-blinker{a} python3-bson{a} python3-certifi{a} python3-chardet{a} python3-charset-normalizer{a} python3-click{a} python3-consul{a} python3-dateutil{a} python3-decorator{a} python3-defusedxml{a} python3-deprecated{a} python3-dnspython{a} python3-elasticsearch{a} python3-flask{a} python3-flask-cors{a} python3-ftputil{a} python3-humanfriendly{a} python3-idna{a} python3-inflect{a} python3-influxdb{a} python3-irodsclient{a} python3-itsdangerous{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-jinja2{a} python3-ldap3{a} python3-markupsafe{a} python3-minimal{a} python3-more-itertools{a} python3-msgpack{a} python3-packaging{a} python3-pika{a} python3-pkg-resources{a} python3-prettytable{a} python3-prometheus-client{a} python3-protobuf{a} python3-py-zipkin{a} python3-pyasn1{a} python3-pycurl{a} python3-pymongo{a} python3-pytz{a} python3-redis{a} python3-requests{a} python3-setuptools{a} python3-simpleeval{a} python3-tabulate{a} python3-tenacity{a} python3-typeguard{a} python3-typing-extensions{a} python3-tz{a} python3-urllib3{a} python3-wcwidth{a} python3-werkzeug{a} python3-wrapt{a} python3-yaml{a} python3-yapsy{a} python3-zipp{a} python3.12{a} python3.12-minimal{a} python3.13{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} sphinx-rtd-theme-common{a} tzdata{a} unzip{a} The following packages are RECOMMENDED but will NOT be installed: curl javascript-common krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx publicsuffix python3-asgiref python3-babel python3-bson-ext python3-cryptography python3-dotenv python3-gridfs python3-h2 python3-httpcore python3-httpx python3-openssl python3-pyinotify python3-pymongo-ext wget 0 packages upgraded, 154 newly installed, 0 to remove and 0 not upgraded. Need to get 50.6 MB of archives. After unpacking 197 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 fonts-lato all 2.015-1 [2780 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 libpython3.13-minimal amd64 3.13.2-1 [859 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.6.4-1 [106 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 python3.13-minimal amd64 3.13.2-1 [2205 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 python3-minimal amd64 3.13.1-2 [27.0 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 media-types all 11.0.0 [27.6 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 netbase all 6.4 [12.8 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 tzdata all 2025a-2 [259 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 libffi8 amd64 3.4.7-1 [23.9 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 readline-common all 8.2-6 [69.4 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 libreadline8t64 amd64 8.2-6 [169 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 libpython3.13-stdlib amd64 3.13.2-1 [1979 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 python3.13 amd64 3.13.2-1 [745 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 libpython3-stdlib amd64 3.13.1-2 [9952 B] Get: 15 http://deb.debian.org/debian unstable/main amd64 python3 amd64 3.13.1-2 [28.0 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 libpython3.12-minimal amd64 3.12.9-1 [817 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 python3.12-minimal amd64 3.12.9-1 [2163 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 openssl amd64 3.4.1-1 [1427 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 ca-certificates all 20241223 [164 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.1-1 [243 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-7 [1185 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40.4-4 [92.4 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-5 [294 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3 [493 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.17-3 [862 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.1-1 [770 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.24.1 [90.9 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-3 [539 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 41 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 42 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 libunistring5 amd64 1.3-1 [476 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 libicu72 amd64 72.1-6 [9421 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB] Get: 46 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.1-1 [1680 kB] Get: 47 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 48 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 49 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.24.1 [920 kB] Get: 50 http://deb.debian.org/debian unstable/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 python3-more-itertools all 10.6.0-1 [65.3 kB] Get: 52 http://deb.debian.org/debian unstable/main amd64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 53 http://deb.debian.org/debian unstable/main amd64 python3-typeguard all 4.4.1-1 [37.0 kB] Get: 54 http://deb.debian.org/debian unstable/main amd64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 55 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 56 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 57 http://deb.debian.org/debian unstable/main amd64 python3-pkg-resources all 75.8.0-1 [222 kB] Get: 58 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 59 http://deb.debian.org/debian unstable/main amd64 python3-zipp all 3.21.0-1 [10.6 kB] Get: 60 http://deb.debian.org/debian unstable/main amd64 python3-setuptools all 75.8.0-1 [724 kB] Get: 61 http://deb.debian.org/debian unstable/main amd64 dh-python all 6.20250108 [113 kB] Get: 62 http://deb.debian.org/debian unstable/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [517 kB] Get: 63 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b6 [302 kB] Get: 64 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.2-1 [24.0 kB] Get: 65 http://deb.debian.org/debian unstable/main amd64 libidn2-0 amd64 2.3.7-2+b1 [129 kB] Get: 66 http://deb.debian.org/debian unstable/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB] Get: 67 http://deb.debian.org/debian unstable/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get: 68 http://deb.debian.org/debian unstable/main amd64 libgnutls30t64 amd64 3.8.9-2 [1464 kB] Get: 69 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.21.3-4 [32.8 kB] Get: 70 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.21.3-4 [80.9 kB] Get: 71 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get: 72 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.21.3-4 [326 kB] Get: 73 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.21.3-4 [138 kB] Get: 74 http://deb.debian.org/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-8+b1 [19.9 kB] Get: 75 http://deb.debian.org/debian unstable/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-8+b1 [57.6 kB] Get: 76 http://deb.debian.org/debian unstable/main amd64 libldap2 amd64 2.6.9+dfsg-1 [192 kB] Get: 77 http://deb.debian.org/debian unstable/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB] Get: 78 http://deb.debian.org/debian unstable/main amd64 libnghttp3-9 amd64 1.6.0-2 [64.8 kB] Get: 79 http://deb.debian.org/debian unstable/main amd64 libngtcp2-16 amd64 1.9.1-1 [119 kB] Get: 80 http://deb.debian.org/debian unstable/main amd64 libngtcp2-crypto-gnutls8 amd64 1.9.1-1 [18.5 kB] Get: 81 http://deb.debian.org/debian unstable/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 82 http://deb.debian.org/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get: 83 http://deb.debian.org/debian unstable/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 84 http://deb.debian.org/debian unstable/main amd64 libcurl3t64-gnutls amd64 8.12.1-2 [365 kB] Get: 85 http://deb.debian.org/debian unstable/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 86 http://deb.debian.org/debian unstable/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 87 http://deb.debian.org/debian unstable/main amd64 libjs-sphinxdoc all 8.1.3-5 [30.5 kB] Get: 88 http://deb.debian.org/debian unstable/main amd64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 89 http://deb.debian.org/debian unstable/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.3+b1 [83.1 kB] Get: 90 http://deb.debian.org/debian unstable/main amd64 libnsl2 amd64 1.3.0-3+b3 [40.6 kB] Get: 91 http://deb.debian.org/debian unstable/main amd64 libprotobuf32t64 amd64 3.21.12-10+b4 [982 kB] Get: 92 http://deb.debian.org/debian unstable/main amd64 libpython3.12-stdlib amd64 3.12.9-1 [1974 kB] Get: 93 http://deb.debian.org/debian unstable/main amd64 libyaml-0-2 amd64 0.2.5-2 [52.5 kB] Get: 94 http://deb.debian.org/debian unstable/main amd64 python3.12 amd64 3.12.9-1 [681 kB] Get: 95 http://deb.debian.org/debian unstable/main amd64 python3-all amd64 3.13.1-2 [1056 B] Get: 96 http://deb.debian.org/debian unstable/main amd64 python3-async-timeout all 5.0.1-1 [8324 B] Get: 97 http://deb.debian.org/debian unstable/main amd64 python3-bcrypt amd64 4.2.0-2.1 [236 kB] Get: 98 http://deb.debian.org/debian unstable/main amd64 python3-certifi all 2025.1.31+ds-1 [9652 B] Get: 99 http://deb.debian.org/debian unstable/main amd64 python3-urllib3 all 2.3.0-1 [114 kB] Get: 100 http://deb.debian.org/debian unstable/main amd64 python3-elasticsearch all 7.17.6-1 [113 kB] Get: 101 http://deb.debian.org/debian unstable/main amd64 python3-charset-normalizer amd64 3.4.1-1 [142 kB] Get: 102 http://deb.debian.org/debian unstable/main amd64 python3-idna all 3.10-1 [42.0 kB] Get: 103 http://deb.debian.org/debian unstable/main amd64 python3-chardet all 5.2.0+dfsg-2 [108 kB] Get: 104 http://deb.debian.org/debian unstable/main amd64 python3-requests all 2.32.3+dfsg-4 [72.1 kB] Get: 105 http://deb.debian.org/debian unstable/main amd64 python3-biomaj3-core all 3.0.28-4 [25.1 kB] Get: 106 http://deb.debian.org/debian unstable/main amd64 python3-biomaj3-cli all 3.1.11-5 [18.9 kB] Get: 107 http://deb.debian.org/debian unstable/main amd64 python3-py-zipkin all 1.2.8-2 [36.4 kB] Get: 108 http://deb.debian.org/debian unstable/main amd64 python3-biomaj3-zipkin all 0.2.2-3 [15.1 kB] Get: 109 http://deb.debian.org/debian unstable/main amd64 python3-blinker all 1.9.0-1 [12.6 kB] Get: 110 http://deb.debian.org/debian unstable/main amd64 python3-click all 8.2.0-1 [98.7 kB] Get: 111 http://deb.debian.org/debian unstable/main amd64 python3-itsdangerous all 2.2.0-2 [18.1 kB] Get: 112 http://deb.debian.org/debian unstable/main amd64 python3-markupsafe amd64 2.1.5-1+b2 [13.9 kB] Get: 113 http://deb.debian.org/debian unstable/main amd64 python3-jinja2 all 3.1.5-2 [107 kB] Get: 114 http://deb.debian.org/debian unstable/main amd64 python3-werkzeug all 3.1.3-2 [207 kB] Get: 115 http://deb.debian.org/debian unstable/main amd64 python3-flask all 3.1.0-2 [106 kB] Get: 116 http://deb.debian.org/debian unstable/main amd64 python3-ftputil all 5.1.0-1 [40.4 kB] Get: 117 http://deb.debian.org/debian unstable/main amd64 python3-humanfriendly all 10.0-6 [85.6 kB] Get: 118 http://deb.debian.org/debian unstable/main amd64 python3-defusedxml all 0.7.1-3 [43.4 kB] Get: 119 http://deb.debian.org/debian unstable/main amd64 python3-wcwidth all 0.2.13+dfsg1-1 [24.9 kB] Get: 120 http://deb.debian.org/debian unstable/main amd64 python3-prettytable all 3.12.0-1 [39.5 kB] Get: 121 http://deb.debian.org/debian unstable/main amd64 python3-irodsclient all 3.0.0-1 [213 kB] Get: 122 http://deb.debian.org/debian unstable/main amd64 python3-pika all 1.3.2-1 [125 kB] Get: 123 http://deb.debian.org/debian unstable/main amd64 python3-decorator all 5.1.1-5 [15.1 kB] Get: 124 http://deb.debian.org/debian unstable/main amd64 python3-prometheus-client all 0.21.1+ds1-1 [44.9 kB] Get: 125 http://deb.debian.org/debian unstable/main amd64 python3-protobuf amd64 3.21.12-10+b4 [272 kB] Get: 126 http://deb.debian.org/debian unstable/main amd64 python3-pycurl amd64 7.45.4-1 [77.7 kB] Get: 127 http://deb.debian.org/debian unstable/main amd64 python3-wrapt amd64 1.15.0-4 [43.5 kB] Get: 128 http://deb.debian.org/debian unstable/main amd64 python3-deprecated all 1.2.18-1 [14.8 kB] Get: 129 http://deb.debian.org/debian unstable/main amd64 python3-packaging all 24.2-1 [55.3 kB] Get: 130 http://deb.debian.org/debian unstable/main amd64 python3-redis all 4.3.4-4 [185 kB] Get: 131 http://deb.debian.org/debian unstable/main amd64 python3-simpleeval all 1.0.3-1 [24.0 kB] Get: 132 http://deb.debian.org/debian unstable/main amd64 python3-tenacity all 8.4.2+really8.4.1-2 [46.0 kB] Get: 133 http://deb.debian.org/debian unstable/main amd64 python3-yaml amd64 6.0.2-1+b1 [178 kB] Get: 134 http://deb.debian.org/debian unstable/main amd64 python3-biomaj3-download all 3.2.12-2 [49.4 kB] Get: 135 http://deb.debian.org/debian unstable/main amd64 python3-biomaj3-process all 3.0.19-3 [25.3 kB] Get: 136 http://deb.debian.org/debian unstable/main amd64 python3-consul all 1.5.1+dfsg-1 [22.7 kB] Get: 137 http://deb.debian.org/debian unstable/main amd64 python3-pyasn1 all 0.6.1-1 [68.9 kB] Get: 138 http://deb.debian.org/debian unstable/main amd64 python3-ldap3 all 2.9.1-2 [235 kB] Get: 139 http://deb.debian.org/debian unstable/main amd64 python3-tabulate all 0.9.0-1 [45.9 kB] Get: 140 http://deb.debian.org/debian unstable/main amd64 python3-biomaj3-user all 3.0.12-2 [19.7 kB] Get: 141 http://deb.debian.org/debian unstable/main amd64 python3-dateutil all 2.9.0-3 [79.3 kB] Get: 142 http://deb.debian.org/debian unstable/main amd64 python3-msgpack amd64 1.0.3-3+b3 [112 kB] Get: 143 http://deb.debian.org/debian unstable/main amd64 python3-pytz all 2025.1-3 [150 kB] Get: 144 http://deb.debian.org/debian unstable/main amd64 python3-tz all 2025.1-3 [4004 B] Get: 145 http://deb.debian.org/debian unstable/main amd64 python3-influxdb all 5.3.2-5 [53.5 kB] Get: 146 http://deb.debian.org/debian unstable/main amd64 python3-bson all 4.10.1-5 [87.1 kB] Get: 147 http://deb.debian.org/debian unstable/main amd64 python3-dnspython all 2.7.0-1 [164 kB] Get: 148 http://deb.debian.org/debian unstable/main amd64 python3-pymongo all 4.10.1-5 [272 kB] Get: 149 http://deb.debian.org/debian unstable/main amd64 python3-yapsy all 1.12.2-3 [30.4 kB] Get: 150 http://deb.debian.org/debian unstable/main amd64 unzip amd64 6.0-28 [166 kB] Get: 151 http://deb.debian.org/debian unstable/main amd64 python3-biomaj3 all 3.1.24-2 [65.2 kB] Get: 152 http://deb.debian.org/debian unstable/main amd64 sphinx-rtd-theme-common all 3.0.2+dfsg-2 [1023 kB] Get: 153 http://deb.debian.org/debian unstable/main amd64 python3-flask-cors all 5.0.0-1 [46.3 kB] Get: 154 http://deb.debian.org/debian unstable/main amd64 python3-biomaj3-daemon all 3.0.24-3 [30.7 kB] Fetched 50.6 MB in 2s (24.5 MB/s) Preconfiguring packages ... Selecting previously unselected package fonts-lato. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19775 files and directories currently installed.) Preparing to unpack .../fonts-lato_2.015-1_all.deb ... Unpacking fonts-lato (2.015-1) ... Selecting previously unselected package libpython3.13-minimal:amd64. Preparing to unpack .../libpython3.13-minimal_3.13.2-1_amd64.deb ... Unpacking libpython3.13-minimal:amd64 (3.13.2-1) ... 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Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-6) ... Selecting previously unselected package libpython3.13-stdlib:amd64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.2-1_amd64.deb ... Unpacking libpython3.13-stdlib:amd64 (3.13.2-1) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.2-1_amd64.deb ... Unpacking python3.13 (3.13.2-1) ... Selecting previously unselected package libpython3-stdlib:amd64. 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Selecting previously unselected package python3-flask-cors. Preparing to unpack .../138-python3-flask-cors_5.0.0-1_all.deb ... Unpacking python3-flask-cors (5.0.0-1) ... Selecting previously unselected package python3-biomaj3-daemon. Preparing to unpack .../139-python3-biomaj3-daemon_3.0.24-3_all.deb ... Unpacking python3-biomaj3-daemon (3.0.24-3) ... Setting up media-types (11.0.0) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up libprotobuf32t64:amd64 (3.21.12-10+b4) ... Setting up libkeyutils1:amd64 (1.6.3-4) ... Setting up fonts-lato (2.015-1) ... Setting up libicu72:amd64 (72.1-6) ... Setting up bsdextrautils (2.40.4-4) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libyaml-0-2:amd64 (0.2.5-2) ... Setting up libtirpc-common (1.3.4+ds-1.3) ... Setting up unzip (6.0-28) ... Setting up libdebhelper-perl (13.24.1) ... Setting up libbrotli1:amd64 (1.1.0-2+b6) ... Setting up libmagic1t64:amd64 (1:5.45-3+b1) ... Setting up libpython3.12-minimal:amd64 (3.12.9-1) ... Setting up libnghttp2-14:amd64 (1.64.0-1) ... Setting up gettext-base (0.23.1-1) ... Setting up m4 (1.4.19-5) ... Setting up libcom-err2:amd64 (1.47.2-1) ... Setting up file (1:5.45-3+b1) ... Setting up libelf1t64:amd64 (0.192-4) ... Setting up libkrb5support0:amd64 (1.21.3-4) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-8+b1) ... Setting up tzdata (2025a-2) ... Current default time zone: 'Etc/UTC' Local time is now: Fri Mar 27 07:58:26 UTC 2026. Universal Time is now: Fri Mar 27 07:58:26 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... Setting up libunistring5:amd64 (1.3-1) ... Setting up autopoint (0.23.1-1) ... Setting up libk5crypto3:amd64 (1.21.3-4) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-8+b1) ... Setting up autoconf (2.72-3) ... Setting up libnghttp3-9:amd64 (1.6.0-2) ... Setting up libffi8:amd64 (3.4.7-1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:amd64 (0.0.8-1+b2) ... Setting up libtasn1-6:amd64 (4.20.0-2) ... Setting up netbase (6.4) ... Setting up libngtcp2-16:amd64 (1.9.1-1) ... Setting up libkrb5-3:amd64 (1.21.3-4) ... Setting up libssh2-1t64:amd64 (1.11.1-1) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up openssl (3.4.1-1) ... Setting up readline-common (8.2-6) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... Setting up sphinx-rtd-theme-common (3.0.2+dfsg-2) ... Setting up libldap2:amd64 (2.6.9+dfsg-1) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up automake (1:1.17-3) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up python3.12-minimal (3.12.9-1) ... Setting up gettext (0.23.1-1) ... Setting up libtool (2.5.4-3) ... Setting up libidn2-0:amd64 (2.3.7-2+b1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up ca-certificates (20241223) ... Updating certificates in /etc/ssl/certs... 152 added, 0 removed; done. Setting up libp11-kit0:amd64 (0.25.5-3) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-4) ... Setting up libjs-sphinxdoc (8.1.3-5) ... Setting up libreadline8t64:amd64 (8.2-6) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up groff-base (1.23.0-7) ... Setting up libpython3.13-stdlib:amd64 (3.13.2-1) ... Setting up libpython3-stdlib:amd64 (3.13.1-2) ... Setting up libgnutls30t64:amd64 (3.8.9-2) ... Setting up libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ... Setting up python3.13 (3.13.2-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpsl5t64:amd64 (0.21.2-1.1+b1) ... Setting up python3 (3.13.1-2) ... Setting up python3-zipp (3.21.0-1) ... Setting up python3-click (8.2.0-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up python3-markupsafe (2.1.5-1+b2) ... Setting up python3-simpleeval (1.0.3-1) ... Setting up python3-async-timeout (5.0.1-1) ... Setting up python3-bson (4.10.1-5) ... Setting up python3-decorator (5.1.1-5) ... Setting up python3-jinja2 (3.1.5-2) ... Setting up python3-packaging (24.2-1) ... Setting up python3-chardet (5.2.0+dfsg-2) ... Setting up python3-wcwidth (0.2.13+dfsg1-1) ... Setting up python3-humanfriendly (10.0-6) ... Setting up python3-certifi (2025.1.31+ds-1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up python3-werkzeug (3.1.3-2) ... Setting up python3-idna (3.10-1) ... Setting up python3-wrapt (1.15.0-4) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up python3-urllib3 (2.3.0-1) ... Setting up python3-dnspython (2.7.0-1) ... Setting up libnsl2:amd64 (1.3.0-3+b3) ... Setting up python3-pyasn1 (0.6.1-1) ... Setting up python3-dateutil (2.9.0-3) ... Setting up python3-msgpack (1.0.3-3+b3) ... Setting up python3-py-zipkin (1.2.8-2) ... Setting up python3-protobuf (3.21.12-10+b4) ... Setting up python3-pymongo (4.10.1-5) ... Setting up python3-prettytable (3.12.0-1) ... Setting up python3-deprecated (1.2.18-1) ... Setting up libngtcp2-crypto-gnutls8:amd64 (1.9.1-1) ... Setting up python3-yapsy (1.12.2-3) ... Setting up python3-blinker (1.9.0-1) ... Setting up python3-more-itertools (10.6.0-1) ... Setting up python3-elasticsearch (7.17.6-1) ... Setting up python3-ftputil (5.1.0-1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up libpython3.12-stdlib:amd64 (3.12.9-1) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up python3-defusedxml (0.7.1-3) ... Setting up python3-charset-normalizer (3.4.1-1) ... Setting up python3-pika (1.3.2-1) ... Setting up python3-tenacity (8.4.2+really8.4.1-2) ... Setting up python3-bcrypt (4.2.0-2.1) ... Setting up python3.12 (3.12.9-1) ... Setting up python3-typeguard (4.4.1-1) ... Setting up libcurl3t64-gnutls:amd64 (8.12.1-2) ... Setting up python3-tabulate (0.9.0-1) ... Setting up python3-itsdangerous (2.2.0-2) ... Setting up python3-all (3.13.1-2) ... Setting up python3-yaml (6.0.2-1+b1) ... Setting up debhelper (13.24.1) ... Setting up python3-pytz (2025.1-3) ... Setting up python3-ldap3 (2.9.1-2) ... Setting up python3-tz (2025.1-3) ... Setting up python3-inflect (7.3.1-2) ... Setting up python3-prometheus-client (0.21.1+ds1-1) ... Setting up python3-pycurl (7.45.4-1) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-requests (2.32.3+dfsg-4) ... Setting up python3-redis (4.3.4-4) ... Setting up python3-consul (1.5.1+dfsg-1) ... Setting up python3-irodsclient (3.0.0-1) ... /usr/lib/python3/dist-packages/irods/test/admin_test.py:379: SyntaxWarning: invalid escape sequence '\]' new_password = """abc123!"#$%&'()*+,-./:;<=>?@[\]^_`{|}~Z""" /usr/lib/python3/dist-packages/irods/test/admin_test.py:406: SyntaxWarning: invalid escape sequence '\]' new_comment = """comment-abc123!"#$%&'()*+,-./:;<=>?@[\]^_{|}~Z""" # omitting backtick due to #170 /usr/lib/python3/dist-packages/irods/test/admin_test.py:425: SyntaxWarning: invalid escape sequence '\]' new_info = """info-abc123!"#$%&'()*+,-./:;<=>?@[\]^_{|}~Z""" # omitting backtick due to #170 /usr/lib/python3/dist-packages/irods/test/data_obj_test.py:37: SyntaxWarning: invalid escape sequence '\.' localhost_with_optional_domain_pattern = re.compile("localhost(\.\S\S*)?$") /usr/lib/python3/dist-packages/irods/test/data_obj_test.py:420: SyntaxWarning: invalid escape sequence '\s' NumThreadsRegex = re.compile("^num_threads\s*=\s*(\d+)", re.MULTILINE) /usr/lib/python3/dist-packages/irods/test/data_obj_test.py:604: SyntaxWarning: invalid escape sequence '\s' "No\s+Checksum\s+Available.+\s+Replica\s\[(\d+)\]", re.IGNORECASE /usr/lib/python3/dist-packages/irods/test/data_obj_test.py:1049: SyntaxWarning: invalid escape sequence '\S' re.finditer("redirect_to_host = (\S+)", search_text), /usr/lib/python3/dist-packages/irods/test/data_obj_test.py:1050: SyntaxWarning: invalid escape sequence '\S' re.finditer("target_host = (\S+)", search_text), /usr/lib/python3/dist-packages/irods/test/rule_test.py:423: SyntaxWarning: invalid escape sequence '\[' self.assertRegexpMatches(lines[0], ".*\[Hello world!\]") /usr/lib/python3/dist-packages/irods/test/rule_test.py:445: SyntaxWarning: invalid escape sequence '\[' self.assertRegexpMatches(lines[0], "\[STRING\]\[\]") /usr/lib/python3/dist-packages/irods/test/rule_test.py:446: SyntaxWarning: invalid escape sequence '\[' self.assertRegexpMatches(lines[1], "\[STRING\]\[\]") /usr/lib/python3/dist-packages/irods/test/rule_test.py:455: SyntaxWarning: invalid escape sequence '\[' self.assertRegexpMatches(lines[0], "\[INTEGER\]\[5\]") /usr/lib/python3/dist-packages/irods/test/rule_test.py:456: SyntaxWarning: invalid escape sequence '\[' self.assertRegexpMatches(lines[1], "\[STRING\]\[A String\]") /usr/lib/python3/dist-packages/irods/test/admin_test.py:379: SyntaxWarning: invalid escape sequence '\]' new_password = """abc123!"#$%&'()*+,-./:;<=>?@[\]^_`{|}~Z""" /usr/lib/python3/dist-packages/irods/test/admin_test.py:406: SyntaxWarning: invalid escape sequence '\]' new_comment = """comment-abc123!"#$%&'()*+,-./:;<=>?@[\]^_{|}~Z""" # omitting backtick due to #170 /usr/lib/python3/dist-packages/irods/test/admin_test.py:425: SyntaxWarning: invalid escape sequence '\]' new_info = """info-abc123!"#$%&'()*+,-./:;<=>?@[\]^_{|}~Z""" # omitting backtick due to #170 /usr/lib/python3/dist-packages/irods/test/data_obj_test.py:37: SyntaxWarning: invalid escape sequence '\.' localhost_with_optional_domain_pattern = re.compile("localhost(\.\S\S*)?$") /usr/lib/python3/dist-packages/irods/test/data_obj_test.py:420: SyntaxWarning: invalid escape sequence '\s' NumThreadsRegex = re.compile("^num_threads\s*=\s*(\d+)", re.MULTILINE) /usr/lib/python3/dist-packages/irods/test/data_obj_test.py:604: SyntaxWarning: invalid escape sequence '\s' "No\s+Checksum\s+Available.+\s+Replica\s\[(\d+)\]", re.IGNORECASE /usr/lib/python3/dist-packages/irods/test/data_obj_test.py:1049: SyntaxWarning: invalid escape sequence '\S' re.finditer("redirect_to_host = (\S+)", search_text), /usr/lib/python3/dist-packages/irods/test/data_obj_test.py:1050: SyntaxWarning: invalid escape sequence '\S' re.finditer("target_host = (\S+)", search_text), /usr/lib/python3/dist-packages/irods/test/rule_test.py:423: SyntaxWarning: invalid escape sequence '\[' self.assertRegexpMatches(lines[0], ".*\[Hello world!\]") /usr/lib/python3/dist-packages/irods/test/rule_test.py:445: SyntaxWarning: invalid escape sequence '\[' self.assertRegexpMatches(lines[0], "\[STRING\]\[\]") /usr/lib/python3/dist-packages/irods/test/rule_test.py:446: SyntaxWarning: invalid escape sequence '\[' self.assertRegexpMatches(lines[1], "\[STRING\]\[\]") /usr/lib/python3/dist-packages/irods/test/rule_test.py:455: SyntaxWarning: invalid escape sequence '\[' self.assertRegexpMatches(lines[0], "\[INTEGER\]\[5\]") /usr/lib/python3/dist-packages/irods/test/rule_test.py:456: SyntaxWarning: invalid escape sequence '\[' self.assertRegexpMatches(lines[1], "\[STRING\]\[A String\]") Setting up python3-pkg-resources (75.8.0-1) ... Setting up python3-setuptools (75.8.0-1) ... Setting up python3-biomaj3-zipkin (0.2.2-3) ... Setting up python3-influxdb (5.3.2-5) ... Setting up python3-flask (3.1.0-2) ... Setting up python3-flask-cors (5.0.0-1) ... Setting up python3-biomaj3-core (3.0.28-4) ... Setting up python3-biomaj3-cli (3.1.11-5) ... Setting up python3-biomaj3-download (3.2.12-2) ... Setting up dh-python (6.20250108) ... Setting up python3-biomaj3-user (3.0.12-2) ... Setting up python3-biomaj3-process (3.0.19-3) ... Setting up python3-biomaj3 (3.1.24-2) ... Setting up python3-biomaj3-daemon (3.0.24-3) ... Processing triggers for libc-bin (2.40-7) ... Processing triggers for ca-certificates (20241223) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/biomaj3-cli-3.1.11/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../biomaj3-cli_3.1.11-5_source.changes dpkg-buildpackage: info: source package biomaj3-cli dpkg-buildpackage: info: source version 3.1.11-5 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Alexandre Detiste dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --with python3 --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:311: python3.12 setup.py clean /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:270: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:270: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) running clean removing '/build/reproducible-path/biomaj3-cli-3.1.11/.pybuild/cpython3_3.12_biomaj-cli/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.12' does not exist -- can't clean it I: pybuild base:311: python3.13 setup.py clean /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:270: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:270: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) running clean removing '/build/reproducible-path/biomaj3-cli-3.1.11/.pybuild/cpython3_3.13_biomaj-cli/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.13' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.12 setup.py config /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:270: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:270: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) running config I: pybuild base:311: python3.13 setup.py config /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:270: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:270: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3.12 setup.py build /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:270: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:270: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) running build running build_py creating /build/reproducible-path/biomaj3-cli-3.1.11/.pybuild/cpython3_3.12_biomaj-cli/build/biomaj_cli copying biomaj_cli/utils.py -> /build/reproducible-path/biomaj3-cli-3.1.11/.pybuild/cpython3_3.12_biomaj-cli/build/biomaj_cli copying biomaj_cli/__init__.py -> /build/reproducible-path/biomaj3-cli-3.1.11/.pybuild/cpython3_3.12_biomaj-cli/build/biomaj_cli running egg_info creating biomaj_cli.egg-info writing biomaj_cli.egg-info/PKG-INFO writing dependency_links to biomaj_cli.egg-info/dependency_links.txt writing requirements to biomaj_cli.egg-info/requires.txt writing top-level names to biomaj_cli.egg-info/top_level.txt writing manifest file 'biomaj_cli.egg-info/SOURCES.txt' reading manifest file 'biomaj_cli.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'biomaj_cli.egg-info/SOURCES.txt' running build_scripts creating build/scripts-3.12 copying and adjusting bin/biomaj-cli.py -> build/scripts-3.12 changing mode of build/scripts-3.12/biomaj-cli.py from 644 to 755 I: pybuild base:311: /usr/bin/python3 setup.py build /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:270: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:270: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) running build running build_py creating /build/reproducible-path/biomaj3-cli-3.1.11/.pybuild/cpython3_3.13_biomaj-cli/build/biomaj_cli copying biomaj_cli/utils.py -> /build/reproducible-path/biomaj3-cli-3.1.11/.pybuild/cpython3_3.13_biomaj-cli/build/biomaj_cli copying biomaj_cli/__init__.py -> /build/reproducible-path/biomaj3-cli-3.1.11/.pybuild/cpython3_3.13_biomaj-cli/build/biomaj_cli running egg_info writing biomaj_cli.egg-info/PKG-INFO writing dependency_links to biomaj_cli.egg-info/dependency_links.txt writing requirements to biomaj_cli.egg-info/requires.txt writing top-level names to biomaj_cli.egg-info/top_level.txt reading manifest file 'biomaj_cli.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'biomaj_cli.egg-info/SOURCES.txt' running build_scripts creating build/scripts-3.13 copying and adjusting bin/biomaj-cli.py -> build/scripts-3.13 changing mode of build/scripts-3.13/biomaj-cli.py from 644 to 755 create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/python3-biomaj3-cli/ -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3.12 setup.py install --root /build/reproducible-path/biomaj3-cli-3.1.11/debian/python3-biomaj3-cli /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:270: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:270: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:79: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running egg_info writing biomaj_cli.egg-info/PKG-INFO writing dependency_links to biomaj_cli.egg-info/dependency_links.txt writing requirements to biomaj_cli.egg-info/requires.txt writing top-level names to biomaj_cli.egg-info/top_level.txt reading manifest file 'biomaj_cli.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'biomaj_cli.egg-info/SOURCES.txt' running build_scripts running install_lib creating /build/reproducible-path/biomaj3-cli-3.1.11/debian/python3-biomaj3-cli/usr/lib/python3.12/dist-packages creating /build/reproducible-path/biomaj3-cli-3.1.11/debian/python3-biomaj3-cli/usr/lib/python3.12/dist-packages/biomaj_cli copying /build/reproducible-path/biomaj3-cli-3.1.11/.pybuild/cpython3_3.12_biomaj-cli/build/biomaj_cli/utils.py -> /build/reproducible-path/biomaj3-cli-3.1.11/debian/python3-biomaj3-cli/usr/lib/python3.12/dist-packages/biomaj_cli copying /build/reproducible-path/biomaj3-cli-3.1.11/.pybuild/cpython3_3.12_biomaj-cli/build/biomaj_cli/__init__.py -> /build/reproducible-path/biomaj3-cli-3.1.11/debian/python3-biomaj3-cli/usr/lib/python3.12/dist-packages/biomaj_cli byte-compiling /build/reproducible-path/biomaj3-cli-3.1.11/debian/python3-biomaj3-cli/usr/lib/python3.12/dist-packages/biomaj_cli/utils.py to utils.cpython-312.pyc byte-compiling /build/reproducible-path/biomaj3-cli-3.1.11/debian/python3-biomaj3-cli/usr/lib/python3.12/dist-packages/biomaj_cli/__init__.py to __init__.cpython-312.pyc running install_egg_info Copying biomaj_cli.egg-info to /build/reproducible-path/biomaj3-cli-3.1.11/debian/python3-biomaj3-cli/usr/lib/python3.12/dist-packages/biomaj_cli-3.1.11.egg-info Skipping SOURCES.txt running install_scripts creating /build/reproducible-path/biomaj3-cli-3.1.11/debian/python3-biomaj3-cli/usr/bin copying build/scripts-3.12/biomaj-cli.py -> /build/reproducible-path/biomaj3-cli-3.1.11/debian/python3-biomaj3-cli/usr/bin changing mode of /build/reproducible-path/biomaj3-cli-3.1.11/debian/python3-biomaj3-cli/usr/bin/biomaj-cli.py to 755 I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/biomaj3-cli-3.1.11/debian/python3-biomaj3-cli /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:270: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:270: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:79: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running egg_info writing biomaj_cli.egg-info/PKG-INFO writing dependency_links to biomaj_cli.egg-info/dependency_links.txt writing requirements to biomaj_cli.egg-info/requires.txt writing top-level names to biomaj_cli.egg-info/top_level.txt reading manifest file 'biomaj_cli.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'biomaj_cli.egg-info/SOURCES.txt' running build_scripts running install_lib creating /build/reproducible-path/biomaj3-cli-3.1.11/debian/python3-biomaj3-cli/usr/lib/python3.13/dist-packages creating /build/reproducible-path/biomaj3-cli-3.1.11/debian/python3-biomaj3-cli/usr/lib/python3.13/dist-packages/biomaj_cli copying /build/reproducible-path/biomaj3-cli-3.1.11/.pybuild/cpython3_3.13_biomaj-cli/build/biomaj_cli/utils.py -> /build/reproducible-path/biomaj3-cli-3.1.11/debian/python3-biomaj3-cli/usr/lib/python3.13/dist-packages/biomaj_cli copying /build/reproducible-path/biomaj3-cli-3.1.11/.pybuild/cpython3_3.13_biomaj-cli/build/biomaj_cli/__init__.py -> /build/reproducible-path/biomaj3-cli-3.1.11/debian/python3-biomaj3-cli/usr/lib/python3.13/dist-packages/biomaj_cli byte-compiling /build/reproducible-path/biomaj3-cli-3.1.11/debian/python3-biomaj3-cli/usr/lib/python3.13/dist-packages/biomaj_cli/utils.py to utils.cpython-313.pyc byte-compiling /build/reproducible-path/biomaj3-cli-3.1.11/debian/python3-biomaj3-cli/usr/lib/python3.13/dist-packages/biomaj_cli/__init__.py to __init__.cpython-313.pyc running install_egg_info Copying biomaj_cli.egg-info to /build/reproducible-path/biomaj3-cli-3.1.11/debian/python3-biomaj3-cli/usr/lib/python3.13/dist-packages/biomaj_cli-3.1.11.egg-info Skipping SOURCES.txt running install_scripts copying build/scripts-3.13/biomaj-cli.py -> /build/reproducible-path/biomaj3-cli-3.1.11/debian/python3-biomaj3-cli/usr/bin changing mode of /build/reproducible-path/biomaj3-cli-3.1.11/debian/python3-biomaj3-cli/usr/bin/biomaj-cli.py to 755 debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/biomaj3-cli-3.1.11' dh_install sed -i '1s;^;#!/usr/bin/python3\n;' debian/python3-biomaj3-cli/usr/bin/biomaj-cli.py make[1]: Leaving directory '/build/reproducible-path/biomaj3-cli-3.1.11' dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: Recommends field of package python3-biomaj3-cli: substitution variable ${python3:Recommends} used, but is not defined dpkg-gencontrol: warning: Suggests field of package python3-biomaj3-cli: substitution variable ${python3:Suggests} used, but is not defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-biomaj3-cli' in '../python3-biomaj3-cli_3.1.11-5_all.deb'. dpkg-genbuildinfo --build=binary -O../biomaj3-cli_3.1.11-5_amd64.buildinfo dpkg-genchanges --build=binary -O../biomaj3-cli_3.1.11-5_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2608634 and its subdirectories I: Current time: Thu Mar 26 19:58:59 -12 2026 I: pbuilder-time-stamp: 1774598339 Fri Mar 27 07:58:59 UTC 2026 I: Signing ./b1/biomaj3-cli_3.1.11-5_amd64.buildinfo as biomaj3-cli_3.1.11-5_amd64.buildinfo.asc Fri Mar 27 07:58:59 UTC 2026 I: Signed ./b1/biomaj3-cli_3.1.11-5_amd64.buildinfo as ./b1/biomaj3-cli_3.1.11-5_amd64.buildinfo.asc Fri Mar 27 07:58:59 UTC 2026 - build #1 for biomaj3-cli/unstable/amd64 on ionos15-amd64 done. Starting cleanup. All cleanup done. Fri Mar 27 07:58:59 UTC 2026 - reproducible_build.sh stopped running as /tmp/jenkins-script-RA0hITNn, removing. /srv/reproducible-results/rbuild-debian/r-b-build.GJYO9PGR: total 16 drwxr-xr-x 2 jenkins jenkins 4096 Feb 22 01:36 b1 drwxr-xr-x 2 jenkins jenkins 4096 Feb 22 01:34 b2 -rw-r--r-- 1 jenkins jenkins 2140 Jul 6 2024 biomaj3-cli_3.1.11-5.dsc -rw------- 1 jenkins jenkins 3274 Feb 22 01:34 rbuildlog.iHjU0p0 /srv/reproducible-results/rbuild-debian/r-b-build.GJYO9PGR/b1: total 152 -rw-r--r-- 1 jenkins jenkins 13308 Feb 22 01:36 biomaj3-cli_3.1.11-5.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2140 Feb 22 01:36 biomaj3-cli_3.1.11-5.dsc -rw-r--r-- 1 jenkins jenkins 8737 Feb 22 01:36 biomaj3-cli_3.1.11-5_amd64.buildinfo -rw-r--r-- 1 jenkins jenkins 9619 Feb 22 01:36 biomaj3-cli_3.1.11-5_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1110 Feb 22 01:36 biomaj3-cli_3.1.11-5_amd64.changes -rw-r--r-- 1 jenkins jenkins 1277 Feb 22 01:36 biomaj3-cli_3.1.11-5_source.changes -rw-r--r-- 1 jenkins jenkins 79005 Feb 22 01:36 build.log -rw-r--r-- 1 jenkins jenkins 18940 Feb 22 01:36 python3-biomaj3-cli_3.1.11-5_all.deb /srv/reproducible-results/rbuild-debian/r-b-build.GJYO9PGR/b2: total 0 Sat Feb 22 01:36:00 UTC 2025 I: Deleting $TMPDIR on ionos15-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Mar 26 19:57:42 -12 2026 I: pbuilder-time-stamp: 1774598262 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [biomaj3-cli_3.1.11-5.dsc] I: copying [./biomaj3-cli_3.1.11.orig.tar.xz] I: copying [./biomaj3-cli_3.1.11-5.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./biomaj3-cli_3.1.11-5.dsc: unsupported subcommand dpkg-source: info: extracting biomaj3-cli in biomaj3-cli-3.1.11 dpkg-source: info: unpacking biomaj3-cli_3.1.11.orig.tar.xz dpkg-source: info: unpacking biomaj3-cli_3.1.11-5.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2608634/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='1c454e1c8f354e13825b4ab7e7235bd3' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2608634' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.GJYO9PGR/pbuilderrc_ouSi --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.GJYO9PGR/b1 --logfile b1/build.log biomaj3-cli_3.1.11-5.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos15-amd64 6.12.9+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.9-1~bpo12+1 (2025-01-19) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2608634/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, python3-all, python3-requests, python3-setuptools, python3-biomaj3-core, python3-biomaj3-daemon dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19775 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-requests; however: Package python3-requests is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-biomaj3-core; however: Package python3-biomaj3-core is not installed. pbuilder-satisfydepends-dummy depends on python3-biomaj3-daemon; however: Package python3-biomaj3-daemon is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fonts-font-awesome{a} fonts-lato{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbrotli1{a} libcom-err2{a} libcurl3t64-gnutls{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgnutls30t64{a} libgssapi-krb5-2{a} libicu72{a} libidn2-0{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap2{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libnsl2{a} libp11-kit0{a} libpipeline1{a} libprotobuf32t64{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libtasn1-6{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} libyaml-0-2{a} m4{a} man-db{a} media-types{a} netbase{a} openssl{a} po-debconf{a} python3{a} python3-all{a} python3-async-timeout{a} python3-autocommand{a} python3-bcrypt{a} python3-biomaj3{a} python3-biomaj3-cli{a} python3-biomaj3-core{a} python3-biomaj3-daemon{a} python3-biomaj3-download{a} python3-biomaj3-process{a} python3-biomaj3-user{a} python3-biomaj3-zipkin{a} python3-blinker{a} python3-bson{a} python3-certifi{a} python3-chardet{a} python3-charset-normalizer{a} python3-click{a} python3-consul{a} python3-dateutil{a} python3-decorator{a} python3-defusedxml{a} python3-deprecated{a} python3-dnspython{a} python3-elasticsearch{a} python3-flask{a} python3-flask-cors{a} python3-ftputil{a} python3-humanfriendly{a} python3-idna{a} python3-inflect{a} python3-influxdb{a} python3-irodsclient{a} python3-itsdangerous{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-jinja2{a} python3-ldap3{a} python3-markupsafe{a} python3-minimal{a} python3-more-itertools{a} python3-msgpack{a} python3-packaging{a} python3-pika{a} python3-pkg-resources{a} python3-prettytable{a} python3-prometheus-client{a} python3-protobuf{a} python3-py-zipkin{a} python3-pyasn1{a} python3-pycurl{a} python3-pymongo{a} python3-pytz{a} python3-redis{a} python3-requests{a} python3-setuptools{a} python3-simpleeval{a} python3-tabulate{a} python3-tenacity{a} python3-typeguard{a} python3-typing-extensions{a} python3-tz{a} python3-urllib3{a} python3-wcwidth{a} python3-werkzeug{a} python3-wrapt{a} python3-yaml{a} python3-yapsy{a} python3-zipp{a} python3.12{a} python3.12-minimal{a} python3.13{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} sphinx-rtd-theme-common{a} tzdata{a} unzip{a} The following packages are RECOMMENDED but will NOT be installed: curl javascript-common krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx publicsuffix python3-asgiref python3-babel python3-bson-ext python3-cryptography python3-dotenv python3-gridfs python3-h2 python3-httpcore python3-httpx python3-openssl python3-pyinotify python3-pymongo-ext wget 0 packages upgraded, 154 newly installed, 0 to remove and 0 not upgraded. Need to get 50.6 MB of archives. After unpacking 197 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 fonts-lato all 2.015-1 [2780 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 libpython3.13-minimal amd64 3.13.2-1 [859 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.6.4-1 [106 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 python3.13-minimal amd64 3.13.2-1 [2205 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 python3-minimal amd64 3.13.1-2 [27.0 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 media-types all 11.0.0 [27.6 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 netbase all 6.4 [12.8 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 tzdata all 2025a-2 [259 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 libffi8 amd64 3.4.7-1 [23.9 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 readline-common all 8.2-6 [69.4 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 libreadline8t64 amd64 8.2-6 [169 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 libpython3.13-stdlib amd64 3.13.2-1 [1979 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 python3.13 amd64 3.13.2-1 [745 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 libpython3-stdlib amd64 3.13.1-2 [9952 B] Get: 15 http://deb.debian.org/debian unstable/main amd64 python3 amd64 3.13.1-2 [28.0 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 libpython3.12-minimal amd64 3.12.9-1 [817 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 python3.12-minimal amd64 3.12.9-1 [2163 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 openssl amd64 3.4.1-1 [1427 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 ca-certificates all 20241223 [164 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.1-1 [243 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-7 [1185 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40.4-4 [92.4 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-5 [294 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3 [493 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.17-3 [862 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.1-1 [770 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.24.1 [90.9 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-3 [539 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 41 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 42 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 libunistring5 amd64 1.3-1 [476 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 libicu72 amd64 72.1-6 [9421 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB] Get: 46 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.1-1 [1680 kB] Get: 47 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 48 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 49 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.24.1 [920 kB] Get: 50 http://deb.debian.org/debian unstable/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 python3-more-itertools all 10.6.0-1 [65.3 kB] Get: 52 http://deb.debian.org/debian unstable/main amd64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 53 http://deb.debian.org/debian unstable/main amd64 python3-typeguard all 4.4.1-1 [37.0 kB] Get: 54 http://deb.debian.org/debian unstable/main amd64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 55 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 56 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 57 http://deb.debian.org/debian unstable/main amd64 python3-pkg-resources all 75.8.0-1 [222 kB] Get: 58 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 59 http://deb.debian.org/debian unstable/main amd64 python3-zipp all 3.21.0-1 [10.6 kB] Get: 60 http://deb.debian.org/debian unstable/main amd64 python3-setuptools all 75.8.0-1 [724 kB] Get: 61 http://deb.debian.org/debian unstable/main amd64 dh-python all 6.20250108 [113 kB] Get: 62 http://deb.debian.org/debian unstable/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [517 kB] Get: 63 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b6 [302 kB] Get: 64 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.2-1 [24.0 kB] Get: 65 http://deb.debian.org/debian unstable/main amd64 libidn2-0 amd64 2.3.7-2+b1 [129 kB] Get: 66 http://deb.debian.org/debian unstable/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB] Get: 67 http://deb.debian.org/debian unstable/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get: 68 http://deb.debian.org/debian unstable/main amd64 libgnutls30t64 amd64 3.8.9-2 [1464 kB] Get: 69 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.21.3-4 [32.8 kB] Get: 70 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.21.3-4 [80.9 kB] Get: 71 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get: 72 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.21.3-4 [326 kB] Get: 73 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.21.3-4 [138 kB] Get: 74 http://deb.debian.org/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-8+b1 [19.9 kB] Get: 75 http://deb.debian.org/debian unstable/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-8+b1 [57.6 kB] Get: 76 http://deb.debian.org/debian unstable/main amd64 libldap2 amd64 2.6.9+dfsg-1 [192 kB] Get: 77 http://deb.debian.org/debian unstable/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB] Get: 78 http://deb.debian.org/debian unstable/main amd64 libnghttp3-9 amd64 1.6.0-2 [64.8 kB] Get: 79 http://deb.debian.org/debian unstable/main amd64 libngtcp2-16 amd64 1.9.1-1 [119 kB] Get: 80 http://deb.debian.org/debian unstable/main amd64 libngtcp2-crypto-gnutls8 amd64 1.9.1-1 [18.5 kB] Get: 81 http://deb.debian.org/debian unstable/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 82 http://deb.debian.org/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get: 83 http://deb.debian.org/debian unstable/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 84 http://deb.debian.org/debian unstable/main amd64 libcurl3t64-gnutls amd64 8.12.1-2 [365 kB] Get: 85 http://deb.debian.org/debian unstable/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 86 http://deb.debian.org/debian unstable/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 87 http://deb.debian.org/debian unstable/main amd64 libjs-sphinxdoc all 8.1.3-5 [30.5 kB] Get: 88 http://deb.debian.org/debian unstable/main amd64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 89 http://deb.debian.org/debian unstable/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.3+b1 [83.1 kB] Get: 90 http://deb.debian.org/debian unstable/main amd64 libnsl2 amd64 1.3.0-3+b3 [40.6 kB] Get: 91 http://deb.debian.org/debian unstable/main amd64 libprotobuf32t64 amd64 3.21.12-10+b4 [982 kB] Get: 92 http://deb.debian.org/debian unstable/main amd64 libpython3.12-stdlib amd64 3.12.9-1 [1974 kB] Get: 93 http://deb.debian.org/debian unstable/main amd64 libyaml-0-2 amd64 0.2.5-2 [52.5 kB] Get: 94 http://deb.debian.org/debian unstable/main amd64 python3.12 amd64 3.12.9-1 [681 kB] Get: 95 http://deb.debian.org/debian unstable/main amd64 python3-all amd64 3.13.1-2 [1056 B] Get: 96 http://deb.debian.org/debian unstable/main amd64 python3-async-timeout all 5.0.1-1 [8324 B] Get: 97 http://deb.debian.org/debian unstable/main amd64 python3-bcrypt amd64 4.2.0-2.1 [236 kB] Get: 98 http://deb.debian.org/debian unstable/main amd64 python3-certifi all 2025.1.31+ds-1 [9652 B] Get: 99 http://deb.debian.org/debian unstable/main amd64 python3-urllib3 all 2.3.0-1 [114 kB] Get: 100 http://deb.debian.org/debian unstable/main amd64 python3-elasticsearch all 7.17.6-1 [113 kB] Get: 101 http://deb.debian.org/debian unstable/main amd64 python3-charset-normalizer amd64 3.4.1-1 [142 kB] Get: 102 http://deb.debian.org/debian unstable/main amd64 python3-idna all 3.10-1 [42.0 kB] Get: 103 http://deb.debian.org/debian unstable/main amd64 python3-chardet all 5.2.0+dfsg-2 [108 kB] Get: 104 http://deb.debian.org/debian unstable/main amd64 python3-requests all 2.32.3+dfsg-4 [72.1 kB] Get: 105 http://deb.debian.org/debian unstable/main amd64 python3-biomaj3-core all 3.0.28-4 [25.1 kB] Get: 106 http://deb.debian.org/debian unstable/main amd64 python3-biomaj3-cli all 3.1.11-5 [18.9 kB] Get: 107 http://deb.debian.org/debian unstable/main amd64 python3-py-zipkin all 1.2.8-2 [36.4 kB] Get: 108 http://deb.debian.org/debian unstable/main amd64 python3-biomaj3-zipkin all 0.2.2-3 [15.1 kB] Get: 109 http://deb.debian.org/debian unstable/main amd64 python3-blinker all 1.9.0-1 [12.6 kB] Get: 110 http://deb.debian.org/debian unstable/main amd64 python3-click all 8.2.0-1 [98.7 kB] Get: 111 http://deb.debian.org/debian unstable/main amd64 python3-itsdangerous all 2.2.0-2 [18.1 kB] Get: 112 http://deb.debian.org/debian unstable/main amd64 python3-markupsafe amd64 2.1.5-1+b2 [13.9 kB] Get: 113 http://deb.debian.org/debian unstable/main amd64 python3-jinja2 all 3.1.5-2 [107 kB] Get: 114 http://deb.debian.org/debian unstable/main amd64 python3-werkzeug all 3.1.3-2 [207 kB] Get: 115 http://deb.debian.org/debian unstable/main amd64 python3-flask all 3.1.0-2 [106 kB] Get: 116 http://deb.debian.org/debian unstable/main amd64 python3-ftputil all 5.1.0-1 [40.4 kB] Get: 117 http://deb.debian.org/debian unstable/main amd64 python3-humanfriendly all 10.0-6 [85.6 kB] Get: 118 http://deb.debian.org/debian unstable/main amd64 python3-defusedxml all 0.7.1-3 [43.4 kB] Get: 119 http://deb.debian.org/debian unstable/main amd64 python3-wcwidth all 0.2.13+dfsg1-1 [24.9 kB] Get: 120 http://deb.debian.org/debian unstable/main amd64 python3-prettytable all 3.12.0-1 [39.5 kB] Get: 121 http://deb.debian.org/debian unstable/main amd64 python3-irodsclient all 3.0.0-1 [213 kB] Get: 122 http://deb.debian.org/debian unstable/main amd64 python3-pika all 1.3.2-1 [125 kB] Get: 123 http://deb.debian.org/debian unstable/main amd64 python3-decorator all 5.1.1-5 [15.1 kB] Get: 124 http://deb.debian.org/debian unstable/main amd64 python3-prometheus-client all 0.21.1+ds1-1 [44.9 kB] Get: 125 http://deb.debian.org/debian unstable/main amd64 python3-protobuf amd64 3.21.12-10+b4 [272 kB] Get: 126 http://deb.debian.org/debian unstable/main amd64 python3-pycurl amd64 7.45.4-1 [77.7 kB] Get: 127 http://deb.debian.org/debian unstable/main amd64 python3-wrapt amd64 1.15.0-4 [43.5 kB] Get: 128 http://deb.debian.org/debian unstable/main amd64 python3-deprecated all 1.2.18-1 [14.8 kB] Get: 129 http://deb.debian.org/debian unstable/main amd64 python3-packaging all 24.2-1 [55.3 kB] Get: 130 http://deb.debian.org/debian unstable/main amd64 python3-redis all 4.3.4-4 [185 kB] Get: 131 http://deb.debian.org/debian unstable/main amd64 python3-simpleeval all 1.0.3-1 [24.0 kB] Get: 132 http://deb.debian.org/debian unstable/main amd64 python3-tenacity all 8.4.2+really8.4.1-2 [46.0 kB] Get: 133 http://deb.debian.org/debian unstable/main amd64 python3-yaml amd64 6.0.2-1+b1 [178 kB] Get: 134 http://deb.debian.org/debian unstable/main amd64 python3-biomaj3-download all 3.2.12-2 [49.4 kB] Get: 135 http://deb.debian.org/debian unstable/main amd64 python3-biomaj3-process all 3.0.19-3 [25.3 kB] Get: 136 http://deb.debian.org/debian unstable/main amd64 python3-consul all 1.5.1+dfsg-1 [22.7 kB] Get: 137 http://deb.debian.org/debian unstable/main amd64 python3-pyasn1 all 0.6.1-1 [68.9 kB] Get: 138 http://deb.debian.org/debian unstable/main amd64 python3-ldap3 all 2.9.1-2 [235 kB] Get: 139 http://deb.debian.org/debian unstable/main amd64 python3-tabulate all 0.9.0-1 [45.9 kB] Get: 140 http://deb.debian.org/debian unstable/main amd64 python3-biomaj3-user all 3.0.12-2 [19.7 kB] Get: 141 http://deb.debian.org/debian unstable/main amd64 python3-dateutil all 2.9.0-3 [79.3 kB] Get: 142 http://deb.debian.org/debian unstable/main amd64 python3-msgpack amd64 1.0.3-3+b3 [112 kB] Get: 143 http://deb.debian.org/debian unstable/main amd64 python3-pytz all 2025.1-3 [150 kB] Get: 144 http://deb.debian.org/debian unstable/main amd64 python3-tz all 2025.1-3 [4004 B] Get: 145 http://deb.debian.org/debian unstable/main amd64 python3-influxdb all 5.3.2-5 [53.5 kB] Get: 146 http://deb.debian.org/debian unstable/main amd64 python3-bson all 4.10.1-5 [87.1 kB] Get: 147 http://deb.debian.org/debian unstable/main amd64 python3-dnspython all 2.7.0-1 [164 kB] Get: 148 http://deb.debian.org/debian unstable/main amd64 python3-pymongo all 4.10.1-5 [272 kB] Get: 149 http://deb.debian.org/debian unstable/main amd64 python3-yapsy all 1.12.2-3 [30.4 kB] Get: 150 http://deb.debian.org/debian unstable/main amd64 unzip amd64 6.0-28 [166 kB] Get: 151 http://deb.debian.org/debian unstable/main amd64 python3-biomaj3 all 3.1.24-2 [65.2 kB] Get: 152 http://deb.debian.org/debian unstable/main amd64 sphinx-rtd-theme-common all 3.0.2+dfsg-2 [1023 kB] Get: 153 http://deb.debian.org/debian unstable/main amd64 python3-flask-cors all 5.0.0-1 [46.3 kB] Get: 154 http://deb.debian.org/debian unstable/main amd64 python3-biomaj3-daemon all 3.0.24-3 [30.7 kB] Fetched 50.6 MB in 2s (24.5 MB/s) Preconfiguring packages ... Selecting previously unselected package fonts-lato. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19775 files and directories currently installed.) Preparing to unpack .../fonts-lato_2.015-1_all.deb ... Unpacking fonts-lato (2.015-1) ... Selecting previously unselected package libpython3.13-minimal:amd64. Preparing to unpack .../libpython3.13-minimal_3.13.2-1_amd64.deb ... Unpacking libpython3.13-minimal:amd64 (3.13.2-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.6.4-1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.4-1) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../python3.13-minimal_3.13.2-1_amd64.deb ... Unpacking python3.13-minimal (3.13.2-1) ... Setting up libpython3.13-minimal:amd64 (3.13.2-1) ... Setting up libexpat1:amd64 (2.6.4-1) ... Setting up python3.13-minimal (3.13.2-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20135 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.13.1-2_amd64.deb ... Unpacking python3-minimal (3.13.1-2) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_11.0.0_all.deb ... Unpacking media-types (11.0.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... 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Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-6) ... Selecting previously unselected package libpython3.13-stdlib:amd64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.2-1_amd64.deb ... Unpacking libpython3.13-stdlib:amd64 (3.13.2-1) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.2-1_amd64.deb ... Unpacking python3.13 (3.13.2-1) ... Selecting previously unselected package libpython3-stdlib:amd64. 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Setting up libpython3.12-minimal:amd64 (3.12.9-1) ... Setting up libnghttp2-14:amd64 (1.64.0-1) ... Setting up gettext-base (0.23.1-1) ... Setting up m4 (1.4.19-5) ... Setting up libcom-err2:amd64 (1.47.2-1) ... Setting up file (1:5.45-3+b1) ... Setting up libelf1t64:amd64 (0.192-4) ... Setting up libkrb5support0:amd64 (1.21.3-4) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-8+b1) ... Setting up tzdata (2025a-2) ... Current default time zone: 'Etc/UTC' Local time is now: Fri Mar 27 07:58:26 UTC 2026. Universal Time is now: Fri Mar 27 07:58:26 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... Setting up libunistring5:amd64 (1.3-1) ... Setting up autopoint (0.23.1-1) ... Setting up libk5crypto3:amd64 (1.21.3-4) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-8+b1) ... Setting up autoconf (2.72-3) ... Setting up libnghttp3-9:amd64 (1.6.0-2) ... Setting up libffi8:amd64 (3.4.7-1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:amd64 (0.0.8-1+b2) ... Setting up libtasn1-6:amd64 (4.20.0-2) ... Setting up netbase (6.4) ... Setting up libngtcp2-16:amd64 (1.9.1-1) ... Setting up libkrb5-3:amd64 (1.21.3-4) ... Setting up libssh2-1t64:amd64 (1.11.1-1) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up openssl (3.4.1-1) ... Setting up readline-common (8.2-6) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... Setting up sphinx-rtd-theme-common (3.0.2+dfsg-2) ... Setting up libldap2:amd64 (2.6.9+dfsg-1) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up automake (1:1.17-3) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up python3.12-minimal (3.12.9-1) ... Setting up gettext (0.23.1-1) ... Setting up libtool (2.5.4-3) ... Setting up libidn2-0:amd64 (2.3.7-2+b1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up ca-certificates (20241223) ... Updating certificates in /etc/ssl/certs... 152 added, 0 removed; done. Setting up libp11-kit0:amd64 (0.25.5-3) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-4) ... Setting up libjs-sphinxdoc (8.1.3-5) ... Setting up libreadline8t64:amd64 (8.2-6) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up groff-base (1.23.0-7) ... Setting up libpython3.13-stdlib:amd64 (3.13.2-1) ... Setting up libpython3-stdlib:amd64 (3.13.1-2) ... Setting up libgnutls30t64:amd64 (3.8.9-2) ... Setting up libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ... Setting up python3.13 (3.13.2-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpsl5t64:amd64 (0.21.2-1.1+b1) ... Setting up python3 (3.13.1-2) ... Setting up python3-zipp (3.21.0-1) ... Setting up python3-click (8.2.0-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up python3-markupsafe (2.1.5-1+b2) ... Setting up python3-simpleeval (1.0.3-1) ... Setting up python3-async-timeout (5.0.1-1) ... Setting up python3-bson (4.10.1-5) ... Setting up python3-decorator (5.1.1-5) ... Setting up python3-jinja2 (3.1.5-2) ... Setting up python3-packaging (24.2-1) ... Setting up python3-chardet (5.2.0+dfsg-2) ... Setting up python3-wcwidth (0.2.13+dfsg1-1) ... Setting up python3-humanfriendly (10.0-6) ... Setting up python3-certifi (2025.1.31+ds-1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up python3-werkzeug (3.1.3-2) ... Setting up python3-idna (3.10-1) ... Setting up python3-wrapt (1.15.0-4) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up python3-urllib3 (2.3.0-1) ... Setting up python3-dnspython (2.7.0-1) ... Setting up libnsl2:amd64 (1.3.0-3+b3) ... Setting up python3-pyasn1 (0.6.1-1) ... Setting up python3-dateutil (2.9.0-3) ... Setting up python3-msgpack (1.0.3-3+b3) ... Setting up python3-py-zipkin (1.2.8-2) ... Setting up python3-protobuf (3.21.12-10+b4) ... Setting up python3-pymongo (4.10.1-5) ... Setting up python3-prettytable (3.12.0-1) ... Setting up python3-deprecated (1.2.18-1) ... Setting up libngtcp2-crypto-gnutls8:amd64 (1.9.1-1) ... Setting up python3-yapsy (1.12.2-3) ... Setting up python3-blinker (1.9.0-1) ... Setting up python3-more-itertools (10.6.0-1) ... Setting up python3-elasticsearch (7.17.6-1) ... Setting up python3-ftputil (5.1.0-1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up libpython3.12-stdlib:amd64 (3.12.9-1) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up python3-defusedxml (0.7.1-3) ... Setting up python3-charset-normalizer (3.4.1-1) ... Setting up python3-pika (1.3.2-1) ... Setting up python3-tenacity (8.4.2+really8.4.1-2) ... Setting up python3-bcrypt (4.2.0-2.1) ... Setting up python3.12 (3.12.9-1) ... Setting up python3-typeguard (4.4.1-1) ... Setting up libcurl3t64-gnutls:amd64 (8.12.1-2) ... Setting up python3-tabulate (0.9.0-1) ... Setting up python3-itsdangerous (2.2.0-2) ... Setting up python3-all (3.13.1-2) ... Setting up python3-yaml (6.0.2-1+b1) ... Setting up debhelper (13.24.1) ... Setting up python3-pytz (2025.1-3) ... Setting up python3-ldap3 (2.9.1-2) ... Setting up python3-tz (2025.1-3) ... Setting up python3-inflect (7.3.1-2) ... Setting up python3-prometheus-client (0.21.1+ds1-1) ... Setting up python3-pycurl (7.45.4-1) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-requests (2.32.3+dfsg-4) ... Setting up python3-redis (4.3.4-4) ... Setting up python3-consul (1.5.1+dfsg-1) ... Setting up python3-irodsclient (3.0.0-1) ... /usr/lib/python3/dist-packages/irods/test/admin_test.py:379: SyntaxWarning: invalid escape sequence '\]' new_password = """abc123!"#$%&'()*+,-./:;<=>?@[\]^_`{|}~Z""" /usr/lib/python3/dist-packages/irods/test/admin_test.py:406: SyntaxWarning: invalid escape sequence '\]' new_comment = """comment-abc123!"#$%&'()*+,-./:;<=>?@[\]^_{|}~Z""" # omitting backtick due to #170 /usr/lib/python3/dist-packages/irods/test/admin_test.py:425: SyntaxWarning: invalid escape sequence '\]' new_info = """info-abc123!"#$%&'()*+,-./:;<=>?@[\]^_{|}~Z""" # omitting backtick due to #170 /usr/lib/python3/dist-packages/irods/test/data_obj_test.py:37: SyntaxWarning: invalid escape sequence '\.' localhost_with_optional_domain_pattern = re.compile("localhost(\.\S\S*)?$") /usr/lib/python3/dist-packages/irods/test/data_obj_test.py:420: SyntaxWarning: invalid escape sequence '\s' NumThreadsRegex = re.compile("^num_threads\s*=\s*(\d+)", re.MULTILINE) /usr/lib/python3/dist-packages/irods/test/data_obj_test.py:604: SyntaxWarning: invalid escape sequence '\s' "No\s+Checksum\s+Available.+\s+Replica\s\[(\d+)\]", re.IGNORECASE /usr/lib/python3/dist-packages/irods/test/data_obj_test.py:1049: SyntaxWarning: invalid escape sequence '\S' re.finditer("redirect_to_host = (\S+)", search_text), /usr/lib/python3/dist-packages/irods/test/data_obj_test.py:1050: SyntaxWarning: invalid escape sequence '\S' re.finditer("target_host = (\S+)", search_text), /usr/lib/python3/dist-packages/irods/test/rule_test.py:423: SyntaxWarning: invalid escape sequence '\[' self.assertRegexpMatches(lines[0], ".*\[Hello world!\]") /usr/lib/python3/dist-packages/irods/test/rule_test.py:445: SyntaxWarning: invalid escape sequence '\[' self.assertRegexpMatches(lines[0], "\[STRING\]\[\]") /usr/lib/python3/dist-packages/irods/test/rule_test.py:446: SyntaxWarning: invalid escape sequence '\[' self.assertRegexpMatches(lines[1], "\[STRING\]\[\]") /usr/lib/python3/dist-packages/irods/test/rule_test.py:455: SyntaxWarning: invalid escape sequence '\[' self.assertRegexpMatches(lines[0], "\[INTEGER\]\[5\]") /usr/lib/python3/dist-packages/irods/test/rule_test.py:456: SyntaxWarning: invalid escape sequence '\[' self.assertRegexpMatches(lines[1], "\[STRING\]\[A String\]") /usr/lib/python3/dist-packages/irods/test/admin_test.py:379: SyntaxWarning: invalid escape sequence '\]' new_password = """abc123!"#$%&'()*+,-./:;<=>?@[\]^_`{|}~Z""" /usr/lib/python3/dist-packages/irods/test/admin_test.py:406: SyntaxWarning: invalid escape sequence '\]' new_comment = """comment-abc123!"#$%&'()*+,-./:;<=>?@[\]^_{|}~Z""" # omitting backtick due to #170 /usr/lib/python3/dist-packages/irods/test/admin_test.py:425: SyntaxWarning: invalid escape sequence '\]' new_info = """info-abc123!"#$%&'()*+,-./:;<=>?@[\]^_{|}~Z""" # omitting backtick due to #170 /usr/lib/python3/dist-packages/irods/test/data_obj_test.py:37: SyntaxWarning: invalid escape sequence '\.' localhost_with_optional_domain_pattern = re.compile("localhost(\.\S\S*)?$") /usr/lib/python3/dist-packages/irods/test/data_obj_test.py:420: SyntaxWarning: invalid escape sequence '\s' NumThreadsRegex = re.compile("^num_threads\s*=\s*(\d+)", re.MULTILINE) /usr/lib/python3/dist-packages/irods/test/data_obj_test.py:604: SyntaxWarning: invalid escape sequence '\s' "No\s+Checksum\s+Available.+\s+Replica\s\[(\d+)\]", re.IGNORECASE /usr/lib/python3/dist-packages/irods/test/data_obj_test.py:1049: SyntaxWarning: invalid escape sequence '\S' re.finditer("redirect_to_host = (\S+)", search_text), /usr/lib/python3/dist-packages/irods/test/data_obj_test.py:1050: SyntaxWarning: invalid escape sequence '\S' re.finditer("target_host = (\S+)", search_text), /usr/lib/python3/dist-packages/irods/test/rule_test.py:423: SyntaxWarning: invalid escape sequence '\[' self.assertRegexpMatches(lines[0], ".*\[Hello world!\]") /usr/lib/python3/dist-packages/irods/test/rule_test.py:445: SyntaxWarning: invalid escape sequence '\[' self.assertRegexpMatches(lines[0], "\[STRING\]\[\]") /usr/lib/python3/dist-packages/irods/test/rule_test.py:446: SyntaxWarning: invalid escape sequence '\[' self.assertRegexpMatches(lines[1], "\[STRING\]\[\]") /usr/lib/python3/dist-packages/irods/test/rule_test.py:455: SyntaxWarning: invalid escape sequence '\[' self.assertRegexpMatches(lines[0], "\[INTEGER\]\[5\]") /usr/lib/python3/dist-packages/irods/test/rule_test.py:456: SyntaxWarning: invalid escape sequence '\[' self.assertRegexpMatches(lines[1], "\[STRING\]\[A String\]") Setting up python3-pkg-resources (75.8.0-1) ... Setting up python3-setuptools (75.8.0-1) ... Setting up python3-biomaj3-zipkin (0.2.2-3) ... Setting up python3-influxdb (5.3.2-5) ... Setting up python3-flask (3.1.0-2) ... Setting up python3-flask-cors (5.0.0-1) ... Setting up python3-biomaj3-core (3.0.28-4) ... Setting up python3-biomaj3-cli (3.1.11-5) ... Setting up python3-biomaj3-download (3.2.12-2) ... Setting up dh-python (6.20250108) ... Setting up python3-biomaj3-user (3.0.12-2) ... Setting up python3-biomaj3-process (3.0.19-3) ... Setting up python3-biomaj3 (3.1.24-2) ... Setting up python3-biomaj3-daemon (3.0.24-3) ... Processing triggers for libc-bin (2.40-7) ... Processing triggers for ca-certificates (20241223) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/biomaj3-cli-3.1.11/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../biomaj3-cli_3.1.11-5_source.changes dpkg-buildpackage: info: source package biomaj3-cli dpkg-buildpackage: info: source version 3.1.11-5 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Alexandre Detiste dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --with python3 --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:311: python3.12 setup.py clean /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:270: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:270: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) running clean removing '/build/reproducible-path/biomaj3-cli-3.1.11/.pybuild/cpython3_3.12_biomaj-cli/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.12' does not exist -- can't clean it I: pybuild base:311: python3.13 setup.py clean /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:270: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:270: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) running clean removing '/build/reproducible-path/biomaj3-cli-3.1.11/.pybuild/cpython3_3.13_biomaj-cli/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.13' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.12 setup.py config /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:270: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:270: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) running config I: pybuild base:311: python3.13 setup.py config /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:270: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:270: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3.12 setup.py build /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:270: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:270: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) running build running build_py creating /build/reproducible-path/biomaj3-cli-3.1.11/.pybuild/cpython3_3.12_biomaj-cli/build/biomaj_cli copying biomaj_cli/utils.py -> /build/reproducible-path/biomaj3-cli-3.1.11/.pybuild/cpython3_3.12_biomaj-cli/build/biomaj_cli copying biomaj_cli/__init__.py -> /build/reproducible-path/biomaj3-cli-3.1.11/.pybuild/cpython3_3.12_biomaj-cli/build/biomaj_cli running egg_info creating biomaj_cli.egg-info writing biomaj_cli.egg-info/PKG-INFO writing dependency_links to biomaj_cli.egg-info/dependency_links.txt writing requirements to biomaj_cli.egg-info/requires.txt writing top-level names to biomaj_cli.egg-info/top_level.txt writing manifest file 'biomaj_cli.egg-info/SOURCES.txt' reading manifest file 'biomaj_cli.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'biomaj_cli.egg-info/SOURCES.txt' running build_scripts creating build/scripts-3.12 copying and adjusting bin/biomaj-cli.py -> build/scripts-3.12 changing mode of build/scripts-3.12/biomaj-cli.py from 644 to 755 I: pybuild base:311: /usr/bin/python3 setup.py build /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:270: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:270: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) running build running build_py creating /build/reproducible-path/biomaj3-cli-3.1.11/.pybuild/cpython3_3.13_biomaj-cli/build/biomaj_cli copying biomaj_cli/utils.py -> /build/reproducible-path/biomaj3-cli-3.1.11/.pybuild/cpython3_3.13_biomaj-cli/build/biomaj_cli copying biomaj_cli/__init__.py -> /build/reproducible-path/biomaj3-cli-3.1.11/.pybuild/cpython3_3.13_biomaj-cli/build/biomaj_cli running egg_info writing biomaj_cli.egg-info/PKG-INFO writing dependency_links to biomaj_cli.egg-info/dependency_links.txt writing requirements to biomaj_cli.egg-info/requires.txt writing top-level names to biomaj_cli.egg-info/top_level.txt reading manifest file 'biomaj_cli.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'biomaj_cli.egg-info/SOURCES.txt' running build_scripts creating build/scripts-3.13 copying and adjusting bin/biomaj-cli.py -> build/scripts-3.13 changing mode of build/scripts-3.13/biomaj-cli.py from 644 to 755 create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/python3-biomaj3-cli/ -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3.12 setup.py install --root /build/reproducible-path/biomaj3-cli-3.1.11/debian/python3-biomaj3-cli /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:270: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:270: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:79: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running egg_info writing biomaj_cli.egg-info/PKG-INFO writing dependency_links to biomaj_cli.egg-info/dependency_links.txt writing requirements to biomaj_cli.egg-info/requires.txt writing top-level names to biomaj_cli.egg-info/top_level.txt reading manifest file 'biomaj_cli.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'biomaj_cli.egg-info/SOURCES.txt' running build_scripts running install_lib creating /build/reproducible-path/biomaj3-cli-3.1.11/debian/python3-biomaj3-cli/usr/lib/python3.12/dist-packages creating /build/reproducible-path/biomaj3-cli-3.1.11/debian/python3-biomaj3-cli/usr/lib/python3.12/dist-packages/biomaj_cli copying /build/reproducible-path/biomaj3-cli-3.1.11/.pybuild/cpython3_3.12_biomaj-cli/build/biomaj_cli/utils.py -> /build/reproducible-path/biomaj3-cli-3.1.11/debian/python3-biomaj3-cli/usr/lib/python3.12/dist-packages/biomaj_cli copying /build/reproducible-path/biomaj3-cli-3.1.11/.pybuild/cpython3_3.12_biomaj-cli/build/biomaj_cli/__init__.py -> /build/reproducible-path/biomaj3-cli-3.1.11/debian/python3-biomaj3-cli/usr/lib/python3.12/dist-packages/biomaj_cli byte-compiling /build/reproducible-path/biomaj3-cli-3.1.11/debian/python3-biomaj3-cli/usr/lib/python3.12/dist-packages/biomaj_cli/utils.py to utils.cpython-312.pyc byte-compiling /build/reproducible-path/biomaj3-cli-3.1.11/debian/python3-biomaj3-cli/usr/lib/python3.12/dist-packages/biomaj_cli/__init__.py to __init__.cpython-312.pyc running install_egg_info Copying biomaj_cli.egg-info to /build/reproducible-path/biomaj3-cli-3.1.11/debian/python3-biomaj3-cli/usr/lib/python3.12/dist-packages/biomaj_cli-3.1.11.egg-info Skipping SOURCES.txt running install_scripts creating /build/reproducible-path/biomaj3-cli-3.1.11/debian/python3-biomaj3-cli/usr/bin copying build/scripts-3.12/biomaj-cli.py -> /build/reproducible-path/biomaj3-cli-3.1.11/debian/python3-biomaj3-cli/usr/bin changing mode of /build/reproducible-path/biomaj3-cli-3.1.11/debian/python3-biomaj3-cli/usr/bin/biomaj-cli.py to 755 I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/biomaj3-cli-3.1.11/debian/python3-biomaj3-cli /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:270: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:270: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:79: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running egg_info writing biomaj_cli.egg-info/PKG-INFO writing dependency_links to biomaj_cli.egg-info/dependency_links.txt writing requirements to biomaj_cli.egg-info/requires.txt writing top-level names to biomaj_cli.egg-info/top_level.txt reading manifest file 'biomaj_cli.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'biomaj_cli.egg-info/SOURCES.txt' running build_scripts running install_lib creating /build/reproducible-path/biomaj3-cli-3.1.11/debian/python3-biomaj3-cli/usr/lib/python3.13/dist-packages creating /build/reproducible-path/biomaj3-cli-3.1.11/debian/python3-biomaj3-cli/usr/lib/python3.13/dist-packages/biomaj_cli copying /build/reproducible-path/biomaj3-cli-3.1.11/.pybuild/cpython3_3.13_biomaj-cli/build/biomaj_cli/utils.py -> /build/reproducible-path/biomaj3-cli-3.1.11/debian/python3-biomaj3-cli/usr/lib/python3.13/dist-packages/biomaj_cli copying /build/reproducible-path/biomaj3-cli-3.1.11/.pybuild/cpython3_3.13_biomaj-cli/build/biomaj_cli/__init__.py -> /build/reproducible-path/biomaj3-cli-3.1.11/debian/python3-biomaj3-cli/usr/lib/python3.13/dist-packages/biomaj_cli byte-compiling /build/reproducible-path/biomaj3-cli-3.1.11/debian/python3-biomaj3-cli/usr/lib/python3.13/dist-packages/biomaj_cli/utils.py to utils.cpython-313.pyc byte-compiling /build/reproducible-path/biomaj3-cli-3.1.11/debian/python3-biomaj3-cli/usr/lib/python3.13/dist-packages/biomaj_cli/__init__.py to __init__.cpython-313.pyc running install_egg_info Copying biomaj_cli.egg-info to /build/reproducible-path/biomaj3-cli-3.1.11/debian/python3-biomaj3-cli/usr/lib/python3.13/dist-packages/biomaj_cli-3.1.11.egg-info Skipping SOURCES.txt running install_scripts copying build/scripts-3.13/biomaj-cli.py -> /build/reproducible-path/biomaj3-cli-3.1.11/debian/python3-biomaj3-cli/usr/bin changing mode of /build/reproducible-path/biomaj3-cli-3.1.11/debian/python3-biomaj3-cli/usr/bin/biomaj-cli.py to 755 debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/biomaj3-cli-3.1.11' dh_install sed -i '1s;^;#!/usr/bin/python3\n;' debian/python3-biomaj3-cli/usr/bin/biomaj-cli.py make[1]: Leaving directory '/build/reproducible-path/biomaj3-cli-3.1.11' dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: Recommends field of package python3-biomaj3-cli: substitution variable ${python3:Recommends} used, but is not defined dpkg-gencontrol: warning: Suggests field of package python3-biomaj3-cli: substitution variable ${python3:Suggests} used, but is not defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-biomaj3-cli' in '../python3-biomaj3-cli_3.1.11-5_all.deb'. dpkg-genbuildinfo --build=binary -O../biomaj3-cli_3.1.11-5_amd64.buildinfo dpkg-genchanges --build=binary -O../biomaj3-cli_3.1.11-5_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2608634 and its subdirectories I: Current time: Thu Mar 26 19:58:59 -12 2026 I: pbuilder-time-stamp: 1774598339 Sat Feb 22 01:36:00 UTC 2025 I: 1st build successful. Starting 2nd build on remote node ionos1-amd64.debian.net. Sat Feb 22 01:36:00 UTC 2025 I: Preparing to do remote build '2' on ionos1-amd64.debian.net. Sat Feb 22 01:36:00 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos1-amd64.debian.net is marked as down. Sat Feb 22 01:36:00 UTC 2025 - checking via ssh if ionos1-amd64.debian.net is up. removed '/tmp/read-only-fs-test-DV1qIe' ==================================================================================== Sat Feb 22 01:36:01 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos1-amd64, called using "2 biomaj3-cli unstable /srv/reproducible-results/rbuild-debian/r-b-build.GJYO9PGR 3.1.11-5" as arguments. Sat Feb 22 01:36:01 UTC 2025 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-SOMkCVU7" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Sat Feb 22 01:36:02 UTC 2025 I: Downloading source for unstable/biomaj3-cli=3.1.11-5 Reading package lists... NOTICE: 'biomaj3-cli' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/biomaj3-cli.git Please use: git clone https://salsa.debian.org/med-team/biomaj3-cli.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 32.0 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main biomaj3-cli 3.1.11-5 (dsc) [2140 B] Get:2 http://deb.debian.org/debian unstable/main biomaj3-cli 3.1.11-5 (tar) [16.5 kB] Get:3 http://deb.debian.org/debian unstable/main biomaj3-cli 3.1.11-5 (diff) [13.3 kB] Fetched 32.0 kB in 0s (778 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'biomaj3-cli' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/biomaj3-cli.git Please use: git clone https://salsa.debian.org/med-team/biomaj3-cli.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 32.0 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main biomaj3-cli 3.1.11-5 (dsc) [2140 B] Get:2 http://deb.debian.org/debian unstable/main biomaj3-cli 3.1.11-5 (tar) [16.5 kB] Get:3 http://deb.debian.org/debian unstable/main biomaj3-cli 3.1.11-5 (diff) [13.3 kB] Fetched 32.0 kB in 0s (778 kB/s) Download complete and in download only mode ============================================================================= Re-Building biomaj3-cli in unstable on amd64 on ionos1-amd64 now. Date: Sat Feb 22 01:36:02 UTC 2025 Date UTC: Sat Feb 22 01:36:02 UTC 2025 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.GJYO9PGR + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.GJYO9PGR/pbuilderrc_HiJs + case ${ARCH} in + case $ARCH in + locale=et_EE + language=et + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' biomaj3-cli = debian-installer -o biomaj3-cli = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' biomaj3-cli = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.GJYO9PGR/pbuilderrc_HiJs --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.GJYO9PGR/b2 --logfile b2/build.log biomaj3-cli_3.1.11-5.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Sat Feb 22 15:36:03 +14 2025 I: pbuilder-time-stamp: 1740188163 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [biomaj3-cli_3.1.11-5.dsc] I: copying [./biomaj3-cli_3.1.11.orig.tar.xz] I: copying [./biomaj3-cli_3.1.11-5.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./biomaj3-cli_3.1.11-5.dsc: unsupported subcommand dpkg-source: info: extracting biomaj3-cli in biomaj3-cli-3.1.11 dpkg-source: info: unpacking biomaj3-cli_3.1.11.orig.tar.xz dpkg-source: info: unpacking biomaj3-cli_3.1.11-5.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2994825/tmp/hooks/D01_modify_environment starting debug: Running on ionos1-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Feb 22 01:36 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/2994825/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/2994825/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.2.37(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' DIRSTACK=() DISTRIBUTION=unstable EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=ef712901fe3045ebaada891e60179820 LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=2994825 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.GJYO9PGR/pbuilderrc_HiJs --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.GJYO9PGR/b2 --logfile b2/build.log biomaj3-cli_3.1.11-5.dsc' SUDO_GID=110 SUDO_UID=105 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://46.16.76.132:3128 I: uname -a Linux i-capture-the-hostname 6.1.0-31-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.128-1 (2025-02-07) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2994825/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, python3-all, python3-requests, python3-setuptools, python3-biomaj3-core, python3-biomaj3-daemon dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19775 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-requests; however: Package python3-requests is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-biomaj3-core; however: Package python3-biomaj3-core is not installed. pbuilder-satisfydepends-dummy depends on python3-biomaj3-daemon; however: Package python3-biomaj3-daemon is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fonts-font-awesome{a} fonts-lato{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbrotli1{a} libcom-err2{a} libcurl3t64-gnutls{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgnutls30t64{a} libgssapi-krb5-2{a} libicu72{a} libidn2-0{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap2{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libnsl2{a} libp11-kit0{a} libpipeline1{a} libprotobuf32t64{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libtasn1-6{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} libyaml-0-2{a} m4{a} man-db{a} media-types{a} netbase{a} openssl{a} po-debconf{a} python3{a} python3-all{a} python3-async-timeout{a} python3-autocommand{a} python3-bcrypt{a} python3-biomaj3{a} python3-biomaj3-cli{a} python3-biomaj3-core{a} python3-biomaj3-daemon{a} python3-biomaj3-download{a} python3-biomaj3-process{a} python3-biomaj3-user{a} python3-biomaj3-zipkin{a} python3-blinker{a} python3-bson{a} python3-certifi{a} python3-chardet{a} python3-charset-normalizer{a} python3-click{a} python3-consul{a} python3-dateutil{a} python3-decorator{a} python3-defusedxml{a} python3-deprecated{a} python3-dnspython{a} python3-elasticsearch{a} python3-flask{a} python3-flask-cors{a} python3-ftputil{a} python3-humanfriendly{a} python3-idna{a} python3-inflect{a} python3-influxdb{a} python3-irodsclient{a} python3-itsdangerous{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-jinja2{a} python3-ldap3{a} python3-markupsafe{a} python3-minimal{a} python3-more-itertools{a} python3-msgpack{a} python3-packaging{a} python3-pika{a} python3-pkg-resources{a} python3-prettytable{a} python3-prometheus-client{a} python3-protobuf{a} python3-py-zipkin{a} python3-pyasn1{a} python3-pycurl{a} python3-pymongo{a} python3-pytz{a} python3-redis{a} python3-requests{a} python3-setuptools{a} python3-simpleeval{a} python3-tabulate{a} python3-tenacity{a} python3-typeguard{a} python3-typing-extensions{a} python3-tz{a} python3-urllib3{a} python3-wcwidth{a} python3-werkzeug{a} python3-wrapt{a} python3-yaml{a} python3-yapsy{a} python3-zipp{a} python3.12{a} python3.12-minimal{a} python3.13{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} sphinx-rtd-theme-common{a} tzdata{a} unzip{a} The following packages are RECOMMENDED but will NOT be installed: curl javascript-common krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx publicsuffix python3-asgiref python3-babel python3-bson-ext python3-cryptography python3-dotenv python3-gridfs python3-h2 python3-httpcore python3-httpx python3-openssl python3-pyinotify python3-pymongo-ext wget 0 packages upgraded, 154 newly installed, 0 to remove and 0 not upgraded. Need to get 50.6 MB of archives. After unpacking 197 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 fonts-lato all 2.015-1 [2780 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 libpython3.13-minimal amd64 3.13.2-1 [859 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.6.4-1 [106 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 python3.13-minimal amd64 3.13.2-1 [2205 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 python3-minimal amd64 3.13.1-2 [27.0 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 media-types all 11.0.0 [27.6 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 netbase all 6.4 [12.8 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 tzdata all 2025a-2 [259 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 libffi8 amd64 3.4.7-1 [23.9 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 readline-common all 8.2-6 [69.4 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 libreadline8t64 amd64 8.2-6 [169 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 libpython3.13-stdlib amd64 3.13.2-1 [1979 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 python3.13 amd64 3.13.2-1 [745 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 libpython3-stdlib amd64 3.13.1-2 [9952 B] Get: 15 http://deb.debian.org/debian unstable/main amd64 python3 amd64 3.13.1-2 [28.0 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 libpython3.12-minimal amd64 3.12.9-1 [817 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 python3.12-minimal amd64 3.12.9-1 [2163 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 openssl amd64 3.4.1-1 [1427 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 ca-certificates all 20241223 [164 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.1-1 [243 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-7 [1185 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40.4-4 [92.4 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-5 [294 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3 [493 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.17-3 [862 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.1-1 [770 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.24.1 [90.9 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-3 [539 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 41 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 42 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 libunistring5 amd64 1.3-1 [476 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 libicu72 amd64 72.1-6 [9421 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB] Get: 46 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.1-1 [1680 kB] Get: 47 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 48 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 49 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.24.1 [920 kB] Get: 50 http://deb.debian.org/debian unstable/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 python3-more-itertools all 10.6.0-1 [65.3 kB] Get: 52 http://deb.debian.org/debian unstable/main amd64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 53 http://deb.debian.org/debian unstable/main amd64 python3-typeguard all 4.4.1-1 [37.0 kB] Get: 54 http://deb.debian.org/debian unstable/main amd64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 55 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 56 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 57 http://deb.debian.org/debian unstable/main amd64 python3-pkg-resources all 75.8.0-1 [222 kB] Get: 58 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 59 http://deb.debian.org/debian unstable/main amd64 python3-zipp all 3.21.0-1 [10.6 kB] Get: 60 http://deb.debian.org/debian unstable/main amd64 python3-setuptools all 75.8.0-1 [724 kB] Get: 61 http://deb.debian.org/debian unstable/main amd64 dh-python all 6.20250108 [113 kB] Get: 62 http://deb.debian.org/debian unstable/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [517 kB] Get: 63 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b6 [302 kB] Get: 64 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.2-1 [24.0 kB] Get: 65 http://deb.debian.org/debian unstable/main amd64 libidn2-0 amd64 2.3.7-2+b1 [129 kB] Get: 66 http://deb.debian.org/debian unstable/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB] Get: 67 http://deb.debian.org/debian unstable/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get: 68 http://deb.debian.org/debian unstable/main amd64 libgnutls30t64 amd64 3.8.9-2 [1464 kB] Get: 69 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.21.3-4 [32.8 kB] Get: 70 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.21.3-4 [80.9 kB] Get: 71 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get: 72 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.21.3-4 [326 kB] Get: 73 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.21.3-4 [138 kB] Get: 74 http://deb.debian.org/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-8+b1 [19.9 kB] Get: 75 http://deb.debian.org/debian unstable/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-8+b1 [57.6 kB] Get: 76 http://deb.debian.org/debian unstable/main amd64 libldap2 amd64 2.6.9+dfsg-1 [192 kB] Get: 77 http://deb.debian.org/debian unstable/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB] Get: 78 http://deb.debian.org/debian unstable/main amd64 libnghttp3-9 amd64 1.6.0-2 [64.8 kB] Get: 79 http://deb.debian.org/debian unstable/main amd64 libngtcp2-16 amd64 1.9.1-1 [119 kB] Get: 80 http://deb.debian.org/debian unstable/main amd64 libngtcp2-crypto-gnutls8 amd64 1.9.1-1 [18.5 kB] Get: 81 http://deb.debian.org/debian unstable/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 82 http://deb.debian.org/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get: 83 http://deb.debian.org/debian unstable/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 84 http://deb.debian.org/debian unstable/main amd64 libcurl3t64-gnutls amd64 8.12.1-2 [365 kB] Get: 85 http://deb.debian.org/debian unstable/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 86 http://deb.debian.org/debian unstable/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 87 http://deb.debian.org/debian unstable/main amd64 libjs-sphinxdoc all 8.1.3-5 [30.5 kB] Get: 88 http://deb.debian.org/debian unstable/main amd64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 89 http://deb.debian.org/debian unstable/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.3+b1 [83.1 kB] Get: 90 http://deb.debian.org/debian unstable/main amd64 libnsl2 amd64 1.3.0-3+b3 [40.6 kB] Get: 91 http://deb.debian.org/debian unstable/main amd64 libprotobuf32t64 amd64 3.21.12-10+b4 [982 kB] Get: 92 http://deb.debian.org/debian unstable/main amd64 libpython3.12-stdlib amd64 3.12.9-1 [1974 kB] Get: 93 http://deb.debian.org/debian unstable/main amd64 libyaml-0-2 amd64 0.2.5-2 [52.5 kB] Get: 94 http://deb.debian.org/debian unstable/main amd64 python3.12 amd64 3.12.9-1 [681 kB] Get: 95 http://deb.debian.org/debian unstable/main amd64 python3-all amd64 3.13.1-2 [1056 B] Get: 96 http://deb.debian.org/debian unstable/main amd64 python3-async-timeout all 5.0.1-1 [8324 B] Get: 97 http://deb.debian.org/debian unstable/main amd64 python3-bcrypt amd64 4.2.0-2.1 [236 kB] Get: 98 http://deb.debian.org/debian unstable/main amd64 python3-certifi all 2025.1.31+ds-1 [9652 B] Get: 99 http://deb.debian.org/debian unstable/main amd64 python3-urllib3 all 2.3.0-1 [114 kB] Get: 100 http://deb.debian.org/debian unstable/main amd64 python3-elasticsearch all 7.17.6-1 [113 kB] Get: 101 http://deb.debian.org/debian unstable/main amd64 python3-charset-normalizer amd64 3.4.1-1 [142 kB] Get: 102 http://deb.debian.org/debian unstable/main amd64 python3-idna all 3.10-1 [42.0 kB] Get: 103 http://deb.debian.org/debian unstable/main amd64 python3-chardet all 5.2.0+dfsg-2 [108 kB] Get: 104 http://deb.debian.org/debian unstable/main amd64 python3-requests all 2.32.3+dfsg-4 [72.1 kB] Get: 105 http://deb.debian.org/debian unstable/main amd64 python3-biomaj3-core all 3.0.28-4 [25.1 kB] Get: 106 http://deb.debian.org/debian unstable/main amd64 python3-biomaj3-cli all 3.1.11-5 [18.9 kB] Get: 107 http://deb.debian.org/debian unstable/main amd64 python3-py-zipkin all 1.2.8-2 [36.4 kB] Get: 108 http://deb.debian.org/debian unstable/main amd64 python3-biomaj3-zipkin all 0.2.2-3 [15.1 kB] Get: 109 http://deb.debian.org/debian unstable/main amd64 python3-blinker all 1.9.0-1 [12.6 kB] Get: 110 http://deb.debian.org/debian unstable/main amd64 python3-click all 8.2.0-1 [98.7 kB] Get: 111 http://deb.debian.org/debian unstable/main amd64 python3-itsdangerous all 2.2.0-2 [18.1 kB] Get: 112 http://deb.debian.org/debian unstable/main amd64 python3-markupsafe amd64 2.1.5-1+b2 [13.9 kB] Get: 113 http://deb.debian.org/debian unstable/main amd64 python3-jinja2 all 3.1.5-2 [107 kB] Get: 114 http://deb.debian.org/debian unstable/main amd64 python3-werkzeug all 3.1.3-2 [207 kB] Get: 115 http://deb.debian.org/debian unstable/main amd64 python3-flask all 3.1.0-2 [106 kB] Get: 116 http://deb.debian.org/debian unstable/main amd64 python3-ftputil all 5.1.0-1 [40.4 kB] Get: 117 http://deb.debian.org/debian unstable/main amd64 python3-humanfriendly all 10.0-6 [85.6 kB] Get: 118 http://deb.debian.org/debian unstable/main amd64 python3-defusedxml all 0.7.1-3 [43.4 kB] Get: 119 http://deb.debian.org/debian unstable/main amd64 python3-wcwidth all 0.2.13+dfsg1-1 [24.9 kB] Get: 120 http://deb.debian.org/debian unstable/main amd64 python3-prettytable all 3.12.0-1 [39.5 kB] Get: 121 http://deb.debian.org/debian unstable/main amd64 python3-irodsclient all 3.0.0-1 [213 kB] Get: 122 http://deb.debian.org/debian unstable/main amd64 python3-pika all 1.3.2-1 [125 kB] Get: 123 http://deb.debian.org/debian unstable/main amd64 python3-decorator all 5.1.1-5 [15.1 kB] Get: 124 http://deb.debian.org/debian unstable/main amd64 python3-prometheus-client all 0.21.1+ds1-1 [44.9 kB] Get: 125 http://deb.debian.org/debian unstable/main amd64 python3-protobuf amd64 3.21.12-10+b4 [272 kB] Get: 126 http://deb.debian.org/debian unstable/main amd64 python3-pycurl amd64 7.45.4-1 [77.7 kB] Get: 127 http://deb.debian.org/debian unstable/main amd64 python3-wrapt amd64 1.15.0-4 [43.5 kB] Get: 128 http://deb.debian.org/debian unstable/main amd64 python3-deprecated all 1.2.18-1 [14.8 kB] Get: 129 http://deb.debian.org/debian unstable/main amd64 python3-packaging all 24.2-1 [55.3 kB] Get: 130 http://deb.debian.org/debian unstable/main amd64 python3-redis all 4.3.4-4 [185 kB] Get: 131 http://deb.debian.org/debian unstable/main amd64 python3-simpleeval all 1.0.3-1 [24.0 kB] Get: 132 http://deb.debian.org/debian unstable/main amd64 python3-tenacity all 8.4.2+really8.4.1-2 [46.0 kB] Get: 133 http://deb.debian.org/debian unstable/main amd64 python3-yaml amd64 6.0.2-1+b1 [178 kB] Get: 134 http://deb.debian.org/debian unstable/main amd64 python3-biomaj3-download all 3.2.12-2 [49.4 kB] Get: 135 http://deb.debian.org/debian unstable/main amd64 python3-biomaj3-process all 3.0.19-3 [25.3 kB] Get: 136 http://deb.debian.org/debian unstable/main amd64 python3-consul all 1.5.1+dfsg-1 [22.7 kB] Get: 137 http://deb.debian.org/debian unstable/main amd64 python3-pyasn1 all 0.6.1-1 [68.9 kB] Get: 138 http://deb.debian.org/debian unstable/main amd64 python3-ldap3 all 2.9.1-2 [235 kB] Get: 139 http://deb.debian.org/debian unstable/main amd64 python3-tabulate all 0.9.0-1 [45.9 kB] Get: 140 http://deb.debian.org/debian unstable/main amd64 python3-biomaj3-user all 3.0.12-2 [19.7 kB] Get: 141 http://deb.debian.org/debian unstable/main amd64 python3-dateutil all 2.9.0-3 [79.3 kB] Get: 142 http://deb.debian.org/debian unstable/main amd64 python3-msgpack amd64 1.0.3-3+b3 [112 kB] Get: 143 http://deb.debian.org/debian unstable/main amd64 python3-pytz all 2025.1-3 [150 kB] Get: 144 http://deb.debian.org/debian unstable/main amd64 python3-tz all 2025.1-3 [4004 B] Get: 145 http://deb.debian.org/debian unstable/main amd64 python3-influxdb all 5.3.2-5 [53.5 kB] Get: 146 http://deb.debian.org/debian unstable/main amd64 python3-bson all 4.10.1-5 [87.1 kB] Get: 147 http://deb.debian.org/debian unstable/main amd64 python3-dnspython all 2.7.0-1 [164 kB] Get: 148 http://deb.debian.org/debian unstable/main amd64 python3-pymongo all 4.10.1-5 [272 kB] Get: 149 http://deb.debian.org/debian unstable/main amd64 python3-yapsy all 1.12.2-3 [30.4 kB] Get: 150 http://deb.debian.org/debian unstable/main amd64 unzip amd64 6.0-28 [166 kB] Get: 151 http://deb.debian.org/debian unstable/main amd64 python3-biomaj3 all 3.1.24-2 [65.2 kB] Get: 152 http://deb.debian.org/debian unstable/main amd64 sphinx-rtd-theme-common all 3.0.2+dfsg-2 [1023 kB] Get: 153 http://deb.debian.org/debian unstable/main amd64 python3-flask-cors all 5.0.0-1 [46.3 kB] Get: 154 http://deb.debian.org/debian unstable/main amd64 python3-biomaj3-daemon all 3.0.24-3 [30.7 kB] Fetched 50.6 MB in 3s (19.9 MB/s) Preconfiguring packages ... 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Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:amd64 (0.0.8-1+b2) ... Setting up libtasn1-6:amd64 (4.20.0-2) ... Setting up netbase (6.4) ... Setting up libngtcp2-16:amd64 (1.9.1-1) ... Setting up libkrb5-3:amd64 (1.21.3-4) ... Setting up libssh2-1t64:amd64 (1.11.1-1) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up openssl (3.4.1-1) ... Setting up readline-common (8.2-6) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... Setting up sphinx-rtd-theme-common (3.0.2+dfsg-2) ... Setting up libldap2:amd64 (2.6.9+dfsg-1) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up automake (1:1.17-3) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up python3.12-minimal (3.12.9-1) ... Setting up gettext (0.23.1-1) ... Setting up libtool (2.5.4-3) ... Setting up libidn2-0:amd64 (2.3.7-2+b1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up ca-certificates (20241223) ... Updating certificates in /etc/ssl/certs... 152 added, 0 removed; done. Setting up libp11-kit0:amd64 (0.25.5-3) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-4) ... Setting up libjs-sphinxdoc (8.1.3-5) ... Setting up libreadline8t64:amd64 (8.2-6) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up groff-base (1.23.0-7) ... Setting up libpython3.13-stdlib:amd64 (3.13.2-1) ... Setting up libpython3-stdlib:amd64 (3.13.1-2) ... Setting up libgnutls30t64:amd64 (3.8.9-2) ... Setting up libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ... Setting up python3.13 (3.13.2-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpsl5t64:amd64 (0.21.2-1.1+b1) ... Setting up python3 (3.13.1-2) ... Setting up python3-zipp (3.21.0-1) ... Setting up python3-click (8.2.0-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up python3-markupsafe (2.1.5-1+b2) ... Setting up python3-simpleeval (1.0.3-1) ... Setting up python3-async-timeout (5.0.1-1) ... Setting up python3-bson (4.10.1-5) ... Setting up python3-decorator (5.1.1-5) ... Setting up python3-jinja2 (3.1.5-2) ... Setting up python3-packaging (24.2-1) ... Setting up python3-chardet (5.2.0+dfsg-2) ... Setting up python3-wcwidth (0.2.13+dfsg1-1) ... Setting up python3-humanfriendly (10.0-6) ... Setting up python3-certifi (2025.1.31+ds-1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up python3-werkzeug (3.1.3-2) ... Setting up python3-idna (3.10-1) ... Setting up python3-wrapt (1.15.0-4) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up python3-urllib3 (2.3.0-1) ... Setting up python3-dnspython (2.7.0-1) ... Setting up libnsl2:amd64 (1.3.0-3+b3) ... Setting up python3-pyasn1 (0.6.1-1) ... Setting up python3-dateutil (2.9.0-3) ... Setting up python3-msgpack (1.0.3-3+b3) ... Setting up python3-py-zipkin (1.2.8-2) ... Setting up python3-protobuf (3.21.12-10+b4) ... Setting up python3-pymongo (4.10.1-5) ... Setting up python3-prettytable (3.12.0-1) ... Setting up python3-deprecated (1.2.18-1) ... Setting up libngtcp2-crypto-gnutls8:amd64 (1.9.1-1) ... Setting up python3-yapsy (1.12.2-3) ... Setting up python3-blinker (1.9.0-1) ... Setting up python3-more-itertools (10.6.0-1) ... Setting up python3-elasticsearch (7.17.6-1) ... Setting up python3-ftputil (5.1.0-1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up libpython3.12-stdlib:amd64 (3.12.9-1) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up python3-defusedxml (0.7.1-3) ... Setting up python3-charset-normalizer (3.4.1-1) ... Setting up python3-pika (1.3.2-1) ... Setting up python3-tenacity (8.4.2+really8.4.1-2) ... Setting up python3-bcrypt (4.2.0-2.1) ... Setting up python3.12 (3.12.9-1) ... Setting up python3-typeguard (4.4.1-1) ... Setting up libcurl3t64-gnutls:amd64 (8.12.1-2) ... Setting up python3-tabulate (0.9.0-1) ... Setting up python3-itsdangerous (2.2.0-2) ... Setting up python3-all (3.13.1-2) ... Setting up python3-yaml (6.0.2-1+b1) ... Setting up debhelper (13.24.1) ... Setting up python3-pytz (2025.1-3) ... Setting up python3-ldap3 (2.9.1-2) ... Setting up python3-tz (2025.1-3) ... Setting up python3-inflect (7.3.1-2) ... Setting up python3-prometheus-client (0.21.1+ds1-1) ... Setting up python3-pycurl (7.45.4-1) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-requests (2.32.3+dfsg-4) ... Setting up python3-redis (4.3.4-4) ... Setting up python3-consul (1.5.1+dfsg-1) ... Setting up python3-irodsclient (3.0.0-1) ... /usr/lib/python3/dist-packages/irods/test/admin_test.py:379: SyntaxWarning: invalid escape sequence '\]' new_password = """abc123!"#$%&'()*+,-./:;<=>?@[\]^_`{|}~Z""" /usr/lib/python3/dist-packages/irods/test/admin_test.py:406: SyntaxWarning: invalid escape sequence '\]' new_comment = """comment-abc123!"#$%&'()*+,-./:;<=>?@[\]^_{|}~Z""" # omitting backtick due to #170 /usr/lib/python3/dist-packages/irods/test/admin_test.py:425: SyntaxWarning: invalid escape sequence '\]' new_info = """info-abc123!"#$%&'()*+,-./:;<=>?@[\]^_{|}~Z""" # omitting backtick due to #170 /usr/lib/python3/dist-packages/irods/test/data_obj_test.py:37: SyntaxWarning: invalid escape sequence '\.' localhost_with_optional_domain_pattern = re.compile("localhost(\.\S\S*)?$") /usr/lib/python3/dist-packages/irods/test/data_obj_test.py:420: SyntaxWarning: invalid escape sequence '\s' NumThreadsRegex = re.compile("^num_threads\s*=\s*(\d+)", re.MULTILINE) /usr/lib/python3/dist-packages/irods/test/data_obj_test.py:604: SyntaxWarning: invalid escape sequence '\s' "No\s+Checksum\s+Available.+\s+Replica\s\[(\d+)\]", re.IGNORECASE /usr/lib/python3/dist-packages/irods/test/data_obj_test.py:1049: SyntaxWarning: invalid escape sequence '\S' re.finditer("redirect_to_host = (\S+)", search_text), /usr/lib/python3/dist-packages/irods/test/data_obj_test.py:1050: SyntaxWarning: invalid escape sequence '\S' re.finditer("target_host = (\S+)", search_text), /usr/lib/python3/dist-packages/irods/test/rule_test.py:423: SyntaxWarning: invalid escape sequence '\[' self.assertRegexpMatches(lines[0], ".*\[Hello world!\]") /usr/lib/python3/dist-packages/irods/test/rule_test.py:445: SyntaxWarning: invalid escape sequence '\[' self.assertRegexpMatches(lines[0], "\[STRING\]\[\]") /usr/lib/python3/dist-packages/irods/test/rule_test.py:446: SyntaxWarning: invalid escape sequence '\[' self.assertRegexpMatches(lines[1], "\[STRING\]\[\]") /usr/lib/python3/dist-packages/irods/test/rule_test.py:455: SyntaxWarning: invalid escape sequence '\[' self.assertRegexpMatches(lines[0], "\[INTEGER\]\[5\]") /usr/lib/python3/dist-packages/irods/test/rule_test.py:456: SyntaxWarning: invalid escape sequence '\[' self.assertRegexpMatches(lines[1], "\[STRING\]\[A String\]") /usr/lib/python3/dist-packages/irods/test/admin_test.py:379: SyntaxWarning: invalid escape sequence '\]' new_password = """abc123!"#$%&'()*+,-./:;<=>?@[\]^_`{|}~Z""" /usr/lib/python3/dist-packages/irods/test/admin_test.py:406: SyntaxWarning: invalid escape sequence '\]' new_comment = """comment-abc123!"#$%&'()*+,-./:;<=>?@[\]^_{|}~Z""" # omitting backtick due to #170 /usr/lib/python3/dist-packages/irods/test/admin_test.py:425: SyntaxWarning: invalid escape sequence '\]' new_info = """info-abc123!"#$%&'()*+,-./:;<=>?@[\]^_{|}~Z""" # omitting backtick due to #170 /usr/lib/python3/dist-packages/irods/test/data_obj_test.py:37: SyntaxWarning: invalid escape sequence '\.' localhost_with_optional_domain_pattern = re.compile("localhost(\.\S\S*)?$") /usr/lib/python3/dist-packages/irods/test/data_obj_test.py:420: SyntaxWarning: invalid escape sequence '\s' NumThreadsRegex = re.compile("^num_threads\s*=\s*(\d+)", re.MULTILINE) /usr/lib/python3/dist-packages/irods/test/data_obj_test.py:604: SyntaxWarning: invalid escape sequence '\s' "No\s+Checksum\s+Available.+\s+Replica\s\[(\d+)\]", re.IGNORECASE /usr/lib/python3/dist-packages/irods/test/data_obj_test.py:1049: SyntaxWarning: invalid escape sequence '\S' re.finditer("redirect_to_host = (\S+)", search_text), /usr/lib/python3/dist-packages/irods/test/data_obj_test.py:1050: SyntaxWarning: invalid escape sequence '\S' re.finditer("target_host = (\S+)", search_text), /usr/lib/python3/dist-packages/irods/test/rule_test.py:423: SyntaxWarning: invalid escape sequence '\[' self.assertRegexpMatches(lines[0], ".*\[Hello world!\]") /usr/lib/python3/dist-packages/irods/test/rule_test.py:445: SyntaxWarning: invalid escape sequence '\[' self.assertRegexpMatches(lines[0], "\[STRING\]\[\]") /usr/lib/python3/dist-packages/irods/test/rule_test.py:446: SyntaxWarning: invalid escape sequence '\[' self.assertRegexpMatches(lines[1], "\[STRING\]\[\]") /usr/lib/python3/dist-packages/irods/test/rule_test.py:455: SyntaxWarning: invalid escape sequence '\[' self.assertRegexpMatches(lines[0], "\[INTEGER\]\[5\]") /usr/lib/python3/dist-packages/irods/test/rule_test.py:456: SyntaxWarning: invalid escape sequence '\[' self.assertRegexpMatches(lines[1], "\[STRING\]\[A String\]") Setting up python3-pkg-resources (75.8.0-1) ... Setting up python3-setuptools (75.8.0-1) ... Setting up python3-biomaj3-zipkin (0.2.2-3) ... Setting up python3-influxdb (5.3.2-5) ... Setting up python3-flask (3.1.0-2) ... Setting up python3-flask-cors (5.0.0-1) ... Setting up python3-biomaj3-core (3.0.28-4) ... Setting up python3-biomaj3-cli (3.1.11-5) ... Setting up python3-biomaj3-download (3.2.12-2) ... Setting up dh-python (6.20250108) ... Setting up python3-biomaj3-user (3.0.12-2) ... Setting up python3-biomaj3-process (3.0.19-3) ... Setting up python3-biomaj3 (3.1.24-2) ... Setting up python3-biomaj3-daemon (3.0.24-3) ... Processing triggers for libc-bin (2.40-7) ... Processing triggers for ca-certificates (20241223) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/2994825/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for unstable I: user script /srv/workspace/pbuilder/2994825/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/biomaj3-cli-3.1.11/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../biomaj3-cli_3.1.11-5_source.changes dpkg-buildpackage: info: source package biomaj3-cli dpkg-buildpackage: info: source version 3.1.11-5 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Alexandre Detiste dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --with python3 --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:311: python3.12 setup.py clean /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:270: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:270: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) running clean removing '/build/reproducible-path/biomaj3-cli-3.1.11/.pybuild/cpython3_3.12_biomaj-cli/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.12' does not exist -- can't clean it I: pybuild base:311: python3.13 setup.py clean /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:270: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:270: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) running clean removing '/build/reproducible-path/biomaj3-cli-3.1.11/.pybuild/cpython3_3.13_biomaj-cli/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.13' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.12 setup.py config /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:270: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:270: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) running config I: pybuild base:311: python3.13 setup.py config /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:270: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:270: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3.12 setup.py build /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:270: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:270: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) running build running build_py creating /build/reproducible-path/biomaj3-cli-3.1.11/.pybuild/cpython3_3.12_biomaj-cli/build/biomaj_cli copying biomaj_cli/__init__.py -> /build/reproducible-path/biomaj3-cli-3.1.11/.pybuild/cpython3_3.12_biomaj-cli/build/biomaj_cli copying biomaj_cli/utils.py -> /build/reproducible-path/biomaj3-cli-3.1.11/.pybuild/cpython3_3.12_biomaj-cli/build/biomaj_cli running egg_info creating biomaj_cli.egg-info writing biomaj_cli.egg-info/PKG-INFO writing dependency_links to biomaj_cli.egg-info/dependency_links.txt writing requirements to biomaj_cli.egg-info/requires.txt writing top-level names to biomaj_cli.egg-info/top_level.txt writing manifest file 'biomaj_cli.egg-info/SOURCES.txt' reading manifest file 'biomaj_cli.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'biomaj_cli.egg-info/SOURCES.txt' running build_scripts creating build/scripts-3.12 copying and adjusting bin/biomaj-cli.py -> build/scripts-3.12 changing mode of build/scripts-3.12/biomaj-cli.py from 644 to 755 I: pybuild base:311: /usr/bin/python3 setup.py build /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:270: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:270: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) running build running build_py creating /build/reproducible-path/biomaj3-cli-3.1.11/.pybuild/cpython3_3.13_biomaj-cli/build/biomaj_cli copying biomaj_cli/__init__.py -> /build/reproducible-path/biomaj3-cli-3.1.11/.pybuild/cpython3_3.13_biomaj-cli/build/biomaj_cli copying biomaj_cli/utils.py -> /build/reproducible-path/biomaj3-cli-3.1.11/.pybuild/cpython3_3.13_biomaj-cli/build/biomaj_cli running egg_info writing biomaj_cli.egg-info/PKG-INFO writing dependency_links to biomaj_cli.egg-info/dependency_links.txt writing requirements to biomaj_cli.egg-info/requires.txt writing top-level names to biomaj_cli.egg-info/top_level.txt reading manifest file 'biomaj_cli.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'biomaj_cli.egg-info/SOURCES.txt' running build_scripts creating build/scripts-3.13 copying and adjusting bin/biomaj-cli.py -> build/scripts-3.13 changing mode of build/scripts-3.13/biomaj-cli.py from 644 to 755 create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/python3-biomaj3-cli/ -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3.12 setup.py install --root /build/reproducible-path/biomaj3-cli-3.1.11/debian/python3-biomaj3-cli /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:270: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:270: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:79: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running egg_info writing biomaj_cli.egg-info/PKG-INFO writing dependency_links to biomaj_cli.egg-info/dependency_links.txt writing requirements to biomaj_cli.egg-info/requires.txt writing top-level names to biomaj_cli.egg-info/top_level.txt reading manifest file 'biomaj_cli.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'biomaj_cli.egg-info/SOURCES.txt' running build_scripts running install_lib creating /build/reproducible-path/biomaj3-cli-3.1.11/debian/python3-biomaj3-cli/usr/lib/python3.12/dist-packages creating /build/reproducible-path/biomaj3-cli-3.1.11/debian/python3-biomaj3-cli/usr/lib/python3.12/dist-packages/biomaj_cli copying /build/reproducible-path/biomaj3-cli-3.1.11/.pybuild/cpython3_3.12_biomaj-cli/build/biomaj_cli/__init__.py -> /build/reproducible-path/biomaj3-cli-3.1.11/debian/python3-biomaj3-cli/usr/lib/python3.12/dist-packages/biomaj_cli copying /build/reproducible-path/biomaj3-cli-3.1.11/.pybuild/cpython3_3.12_biomaj-cli/build/biomaj_cli/utils.py -> /build/reproducible-path/biomaj3-cli-3.1.11/debian/python3-biomaj3-cli/usr/lib/python3.12/dist-packages/biomaj_cli byte-compiling /build/reproducible-path/biomaj3-cli-3.1.11/debian/python3-biomaj3-cli/usr/lib/python3.12/dist-packages/biomaj_cli/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/biomaj3-cli-3.1.11/debian/python3-biomaj3-cli/usr/lib/python3.12/dist-packages/biomaj_cli/utils.py to utils.cpython-312.pyc running install_egg_info Copying biomaj_cli.egg-info to /build/reproducible-path/biomaj3-cli-3.1.11/debian/python3-biomaj3-cli/usr/lib/python3.12/dist-packages/biomaj_cli-3.1.11.egg-info Skipping SOURCES.txt running install_scripts creating /build/reproducible-path/biomaj3-cli-3.1.11/debian/python3-biomaj3-cli/usr/bin copying build/scripts-3.12/biomaj-cli.py -> /build/reproducible-path/biomaj3-cli-3.1.11/debian/python3-biomaj3-cli/usr/bin changing mode of /build/reproducible-path/biomaj3-cli-3.1.11/debian/python3-biomaj3-cli/usr/bin/biomaj-cli.py to 755 I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/biomaj3-cli-3.1.11/debian/python3-biomaj3-cli /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:270: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:270: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:79: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running egg_info writing biomaj_cli.egg-info/PKG-INFO writing dependency_links to biomaj_cli.egg-info/dependency_links.txt writing requirements to biomaj_cli.egg-info/requires.txt writing top-level names to biomaj_cli.egg-info/top_level.txt reading manifest file 'biomaj_cli.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'biomaj_cli.egg-info/SOURCES.txt' running build_scripts running install_lib creating /build/reproducible-path/biomaj3-cli-3.1.11/debian/python3-biomaj3-cli/usr/lib/python3.13/dist-packages creating /build/reproducible-path/biomaj3-cli-3.1.11/debian/python3-biomaj3-cli/usr/lib/python3.13/dist-packages/biomaj_cli copying /build/reproducible-path/biomaj3-cli-3.1.11/.pybuild/cpython3_3.13_biomaj-cli/build/biomaj_cli/__init__.py -> /build/reproducible-path/biomaj3-cli-3.1.11/debian/python3-biomaj3-cli/usr/lib/python3.13/dist-packages/biomaj_cli copying /build/reproducible-path/biomaj3-cli-3.1.11/.pybuild/cpython3_3.13_biomaj-cli/build/biomaj_cli/utils.py -> /build/reproducible-path/biomaj3-cli-3.1.11/debian/python3-biomaj3-cli/usr/lib/python3.13/dist-packages/biomaj_cli byte-compiling /build/reproducible-path/biomaj3-cli-3.1.11/debian/python3-biomaj3-cli/usr/lib/python3.13/dist-packages/biomaj_cli/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/biomaj3-cli-3.1.11/debian/python3-biomaj3-cli/usr/lib/python3.13/dist-packages/biomaj_cli/utils.py to utils.cpython-313.pyc running install_egg_info Copying biomaj_cli.egg-info to /build/reproducible-path/biomaj3-cli-3.1.11/debian/python3-biomaj3-cli/usr/lib/python3.13/dist-packages/biomaj_cli-3.1.11.egg-info Skipping SOURCES.txt running install_scripts copying build/scripts-3.13/biomaj-cli.py -> /build/reproducible-path/biomaj3-cli-3.1.11/debian/python3-biomaj3-cli/usr/bin changing mode of /build/reproducible-path/biomaj3-cli-3.1.11/debian/python3-biomaj3-cli/usr/bin/biomaj-cli.py to 755 debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/biomaj3-cli-3.1.11' dh_install sed -i '1s;^;#!/usr/bin/python3\n;' debian/python3-biomaj3-cli/usr/bin/biomaj-cli.py make[1]: Leaving directory '/build/reproducible-path/biomaj3-cli-3.1.11' dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: Recommends field of package python3-biomaj3-cli: substitution variable ${python3:Recommends} used, but is not defined dpkg-gencontrol: warning: Suggests field of package python3-biomaj3-cli: substitution variable ${python3:Suggests} used, but is not defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-biomaj3-cli' in '../python3-biomaj3-cli_3.1.11-5_all.deb'. dpkg-genbuildinfo --build=binary -O../biomaj3-cli_3.1.11-5_amd64.buildinfo dpkg-genchanges --build=binary -O../biomaj3-cli_3.1.11-5_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/2994825/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/2994825/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2994825 and its subdirectories I: Current time: Sat Feb 22 15:45:57 +14 2025 I: pbuilder-time-stamp: 1740188757 + false + set +x Sat Feb 22 01:45:57 UTC 2025 I: Signing ./b2/biomaj3-cli_3.1.11-5_amd64.buildinfo as biomaj3-cli_3.1.11-5_amd64.buildinfo.asc Sat Feb 22 01:45:57 UTC 2025 I: Signed ./b2/biomaj3-cli_3.1.11-5_amd64.buildinfo as ./b2/biomaj3-cli_3.1.11-5_amd64.buildinfo.asc Sat Feb 22 01:45:57 UTC 2025 - build #2 for biomaj3-cli/unstable/amd64 on ionos1-amd64 done. Starting cleanup. All cleanup done. Sat Feb 22 01:45:57 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-SOMkCVU7, removing. /srv/reproducible-results/rbuild-debian/r-b-build.GJYO9PGR: total 100 drwxr-xr-x 2 jenkins jenkins 4096 Feb 22 01:36 b1 drwxr-xr-x 2 jenkins jenkins 4096 Feb 22 01:45 b2 -rw-r--r-- 1 jenkins jenkins 2140 Jul 6 2024 biomaj3-cli_3.1.11-5.dsc -rw------- 1 jenkins jenkins 82566 Feb 22 01:36 rbuildlog.iHjU0p0 /srv/reproducible-results/rbuild-debian/r-b-build.GJYO9PGR/b1: total 156 -rw-r--r-- 1 jenkins jenkins 13308 Feb 22 01:36 biomaj3-cli_3.1.11-5.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2140 Feb 22 01:36 biomaj3-cli_3.1.11-5.dsc -rw-r--r-- 1 jenkins jenkins 8737 Feb 22 01:36 biomaj3-cli_3.1.11-5_amd64.buildinfo -rw-r--r-- 1 jenkins jenkins 9619 Feb 22 01:36 biomaj3-cli_3.1.11-5_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1110 Feb 22 01:36 biomaj3-cli_3.1.11-5_amd64.changes -rw-r--r-- 1 jenkins jenkins 1277 Feb 22 01:36 biomaj3-cli_3.1.11-5_source.changes -rw-r--r-- 1 jenkins jenkins 79005 Feb 22 01:36 build.log -rw-r--r-- 1 jenkins jenkins 18940 Feb 22 01:36 python3-biomaj3-cli_3.1.11-5_all.deb /srv/reproducible-results/rbuild-debian/r-b-build.GJYO9PGR/b2: total 152 -rw-r--r-- 1 jenkins jenkins 13308 Feb 22 01:45 biomaj3-cli_3.1.11-5.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2140 Feb 22 01:45 biomaj3-cli_3.1.11-5.dsc -rw-r--r-- 1 jenkins jenkins 8728 Feb 22 01:45 biomaj3-cli_3.1.11-5_amd64.buildinfo -rw-r--r-- 1 jenkins jenkins 9610 Feb 22 01:45 biomaj3-cli_3.1.11-5_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1110 Feb 22 01:45 biomaj3-cli_3.1.11-5_amd64.changes -rw-r--r-- 1 jenkins jenkins 1277 Feb 22 01:45 biomaj3-cli_3.1.11-5_source.changes -rw-r--r-- 1 jenkins jenkins 80925 Feb 22 01:45 build.log -rw-r--r-- 1 jenkins jenkins 18940 Feb 22 01:45 python3-biomaj3-cli_3.1.11-5_all.deb Sat Feb 22 01:45:58 UTC 2025 I: Deleting $TMPDIR on ionos1-amd64.debian.net. Sat Feb 22 01:45:59 UTC 2025 I: biomaj3-cli_3.1.11-5_amd64.changes: Format: 1.8 Date: Sun, 07 Jul 2024 00:10:08 +0200 Source: biomaj3-cli Binary: python3-biomaj3-cli Architecture: all Version: 3.1.11-5 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Alexandre Detiste Description: python3-biomaj3-cli - BioMAJ client Changes: biomaj3-cli (3.1.11-5) unstable; urgency=medium . * Team Upload. * remove extraneous & deprecated build-dep on python3-mock Checksums-Sha1: 8f5baaad63ae4ae36d2f71965bb5a769c8d70108 8737 biomaj3-cli_3.1.11-5_amd64.buildinfo 1de0e32fd6cca34fdffca1814ea5e470a5a5cf4f 18940 python3-biomaj3-cli_3.1.11-5_all.deb Checksums-Sha256: bbba19aa913132cba83988287dfa3fc4831fd69c0d918de55718729071797955 8737 biomaj3-cli_3.1.11-5_amd64.buildinfo 42efdcce0f3c9a72fd53a189f00db8a3e212c903f5846a86424a57600b78109d 18940 python3-biomaj3-cli_3.1.11-5_all.deb Files: 6108c7e5ca85ce2dabd0abc582922aa0 8737 python optional biomaj3-cli_3.1.11-5_amd64.buildinfo b87d31a54e4c931a19f73abf2ebcac7a 18940 python optional python3-biomaj3-cli_3.1.11-5_all.deb removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/biomaj3-cli_3.1.11-5.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/biomaj3-cli_3.1.11-5.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/amd64/biomaj3-cli_3.1.11-5.build1.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/amd64/biomaj3-cli_3.1.11-5.build2.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/buildinfo/unstable/amd64/biomaj3-cli_3.1.11-5_amd64.buildinfo' removed '/var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/biomaj3-cli_3.1.11-5.diff.gz' Diff of the two buildlogs: -- --- b1/build.log 2025-02-22 01:36:00.100360154 +0000 +++ b2/build.log 2025-02-22 01:45:58.533294375 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Thu Mar 26 19:57:42 -12 2026 -I: pbuilder-time-stamp: 1774598262 +I: Current time: Sat Feb 22 15:36:03 +14 2025 +I: pbuilder-time-stamp: 1740188163 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -22,52 +22,84 @@ dpkg-source: info: unpacking biomaj3-cli_3.1.11-5.debian.tar.xz I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/2608634/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/2994825/tmp/hooks/D01_modify_environment starting +debug: Running on ionos1-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Feb 22 01:36 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/2994825/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/2994825/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='1c454e1c8f354e13825b4ab7e7235bd3' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='2608634' - PS1='# ' - PS2='> ' + INVOCATION_ID=ef712901fe3045ebaada891e60179820 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=2994825 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.GJYO9PGR/pbuilderrc_ouSi --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.GJYO9PGR/b1 --logfile b1/build.log biomaj3-cli_3.1.11-5.dsc' - SUDO_GID='111' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://213.165.73.152:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.GJYO9PGR/pbuilderrc_HiJs --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.GJYO9PGR/b2 --logfile b2/build.log biomaj3-cli_3.1.11-5.dsc' + SUDO_GID=110 + SUDO_UID=105 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://46.16.76.132:3128 I: uname -a - Linux ionos15-amd64 6.12.9+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.9-1~bpo12+1 (2025-01-19) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-31-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.128-1 (2025-02-07) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/2608634/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/2994825/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -269,7 +301,7 @@ Get: 152 http://deb.debian.org/debian unstable/main amd64 sphinx-rtd-theme-common all 3.0.2+dfsg-2 [1023 kB] Get: 153 http://deb.debian.org/debian unstable/main amd64 python3-flask-cors all 5.0.0-1 [46.3 kB] Get: 154 http://deb.debian.org/debian unstable/main amd64 python3-biomaj3-daemon all 3.0.24-3 [30.7 kB] -Fetched 50.6 MB in 2s (24.5 MB/s) +Fetched 50.6 MB in 3s (19.9 MB/s) Preconfiguring packages ... Selecting previously unselected package fonts-lato. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19775 files and directories currently installed.) @@ -773,8 +805,8 @@ Setting up tzdata (2025a-2) ... Current default time zone: 'Etc/UTC' -Local time is now: Fri Mar 27 07:58:26 UTC 2026. -Universal Time is now: Fri Mar 27 07:58:26 UTC 2026. +Local time is now: Sat Feb 22 01:39:56 UTC 2025. +Universal Time is now: Sat Feb 22 01:39:56 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... @@ -973,7 +1005,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/biomaj3-cli-3.1.11/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../biomaj3-cli_3.1.11-5_source.changes +I: user script /srv/workspace/pbuilder/2994825/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/2994825/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/biomaj3-cli-3.1.11/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../biomaj3-cli_3.1.11-5_source.changes dpkg-buildpackage: info: source package biomaj3-cli dpkg-buildpackage: info: source version 3.1.11-5 dpkg-buildpackage: info: source distribution unstable @@ -1029,8 +1065,8 @@ running build running build_py creating /build/reproducible-path/biomaj3-cli-3.1.11/.pybuild/cpython3_3.12_biomaj-cli/build/biomaj_cli -copying biomaj_cli/utils.py -> /build/reproducible-path/biomaj3-cli-3.1.11/.pybuild/cpython3_3.12_biomaj-cli/build/biomaj_cli copying biomaj_cli/__init__.py -> /build/reproducible-path/biomaj3-cli-3.1.11/.pybuild/cpython3_3.12_biomaj-cli/build/biomaj_cli +copying biomaj_cli/utils.py -> /build/reproducible-path/biomaj3-cli-3.1.11/.pybuild/cpython3_3.12_biomaj-cli/build/biomaj_cli running egg_info creating biomaj_cli.egg-info writing biomaj_cli.egg-info/PKG-INFO @@ -1054,8 +1090,8 @@ running build running build_py creating /build/reproducible-path/biomaj3-cli-3.1.11/.pybuild/cpython3_3.13_biomaj-cli/build/biomaj_cli -copying biomaj_cli/utils.py -> /build/reproducible-path/biomaj3-cli-3.1.11/.pybuild/cpython3_3.13_biomaj-cli/build/biomaj_cli copying biomaj_cli/__init__.py -> /build/reproducible-path/biomaj3-cli-3.1.11/.pybuild/cpython3_3.13_biomaj-cli/build/biomaj_cli +copying biomaj_cli/utils.py -> /build/reproducible-path/biomaj3-cli-3.1.11/.pybuild/cpython3_3.13_biomaj-cli/build/biomaj_cli running egg_info writing biomaj_cli.egg-info/PKG-INFO writing dependency_links to biomaj_cli.egg-info/dependency_links.txt @@ -1107,10 +1143,10 @@ running install_lib creating /build/reproducible-path/biomaj3-cli-3.1.11/debian/python3-biomaj3-cli/usr/lib/python3.12/dist-packages creating /build/reproducible-path/biomaj3-cli-3.1.11/debian/python3-biomaj3-cli/usr/lib/python3.12/dist-packages/biomaj_cli -copying /build/reproducible-path/biomaj3-cli-3.1.11/.pybuild/cpython3_3.12_biomaj-cli/build/biomaj_cli/utils.py -> /build/reproducible-path/biomaj3-cli-3.1.11/debian/python3-biomaj3-cli/usr/lib/python3.12/dist-packages/biomaj_cli copying /build/reproducible-path/biomaj3-cli-3.1.11/.pybuild/cpython3_3.12_biomaj-cli/build/biomaj_cli/__init__.py -> /build/reproducible-path/biomaj3-cli-3.1.11/debian/python3-biomaj3-cli/usr/lib/python3.12/dist-packages/biomaj_cli -byte-compiling /build/reproducible-path/biomaj3-cli-3.1.11/debian/python3-biomaj3-cli/usr/lib/python3.12/dist-packages/biomaj_cli/utils.py to utils.cpython-312.pyc +copying /build/reproducible-path/biomaj3-cli-3.1.11/.pybuild/cpython3_3.12_biomaj-cli/build/biomaj_cli/utils.py -> /build/reproducible-path/biomaj3-cli-3.1.11/debian/python3-biomaj3-cli/usr/lib/python3.12/dist-packages/biomaj_cli byte-compiling /build/reproducible-path/biomaj3-cli-3.1.11/debian/python3-biomaj3-cli/usr/lib/python3.12/dist-packages/biomaj_cli/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/biomaj3-cli-3.1.11/debian/python3-biomaj3-cli/usr/lib/python3.12/dist-packages/biomaj_cli/utils.py to utils.cpython-312.pyc running install_egg_info Copying biomaj_cli.egg-info to /build/reproducible-path/biomaj3-cli-3.1.11/debian/python3-biomaj3-cli/usr/lib/python3.12/dist-packages/biomaj_cli-3.1.11.egg-info Skipping SOURCES.txt @@ -1152,10 +1188,10 @@ running install_lib creating /build/reproducible-path/biomaj3-cli-3.1.11/debian/python3-biomaj3-cli/usr/lib/python3.13/dist-packages creating /build/reproducible-path/biomaj3-cli-3.1.11/debian/python3-biomaj3-cli/usr/lib/python3.13/dist-packages/biomaj_cli -copying /build/reproducible-path/biomaj3-cli-3.1.11/.pybuild/cpython3_3.13_biomaj-cli/build/biomaj_cli/utils.py -> /build/reproducible-path/biomaj3-cli-3.1.11/debian/python3-biomaj3-cli/usr/lib/python3.13/dist-packages/biomaj_cli copying /build/reproducible-path/biomaj3-cli-3.1.11/.pybuild/cpython3_3.13_biomaj-cli/build/biomaj_cli/__init__.py -> /build/reproducible-path/biomaj3-cli-3.1.11/debian/python3-biomaj3-cli/usr/lib/python3.13/dist-packages/biomaj_cli -byte-compiling /build/reproducible-path/biomaj3-cli-3.1.11/debian/python3-biomaj3-cli/usr/lib/python3.13/dist-packages/biomaj_cli/utils.py to utils.cpython-313.pyc +copying /build/reproducible-path/biomaj3-cli-3.1.11/.pybuild/cpython3_3.13_biomaj-cli/build/biomaj_cli/utils.py -> /build/reproducible-path/biomaj3-cli-3.1.11/debian/python3-biomaj3-cli/usr/lib/python3.13/dist-packages/biomaj_cli byte-compiling /build/reproducible-path/biomaj3-cli-3.1.11/debian/python3-biomaj3-cli/usr/lib/python3.13/dist-packages/biomaj_cli/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/biomaj3-cli-3.1.11/debian/python3-biomaj3-cli/usr/lib/python3.13/dist-packages/biomaj_cli/utils.py to utils.cpython-313.pyc running install_egg_info Copying biomaj_cli.egg-info to /build/reproducible-path/biomaj3-cli-3.1.11/debian/python3-biomaj3-cli/usr/lib/python3.13/dist-packages/biomaj_cli-3.1.11.egg-info Skipping SOURCES.txt @@ -1191,12 +1227,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/2994825/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/2994825/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/2608634 and its subdirectories -I: Current time: Thu Mar 26 19:58:59 -12 2026 -I: pbuilder-time-stamp: 1774598339 +I: removing directory /srv/workspace/pbuilder/2994825 and its subdirectories +I: Current time: Sat Feb 22 15:45:57 +14 2025 +I: pbuilder-time-stamp: 1740188757 Compressing the 2nd log... /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/biomaj3-cli_3.1.11-5.diff: 74.7% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/biomaj3-cli_3.1.11-5.diff.gz b2/build.log: 83.2% -- replaced with stdout Compressing the 1st log... b1/build.log: 83.7% -- replaced with stdout Sat Feb 22 01:46:00 UTC 2025 I: diffoscope 288 will be used to compare the two builds: ++ date -u +%s + DIFFOSCOPE_STAMP=/var/log/reproducible-builds/diffoscope_stamp_biomaj3-cli_unstable_amd64_1740188760 + touch /var/log/reproducible-builds/diffoscope_stamp_biomaj3-cli_unstable_amd64_1740188760 + RESULT=0 + systemd-run '--description=diffoscope on biomaj3-cli/3.1.11-5 in unstable/amd64' --slice=rb-build-diffoscope.slice -u rb-diffoscope-amd64_4-45709 '--property=SuccessExitStatus=1 124' --user --send-sighup --pipe --wait -E TMPDIR timeout 155m nice schroot --directory /srv/reproducible-results/rbuild-debian/r-b-build.GJYO9PGR --run-session -c jenkins-reproducible-unstable-diffoscope-df27f41c-0aa6-4f70-a51b-063692d07d02 -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian/r-b-build.GJYO9PGR/dbd-tmp-YJbHvNP ; timeout 150m diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.GJYO9PGR/biomaj3-cli_3.1.11-5.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.GJYO9PGR/biomaj3-cli_3.1.11-5.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.GJYO9PGR/biomaj3-cli_3.1.11-5.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.GJYO9PGR/b1/biomaj3-cli_3.1.11-5_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.GJYO9PGR/b2/biomaj3-cli_3.1.11-5_amd64.changes' + false + set +x Running as unit: rb-diffoscope-amd64_4-45709.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.GJYO9PGR/biomaj3-cli_3.1.11-5.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.GJYO9PGR/biomaj3-cli_3.1.11-5.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.GJYO9PGR/biomaj3-cli_3.1.11-5.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.GJYO9PGR/b1/biomaj3-cli_3.1.11-5_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.GJYO9PGR/b2/biomaj3-cli_3.1.11-5_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 225ms CPU time consumed: 226ms _ _ _ _____ _ _ | |__ (_) ___ _ __ ___ __ _ (_)___ / ___| (_) | '_ \| |/ _ \| '_ ` _ \ / _` || | |_ \ _____ / __| | | | |_) | | (_) | | | | | | (_| || |___) |_____| (__| | | |_.__/|_|\___/|_| |_| |_|\__,_|/ |____/ \___|_|_| |__/ Sat Feb 22 01:46:00 UTC 2025 I: diffoscope 288 found no differences in the changes files, and a .buildinfo file also exists. Sat Feb 22 01:46:00 UTC 2025 I: biomaj3-cli from unstable built successfully and reproducibly on amd64. INSERT 0 1 INSERT 0 1 DELETE 1 [2025-02-22 01:46:01] INFO: Starting at 2025-02-22 01:46:01.149463 [2025-02-22 01:46:01] INFO: Generating the pages of 1 package(s) [2025-02-22 01:46:01] CRITICAL: https://tests.reproducible-builds.org/debian/unstable/amd64/biomaj3-cli didn't produce a buildlog, even though it has been built. [2025-02-22 01:46:01] INFO: Finished at 2025-02-22 01:46:01.639533, took: 0:00:00.490080 Sat Feb 22 01:46:01 UTC 2025 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/unstable/amd64/biomaj3-cli.html Sat Feb 22 01:46:01 UTC 2025 I: Submitting .buildinfo files to external archives: Sat Feb 22 01:46:01 UTC 2025 I: Submitting 12K b1/biomaj3-cli_3.1.11-5_amd64.buildinfo.asc Rejecting submission: Could not determine GPG uid Sat Feb 22 01:46:02 UTC 2025 I: Submitting 12K b2/biomaj3-cli_3.1.11-5_amd64.buildinfo.asc https://buildinfo.debian.net/efb86c972e9570b60b52cb18e77a48a92bd3af10/biomaj3-cli_3.1.11-5_all Sat Feb 22 01:46:03 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sat Feb 22 01:46:03 UTC 2025 I: Done submitting .buildinfo files. Sat Feb 22 01:46:03 UTC 2025 I: Removing signed biomaj3-cli_3.1.11-5_amd64.buildinfo.asc files: removed './b1/biomaj3-cli_3.1.11-5_amd64.buildinfo.asc' removed './b2/biomaj3-cli_3.1.11-5_amd64.buildinfo.asc' 1740188763 amd64 unstable biomaj3-cli Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/biomaj3-cli_3.1.11-5.rbuild.log: 81.7% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/biomaj3-cli_3.1.11-5.rbuild.log.gz [2025-02-22 01:46:03] INFO: Starting at 2025-02-22 01:46:03.946965 [2025-02-22 01:46:04] INFO: Generating the pages of 1 package(s) [2025-02-22 01:46:04] INFO: Finished at 2025-02-22 01:46:04.349575, took: 0:00:00.402618 All cleanup done. Sat Feb 22 01:46:04 UTC 2025 - total duration: 0h 11m 25s. Sat Feb 22 01:46:04 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-6nwdcOrw, removing. Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 11min 29.226s CPU time consumed: 6.974s