Running as unit: rb-build-amd64_4-47405.service ==================================================================================== Mon Mar 10 22:50:25 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_amd64_4) on jenkins, called using "ionos15-amd64 ionos1-amd64" as arguments. Mon Mar 10 22:50:25 UTC 2025 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-e24HkFnp" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Mon Mar 10 22:50:25 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos15-amd64.debian.net is marked as down. Mon Mar 10 22:50:25 UTC 2025 - checking via ssh if ionos15-amd64.debian.net is up. removed '/tmp/read-only-fs-test-0Ex5Ly' Mon Mar 10 22:50:26 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos1-amd64.debian.net is marked as down. Mon Mar 10 22:50:26 UTC 2025 - checking via ssh if ionos1-amd64.debian.net is up. removed '/tmp/read-only-fs-test-9L53X7' ok, let's check if diamond-aligner is building anywhere yet… ok, diamond-aligner is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of diamond-aligner in unstable on amd64 on jenkins now. 1st build will be done on ionos15-amd64.debian.net. 2nd build will be done on ionos1-amd64.debian.net. ============================================================================= Mon Mar 10 22:50:45 UTC 2025 I: starting to build diamond-aligner/unstable/amd64 on jenkins on '2025-03-10 22:50' Mon Mar 10 22:50:45 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_4/47405/console.log 1741647045 amd64 unstable diamond-aligner Mon Mar 10 22:50:45 UTC 2025 I: Downloading source for unstable/diamond-aligner=2.1.11-2 --2025-03-10 22:50:45-- http://deb.debian.org/debian/pool/main/d/diamond-aligner/diamond-aligner_2.1.11-2.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2373 (2.3K) [text/prs.lines.tag] Saving to: ‘diamond-aligner_2.1.11-2.dsc’ 0K .. 100% 354M=0s 2025-03-10 22:50:45 (354 MB/s) - ‘diamond-aligner_2.1.11-2.dsc’ saved [2373/2373] --2025-03-10 22:50:45-- http://deb.debian.org/debian/pool/main/d/diamond-aligner/diamond-aligner_2.1.11-2.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2373 (2.3K) [text/prs.lines.tag] Saving to: ‘diamond-aligner_2.1.11-2.dsc’ 0K .. 100% 354M=0s 2025-03-10 22:50:45 (354 MB/s) - ‘diamond-aligner_2.1.11-2.dsc’ saved [2373/2373] Mon Mar 10 22:50:45 UTC 2025 I: diamond-aligner_2.1.11-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: diamond-aligner Binary: diamond-aligner Architecture: any-amd64 arm64 ppc64el s390x ia64 ppc64 riscv64 sparc64 loong64 Version: 2.1.11-2 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Étienne Mollier Homepage: https://github.com/bbuchfink/diamond Standards-Version: 4.7.2 Vcs-Browser: https://salsa.debian.org/med-team/diamond-aligner Vcs-Git: https://salsa.debian.org/med-team/diamond-aligner.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), cmake, zlib1g-dev, debhelper Package-List: diamond-aligner deb science optional arch=any-amd64,arm64,ppc64el,s390x,ia64,ppc64,riscv64,sparc64,loong64 Checksums-Sha1: 1e96180a43107a2cdfa3d5e902e871e9efa68187 4299560 diamond-aligner_2.1.11.orig.tar.xz 881ccbd0d81af2a8d33f4aa2816a956409f713a7 138004 diamond-aligner_2.1.11-2.debian.tar.xz Checksums-Sha256: 02959fe5a7135d6cad22d5253a7547a7b76b583ae6c4d8b1cfc1cb202898a55a 4299560 diamond-aligner_2.1.11.orig.tar.xz 28fbdffd1badf92cf3563400408b957635b84d7ae8af33894180341cfa0c5a6f 138004 diamond-aligner_2.1.11-2.debian.tar.xz Files: b8c3c9bed2fcd5599c3ac5527ee76fb1 4299560 diamond-aligner_2.1.11.orig.tar.xz aaffc68e4846e6fc4bc27be1fe31175c 138004 diamond-aligner_2.1.11-2.debian.tar.xz Dgit: b201d1044e17f4656801e34dd9b7682b848f00e1 debian archive/debian/2.1.11-2 https://git.dgit.debian.org/diamond-aligner -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmfNZSsUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdrfUQ//dMzDgdsnT8LNELaVZj8c9DxEb8H+ zCuqtepII3h+VtKqzuif17yqdqJmwnJP0v4dFIDOilg62vQm8/RBHyL/CqgQwFnj UxAyoxgVEXcJs6m1zqEqVYuMTyp09nBzCNj4rN/Bm2D6qdOVgdkmw2iJzYzUsr3/ 0ixm67Uh5EkytcF43DEhCCRgmHeHyNE7aoSVTN4A8i4sZQhq/AgDEmAjjWod/1O/ wDeoDD7ksUNcTStqz2zg8A56ujoEaiowtl+c6vMpjD0rYy8avTsVesxLBhX6iyD9 NaA5hgJb1Bh+wD5pjaMkf8Suc1QiJUfPnYJNq0GYj0GiH4EvWSleIQnwS7dtiHY2 m10uBtpTw2edWISn7RwB1fAbmPMHNkkuXvgloaACM45nLA0WB2h8RuR8Sex+ejiq 7fxaIYVtJP6UHAbwA0dd+OCrU83VcVWnrzb5au52RTZw34M82DwsdY7unrWBHqVk lY1un6CgM3xiSGy/ZVgHxlXaP/ma8QhAq0Dy/JIdIikK7ufoqKzUZ9hIxnjFF1f1 5JEZGr6XhL87Fi2L1OCQB+zskgSaClDfQO6xX9HWCsAnScCWxRkNK3Ma7u/BHSsG lDLeOWo0K6Kn4CkMZLc4vsvr6KRVYB5Ct4xtM7CCbQ2UhZHXBpabp/8cVFvrIhJm 2WPrWpr1/03Ky4M= =zB9T -----END PGP SIGNATURE----- Mon Mar 10 22:50:45 UTC 2025 I: Checking whether the package is not for us Mon Mar 10 22:50:45 UTC 2025 I: Starting 1st build on remote node ionos15-amd64.debian.net. Mon Mar 10 22:50:45 UTC 2025 I: Preparing to do remote build '1' on ionos15-amd64.debian.net. Mon Mar 10 22:50:45 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos15-amd64.debian.net is marked as down. Mon Mar 10 22:50:45 UTC 2025 - checking via ssh if ionos15-amd64.debian.net is up. removed '/tmp/read-only-fs-test-CTzPL4' ==================================================================================== Mon Apr 13 05:13:43 UTC 2026 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos15-amd64, called using "1 diamond-aligner unstable /srv/reproducible-results/rbuild-debian/r-b-build.PH0nphoP 2.1.11-2" as arguments. Mon Apr 13 05:13:43 UTC 2026 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-XSq3aSV7" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Mon Apr 13 05:13:43 UTC 2026 I: Downloading source for unstable/diamond-aligner=2.1.11-2 Reading package lists... NOTICE: 'diamond-aligner' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/diamond-aligner.git Please use: git clone https://salsa.debian.org/med-team/diamond-aligner.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 4440 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main diamond-aligner 2.1.11-2 (dsc) [2373 B] Get:2 http://deb.debian.org/debian unstable/main diamond-aligner 2.1.11-2 (tar) [4300 kB] Get:3 http://deb.debian.org/debian unstable/main diamond-aligner 2.1.11-2 (diff) [138 kB] Fetched 4440 kB in 0s (24.7 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'diamond-aligner' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/diamond-aligner.git Please use: git clone https://salsa.debian.org/med-team/diamond-aligner.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 4440 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main diamond-aligner 2.1.11-2 (dsc) [2373 B] Get:2 http://deb.debian.org/debian unstable/main diamond-aligner 2.1.11-2 (tar) [4300 kB] Get:3 http://deb.debian.org/debian unstable/main diamond-aligner 2.1.11-2 (diff) [138 kB] Fetched 4440 kB in 0s (24.7 MB/s) Download complete and in download only mode ============================================================================= Building diamond-aligner in unstable on amd64 on ionos15-amd64 now. Date: Mon Apr 13 05:13:44 UTC 2026 Date UTC: Mon Apr 13 05:13:44 UTC 2026 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Sun Apr 12 17:13:44 -12 2026 I: pbuilder-time-stamp: 1776057224 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [diamond-aligner_2.1.11-2.dsc] I: copying [./diamond-aligner_2.1.11.orig.tar.xz] I: copying [./diamond-aligner_2.1.11-2.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./diamond-aligner_2.1.11-2.dsc: unsupported subcommand dpkg-source: info: extracting diamond-aligner in diamond-aligner-2.1.11 dpkg-source: info: unpacking diamond-aligner_2.1.11.orig.tar.xz dpkg-source: info: unpacking diamond-aligner_2.1.11-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying typo.patch dpkg-source: info: applying fix_missing_cstring_riscv64.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1134213/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='59c8965be22f436d8ef9a7f48483df9a' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1134213' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.PH0nphoP/pbuilderrc_oPKV --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.PH0nphoP/b1 --logfile b1/build.log diamond-aligner_2.1.11-2.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos15-amd64 6.12.12+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.12-1~bpo12+1 (2025-02-23) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Mar 4 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1134213/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, zlib1g-dev, debhelper dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19783 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on debhelper; however: Package debhelper is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libbrotli1{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgnutls30t64{a} libgssapi-krb5-2{a} libicu72{a} libidn2-0{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap2{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libp11-kit0{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libtasn1-6{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libxml2{a} m4{a} man-db{a} po-debconf{a} procps{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 61 newly installed, 0 to remove and 0 not upgraded. Need to get 41.6 MB of archives. After unpacking 150 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 libproc2-0 amd64 2:4.0.4-7 [64.9 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 procps amd64 2:4.0.4-7 [878 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.1-1 [243 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-7 [1185 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40.4-5 [92.4 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-7 [294 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3 [493 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.17-3 [862 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.1-1 [770 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 cmake-data all 3.31.6-1 [2268 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 libicu72 amd64 72.1-6 [9421 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b2 [699 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 libarchive13t64 amd64 3.7.4-1.1 [349 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.21.3-4 [32.8 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.2-1 [24.0 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.21.3-4 [80.9 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get: 27 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.21.3-4 [326 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.21.3-4 [138 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 libunistring5 amd64 1.3-1 [476 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 libidn2-0 amd64 2.3.8-1 [109 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-9 [19.8 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-9 [57.5 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 libldap2 amd64 2.6.9+dfsg-1 [192 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 libnghttp3-9 amd64 1.8.0-1 [67.7 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 libffi8 amd64 3.4.7-1 [23.9 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 libgnutls30t64 amd64 3.8.9-2 [1464 kB] Get: 41 http://deb.debian.org/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get: 42 http://deb.debian.org/debian unstable/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 libcurl4t64 amd64 8.12.1-3 [369 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.6.4-1 [106 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 libjsoncpp26 amd64 1.9.6-3 [81.7 kB] Get: 46 http://deb.debian.org/debian unstable/main amd64 librhash1 amd64 1.4.5-1 [132 kB] Get: 47 http://deb.debian.org/debian unstable/main amd64 libuv1t64 amd64 1.50.0-2 [154 kB] Get: 48 http://deb.debian.org/debian unstable/main amd64 cmake amd64 3.31.6-1 [12.0 MB] Get: 49 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.24.1 [90.9 kB] Get: 50 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-4 [539 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 52 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 53 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 54 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 55 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 56 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 57 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.1-1 [1680 kB] Get: 58 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 59 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 60 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.24.1 [920 kB] Get: 61 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Fetched 41.6 MB in 4s (9616 kB/s) Preconfiguring packages ... Selecting previously unselected package libproc2-0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19783 files and directories currently installed.) Preparing to unpack .../00-libproc2-0_2%3a4.0.4-7_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.4-7) ... Selecting previously unselected package procps. Preparing to unpack .../01-procps_2%3a4.0.4-7_amd64.deb ... Unpacking procps (2:4.0.4-7) ... Selecting previously unselected package sensible-utils. 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/diamond-aligner-2.1.11/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../diamond-aligner_2.1.11-2_source.changes dpkg-buildpackage: info: source package diamond-aligner dpkg-buildpackage: info: source version 2.1.11-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/diamond-aligner-2.1.11' dh_auto_configure -- -DCMAKE_BUILD_TYPE=Release cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DCMAKE_BUILD_TYPE=Release .. CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. 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CMakeFiles/arch_generic.dir/build.make CMakeFiles/arch_generic.dir/build make[3]: Entering directory '/build/reproducible-path/diamond-aligner-2.1.11/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/diamond-aligner-2.1.11/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/diamond-aligner-2.1.11/obj-x86_64-linux-gnu' make -f CMakeFiles/arch_avx2.dir/build.make CMakeFiles/arch_avx2.dir/build make[3]: Entering directory '/build/reproducible-path/diamond-aligner-2.1.11/obj-x86_64-linux-gnu' [ 2%] Building CXX object CMakeFiles/arch_sse4_1.dir/src/dp/scan_diags.cpp.o [ 2%] Building CXX object CMakeFiles/arch_sse4_1.dir/src/search/stage1_2.cpp.o [ 2%] Building CXX object CMakeFiles/arch_sse4_1.dir/src/tools/benchmark.cpp.o [ 5%] Building CXX object CMakeFiles/arch_generic.dir/src/dp/swipe/banded_3frame_swipe.cpp.o [ 5%] Building CXX object CMakeFiles/arch_sse4_1.dir/src/masking/tantan.cpp.o [ 5%] Building CXX object 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-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -DDISPATCH_ARCH=ARCH_AVX2 -DARCH_ID=2 -mssse3 -mpopcnt -msse4.1 -msse4.2 -mavx -mavx2 -DEigen=Eigen_AVX2 -MD -MT CMakeFiles/arch_avx2.dir/src/search/stage1_2.cpp.o -MF CMakeFiles/arch_avx2.dir/src/search/stage1_2.cpp.o.d -o CMakeFiles/arch_avx2.dir/src/search/stage1_2.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.11/src/search/stage1_2.cpp /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_AVX2 -DWITH_SSE4_1 -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.11/src -I/build/reproducible-path/diamond-aligner-2.1.11/src/lib -g -O2 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CMakeFiles/arch_avx2.dir/src/dp/swipe/swipe_wrapper.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/swipe_wrapper.cpp /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_AVX2 -DWITH_SSE4_1 -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.11/src -I/build/reproducible-path/diamond-aligner-2.1.11/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -DDISPATCH_ARCH=ARCH_AVX2 -DARCH_ID=2 -mssse3 -mpopcnt -msse4.1 -msse4.2 -mavx -mavx2 -DEigen=Eigen_AVX2 -MD -MT CMakeFiles/arch_avx2.dir/src/masking/tantan.cpp.o -MF CMakeFiles/arch_avx2.dir/src/masking/tantan.cpp.o.d -o CMakeFiles/arch_avx2.dir/src/masking/tantan.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.11/src/masking/tantan.cpp /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_AVX2 -DWITH_SSE4_1 -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.11/src -I/build/reproducible-path/diamond-aligner-2.1.11/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -DDISPATCH_ARCH=ARCH_AVX2 -DARCH_ID=2 -mssse3 -mpopcnt -msse4.1 -msse4.2 -mavx -mavx2 -DEigen=Eigen_AVX2 -MD -MT CMakeFiles/arch_avx2.dir/src/dp/ungapped_simd.cpp.o -MF 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-mavx2 -DEigen=Eigen_AVX2 -MD -MT CMakeFiles/arch_avx2.dir/src/dp/swipe/anchored_wrapper.cpp.o -MF CMakeFiles/arch_avx2.dir/src/dp/swipe/anchored_wrapper.cpp.o.d -o CMakeFiles/arch_avx2.dir/src/dp/swipe/anchored_wrapper.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/anchored_wrapper.cpp /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_AVX2 -DWITH_SSE4_1 -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.11/src -I/build/reproducible-path/diamond-aligner-2.1.11/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -DDISPATCH_ARCH=ARCH_AVX2 -DARCH_ID=2 -mssse3 -mpopcnt -msse4.1 -msse4.2 -mavx -mavx2 -DEigen=Eigen_AVX2 -MD -MT CMakeFiles/arch_avx2.dir/src/dp/score_profile.cpp.o -MF CMakeFiles/arch_avx2.dir/src/dp/score_profile.cpp.o.d -o CMakeFiles/arch_avx2.dir/src/dp/score_profile.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.11/src/dp/score_profile.cpp In file included from /usr/include/c++/14/list:62, from /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/swipe_wrapper.cpp:22: In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’, inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:998:21, inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:1029:20, inlined from ‘DP::Swipe::ARCH_GENERIC::Matrix::Matrix(int, int) [with Sv = int]’ at /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/full_matrix.h:66:12: /usr/include/c++/14/bits/stl_algobase.h:952:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 952 | *__first = __tmp; | ~~~~~~~~~^~~~~~~ In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’, inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:998:21, inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:1029:20, inlined from ‘DP::Swipe::ARCH_GENERIC::Matrix::Matrix(int, int) [with Sv = int]’ at /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/full_matrix.h:66:12, inlined from ‘std::__cxx11::list DP::Swipe::ARCH_GENERIC::swipe(It, It, std::atomic*, Cbs, DP::TargetVec&, DP::Params&) [with Sv = int; Cbs = DP::NoCBS; It = __gnu_cxx::__normal_iterator >; Cfg = SwipeConfig, int, DummyIdMask >]’ at /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/full_swipe.h:160:9: /usr/include/c++/14/bits/stl_algobase.h:952:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 952 | *__first = __tmp; | ~~~~~~~~~^~~~~~~ In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’, inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:998:21, inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:1029:20, inlined from ‘DP::Swipe::ARCH_GENERIC::Matrix::Matrix(int, int) [with Sv = int]’ at /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/full_matrix.h:66:12, inlined from ‘std::__cxx11::list DP::Swipe::ARCH_GENERIC::swipe(It, It, std::atomic*, Cbs, DP::TargetVec&, DP::Params&) [with Sv = int; Cbs = DP::NoCBS; It = __gnu_cxx::__normal_iterator >; Cfg = SwipeConfig, int, DummyIdMask >]’ at /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/full_swipe.h:160:9: /usr/include/c++/14/bits/stl_algobase.h:952:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 952 | *__first = __tmp; | ~~~~~~~~~^~~~~~~ In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’, inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:998:21, inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:1029:20, inlined from ‘DP::Swipe::ARCH_GENERIC::Matrix::Matrix(int, int) [with Sv = int]’ at /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/full_matrix.h:66:12, inlined from ‘std::__cxx11::list DP::Swipe::ARCH_GENERIC::swipe(It, It, std::atomic*, Cbs, DP::TargetVec&, DP::Params&) [with Sv = int; Cbs = DP::NoCBS; It = StringSetBase::ConstIterator; Cfg = SwipeConfig, int, DummyIdMask >]’ at /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/full_swipe.h:160:9: /usr/include/c++/14/bits/stl_algobase.h:952:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 952 | *__first = __tmp; | ~~~~~~~~~^~~~~~~ In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’, inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:998:21, inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:1029:20, inlined from ‘DP::Swipe::ARCH_GENERIC::Matrix::Matrix(int, int) [with Sv = int]’ at /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/full_matrix.h:66:12, inlined from ‘std::__cxx11::list DP::Swipe::ARCH_GENERIC::swipe(It, It, std::atomic*, Cbs, DP::TargetVec&, DP::Params&) [with Sv = int; Cbs = DP::NoCBS; It = StringSetBase::ConstIterator; Cfg = SwipeConfig, int, DummyIdMask >]’ at /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/full_swipe.h:160:9: /usr/include/c++/14/bits/stl_algobase.h:952:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 952 | *__first = __tmp; | ~~~~~~~~~^~~~~~~ In file included from /usr/include/c++/14/list:62, from /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/swipe_wrapper.cpp:22: In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’, inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:998:21, inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:1029:20, inlined from ‘DP::Swipe::ARCH_AVX2::Matrix::Matrix(int, int) [with Sv = int]’ at /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/full_matrix.h:66:12: /usr/include/c++/14/bits/stl_algobase.h:952:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 952 | *__first = __tmp; | ~~~~~~~~~^~~~~~~ In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’, inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:998:21, inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:1029:20, inlined from ‘DP::Swipe::ARCH_AVX2::Matrix::Matrix(int, int) [with Sv = int]’ at /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/full_matrix.h:66:12, inlined from ‘std::__cxx11::list DP::Swipe::ARCH_AVX2::swipe(It, It, std::atomic*, Cbs, DP::TargetVec&, DP::Params&) [with Sv = int; Cbs = DP::NoCBS; It = __gnu_cxx::__normal_iterator >; Cfg = SwipeConfig, int, DummyIdMask >]’ at /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/full_swipe.h:160:9: /usr/include/c++/14/bits/stl_algobase.h:952:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 952 | *__first = __tmp; | ~~~~~~~~~^~~~~~~ In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’, inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:998:21, inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:1029:20, inlined from ‘DP::Swipe::ARCH_AVX2::Matrix::Matrix(int, int) [with Sv = int]’ at /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/full_matrix.h:66:12, inlined from ‘std::__cxx11::list DP::Swipe::ARCH_AVX2::swipe(It, It, std::atomic*, Cbs, DP::TargetVec&, DP::Params&) [with Sv = int; Cbs = DP::NoCBS; It = __gnu_cxx::__normal_iterator >; Cfg = SwipeConfig, int, DummyIdMask >]’ at /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/full_swipe.h:160:9: /usr/include/c++/14/bits/stl_algobase.h:952:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 952 | *__first = __tmp; | ~~~~~~~~~^~~~~~~ In file included from /usr/include/c++/14/list:62, from /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/swipe_wrapper.cpp:22: In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’, inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:998:21, inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:1029:20, inlined from ‘DP::Swipe::ARCH_SSE4_1::Matrix::Matrix(int, int) [with Sv = int]’ at /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/full_matrix.h:66:12: /usr/include/c++/14/bits/stl_algobase.h:952:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 952 | *__first = __tmp; | ~~~~~~~~~^~~~~~~ In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’, inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:998:21, inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:1029:20, inlined from ‘DP::Swipe::ARCH_SSE4_1::Matrix::Matrix(int, int) [with Sv = int]’ at /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/full_matrix.h:66:12, inlined from ‘std::__cxx11::list DP::Swipe::ARCH_SSE4_1::swipe(It, It, std::atomic*, Cbs, DP::TargetVec&, DP::Params&) [with Sv = int; Cbs = DP::NoCBS; It = __gnu_cxx::__normal_iterator >; Cfg = SwipeConfig, int, DummyIdMask >]’ at /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/full_swipe.h:160:9: /usr/include/c++/14/bits/stl_algobase.h:952:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 952 | *__first = __tmp; | ~~~~~~~~~^~~~~~~ In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’, inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:998:21, inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:1029:20, inlined from ‘DP::Swipe::ARCH_SSE4_1::Matrix::Matrix(int, int) [with Sv = int]’ at /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/full_matrix.h:66:12, inlined from ‘std::__cxx11::list DP::Swipe::ARCH_SSE4_1::swipe(It, It, std::atomic*, Cbs, DP::TargetVec&, DP::Params&) [with Sv = int; Cbs = DP::NoCBS; It = __gnu_cxx::__normal_iterator >; Cfg = SwipeConfig, int, DummyIdMask >]’ at /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/full_swipe.h:160:9: /usr/include/c++/14/bits/stl_algobase.h:952:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 952 | *__first = __tmp; | ~~~~~~~~~^~~~~~~ In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’, inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:998:21, inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:1029:20, inlined from ‘DP::Swipe::ARCH_AVX2::Matrix::Matrix(int, int) [with Sv = int]’ at /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/full_matrix.h:66:12, inlined from ‘std::__cxx11::list DP::Swipe::ARCH_AVX2::swipe(It, It, std::atomic*, Cbs, DP::TargetVec&, DP::Params&) [with Sv = int; Cbs = DP::NoCBS; It = StringSetBase::ConstIterator; Cfg = SwipeConfig, int, DummyIdMask >]’ at /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/full_swipe.h:160:9: /usr/include/c++/14/bits/stl_algobase.h:952:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 952 | *__first = __tmp; | ~~~~~~~~~^~~~~~~ In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’, inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:998:21, inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:1029:20, inlined from ‘DP::Swipe::ARCH_AVX2::Matrix::Matrix(int, int) [with Sv = int]’ at /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/full_matrix.h:66:12, inlined from ‘std::__cxx11::list DP::Swipe::ARCH_AVX2::swipe(It, It, std::atomic*, Cbs, DP::TargetVec&, DP::Params&) [with Sv = int; Cbs = DP::NoCBS; It = StringSetBase::ConstIterator; Cfg = SwipeConfig, int, DummyIdMask >]’ at /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/full_swipe.h:160:9: /usr/include/c++/14/bits/stl_algobase.h:952:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 952 | *__first = __tmp; | ~~~~~~~~~^~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-unknown-warning-option’ may have been intended to silence earlier diagnostics In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’, inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:998:21, inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:1029:20, inlined from ‘DP::Swipe::ARCH_SSE4_1::Matrix::Matrix(int, int) [with Sv = int]’ at /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/full_matrix.h:66:12, inlined from ‘std::__cxx11::list DP::Swipe::ARCH_SSE4_1::swipe(It, It, std::atomic*, Cbs, DP::TargetVec&, DP::Params&) [with Sv = int; Cbs = DP::NoCBS; It = StringSetBase::ConstIterator; Cfg = SwipeConfig, int, DummyIdMask >]’ at /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/full_swipe.h:160:9: /usr/include/c++/14/bits/stl_algobase.h:952:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 952 | *__first = __tmp; | ~~~~~~~~~^~~~~~~ In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’, inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:998:21, inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:1029:20, inlined from ‘DP::Swipe::ARCH_SSE4_1::Matrix::Matrix(int, int) [with Sv = int]’ at /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/full_matrix.h:66:12, inlined from ‘std::__cxx11::list DP::Swipe::ARCH_SSE4_1::swipe(It, It, std::atomic*, Cbs, DP::TargetVec&, DP::Params&) [with Sv = int; Cbs = DP::NoCBS; It = StringSetBase::ConstIterator; Cfg = SwipeConfig, int, DummyIdMask >]’ at /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/full_swipe.h:160:9: /usr/include/c++/14/bits/stl_algobase.h:952:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 952 | *__first = __tmp; | ~~~~~~~~~^~~~~~~ make[3]: Leaving directory '/build/reproducible-path/diamond-aligner-2.1.11/obj-x86_64-linux-gnu' [ 14%] Built target arch_generic At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-unknown-warning-option’ may have been intended to silence earlier diagnostics make[3]: Leaving directory '/build/reproducible-path/diamond-aligner-2.1.11/obj-x86_64-linux-gnu' [ 14%] Built target arch_avx2 At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-unknown-warning-option’ may have been intended to silence earlier diagnostics make[3]: Leaving directory '/build/reproducible-path/diamond-aligner-2.1.11/obj-x86_64-linux-gnu' [ 14%] Built target arch_sse4_1 make -f CMakeFiles/diamond.dir/build.make CMakeFiles/diamond.dir/depend make[3]: Entering directory '/build/reproducible-path/diamond-aligner-2.1.11/obj-x86_64-linux-gnu' cd /build/reproducible-path/diamond-aligner-2.1.11/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/diamond-aligner-2.1.11 /build/reproducible-path/diamond-aligner-2.1.11 /build/reproducible-path/diamond-aligner-2.1.11/obj-x86_64-linux-gnu /build/reproducible-path/diamond-aligner-2.1.11/obj-x86_64-linux-gnu /build/reproducible-path/diamond-aligner-2.1.11/obj-x86_64-linux-gnu/CMakeFiles/diamond.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/diamond-aligner-2.1.11/obj-x86_64-linux-gnu' make -f CMakeFiles/diamond.dir/build.make CMakeFiles/diamond.dir/build make[3]: Entering directory '/build/reproducible-path/diamond-aligner-2.1.11/obj-x86_64-linux-gnu' [ 16%] Building CXX object CMakeFiles/diamond.dir/src/basic/config.cpp.o [ 16%] Building CXX object CMakeFiles/diamond.dir/src/data/queries.cpp.o [ 17%] Building CXX object CMakeFiles/diamond.dir/src/stats/score_matrix.cpp.o [ 17%] Building CXX object CMakeFiles/diamond.dir/src/run/main.cpp.o [ 17%] Building CXX object CMakeFiles/diamond.dir/src/util/command_line_parser.cpp.o [ 17%] Building CXX object CMakeFiles/diamond.dir/src/data/seed_histogram.cpp.o [ 18%] Building CXX object CMakeFiles/diamond.dir/src/util/util.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND 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-Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/align/extend.cpp.o -MF CMakeFiles/diamond.dir/src/align/extend.cpp.o.d -o CMakeFiles/diamond.dir/src/align/extend.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.11/src/align/extend.cpp In file included from /build/reproducible-path/diamond-aligner-2.1.11/src/output/output.h:28, from /build/reproducible-path/diamond-aligner-2.1.11/src/basic/hssp.cpp:23: /build/reproducible-path/diamond-aligner-2.1.11/src/basic/match.h: In constructor ‘Hsp::Hsp(const ApproxHsp&, Loc, Loc)’: /build/reproducible-path/diamond-aligner-2.1.11/src/basic/match.h:270:73: warning: ‘Hsp::subject_range’ will be initialized after [-Wreorder] 270 | Interval query_source_range, query_range, subject_source_range, subject_range; | ^~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.11/src/basic/match.h:270:51: warning: ‘Interval Hsp::subject_source_range’ [-Wreorder] 270 | Interval query_source_range, query_range, subject_source_range, subject_range; | ^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.11/src/basic/hssp.cpp:335:1: warning: when initialized here [-Wreorder] 335 | Hsp::Hsp(const ApproxHsp& h, Loc qlen, Loc tlen) : | ^~~ [ 46%] Building CXX object CMakeFiles/diamond.dir/src/test/test.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_AVX2 -DWITH_SSE4_1 -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.11/src -I/build/reproducible-path/diamond-aligner-2.1.11/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 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-Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/lib/alp/njn_dynprogproblim.cpp.o -MF CMakeFiles/diamond.dir/src/lib/alp/njn_dynprogproblim.cpp.o.d -o CMakeFiles/diamond.dir/src/lib/alp/njn_dynprogproblim.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.11/src/lib/alp/njn_dynprogproblim.cpp In file included from /build/reproducible-path/diamond-aligner-2.1.11/src/lib/alp/njn_dynprogproblim.hpp:39, from /build/reproducible-path/diamond-aligner-2.1.11/src/lib/alp/njn_dynprogproblim.cpp:37: /build/reproducible-path/diamond-aligner-2.1.11/src/lib/alp/njn_dynprogprob.hpp:110:37: warning: ‘virtual Njn::DynProgProb& Njn::DynProgProb::operator=(const Njn::DynProgProb&)’ was hidden [-Woverloaded-virtual=] 110 | virtual inline DynProgProb &operator= (const DynProgProb &dynProgProb_) | ^~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.11/src/lib/alp/njn_dynprogproblim.hpp:90:40: note: by ‘virtual Njn::DynProgProbLim& Njn::DynProgProbLim::operator=(const Njn::DynProgProbLim&)’ 90 | virtual inline DynProgProbLim &operator= (const DynProgProbLim &dynProgProbLim_) | ^~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.11/src/lib/alp/njn_dynprogprob.hpp:124:22: warning: ‘virtual void Njn::DynProgProb::copy(size_t, const double* const*, size_t, long int, long int, long int, long int (*)(long int, size_t), size_t, const double*)’ was hidden [-Woverloaded-virtual=] 124 | virtual void copy ( | ^~~~ /build/reproducible-path/diamond-aligner-2.1.11/src/lib/alp/njn_dynprogproblim.hpp:101:29: note: by ‘Njn::DynProgProbLim::copy’ 101 | virtual inline void copy ( | ^~~~ /build/reproducible-path/diamond-aligner-2.1.11/src/lib/alp/njn_dynprogprob.hpp:116:29: warning: ‘virtual void Njn::DynProgProb::copy(const Njn::DynProgProb&)’ was hidden [-Woverloaded-virtual=] 116 | virtual inline void copy (const DynProgProb &dynProgProb_) | ^~~~ /build/reproducible-path/diamond-aligner-2.1.11/src/lib/alp/njn_dynprogproblim.hpp:101:29: note: by ‘Njn::DynProgProbLim::copy’ 101 | virtual inline void copy ( | ^~~~ [ 58%] Building CXX object CMakeFiles/diamond.dir/src/lib/alp/njn_dynprogprobproto.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_AVX2 -DWITH_SSE4_1 -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.11/src -I/build/reproducible-path/diamond-aligner-2.1.11/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/lib/alp/njn_dynprogprobproto.cpp.o -MF 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-D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/lib/alp/sls_alp_data.cpp.o -MF CMakeFiles/diamond.dir/src/lib/alp/sls_alp_data.cpp.o.d -o CMakeFiles/diamond.dir/src/lib/alp/sls_alp_data.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.11/src/lib/alp/sls_alp_data.cpp [ 63%] Building CXX object CMakeFiles/diamond.dir/src/lib/alp/sls_alp_regression.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_AVX2 -DWITH_SSE4_1 -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.11/src -I/build/reproducible-path/diamond-aligner-2.1.11/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/lib/alp/sls_alp_regression.cpp.o -MF CMakeFiles/diamond.dir/src/lib/alp/sls_alp_regression.cpp.o.d -o CMakeFiles/diamond.dir/src/lib/alp/sls_alp_regression.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.11/src/lib/alp/sls_alp_regression.cpp [ 64%] Building CXX object CMakeFiles/diamond.dir/src/lib/alp/sls_alp_sim.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_AVX2 -DWITH_SSE4_1 -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.11/src -I/build/reproducible-path/diamond-aligner-2.1.11/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/lib/alp/sls_alp_sim.cpp.o -MF CMakeFiles/diamond.dir/src/lib/alp/sls_alp_sim.cpp.o.d -o CMakeFiles/diamond.dir/src/lib/alp/sls_alp_sim.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.11/src/lib/alp/sls_alp_sim.cpp In file included from /build/reproducible-path/diamond-aligner-2.1.11/src/lib/alp/njn_dynprogproblim.hpp:39, from /build/reproducible-path/diamond-aligner-2.1.11/src/lib/alp/njn_localmaxstat.cpp:39: /build/reproducible-path/diamond-aligner-2.1.11/src/lib/alp/njn_dynprogprob.hpp:110:37: warning: ‘virtual Njn::DynProgProb& Njn::DynProgProb::operator=(const Njn::DynProgProb&)’ was hidden [-Woverloaded-virtual=] 110 | virtual inline DynProgProb &operator= (const DynProgProb &dynProgProb_) | ^~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.11/src/lib/alp/njn_dynprogproblim.hpp:90:40: note: by ‘virtual Njn::DynProgProbLim& Njn::DynProgProbLim::operator=(const Njn::DynProgProbLim&)’ 90 | virtual inline DynProgProbLim &operator= (const DynProgProbLim &dynProgProbLim_) | ^~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.11/src/lib/alp/njn_dynprogprob.hpp:124:22: warning: ‘virtual void Njn::DynProgProb::copy(size_t, const double* const*, size_t, long int, long int, long int, long int (*)(long int, size_t), size_t, const double*)’ was hidden [-Woverloaded-virtual=] 124 | virtual void copy ( | ^~~~ /build/reproducible-path/diamond-aligner-2.1.11/src/lib/alp/njn_dynprogproblim.hpp:101:29: note: by ‘Njn::DynProgProbLim::copy’ 101 | virtual inline void copy ( | ^~~~ /build/reproducible-path/diamond-aligner-2.1.11/src/lib/alp/njn_dynprogprob.hpp:116:29: warning: ‘virtual void Njn::DynProgProb::copy(const Njn::DynProgProb&)’ was hidden [-Woverloaded-virtual=] 116 | virtual inline void copy (const DynProgProb &dynProgProb_) | ^~~~ /build/reproducible-path/diamond-aligner-2.1.11/src/lib/alp/njn_dynprogproblim.hpp:101:29: note: by ‘Njn::DynProgProbLim::copy’ 101 | virtual inline void copy ( | ^~~~ [ 64%] Building CXX object CMakeFiles/diamond.dir/src/lib/alp/sls_basic.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_AVX2 -DWITH_SSE4_1 -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.11/src -I/build/reproducible-path/diamond-aligner-2.1.11/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/lib/alp/sls_basic.cpp.o -MF CMakeFiles/diamond.dir/src/lib/alp/sls_basic.cpp.o.d -o CMakeFiles/diamond.dir/src/lib/alp/sls_basic.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.11/src/lib/alp/sls_basic.cpp [ 65%] Building CXX object CMakeFiles/diamond.dir/src/lib/alp/sls_pvalues.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_AVX2 -DWITH_SSE4_1 -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.11/src -I/build/reproducible-path/diamond-aligner-2.1.11/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/lib/alp/sls_pvalues.cpp.o -MF CMakeFiles/diamond.dir/src/lib/alp/sls_pvalues.cpp.o.d -o CMakeFiles/diamond.dir/src/lib/alp/sls_pvalues.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.11/src/lib/alp/sls_pvalues.cpp [ 65%] Building CXX object CMakeFiles/diamond.dir/src/align/global_ranking/global_ranking.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_AVX2 -DWITH_SSE4_1 -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.11/src -I/build/reproducible-path/diamond-aligner-2.1.11/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/align/global_ranking/global_ranking.cpp.o -MF CMakeFiles/diamond.dir/src/align/global_ranking/global_ranking.cpp.o.d -o CMakeFiles/diamond.dir/src/align/global_ranking/global_ranking.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.11/src/align/global_ranking/global_ranking.cpp In file included from /build/reproducible-path/diamond-aligner-2.1.11/src/lib/alp/njn_dynprogproblim.hpp:39, from /build/reproducible-path/diamond-aligner-2.1.11/src/lib/alp/njn_localmaxstatutil.cpp:39: /build/reproducible-path/diamond-aligner-2.1.11/src/lib/alp/njn_dynprogprob.hpp:110:37: warning: ‘virtual Njn::DynProgProb& Njn::DynProgProb::operator=(const Njn::DynProgProb&)’ was hidden [-Woverloaded-virtual=] 110 | virtual inline DynProgProb &operator= (const DynProgProb &dynProgProb_) | ^~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.11/src/lib/alp/njn_dynprogproblim.hpp:90:40: note: by ‘virtual Njn::DynProgProbLim& Njn::DynProgProbLim::operator=(const Njn::DynProgProbLim&)’ 90 | virtual inline DynProgProbLim &operator= (const DynProgProbLim &dynProgProbLim_) | ^~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.11/src/lib/alp/njn_dynprogprob.hpp:124:22: warning: ‘virtual void Njn::DynProgProb::copy(size_t, const double* const*, size_t, long int, long int, long int, long int (*)(long int, size_t), size_t, const double*)’ was hidden [-Woverloaded-virtual=] 124 | virtual void copy ( | ^~~~ /build/reproducible-path/diamond-aligner-2.1.11/src/lib/alp/njn_dynprogproblim.hpp:101:29: note: by ‘Njn::DynProgProbLim::copy’ 101 | virtual inline void copy ( | ^~~~ /build/reproducible-path/diamond-aligner-2.1.11/src/lib/alp/njn_dynprogprob.hpp:116:29: warning: ‘virtual void Njn::DynProgProb::copy(const Njn::DynProgProb&)’ was hidden [-Woverloaded-virtual=] 116 | virtual inline void copy (const DynProgProb &dynProgProb_) | ^~~~ [ 66%] Building CXX object CMakeFiles/diamond.dir/src/align/global_ranking/extend.cpp.o /build/reproducible-path/diamond-aligner-2.1.11/src/lib/alp/njn_dynprogproblim.hpp:101:29: note: by ‘Njn::DynProgProbLim::copy’ 101 | virtual inline void copy ( | ^~~~ /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_AVX2 -DWITH_SSE4_1 -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.11/src -I/build/reproducible-path/diamond-aligner-2.1.11/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/align/global_ranking/extend.cpp.o -MF CMakeFiles/diamond.dir/src/align/global_ranking/extend.cpp.o.d -o CMakeFiles/diamond.dir/src/align/global_ranking/extend.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.11/src/align/global_ranking/extend.cpp cc1plus: note: unrecognized command-line option ‘-Wno-unknown-warning-option’ may have been intended to silence earlier diagnostics [ 67%] Building CXX object CMakeFiles/diamond.dir/src/lib/blast/blast_seg.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_AVX2 -DWITH_SSE4_1 -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.11/src -I/build/reproducible-path/diamond-aligner-2.1.11/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG 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CMakeFiles/diamond.dir/src/tools/rocid.cpp.o -MF CMakeFiles/diamond.dir/src/tools/rocid.cpp.o.d -o CMakeFiles/diamond.dir/src/tools/rocid.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.11/src/tools/rocid.cpp [ 67%] Building CXX object CMakeFiles/diamond.dir/src/lib/blast/blast_filter.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_AVX2 -DWITH_SSE4_1 -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.11/src -I/build/reproducible-path/diamond-aligner-2.1.11/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/lib/blast/blast_filter.cpp.o -MF CMakeFiles/diamond.dir/src/lib/blast/blast_filter.cpp.o.d -o CMakeFiles/diamond.dir/src/lib/blast/blast_filter.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.11/src/lib/blast/blast_filter.cpp [ 68%] Building CXX object CMakeFiles/diamond.dir/src/lib/blast/nlm_linear_algebra.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_AVX2 -DWITH_SSE4_1 -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.11/src -I/build/reproducible-path/diamond-aligner-2.1.11/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 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-Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/stats/matrices/blosum45.cpp.o -MF CMakeFiles/diamond.dir/src/stats/matrices/blosum45.cpp.o.d -o CMakeFiles/diamond.dir/src/stats/matrices/blosum45.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.11/src/stats/matrices/blosum45.cpp [ 69%] Building CXX object CMakeFiles/diamond.dir/src/stats/matrices/blosum50.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_AVX2 -DWITH_SSE4_1 -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.11/src -I/build/reproducible-path/diamond-aligner-2.1.11/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized 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-Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/stats/matrices/blosum62.cpp.o -MF CMakeFiles/diamond.dir/src/stats/matrices/blosum62.cpp.o.d -o CMakeFiles/diamond.dir/src/stats/matrices/blosum62.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.11/src/stats/matrices/blosum62.cpp [ 70%] Building CXX object CMakeFiles/diamond.dir/src/stats/matrices/blosum80.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_AVX2 -DWITH_SSE4_1 -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.11/src -I/build/reproducible-path/diamond-aligner-2.1.11/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter 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CMakeFiles/arch_sse4_1.dir/src/masking/tantan.cpp.o CMakeFiles/arch_sse4_1.dir/src/dp/scan_diags.cpp.o CMakeFiles/arch_sse4_1.dir/src/dp/ungapped_simd.cpp.o CMakeFiles/arch_sse4_1.dir/src/dp/swipe/anchored_wrapper.cpp.o CMakeFiles/arch_sse4_1.dir/src/dp/score_profile.cpp.o CMakeFiles/arch_avx2.dir/src/dp/swipe/banded_3frame_swipe.cpp.o CMakeFiles/arch_avx2.dir/src/search/stage1_2.cpp.o CMakeFiles/arch_avx2.dir/src/tools/benchmark.cpp.o CMakeFiles/arch_avx2.dir/src/dp/swipe/swipe_wrapper.cpp.o CMakeFiles/arch_avx2.dir/src/masking/tantan.cpp.o CMakeFiles/arch_avx2.dir/src/dp/scan_diags.cpp.o CMakeFiles/arch_avx2.dir/src/dp/ungapped_simd.cpp.o CMakeFiles/arch_avx2.dir/src/dp/swipe/anchored_wrapper.cpp.o CMakeFiles/arch_avx2.dir/src/dp/score_profile.cpp.o -o diamond -lz make[3]: Leaving directory '/build/reproducible-path/diamond-aligner-2.1.11/obj-x86_64-linux-gnu' [100%] Built target diamond make[2]: Leaving directory '/build/reproducible-path/diamond-aligner-2.1.11/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/diamond-aligner-2.1.11/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/diamond-aligner-2.1.11/obj-x86_64-linux-gnu' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/diamond-aligner-2.1.11' cd debian/tests && PATH=/build/reproducible-path/diamond-aligner-2.1.11/obj-x86_64-linux-gnu:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games sh diamond-calls + mktemp -d + TESTDIR=/tmp/tmp.72ZJtdlCl4 + diamond blastp --threads 1 --db test/C.faa.diamond --query test/E.faa --out /tmp/tmp.72ZJtdlCl4/E.faa.vs.C.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.11.165 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.72ZJtdlCl4 #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/C.faa.diamond (type: Diamond database, sequences: 109, letters: 51213) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] Masking queries... [0.003s] Algorithm: Double-indexed Building query histograms... [0.01s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0.002s] Initializing temporary storage... [0.226s] Building reference histograms... [0.009s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... [0.187s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 0.961s Reported 77 pairwise alignments, 77 HSPs. 72 queries aligned. + diamond blastp --threads 1 --db test/E.faa.diamond --query test/C.faa --out /tmp/tmp.72ZJtdlCl4/C.faa.vs.E.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.11.165 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.72ZJtdlCl4 #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/E.faa.diamond (type: Diamond database, sequences: 72, letters: 54509) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] Masking queries... [0.003s] Algorithm: Double-indexed Building query histograms... [0.009s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0.003s] Initializing temporary storage... [0.069s] Building reference histograms... [0.01s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... [0.121s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 0.772s Reported 41 pairwise alignments, 41 HSPs. 15 queries aligned. + diamond blastp --threads 1 --db test/C.faa.diamond --query test/L.faa --out /tmp/tmp.72ZJtdlCl4/L.faa.vs.C.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.11.165 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.72ZJtdlCl4 #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/C.faa.diamond (type: Diamond database, sequences: 109, letters: 51213) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] Masking queries... [0.001s] Algorithm: Double-indexed Building query histograms... [0.005s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0.003s] Initializing temporary storage... [0s] Building reference histograms... [0.009s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... [0.045s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 0.607s Reported 64 pairwise alignments, 64 HSPs. 33 queries aligned. + diamond blastp --threads 1 --db test/L.faa.diamond --query test/C.faa --out /tmp/tmp.72ZJtdlCl4/C.faa.vs.L.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.11.165 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.72ZJtdlCl4 #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/L.faa.diamond (type: Diamond database, sequences: 40, letters: 26652) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] Masking queries... [0.003s] Algorithm: Double-indexed Building query histograms... [0.009s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0.001s] Initializing temporary storage... [0s] Building reference histograms... [0.005s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... [0.087s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 0.52s Reported 133 pairwise alignments, 133 HSPs. 109 queries aligned. + diamond blastp --threads 1 --db test/C.faa.diamond --query test/M.faa --out /tmp/tmp.72ZJtdlCl4/M.faa.vs.C.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.11.165 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.72ZJtdlCl4 #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/C.faa.diamond (type: Diamond database, sequences: 109, letters: 51213) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] Masking queries... [0.001s] Algorithm: Double-indexed Building query histograms... [0.005s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0.002s] Initializing temporary storage... [0s] Building reference histograms... [0.009s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... [0.055s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 0.499s Reported 62 pairwise alignments, 62 HSPs. 33 queries aligned. + diamond blastp --threads 1 --db test/M.faa.diamond --query test/C.faa --out /tmp/tmp.72ZJtdlCl4/C.faa.vs.M.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.11.165 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.72ZJtdlCl4 #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/M.faa.diamond (type: Diamond database, sequences: 40, letters: 26963) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] Masking queries... [0.003s] Algorithm: Double-indexed Building query histograms... [0.009s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0.001s] Initializing temporary storage... [0s] Building reference histograms... [0.005s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... [0.101s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 0.545s Reported 131 pairwise alignments, 131 HSPs. 109 queries aligned. + diamond blastp --ignore-warnings --threads 1 --db test/C.faa.diamond --query test/C2.faa --out /tmp/tmp.72ZJtdlCl4/C2.faa.vs.C.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.11.165 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.72ZJtdlCl4 #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/C.faa.diamond (type: Diamond database, sequences: 109, letters: 51213) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] Masking queries... [0s] Algorithm: Double-indexed Building query histograms... [0s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0.003s] Initializing temporary storage... [0.054s] Building reference histograms... [0.009s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... [0.092s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 0.582s Reported 1 pairwise alignments, 1 HSPs. 1 queries aligned. + diamond blastp --threads 1 --db test/C2.faa.diamond --query test/C.faa --out /tmp/tmp.72ZJtdlCl4/C.faa.vs.C2.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.11.165 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.72ZJtdlCl4 #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/C2.faa.diamond (type: Diamond database, sequences: 2, letters: 726) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] Masking queries... [0.003s] Algorithm: Double-indexed Building query histograms... [0.009s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0s] Initializing temporary storage... [0.158s] Building reference histograms... [0s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... [0.041s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 0.704s Reported 1 pairwise alignments, 1 HSPs. 1 queries aligned. + diamond blastp --threads 1 --db test/E.faa.diamond --query test/L.faa --out /tmp/tmp.72ZJtdlCl4/L.faa.vs.E.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.11.165 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.72ZJtdlCl4 #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/E.faa.diamond (type: Diamond database, sequences: 72, letters: 54509) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] Masking queries... [0.001s] Algorithm: Double-indexed Building query histograms... [0.005s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0.003s] Initializing temporary storage... [0.233s] Building reference histograms... [0.01s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... [0.122s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0.085s] Closing the database... [0s] Cleaning up... [0s] Total time = 0.908s Reported 489 pairwise alignments, 489 HSPs. 32 queries aligned. + diamond blastp --threads 1 --db test/L.faa.diamond --query test/E.faa --out /tmp/tmp.72ZJtdlCl4/E.faa.vs.L.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.11.165 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.72ZJtdlCl4 #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/L.faa.diamond (type: Diamond database, sequences: 40, letters: 26652) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] Masking queries... [0.003s] Algorithm: Double-indexed Building query histograms... [0.01s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0.001s] Initializing temporary storage... [0.072s] Building reference histograms... [0.005s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0.001s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... [0.243s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0.105s] Closing the database... [0s] Cleaning up... [0s] Total time = 0.918s Reported 1173 pairwise alignments, 1173 HSPs. 72 queries aligned. + diamond blastp --threads 1 --db test/E.faa.diamond --query test/M.faa --out /tmp/tmp.72ZJtdlCl4/M.faa.vs.E.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.11.165 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.72ZJtdlCl4 #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/E.faa.diamond (type: Diamond database, sequences: 72, letters: 54509) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] Masking queries... [0.001s] Algorithm: Double-indexed Building query histograms... [0.005s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0.003s] Initializing temporary storage... [0.179s] Building reference histograms... [0.01s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... [0.124s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 0.803s Reported 489 pairwise alignments, 489 HSPs. 32 queries aligned. + diamond blastp --threads 1 --db test/M.faa.diamond --query test/E.faa --out /tmp/tmp.72ZJtdlCl4/E.faa.vs.M.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.11.165 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.72ZJtdlCl4 #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/M.faa.diamond (type: Diamond database, sequences: 40, letters: 26963) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] Masking queries... [0.003s] Algorithm: Double-indexed Building query histograms... [0.01s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0.001s] Initializing temporary storage... [0.001s] Building reference histograms... [0.005s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... [0.266s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 0.746s Reported 1173 pairwise alignments, 1173 HSPs. 72 queries aligned. + diamond blastp --ignore-warnings --threads 1 --db test/E.faa.diamond --query test/C2.faa --out /tmp/tmp.72ZJtdlCl4/C2.faa.vs.E.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.11.165 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.72ZJtdlCl4 #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/E.faa.diamond (type: Diamond database, sequences: 72, letters: 54509) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] Masking queries... [0s] Algorithm: Double-indexed Building query histograms... [0s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0.003s] Initializing temporary storage... [0.002s] Building reference histograms... [0.01s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.003s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.003s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... [0.003s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 0.367s Reported 1 pairwise alignments, 1 HSPs. 1 queries aligned. + diamond blastp --threads 1 --db test/C2.faa.diamond --query test/E.faa --out /tmp/tmp.72ZJtdlCl4/E.faa.vs.C2.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.11.165 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.72ZJtdlCl4 #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/C2.faa.diamond (type: Diamond database, sequences: 2, letters: 726) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] Masking queries... [0.003s] Algorithm: Double-indexed Building query histograms... [0.01s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0s] Initializing temporary storage... [0s] Building reference histograms... [0s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... [0.081s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 0.442s Reported 1 pairwise alignments, 1 HSPs. 1 queries aligned. + diamond blastp --threads 1 --db test/L.faa.diamond --query test/M.faa --out /tmp/tmp.72ZJtdlCl4/M.faa.vs.L.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.11.165 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.72ZJtdlCl4 #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/L.faa.diamond (type: Diamond database, sequences: 40, letters: 26652) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] Masking queries... [0.001s] Algorithm: Double-indexed Building query histograms... [0.005s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0.001s] Initializing temporary storage... [0s] Building reference histograms... [0.005s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... [0.095s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 0.603s Reported 390 pairwise alignments, 390 HSPs. 39 queries aligned. + diamond blastp --threads 1 --db test/M.faa.diamond --query test/L.faa --out /tmp/tmp.72ZJtdlCl4/L.faa.vs.M.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.11.165 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.72ZJtdlCl4 #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/M.faa.diamond (type: Diamond database, sequences: 40, letters: 26963) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] Masking queries... [0.001s] Algorithm: Double-indexed Building query histograms... [0.005s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0.001s] Initializing temporary storage... [0.001s] Building reference histograms... [0.005s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... [0.16s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 0.674s Reported 390 pairwise alignments, 390 HSPs. 40 queries aligned. + diamond blastp --ignore-warnings --threads 1 --db test/L.faa.diamond --query test/C2.faa --out /tmp/tmp.72ZJtdlCl4/C2.faa.vs.L.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.11.165 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.72ZJtdlCl4 #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/L.faa.diamond (type: Diamond database, sequences: 40, letters: 26652) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] Masking queries... [0s] Algorithm: Double-indexed Building query histograms... [0s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0.001s] Initializing temporary storage... [0.001s] Building reference histograms... [0.005s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... [0.004s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 0.266s Reported 1 pairwise alignments, 1 HSPs. 1 queries aligned. + diamond blastp --threads 1 --db test/C2.faa.diamond --query test/L.faa --out /tmp/tmp.72ZJtdlCl4/L.faa.vs.C2.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.11.165 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.72ZJtdlCl4 #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/C2.faa.diamond (type: Diamond database, sequences: 2, letters: 726) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0.002s] Loading query sequences... [0s] Masking queries... [0.001s] Algorithm: Double-indexed Building query histograms... [0.005s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0s] Initializing temporary storage... [0.001s] Building reference histograms... [0s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... [0.002s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 0.263s Reported 1 pairwise alignments, 1 HSPs. 1 queries aligned. + diamond blastp --ignore-warnings --threads 1 --db test/M.faa.diamond --query test/C2.faa --out /tmp/tmp.72ZJtdlCl4/C2.faa.vs.M.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.11.165 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.72ZJtdlCl4 #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/M.faa.diamond (type: Diamond database, sequences: 40, letters: 26963) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] Masking queries... [0s] Algorithm: Double-indexed Building query histograms... [0s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0.001s] Initializing temporary storage... [0s] Building reference histograms... [0.005s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... [0.004s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 0.261s Reported 1 pairwise alignments, 1 HSPs. 1 queries aligned. + diamond blastp --threads 1 --db test/C2.faa.diamond --query test/M.faa --out /tmp/tmp.72ZJtdlCl4/M.faa.vs.C2.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.11.165 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.72ZJtdlCl4 #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/C2.faa.diamond (type: Diamond database, sequences: 2, letters: 726) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] Masking queries... [0.001s] Algorithm: Double-indexed Building query histograms... [0.005s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0s] Initializing temporary storage... [0s] Building reference histograms... [0s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... [0.002s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 0.255s Reported 1 pairwise alignments, 1 HSPs. 1 queries aligned. + rm -rf /tmp/tmp.72ZJtdlCl4 make[1]: Leaving directory '/build/reproducible-path/diamond-aligner-2.1.11' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/diamond-aligner/ cd obj-x86_64-linux-gnu && make -j42 install DESTDIR=/build/reproducible-path/diamond-aligner-2.1.11/debian/diamond-aligner AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/diamond-aligner-2.1.11/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/diamond-aligner-2.1.11 -B/build/reproducible-path/diamond-aligner-2.1.11/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/diamond-aligner-2.1.11/obj-x86_64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/diamond-aligner-2.1.11/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /build/reproducible-path/diamond-aligner-2.1.11/debian/diamond-aligner/usr/bin/diamond make[1]: Leaving directory '/build/reproducible-path/diamond-aligner-2.1.11/obj-x86_64-linux-gnu' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism debian/rules override_dh_compress make[1]: Entering directory '/build/reproducible-path/diamond-aligner-2.1.11' dh_compress --exclude=.pdf make[1]: Leaving directory '/build/reproducible-path/diamond-aligner-2.1.11' dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'diamond-aligner' in '../diamond-aligner_2.1.11-2_amd64.deb'. dpkg-deb: building package 'diamond-aligner-dbgsym' in '../diamond-aligner-dbgsym_2.1.11-2_amd64.deb'. dpkg-genbuildinfo --build=binary -O../diamond-aligner_2.1.11-2_amd64.buildinfo dpkg-genchanges --build=binary -O../diamond-aligner_2.1.11-2_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1134213 and its subdirectories I: Current time: Sun Apr 12 17:16:56 -12 2026 I: pbuilder-time-stamp: 1776057416 Mon Apr 13 05:16:57 UTC 2026 I: Signing ./b1/diamond-aligner_2.1.11-2_amd64.buildinfo as diamond-aligner_2.1.11-2_amd64.buildinfo.asc Mon Apr 13 05:16:57 UTC 2026 I: Signed ./b1/diamond-aligner_2.1.11-2_amd64.buildinfo as ./b1/diamond-aligner_2.1.11-2_amd64.buildinfo.asc Mon Apr 13 05:16:57 UTC 2026 - build #1 for diamond-aligner/unstable/amd64 on ionos15-amd64 done. Starting cleanup. All cleanup done. Mon Apr 13 05:16:57 UTC 2026 - reproducible_build.sh stopped running as /tmp/jenkins-script-XSq3aSV7, removing. /srv/reproducible-results/rbuild-debian/r-b-build.PH0nphoP: total 16 drwxr-xr-x 2 jenkins jenkins 4096 Mar 10 22:54 b1 drwxr-xr-x 2 jenkins jenkins 4096 Mar 10 22:50 b2 -rw-r--r-- 1 jenkins jenkins 2373 Mar 9 10:01 diamond-aligner_2.1.11-2.dsc -rw------- 1 jenkins jenkins 3535 Mar 10 22:50 rbuildlog.wIb0qG0 /srv/reproducible-results/rbuild-debian/r-b-build.PH0nphoP/b1: total 42148 -rw-r--r-- 1 jenkins jenkins 651841 Mar 10 22:54 build.log -rw-r--r-- 1 jenkins jenkins 39684664 Mar 10 22:54 diamond-aligner-dbgsym_2.1.11-2_amd64.deb -rw-r--r-- 1 jenkins jenkins 138004 Mar 10 22:54 diamond-aligner_2.1.11-2.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2373 Mar 10 22:54 diamond-aligner_2.1.11-2.dsc -rw-r--r-- 1 jenkins jenkins 5997 Mar 10 22:54 diamond-aligner_2.1.11-2_amd64.buildinfo -rw-r--r-- 1 jenkins jenkins 6879 Mar 10 22:54 diamond-aligner_2.1.11-2_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1510 Mar 10 22:54 diamond-aligner_2.1.11-2_amd64.changes -rw-r--r-- 1 jenkins jenkins 2648236 Mar 10 22:54 diamond-aligner_2.1.11-2_amd64.deb -rw-r--r-- 1 jenkins jenkins 1340 Mar 10 22:54 diamond-aligner_2.1.11-2_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.PH0nphoP/b2: total 0 Mon Mar 10 22:54:00 UTC 2025 I: Deleting $TMPDIR on ionos15-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sun Apr 12 17:13:44 -12 2026 I: pbuilder-time-stamp: 1776057224 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [diamond-aligner_2.1.11-2.dsc] I: copying [./diamond-aligner_2.1.11.orig.tar.xz] I: copying [./diamond-aligner_2.1.11-2.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./diamond-aligner_2.1.11-2.dsc: unsupported subcommand dpkg-source: info: extracting diamond-aligner in diamond-aligner-2.1.11 dpkg-source: info: unpacking diamond-aligner_2.1.11.orig.tar.xz dpkg-source: info: unpacking diamond-aligner_2.1.11-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying typo.patch dpkg-source: info: applying fix_missing_cstring_riscv64.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1134213/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='59c8965be22f436d8ef9a7f48483df9a' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1134213' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.PH0nphoP/pbuilderrc_oPKV --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.PH0nphoP/b1 --logfile b1/build.log diamond-aligner_2.1.11-2.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos15-amd64 6.12.12+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.12-1~bpo12+1 (2025-02-23) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Mar 4 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1134213/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, zlib1g-dev, debhelper dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19783 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on debhelper; however: Package debhelper is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libbrotli1{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgnutls30t64{a} libgssapi-krb5-2{a} libicu72{a} libidn2-0{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap2{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libp11-kit0{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libtasn1-6{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libxml2{a} m4{a} man-db{a} po-debconf{a} procps{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 61 newly installed, 0 to remove and 0 not upgraded. Need to get 41.6 MB of archives. After unpacking 150 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 libproc2-0 amd64 2:4.0.4-7 [64.9 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 procps amd64 2:4.0.4-7 [878 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.1-1 [243 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-7 [1185 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40.4-5 [92.4 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-7 [294 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3 [493 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.17-3 [862 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.1-1 [770 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 cmake-data all 3.31.6-1 [2268 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 libicu72 amd64 72.1-6 [9421 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b2 [699 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 libarchive13t64 amd64 3.7.4-1.1 [349 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.21.3-4 [32.8 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.2-1 [24.0 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.21.3-4 [80.9 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get: 27 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.21.3-4 [326 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.21.3-4 [138 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 libunistring5 amd64 1.3-1 [476 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 libidn2-0 amd64 2.3.8-1 [109 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-9 [19.8 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-9 [57.5 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 libldap2 amd64 2.6.9+dfsg-1 [192 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 libnghttp3-9 amd64 1.8.0-1 [67.7 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 libffi8 amd64 3.4.7-1 [23.9 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 libgnutls30t64 amd64 3.8.9-2 [1464 kB] Get: 41 http://deb.debian.org/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get: 42 http://deb.debian.org/debian unstable/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 libcurl4t64 amd64 8.12.1-3 [369 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.6.4-1 [106 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 libjsoncpp26 amd64 1.9.6-3 [81.7 kB] Get: 46 http://deb.debian.org/debian unstable/main amd64 librhash1 amd64 1.4.5-1 [132 kB] Get: 47 http://deb.debian.org/debian unstable/main amd64 libuv1t64 amd64 1.50.0-2 [154 kB] Get: 48 http://deb.debian.org/debian unstable/main amd64 cmake amd64 3.31.6-1 [12.0 MB] Get: 49 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.24.1 [90.9 kB] Get: 50 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-4 [539 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 52 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 53 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 54 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 55 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 56 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 57 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.1-1 [1680 kB] Get: 58 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 59 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 60 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.24.1 [920 kB] Get: 61 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Fetched 41.6 MB in 4s (9616 kB/s) Preconfiguring packages ... Selecting previously unselected package libproc2-0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19783 files and directories currently installed.) Preparing to unpack .../00-libproc2-0_2%3a4.0.4-7_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.4-7) ... Selecting previously unselected package procps. Preparing to unpack .../01-procps_2%3a4.0.4-7_amd64.deb ... Unpacking procps (2:4.0.4-7) ... Selecting previously unselected package sensible-utils. 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Setting up libdebhelper-perl (13.24.1) ... Setting up libbrotli1:amd64 (1.1.0-2+b7) ... Setting up libuv1t64:amd64 (1.50.0-2) ... Setting up libmagic1t64:amd64 (1:5.45-3+b1) ... Setting up libnghttp2-14:amd64 (1.64.0-1) ... Setting up gettext-base (0.23.1-1) ... Setting up m4 (1.4.19-7) ... Setting up libcom-err2:amd64 (1.47.2-1) ... Setting up file (1:5.45-3+b1) ... Setting up libelf1t64:amd64 (0.192-4) ... Setting up libkrb5support0:amd64 (1.21.3-4) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-9) ... Setting up autotools-dev (20220109.1) ... Setting up libjsoncpp26:amd64 (1.9.6-3) ... Setting up libproc2-0:amd64 (2:4.0.4-7) ... Setting up libunistring5:amd64 (1.3-1) ... Setting up autopoint (0.23.1-1) ... Setting up libk5crypto3:amd64 (1.21.3-4) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-9) ... Setting up autoconf (2.72-3) ... Setting up libnghttp3-9:amd64 (1.8.0-1) ... Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libffi8:amd64 (3.4.7-1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:amd64 (0.0.8-1+b2) ... Setting up procps (2:4.0.4-7) ... Setting up libtasn1-6:amd64 (4.20.0-2) ... Setting up cmake-data (3.31.6-1) ... Setting up librhash1:amd64 (1.4.5-1) ... Setting up libkrb5-3:amd64 (1.21.3-4) ... Setting up libssh2-1t64:amd64 (1.11.1-1) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b2) ... Setting up libldap2:amd64 (2.6.9+dfsg-1) ... Setting up automake (1:1.17-3) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up gettext (0.23.1-1) ... Setting up libtool (2.5.4-4) ... Setting up libidn2-0:amd64 (2.3.8-1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libp11-kit0:amd64 (0.25.5-3) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-4) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up groff-base (1.23.0-7) ... Setting up libarchive13t64:amd64 (3.7.4-1.1) ... Setting up libgnutls30t64:amd64 (3.8.9-2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpsl5t64:amd64 (0.21.2-1.1+b1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libcurl4t64:amd64 (8.12.1-3) ... Setting up debhelper (13.24.1) ... Setting up cmake (3.31.6-1) ... Processing triggers for libc-bin (2.41-4) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/diamond-aligner-2.1.11/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../diamond-aligner_2.1.11-2_source.changes dpkg-buildpackage: info: source package diamond-aligner dpkg-buildpackage: info: source version 2.1.11-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/diamond-aligner-2.1.11' dh_auto_configure -- -DCMAKE_BUILD_TYPE=Release cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DCMAKE_BUILD_TYPE=Release .. CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- The C compiler identification is GNU 14.2.0 -- The CXX compiler identification is GNU 14.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of ptrdiff_t -- Check size of ptrdiff_t - done -- Check size of int -- Check size of int - done -- Performing Test HAS_GNUPP14 -- Performing Test HAS_GNUPP14 - Success -- Performing Test HAS_GNUPP17 -- Performing Test HAS_GNUPP17 - Success -- Looking for sysinfo -- Looking for sysinfo - found -- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found version "1.3.1") -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Configuring done (1.6s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/diamond-aligner-2.1.11/obj-x86_64-linux-gnu make[1]: Leaving directory '/build/reproducible-path/diamond-aligner-2.1.11' dh_auto_build cd obj-x86_64-linux-gnu && make -j42 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory 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-DARCH_ID=2 -mssse3 -mpopcnt -msse4.1 -msse4.2 -mavx -mavx2 -DEigen=Eigen_AVX2 -MD -MT CMakeFiles/arch_avx2.dir/src/dp/score_profile.cpp.o -MF CMakeFiles/arch_avx2.dir/src/dp/score_profile.cpp.o.d -o CMakeFiles/arch_avx2.dir/src/dp/score_profile.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.11/src/dp/score_profile.cpp In file included from /usr/include/c++/14/list:62, from /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/swipe_wrapper.cpp:22: In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’, inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:998:21, inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:1029:20, inlined from ‘DP::Swipe::ARCH_GENERIC::Matrix::Matrix(int, int) [with Sv = int]’ at /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/full_matrix.h:66:12: /usr/include/c++/14/bits/stl_algobase.h:952:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 952 | *__first = __tmp; | ~~~~~~~~~^~~~~~~ In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’, inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:998:21, inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:1029:20, inlined from ‘DP::Swipe::ARCH_GENERIC::Matrix::Matrix(int, int) [with Sv = int]’ at /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/full_matrix.h:66:12, inlined from ‘std::__cxx11::list DP::Swipe::ARCH_GENERIC::swipe(It, It, std::atomic*, Cbs, DP::TargetVec&, DP::Params&) [with Sv = int; Cbs = DP::NoCBS; It = __gnu_cxx::__normal_iterator >; Cfg = SwipeConfig, int, DummyIdMask >]’ at /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/full_swipe.h:160:9: /usr/include/c++/14/bits/stl_algobase.h:952:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 952 | *__first = __tmp; | ~~~~~~~~~^~~~~~~ In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’, inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:998:21, inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:1029:20, inlined from ‘DP::Swipe::ARCH_GENERIC::Matrix::Matrix(int, int) [with Sv = int]’ at /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/full_matrix.h:66:12, inlined from ‘std::__cxx11::list DP::Swipe::ARCH_GENERIC::swipe(It, It, std::atomic*, Cbs, DP::TargetVec&, DP::Params&) [with Sv = int; Cbs = DP::NoCBS; It = __gnu_cxx::__normal_iterator >; Cfg = SwipeConfig, int, DummyIdMask >]’ at /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/full_swipe.h:160:9: /usr/include/c++/14/bits/stl_algobase.h:952:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 952 | *__first = __tmp; | ~~~~~~~~~^~~~~~~ In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’, inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:998:21, inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:1029:20, inlined from ‘DP::Swipe::ARCH_GENERIC::Matrix::Matrix(int, int) [with Sv = int]’ at /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/full_matrix.h:66:12, inlined from ‘std::__cxx11::list DP::Swipe::ARCH_GENERIC::swipe(It, It, std::atomic*, Cbs, DP::TargetVec&, DP::Params&) [with Sv = int; Cbs = DP::NoCBS; It = StringSetBase::ConstIterator; Cfg = SwipeConfig, int, DummyIdMask >]’ at /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/full_swipe.h:160:9: /usr/include/c++/14/bits/stl_algobase.h:952:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 952 | *__first = __tmp; | ~~~~~~~~~^~~~~~~ In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’, inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:998:21, inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:1029:20, inlined from ‘DP::Swipe::ARCH_GENERIC::Matrix::Matrix(int, int) [with Sv = int]’ at /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/full_matrix.h:66:12, inlined from ‘std::__cxx11::list DP::Swipe::ARCH_GENERIC::swipe(It, It, std::atomic*, Cbs, DP::TargetVec&, DP::Params&) [with Sv = int; Cbs = DP::NoCBS; It = StringSetBase::ConstIterator; Cfg = SwipeConfig, int, DummyIdMask >]’ at /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/full_swipe.h:160:9: /usr/include/c++/14/bits/stl_algobase.h:952:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 952 | *__first = __tmp; | ~~~~~~~~~^~~~~~~ In file included from /usr/include/c++/14/list:62, from /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/swipe_wrapper.cpp:22: In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’, inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:998:21, inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:1029:20, inlined from ‘DP::Swipe::ARCH_AVX2::Matrix::Matrix(int, int) [with Sv = int]’ at /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/full_matrix.h:66:12: /usr/include/c++/14/bits/stl_algobase.h:952:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 952 | *__first = __tmp; | ~~~~~~~~~^~~~~~~ In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’, inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:998:21, inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:1029:20, inlined from ‘DP::Swipe::ARCH_AVX2::Matrix::Matrix(int, int) [with Sv = int]’ at /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/full_matrix.h:66:12, inlined from ‘std::__cxx11::list DP::Swipe::ARCH_AVX2::swipe(It, It, std::atomic*, Cbs, DP::TargetVec&, DP::Params&) [with Sv = int; Cbs = DP::NoCBS; It = __gnu_cxx::__normal_iterator >; Cfg = SwipeConfig, int, DummyIdMask >]’ at /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/full_swipe.h:160:9: /usr/include/c++/14/bits/stl_algobase.h:952:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 952 | *__first = __tmp; | ~~~~~~~~~^~~~~~~ In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’, inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:998:21, inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:1029:20, inlined from ‘DP::Swipe::ARCH_AVX2::Matrix::Matrix(int, int) [with Sv = int]’ at /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/full_matrix.h:66:12, inlined from ‘std::__cxx11::list DP::Swipe::ARCH_AVX2::swipe(It, It, std::atomic*, Cbs, DP::TargetVec&, DP::Params&) [with Sv = int; Cbs = DP::NoCBS; It = __gnu_cxx::__normal_iterator >; Cfg = SwipeConfig, int, DummyIdMask >]’ at /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/full_swipe.h:160:9: /usr/include/c++/14/bits/stl_algobase.h:952:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 952 | *__first = __tmp; | ~~~~~~~~~^~~~~~~ In file included from /usr/include/c++/14/list:62, from /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/swipe_wrapper.cpp:22: In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’, inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:998:21, inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:1029:20, inlined from ‘DP::Swipe::ARCH_SSE4_1::Matrix::Matrix(int, int) [with Sv = int]’ at /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/full_matrix.h:66:12: /usr/include/c++/14/bits/stl_algobase.h:952:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 952 | *__first = __tmp; | ~~~~~~~~~^~~~~~~ In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’, inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:998:21, inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:1029:20, inlined from ‘DP::Swipe::ARCH_SSE4_1::Matrix::Matrix(int, int) [with Sv = int]’ at /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/full_matrix.h:66:12, inlined from ‘std::__cxx11::list DP::Swipe::ARCH_SSE4_1::swipe(It, It, std::atomic*, Cbs, DP::TargetVec&, DP::Params&) [with Sv = int; Cbs = DP::NoCBS; It = __gnu_cxx::__normal_iterator >; Cfg = SwipeConfig, int, DummyIdMask >]’ at /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/full_swipe.h:160:9: /usr/include/c++/14/bits/stl_algobase.h:952:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 952 | *__first = __tmp; | ~~~~~~~~~^~~~~~~ In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’, inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:998:21, inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:1029:20, inlined from ‘DP::Swipe::ARCH_SSE4_1::Matrix::Matrix(int, int) [with Sv = int]’ at /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/full_matrix.h:66:12, inlined from ‘std::__cxx11::list DP::Swipe::ARCH_SSE4_1::swipe(It, It, std::atomic*, Cbs, DP::TargetVec&, DP::Params&) [with Sv = int; Cbs = DP::NoCBS; It = __gnu_cxx::__normal_iterator >; Cfg = SwipeConfig, int, DummyIdMask >]’ at /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/full_swipe.h:160:9: /usr/include/c++/14/bits/stl_algobase.h:952:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 952 | *__first = __tmp; | ~~~~~~~~~^~~~~~~ In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’, inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:998:21, inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:1029:20, inlined from ‘DP::Swipe::ARCH_AVX2::Matrix::Matrix(int, int) [with Sv = int]’ at /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/full_matrix.h:66:12, inlined from ‘std::__cxx11::list DP::Swipe::ARCH_AVX2::swipe(It, It, std::atomic*, Cbs, DP::TargetVec&, DP::Params&) [with Sv = int; Cbs = DP::NoCBS; It = StringSetBase::ConstIterator; Cfg = SwipeConfig, int, DummyIdMask >]’ at /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/full_swipe.h:160:9: /usr/include/c++/14/bits/stl_algobase.h:952:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 952 | *__first = __tmp; | ~~~~~~~~~^~~~~~~ In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’, inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:998:21, inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:1029:20, inlined from ‘DP::Swipe::ARCH_AVX2::Matrix::Matrix(int, int) [with Sv = int]’ at /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/full_matrix.h:66:12, inlined from ‘std::__cxx11::list DP::Swipe::ARCH_AVX2::swipe(It, It, std::atomic*, Cbs, DP::TargetVec&, DP::Params&) [with Sv = int; Cbs = DP::NoCBS; It = StringSetBase::ConstIterator; Cfg = SwipeConfig, int, DummyIdMask >]’ at /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/full_swipe.h:160:9: /usr/include/c++/14/bits/stl_algobase.h:952:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 952 | *__first = __tmp; | ~~~~~~~~~^~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-unknown-warning-option’ may have been intended to silence earlier diagnostics In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’, inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:998:21, inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:1029:20, inlined from ‘DP::Swipe::ARCH_SSE4_1::Matrix::Matrix(int, int) [with Sv = int]’ at /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/full_matrix.h:66:12, inlined from ‘std::__cxx11::list DP::Swipe::ARCH_SSE4_1::swipe(It, It, std::atomic*, Cbs, DP::TargetVec&, DP::Params&) [with Sv = int; Cbs = DP::NoCBS; It = StringSetBase::ConstIterator; Cfg = SwipeConfig, int, DummyIdMask >]’ at /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/full_swipe.h:160:9: /usr/include/c++/14/bits/stl_algobase.h:952:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 952 | *__first = __tmp; | ~~~~~~~~~^~~~~~~ In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’, inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:998:21, inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:1029:20, inlined from ‘DP::Swipe::ARCH_SSE4_1::Matrix::Matrix(int, int) [with Sv = int]’ at /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/full_matrix.h:66:12, inlined from ‘std::__cxx11::list DP::Swipe::ARCH_SSE4_1::swipe(It, It, std::atomic*, Cbs, DP::TargetVec&, DP::Params&) [with Sv = int; Cbs = DP::NoCBS; It = StringSetBase::ConstIterator; Cfg = SwipeConfig, int, DummyIdMask >]’ at /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/full_swipe.h:160:9: /usr/include/c++/14/bits/stl_algobase.h:952:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 952 | *__first = __tmp; | ~~~~~~~~~^~~~~~~ make[3]: Leaving directory '/build/reproducible-path/diamond-aligner-2.1.11/obj-x86_64-linux-gnu' [ 14%] Built target arch_generic At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-unknown-warning-option’ may have been intended to silence earlier diagnostics make[3]: Leaving directory '/build/reproducible-path/diamond-aligner-2.1.11/obj-x86_64-linux-gnu' [ 14%] Built target arch_avx2 At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-unknown-warning-option’ may have been intended to silence earlier diagnostics make[3]: Leaving directory '/build/reproducible-path/diamond-aligner-2.1.11/obj-x86_64-linux-gnu' [ 14%] Built target arch_sse4_1 make -f CMakeFiles/diamond.dir/build.make CMakeFiles/diamond.dir/depend make[3]: Entering directory '/build/reproducible-path/diamond-aligner-2.1.11/obj-x86_64-linux-gnu' cd /build/reproducible-path/diamond-aligner-2.1.11/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/diamond-aligner-2.1.11 /build/reproducible-path/diamond-aligner-2.1.11 /build/reproducible-path/diamond-aligner-2.1.11/obj-x86_64-linux-gnu /build/reproducible-path/diamond-aligner-2.1.11/obj-x86_64-linux-gnu /build/reproducible-path/diamond-aligner-2.1.11/obj-x86_64-linux-gnu/CMakeFiles/diamond.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/diamond-aligner-2.1.11/obj-x86_64-linux-gnu' make -f CMakeFiles/diamond.dir/build.make CMakeFiles/diamond.dir/build make[3]: Entering directory '/build/reproducible-path/diamond-aligner-2.1.11/obj-x86_64-linux-gnu' [ 16%] Building CXX object CMakeFiles/diamond.dir/src/basic/config.cpp.o [ 16%] Building CXX object CMakeFiles/diamond.dir/src/data/queries.cpp.o [ 17%] Building CXX object CMakeFiles/diamond.dir/src/stats/score_matrix.cpp.o [ 17%] Building CXX object CMakeFiles/diamond.dir/src/run/main.cpp.o [ 17%] Building CXX object CMakeFiles/diamond.dir/src/util/command_line_parser.cpp.o [ 17%] Building CXX object CMakeFiles/diamond.dir/src/data/seed_histogram.cpp.o [ 18%] Building CXX object CMakeFiles/diamond.dir/src/util/util.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND 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-Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/align/extend.cpp.o -MF CMakeFiles/diamond.dir/src/align/extend.cpp.o.d -o CMakeFiles/diamond.dir/src/align/extend.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.11/src/align/extend.cpp In file included from /build/reproducible-path/diamond-aligner-2.1.11/src/output/output.h:28, from /build/reproducible-path/diamond-aligner-2.1.11/src/basic/hssp.cpp:23: /build/reproducible-path/diamond-aligner-2.1.11/src/basic/match.h: In constructor ‘Hsp::Hsp(const ApproxHsp&, Loc, Loc)’: /build/reproducible-path/diamond-aligner-2.1.11/src/basic/match.h:270:73: warning: ‘Hsp::subject_range’ will be initialized after [-Wreorder] 270 | Interval query_source_range, query_range, subject_source_range, subject_range; | ^~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.11/src/basic/match.h:270:51: warning: ‘Interval Hsp::subject_source_range’ [-Wreorder] 270 | Interval query_source_range, query_range, subject_source_range, subject_range; | ^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.11/src/basic/hssp.cpp:335:1: warning: when initialized here [-Wreorder] 335 | Hsp::Hsp(const ApproxHsp& h, Loc qlen, Loc tlen) : | ^~~ [ 46%] Building CXX object CMakeFiles/diamond.dir/src/test/test.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_AVX2 -DWITH_SSE4_1 -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.11/src -I/build/reproducible-path/diamond-aligner-2.1.11/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 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-Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/lib/alp/njn_dynprogproblim.cpp.o -MF CMakeFiles/diamond.dir/src/lib/alp/njn_dynprogproblim.cpp.o.d -o CMakeFiles/diamond.dir/src/lib/alp/njn_dynprogproblim.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.11/src/lib/alp/njn_dynprogproblim.cpp In file included from /build/reproducible-path/diamond-aligner-2.1.11/src/lib/alp/njn_dynprogproblim.hpp:39, from /build/reproducible-path/diamond-aligner-2.1.11/src/lib/alp/njn_dynprogproblim.cpp:37: /build/reproducible-path/diamond-aligner-2.1.11/src/lib/alp/njn_dynprogprob.hpp:110:37: warning: ‘virtual Njn::DynProgProb& Njn::DynProgProb::operator=(const Njn::DynProgProb&)’ was hidden [-Woverloaded-virtual=] 110 | virtual inline DynProgProb &operator= (const DynProgProb &dynProgProb_) | ^~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.11/src/lib/alp/njn_dynprogproblim.hpp:90:40: note: by ‘virtual Njn::DynProgProbLim& Njn::DynProgProbLim::operator=(const Njn::DynProgProbLim&)’ 90 | virtual inline DynProgProbLim &operator= (const DynProgProbLim &dynProgProbLim_) | ^~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.11/src/lib/alp/njn_dynprogprob.hpp:124:22: warning: ‘virtual void Njn::DynProgProb::copy(size_t, const double* const*, size_t, long int, long int, long int, long int (*)(long int, size_t), size_t, const double*)’ was hidden [-Woverloaded-virtual=] 124 | virtual void copy ( | ^~~~ /build/reproducible-path/diamond-aligner-2.1.11/src/lib/alp/njn_dynprogproblim.hpp:101:29: note: by ‘Njn::DynProgProbLim::copy’ 101 | virtual inline void copy ( | ^~~~ /build/reproducible-path/diamond-aligner-2.1.11/src/lib/alp/njn_dynprogprob.hpp:116:29: warning: ‘virtual void Njn::DynProgProb::copy(const Njn::DynProgProb&)’ was hidden [-Woverloaded-virtual=] 116 | virtual inline void copy (const DynProgProb &dynProgProb_) | ^~~~ /build/reproducible-path/diamond-aligner-2.1.11/src/lib/alp/njn_dynprogproblim.hpp:101:29: note: by ‘Njn::DynProgProbLim::copy’ 101 | virtual inline void copy ( | ^~~~ [ 58%] Building CXX object CMakeFiles/diamond.dir/src/lib/alp/njn_dynprogprobproto.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_AVX2 -DWITH_SSE4_1 -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.11/src -I/build/reproducible-path/diamond-aligner-2.1.11/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/lib/alp/njn_dynprogprobproto.cpp.o -MF 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-fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/lib/alp/sls_alp.cpp.o -MF CMakeFiles/diamond.dir/src/lib/alp/sls_alp.cpp.o.d -o CMakeFiles/diamond.dir/src/lib/alp/sls_alp.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.11/src/lib/alp/sls_alp.cpp [ 62%] Building CXX object CMakeFiles/diamond.dir/src/lib/alp/sls_alp_data.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_AVX2 -DWITH_SSE4_1 -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.11/src -I/build/reproducible-path/diamond-aligner-2.1.11/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/lib/alp/sls_alp_data.cpp.o -MF CMakeFiles/diamond.dir/src/lib/alp/sls_alp_data.cpp.o.d -o CMakeFiles/diamond.dir/src/lib/alp/sls_alp_data.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.11/src/lib/alp/sls_alp_data.cpp [ 63%] Building CXX object CMakeFiles/diamond.dir/src/lib/alp/sls_alp_regression.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_AVX2 -DWITH_SSE4_1 -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.11/src -I/build/reproducible-path/diamond-aligner-2.1.11/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/lib/alp/sls_alp_regression.cpp.o -MF CMakeFiles/diamond.dir/src/lib/alp/sls_alp_regression.cpp.o.d -o CMakeFiles/diamond.dir/src/lib/alp/sls_alp_regression.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.11/src/lib/alp/sls_alp_regression.cpp [ 64%] Building CXX object CMakeFiles/diamond.dir/src/lib/alp/sls_alp_sim.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_AVX2 -DWITH_SSE4_1 -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.11/src -I/build/reproducible-path/diamond-aligner-2.1.11/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/lib/alp/sls_alp_sim.cpp.o -MF CMakeFiles/diamond.dir/src/lib/alp/sls_alp_sim.cpp.o.d -o CMakeFiles/diamond.dir/src/lib/alp/sls_alp_sim.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.11/src/lib/alp/sls_alp_sim.cpp In file included from /build/reproducible-path/diamond-aligner-2.1.11/src/lib/alp/njn_dynprogproblim.hpp:39, from /build/reproducible-path/diamond-aligner-2.1.11/src/lib/alp/njn_localmaxstat.cpp:39: /build/reproducible-path/diamond-aligner-2.1.11/src/lib/alp/njn_dynprogprob.hpp:110:37: warning: ‘virtual Njn::DynProgProb& Njn::DynProgProb::operator=(const Njn::DynProgProb&)’ was hidden [-Woverloaded-virtual=] 110 | virtual inline DynProgProb &operator= (const DynProgProb &dynProgProb_) | ^~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.11/src/lib/alp/njn_dynprogproblim.hpp:90:40: note: by ‘virtual Njn::DynProgProbLim& Njn::DynProgProbLim::operator=(const Njn::DynProgProbLim&)’ 90 | virtual inline DynProgProbLim &operator= (const DynProgProbLim &dynProgProbLim_) | ^~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.11/src/lib/alp/njn_dynprogprob.hpp:124:22: warning: ‘virtual void Njn::DynProgProb::copy(size_t, const double* const*, size_t, long int, long int, long int, long int (*)(long int, size_t), size_t, const double*)’ was hidden [-Woverloaded-virtual=] 124 | virtual void copy ( | ^~~~ /build/reproducible-path/diamond-aligner-2.1.11/src/lib/alp/njn_dynprogproblim.hpp:101:29: note: by ‘Njn::DynProgProbLim::copy’ 101 | virtual inline void copy ( | ^~~~ /build/reproducible-path/diamond-aligner-2.1.11/src/lib/alp/njn_dynprogprob.hpp:116:29: warning: ‘virtual void Njn::DynProgProb::copy(const Njn::DynProgProb&)’ was hidden [-Woverloaded-virtual=] 116 | virtual inline void copy (const DynProgProb &dynProgProb_) | ^~~~ /build/reproducible-path/diamond-aligner-2.1.11/src/lib/alp/njn_dynprogproblim.hpp:101:29: note: by ‘Njn::DynProgProbLim::copy’ 101 | virtual inline void copy ( | ^~~~ [ 64%] Building CXX object CMakeFiles/diamond.dir/src/lib/alp/sls_basic.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_AVX2 -DWITH_SSE4_1 -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.11/src -I/build/reproducible-path/diamond-aligner-2.1.11/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/lib/alp/sls_basic.cpp.o -MF CMakeFiles/diamond.dir/src/lib/alp/sls_basic.cpp.o.d -o CMakeFiles/diamond.dir/src/lib/alp/sls_basic.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.11/src/lib/alp/sls_basic.cpp [ 65%] Building CXX object CMakeFiles/diamond.dir/src/lib/alp/sls_pvalues.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_AVX2 -DWITH_SSE4_1 -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.11/src -I/build/reproducible-path/diamond-aligner-2.1.11/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/lib/alp/sls_pvalues.cpp.o -MF CMakeFiles/diamond.dir/src/lib/alp/sls_pvalues.cpp.o.d -o CMakeFiles/diamond.dir/src/lib/alp/sls_pvalues.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.11/src/lib/alp/sls_pvalues.cpp [ 65%] Building CXX object CMakeFiles/diamond.dir/src/align/global_ranking/global_ranking.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_AVX2 -DWITH_SSE4_1 -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.11/src -I/build/reproducible-path/diamond-aligner-2.1.11/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/align/global_ranking/global_ranking.cpp.o -MF CMakeFiles/diamond.dir/src/align/global_ranking/global_ranking.cpp.o.d -o CMakeFiles/diamond.dir/src/align/global_ranking/global_ranking.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.11/src/align/global_ranking/global_ranking.cpp In file included from /build/reproducible-path/diamond-aligner-2.1.11/src/lib/alp/njn_dynprogproblim.hpp:39, from /build/reproducible-path/diamond-aligner-2.1.11/src/lib/alp/njn_localmaxstatutil.cpp:39: /build/reproducible-path/diamond-aligner-2.1.11/src/lib/alp/njn_dynprogprob.hpp:110:37: warning: ‘virtual Njn::DynProgProb& Njn::DynProgProb::operator=(const Njn::DynProgProb&)’ was hidden [-Woverloaded-virtual=] 110 | virtual inline DynProgProb &operator= (const DynProgProb &dynProgProb_) | ^~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.11/src/lib/alp/njn_dynprogproblim.hpp:90:40: note: by ‘virtual Njn::DynProgProbLim& Njn::DynProgProbLim::operator=(const Njn::DynProgProbLim&)’ 90 | virtual inline DynProgProbLim &operator= (const DynProgProbLim &dynProgProbLim_) | ^~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.11/src/lib/alp/njn_dynprogprob.hpp:124:22: warning: ‘virtual void Njn::DynProgProb::copy(size_t, const double* const*, size_t, long int, long int, long int, long int (*)(long int, size_t), size_t, const double*)’ was hidden [-Woverloaded-virtual=] 124 | virtual void copy ( | ^~~~ /build/reproducible-path/diamond-aligner-2.1.11/src/lib/alp/njn_dynprogproblim.hpp:101:29: note: by ‘Njn::DynProgProbLim::copy’ 101 | virtual inline void copy ( | ^~~~ /build/reproducible-path/diamond-aligner-2.1.11/src/lib/alp/njn_dynprogprob.hpp:116:29: warning: ‘virtual void Njn::DynProgProb::copy(const Njn::DynProgProb&)’ was hidden [-Woverloaded-virtual=] 116 | virtual inline void copy (const DynProgProb &dynProgProb_) | ^~~~ [ 66%] Building CXX object CMakeFiles/diamond.dir/src/align/global_ranking/extend.cpp.o /build/reproducible-path/diamond-aligner-2.1.11/src/lib/alp/njn_dynprogproblim.hpp:101:29: note: by ‘Njn::DynProgProbLim::copy’ 101 | virtual inline void copy ( | ^~~~ /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_AVX2 -DWITH_SSE4_1 -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.11/src -I/build/reproducible-path/diamond-aligner-2.1.11/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/align/global_ranking/extend.cpp.o -MF CMakeFiles/diamond.dir/src/align/global_ranking/extend.cpp.o.d -o CMakeFiles/diamond.dir/src/align/global_ranking/extend.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.11/src/align/global_ranking/extend.cpp cc1plus: note: unrecognized command-line option ‘-Wno-unknown-warning-option’ may have been intended to silence earlier diagnostics [ 67%] Building CXX object CMakeFiles/diamond.dir/src/lib/blast/blast_seg.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_AVX2 -DWITH_SSE4_1 -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.11/src -I/build/reproducible-path/diamond-aligner-2.1.11/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG 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CMakeFiles/diamond.dir/src/tools/rocid.cpp.o -MF CMakeFiles/diamond.dir/src/tools/rocid.cpp.o.d -o CMakeFiles/diamond.dir/src/tools/rocid.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.11/src/tools/rocid.cpp [ 67%] Building CXX object CMakeFiles/diamond.dir/src/lib/blast/blast_filter.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_AVX2 -DWITH_SSE4_1 -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.11/src -I/build/reproducible-path/diamond-aligner-2.1.11/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/lib/blast/blast_filter.cpp.o -MF CMakeFiles/diamond.dir/src/lib/blast/blast_filter.cpp.o.d -o CMakeFiles/diamond.dir/src/lib/blast/blast_filter.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.11/src/lib/blast/blast_filter.cpp [ 68%] Building CXX object CMakeFiles/diamond.dir/src/lib/blast/nlm_linear_algebra.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_AVX2 -DWITH_SSE4_1 -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.11/src -I/build/reproducible-path/diamond-aligner-2.1.11/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 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-Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/stats/matrices/blosum45.cpp.o -MF CMakeFiles/diamond.dir/src/stats/matrices/blosum45.cpp.o.d -o CMakeFiles/diamond.dir/src/stats/matrices/blosum45.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.11/src/stats/matrices/blosum45.cpp [ 69%] Building CXX object CMakeFiles/diamond.dir/src/stats/matrices/blosum50.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_AVX2 -DWITH_SSE4_1 -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.11/src -I/build/reproducible-path/diamond-aligner-2.1.11/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/stats/matrices/blosum50.cpp.o -MF CMakeFiles/diamond.dir/src/stats/matrices/blosum50.cpp.o.d -o CMakeFiles/diamond.dir/src/stats/matrices/blosum50.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.11/src/stats/matrices/blosum50.cpp [ 70%] Building CXX object CMakeFiles/diamond.dir/src/stats/matrices/blosum62.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_AVX2 -DWITH_SSE4_1 -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.11/src -I/build/reproducible-path/diamond-aligner-2.1.11/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable 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CMakeFiles/arch_sse4_1.dir/src/masking/tantan.cpp.o CMakeFiles/arch_sse4_1.dir/src/dp/scan_diags.cpp.o CMakeFiles/arch_sse4_1.dir/src/dp/ungapped_simd.cpp.o CMakeFiles/arch_sse4_1.dir/src/dp/swipe/anchored_wrapper.cpp.o CMakeFiles/arch_sse4_1.dir/src/dp/score_profile.cpp.o CMakeFiles/arch_avx2.dir/src/dp/swipe/banded_3frame_swipe.cpp.o CMakeFiles/arch_avx2.dir/src/search/stage1_2.cpp.o CMakeFiles/arch_avx2.dir/src/tools/benchmark.cpp.o CMakeFiles/arch_avx2.dir/src/dp/swipe/swipe_wrapper.cpp.o CMakeFiles/arch_avx2.dir/src/masking/tantan.cpp.o CMakeFiles/arch_avx2.dir/src/dp/scan_diags.cpp.o CMakeFiles/arch_avx2.dir/src/dp/ungapped_simd.cpp.o CMakeFiles/arch_avx2.dir/src/dp/swipe/anchored_wrapper.cpp.o CMakeFiles/arch_avx2.dir/src/dp/score_profile.cpp.o -o diamond -lz make[3]: Leaving directory '/build/reproducible-path/diamond-aligner-2.1.11/obj-x86_64-linux-gnu' [100%] Built target diamond make[2]: Leaving directory '/build/reproducible-path/diamond-aligner-2.1.11/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/diamond-aligner-2.1.11/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/diamond-aligner-2.1.11/obj-x86_64-linux-gnu' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/diamond-aligner-2.1.11' cd debian/tests && PATH=/build/reproducible-path/diamond-aligner-2.1.11/obj-x86_64-linux-gnu:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games sh diamond-calls + mktemp -d + TESTDIR=/tmp/tmp.72ZJtdlCl4 + diamond blastp --threads 1 --db test/C.faa.diamond --query test/E.faa --out /tmp/tmp.72ZJtdlCl4/E.faa.vs.C.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.11.165 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.72ZJtdlCl4 #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/C.faa.diamond (type: Diamond database, sequences: 109, letters: 51213) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] Masking queries... [0.003s] Algorithm: Double-indexed Building query histograms... [0.01s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0.002s] Initializing temporary storage... [0.226s] Building reference histograms... [0.009s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... [0.187s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 0.961s Reported 77 pairwise alignments, 77 HSPs. 72 queries aligned. + diamond blastp --threads 1 --db test/E.faa.diamond --query test/C.faa --out /tmp/tmp.72ZJtdlCl4/C.faa.vs.E.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.11.165 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.72ZJtdlCl4 #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/E.faa.diamond (type: Diamond database, sequences: 72, letters: 54509) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] Masking queries... [0.003s] Algorithm: Double-indexed Building query histograms... [0.009s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0.003s] Initializing temporary storage... [0.069s] Building reference histograms... [0.01s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... [0.121s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 0.772s Reported 41 pairwise alignments, 41 HSPs. 15 queries aligned. + diamond blastp --threads 1 --db test/C.faa.diamond --query test/L.faa --out /tmp/tmp.72ZJtdlCl4/L.faa.vs.C.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.11.165 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.72ZJtdlCl4 #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/C.faa.diamond (type: Diamond database, sequences: 109, letters: 51213) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] Masking queries... [0.001s] Algorithm: Double-indexed Building query histograms... [0.005s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0.003s] Initializing temporary storage... [0s] Building reference histograms... [0.009s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... [0.045s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 0.607s Reported 64 pairwise alignments, 64 HSPs. 33 queries aligned. + diamond blastp --threads 1 --db test/L.faa.diamond --query test/C.faa --out /tmp/tmp.72ZJtdlCl4/C.faa.vs.L.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.11.165 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.72ZJtdlCl4 #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/L.faa.diamond (type: Diamond database, sequences: 40, letters: 26652) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] Masking queries... [0.003s] Algorithm: Double-indexed Building query histograms... [0.009s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0.001s] Initializing temporary storage... [0s] Building reference histograms... [0.005s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... [0.087s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 0.52s Reported 133 pairwise alignments, 133 HSPs. 109 queries aligned. + diamond blastp --threads 1 --db test/C.faa.diamond --query test/M.faa --out /tmp/tmp.72ZJtdlCl4/M.faa.vs.C.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.11.165 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.72ZJtdlCl4 #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/C.faa.diamond (type: Diamond database, sequences: 109, letters: 51213) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] Masking queries... [0.001s] Algorithm: Double-indexed Building query histograms... [0.005s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0.002s] Initializing temporary storage... [0s] Building reference histograms... [0.009s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... [0.055s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 0.499s Reported 62 pairwise alignments, 62 HSPs. 33 queries aligned. + diamond blastp --threads 1 --db test/M.faa.diamond --query test/C.faa --out /tmp/tmp.72ZJtdlCl4/C.faa.vs.M.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.11.165 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.72ZJtdlCl4 #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/M.faa.diamond (type: Diamond database, sequences: 40, letters: 26963) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] Masking queries... [0.003s] Algorithm: Double-indexed Building query histograms... [0.009s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0.001s] Initializing temporary storage... [0s] Building reference histograms... [0.005s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... [0.101s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 0.545s Reported 131 pairwise alignments, 131 HSPs. 109 queries aligned. + diamond blastp --ignore-warnings --threads 1 --db test/C.faa.diamond --query test/C2.faa --out /tmp/tmp.72ZJtdlCl4/C2.faa.vs.C.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.11.165 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.72ZJtdlCl4 #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/C.faa.diamond (type: Diamond database, sequences: 109, letters: 51213) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] Masking queries... [0s] Algorithm: Double-indexed Building query histograms... [0s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0.003s] Initializing temporary storage... [0.054s] Building reference histograms... [0.009s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... [0.092s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 0.582s Reported 1 pairwise alignments, 1 HSPs. 1 queries aligned. + diamond blastp --threads 1 --db test/C2.faa.diamond --query test/C.faa --out /tmp/tmp.72ZJtdlCl4/C.faa.vs.C2.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.11.165 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.72ZJtdlCl4 #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/C2.faa.diamond (type: Diamond database, sequences: 2, letters: 726) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] Masking queries... [0.003s] Algorithm: Double-indexed Building query histograms... [0.009s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0s] Initializing temporary storage... [0.158s] Building reference histograms... [0s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... [0.041s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 0.704s Reported 1 pairwise alignments, 1 HSPs. 1 queries aligned. + diamond blastp --threads 1 --db test/E.faa.diamond --query test/L.faa --out /tmp/tmp.72ZJtdlCl4/L.faa.vs.E.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.11.165 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.72ZJtdlCl4 #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/E.faa.diamond (type: Diamond database, sequences: 72, letters: 54509) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] Masking queries... [0.001s] Algorithm: Double-indexed Building query histograms... [0.005s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0.003s] Initializing temporary storage... [0.233s] Building reference histograms... [0.01s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... [0.122s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0.085s] Closing the database... [0s] Cleaning up... [0s] Total time = 0.908s Reported 489 pairwise alignments, 489 HSPs. 32 queries aligned. + diamond blastp --threads 1 --db test/L.faa.diamond --query test/E.faa --out /tmp/tmp.72ZJtdlCl4/E.faa.vs.L.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.11.165 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.72ZJtdlCl4 #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/L.faa.diamond (type: Diamond database, sequences: 40, letters: 26652) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] Masking queries... [0.003s] Algorithm: Double-indexed Building query histograms... [0.01s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0.001s] Initializing temporary storage... [0.072s] Building reference histograms... [0.005s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0.001s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... [0.243s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0.105s] Closing the database... [0s] Cleaning up... [0s] Total time = 0.918s Reported 1173 pairwise alignments, 1173 HSPs. 72 queries aligned. + diamond blastp --threads 1 --db test/E.faa.diamond --query test/M.faa --out /tmp/tmp.72ZJtdlCl4/M.faa.vs.E.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.11.165 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.72ZJtdlCl4 #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/E.faa.diamond (type: Diamond database, sequences: 72, letters: 54509) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] Masking queries... [0.001s] Algorithm: Double-indexed Building query histograms... [0.005s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0.003s] Initializing temporary storage... [0.179s] Building reference histograms... [0.01s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... [0.124s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 0.803s Reported 489 pairwise alignments, 489 HSPs. 32 queries aligned. + diamond blastp --threads 1 --db test/M.faa.diamond --query test/E.faa --out /tmp/tmp.72ZJtdlCl4/E.faa.vs.M.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.11.165 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.72ZJtdlCl4 #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/M.faa.diamond (type: Diamond database, sequences: 40, letters: 26963) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] Masking queries... [0.003s] Algorithm: Double-indexed Building query histograms... [0.01s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0.001s] Initializing temporary storage... [0.001s] Building reference histograms... [0.005s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... [0.266s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 0.746s Reported 1173 pairwise alignments, 1173 HSPs. 72 queries aligned. + diamond blastp --ignore-warnings --threads 1 --db test/E.faa.diamond --query test/C2.faa --out /tmp/tmp.72ZJtdlCl4/C2.faa.vs.E.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.11.165 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.72ZJtdlCl4 #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/E.faa.diamond (type: Diamond database, sequences: 72, letters: 54509) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] Masking queries... [0s] Algorithm: Double-indexed Building query histograms... [0s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0.003s] Initializing temporary storage... [0.002s] Building reference histograms... [0.01s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.003s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.003s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... [0.003s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 0.367s Reported 1 pairwise alignments, 1 HSPs. 1 queries aligned. + diamond blastp --threads 1 --db test/C2.faa.diamond --query test/E.faa --out /tmp/tmp.72ZJtdlCl4/E.faa.vs.C2.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.11.165 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.72ZJtdlCl4 #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/C2.faa.diamond (type: Diamond database, sequences: 2, letters: 726) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] Masking queries... [0.003s] Algorithm: Double-indexed Building query histograms... [0.01s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0s] Initializing temporary storage... [0s] Building reference histograms... [0s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... [0.081s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 0.442s Reported 1 pairwise alignments, 1 HSPs. 1 queries aligned. + diamond blastp --threads 1 --db test/L.faa.diamond --query test/M.faa --out /tmp/tmp.72ZJtdlCl4/M.faa.vs.L.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.11.165 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.72ZJtdlCl4 #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/L.faa.diamond (type: Diamond database, sequences: 40, letters: 26652) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] Masking queries... [0.001s] Algorithm: Double-indexed Building query histograms... [0.005s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0.001s] Initializing temporary storage... [0s] Building reference histograms... [0.005s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... [0.095s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 0.603s Reported 390 pairwise alignments, 390 HSPs. 39 queries aligned. + diamond blastp --threads 1 --db test/M.faa.diamond --query test/L.faa --out /tmp/tmp.72ZJtdlCl4/L.faa.vs.M.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.11.165 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.72ZJtdlCl4 #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/M.faa.diamond (type: Diamond database, sequences: 40, letters: 26963) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] Masking queries... [0.001s] Algorithm: Double-indexed Building query histograms... [0.005s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0.001s] Initializing temporary storage... [0.001s] Building reference histograms... [0.005s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... [0.16s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 0.674s Reported 390 pairwise alignments, 390 HSPs. 40 queries aligned. + diamond blastp --ignore-warnings --threads 1 --db test/L.faa.diamond --query test/C2.faa --out /tmp/tmp.72ZJtdlCl4/C2.faa.vs.L.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.11.165 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.72ZJtdlCl4 #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/L.faa.diamond (type: Diamond database, sequences: 40, letters: 26652) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] Masking queries... [0s] Algorithm: Double-indexed Building query histograms... [0s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0.001s] Initializing temporary storage... [0.001s] Building reference histograms... [0.005s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... [0.004s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 0.266s Reported 1 pairwise alignments, 1 HSPs. 1 queries aligned. + diamond blastp --threads 1 --db test/C2.faa.diamond --query test/L.faa --out /tmp/tmp.72ZJtdlCl4/L.faa.vs.C2.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.11.165 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.72ZJtdlCl4 #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/C2.faa.diamond (type: Diamond database, sequences: 2, letters: 726) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0.002s] Loading query sequences... [0s] Masking queries... [0.001s] Algorithm: Double-indexed Building query histograms... [0.005s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0s] Initializing temporary storage... [0.001s] Building reference histograms... [0s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... [0.002s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 0.263s Reported 1 pairwise alignments, 1 HSPs. 1 queries aligned. + diamond blastp --ignore-warnings --threads 1 --db test/M.faa.diamond --query test/C2.faa --out /tmp/tmp.72ZJtdlCl4/C2.faa.vs.M.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.11.165 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.72ZJtdlCl4 #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/M.faa.diamond (type: Diamond database, sequences: 40, letters: 26963) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] Masking queries... [0s] Algorithm: Double-indexed Building query histograms... [0s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0.001s] Initializing temporary storage... [0s] Building reference histograms... [0.005s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... [0.004s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 0.261s Reported 1 pairwise alignments, 1 HSPs. 1 queries aligned. + diamond blastp --threads 1 --db test/C2.faa.diamond --query test/M.faa --out /tmp/tmp.72ZJtdlCl4/M.faa.vs.C2.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.11.165 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.72ZJtdlCl4 #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/C2.faa.diamond (type: Diamond database, sequences: 2, letters: 726) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] Masking queries... [0.001s] Algorithm: Double-indexed Building query histograms... [0.005s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0s] Initializing temporary storage... [0s] Building reference histograms... [0s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... [0.002s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 0.255s Reported 1 pairwise alignments, 1 HSPs. 1 queries aligned. + rm -rf /tmp/tmp.72ZJtdlCl4 make[1]: Leaving directory '/build/reproducible-path/diamond-aligner-2.1.11' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/diamond-aligner/ cd obj-x86_64-linux-gnu && make -j42 install DESTDIR=/build/reproducible-path/diamond-aligner-2.1.11/debian/diamond-aligner AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/diamond-aligner-2.1.11/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/diamond-aligner-2.1.11 -B/build/reproducible-path/diamond-aligner-2.1.11/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/diamond-aligner-2.1.11/obj-x86_64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/diamond-aligner-2.1.11/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /build/reproducible-path/diamond-aligner-2.1.11/debian/diamond-aligner/usr/bin/diamond make[1]: Leaving directory '/build/reproducible-path/diamond-aligner-2.1.11/obj-x86_64-linux-gnu' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism debian/rules override_dh_compress make[1]: Entering directory '/build/reproducible-path/diamond-aligner-2.1.11' dh_compress --exclude=.pdf make[1]: Leaving directory '/build/reproducible-path/diamond-aligner-2.1.11' dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'diamond-aligner' in '../diamond-aligner_2.1.11-2_amd64.deb'. dpkg-deb: building package 'diamond-aligner-dbgsym' in '../diamond-aligner-dbgsym_2.1.11-2_amd64.deb'. dpkg-genbuildinfo --build=binary -O../diamond-aligner_2.1.11-2_amd64.buildinfo dpkg-genchanges --build=binary -O../diamond-aligner_2.1.11-2_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1134213 and its subdirectories I: Current time: Sun Apr 12 17:16:56 -12 2026 I: pbuilder-time-stamp: 1776057416 Mon Mar 10 22:54:01 UTC 2025 I: 1st build successful. Starting 2nd build on remote node ionos1-amd64.debian.net. Mon Mar 10 22:54:01 UTC 2025 I: Preparing to do remote build '2' on ionos1-amd64.debian.net. Mon Mar 10 22:54:01 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos1-amd64.debian.net is marked as down. Mon Mar 10 22:54:01 UTC 2025 - checking via ssh if ionos1-amd64.debian.net is up. removed '/tmp/read-only-fs-test-3wgyRu' ==================================================================================== Mon Mar 10 22:54:02 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos1-amd64, called using "2 diamond-aligner unstable /srv/reproducible-results/rbuild-debian/r-b-build.PH0nphoP 2.1.11-2" as arguments. Mon Mar 10 22:54:02 UTC 2025 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-9XoPtzfs" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Mon Mar 10 22:54:02 UTC 2025 I: Downloading source for unstable/diamond-aligner=2.1.11-2 Reading package lists... NOTICE: 'diamond-aligner' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/diamond-aligner.git Please use: git clone https://salsa.debian.org/med-team/diamond-aligner.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 4440 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main diamond-aligner 2.1.11-2 (dsc) [2373 B] Get:2 http://deb.debian.org/debian unstable/main diamond-aligner 2.1.11-2 (tar) [4300 kB] Get:3 http://deb.debian.org/debian unstable/main diamond-aligner 2.1.11-2 (diff) [138 kB] Fetched 4440 kB in 0s (34.2 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'diamond-aligner' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/diamond-aligner.git Please use: git clone https://salsa.debian.org/med-team/diamond-aligner.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 4440 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main diamond-aligner 2.1.11-2 (dsc) [2373 B] Get:2 http://deb.debian.org/debian unstable/main diamond-aligner 2.1.11-2 (tar) [4300 kB] Get:3 http://deb.debian.org/debian unstable/main diamond-aligner 2.1.11-2 (diff) [138 kB] Fetched 4440 kB in 0s (34.2 MB/s) Download complete and in download only mode ============================================================================= Re-Building diamond-aligner in unstable on amd64 on ionos1-amd64 now. Date: Mon Mar 10 22:54:03 UTC 2025 Date UTC: Mon Mar 10 22:54:03 UTC 2025 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.PH0nphoP + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.PH0nphoP/pbuilderrc_TOfg + case ${ARCH} in + case $ARCH in + locale=et_EE + language=et + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' diamond-aligner = debian-installer -o diamond-aligner = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' diamond-aligner = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.PH0nphoP/pbuilderrc_TOfg --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.PH0nphoP/b2 --logfile b2/build.log diamond-aligner_2.1.11-2.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Tue Mar 11 12:54:03 +14 2025 I: pbuilder-time-stamp: 1741647243 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [diamond-aligner_2.1.11-2.dsc] I: copying [./diamond-aligner_2.1.11.orig.tar.xz] I: copying [./diamond-aligner_2.1.11-2.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./diamond-aligner_2.1.11-2.dsc: unsupported subcommand dpkg-source: info: extracting diamond-aligner in diamond-aligner-2.1.11 dpkg-source: info: unpacking diamond-aligner_2.1.11.orig.tar.xz dpkg-source: info: unpacking diamond-aligner_2.1.11-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying typo.patch dpkg-source: info: applying fix_missing_cstring_riscv64.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/953146/tmp/hooks/D01_modify_environment starting debug: Running on ionos1-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Mar 10 22:54 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/953146/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/953146/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.2.37(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' DIRSTACK=() DISTRIBUTION=unstable EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=da77e844034a4635850c04354c547d46 LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=953146 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.PH0nphoP/pbuilderrc_TOfg --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.PH0nphoP/b2 --logfile b2/build.log diamond-aligner_2.1.11-2.dsc' SUDO_GID=110 SUDO_UID=105 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://46.16.76.132:3128 I: uname -a Linux i-capture-the-hostname 6.1.0-31-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.128-1 (2025-02-07) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Mar 4 11:20 /bin -> usr/bin I: user script /srv/workspace/pbuilder/953146/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, zlib1g-dev, debhelper dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19783 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on debhelper; however: Package debhelper is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libbrotli1{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgnutls30t64{a} libgssapi-krb5-2{a} libicu72{a} libidn2-0{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap2{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libp11-kit0{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libtasn1-6{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libxml2{a} m4{a} man-db{a} po-debconf{a} procps{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 61 newly installed, 0 to remove and 0 not upgraded. Need to get 41.6 MB of archives. After unpacking 150 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 libproc2-0 amd64 2:4.0.4-7 [64.9 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 procps amd64 2:4.0.4-7 [878 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.1-1 [243 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-7 [1185 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40.4-5 [92.4 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-7 [294 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3 [493 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.17-3 [862 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.1-1 [770 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 cmake-data all 3.31.6-1 [2268 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 libicu72 amd64 72.1-6 [9421 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b2 [699 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 libarchive13t64 amd64 3.7.4-1.1 [349 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.21.3-4 [32.8 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.2-1 [24.0 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.21.3-4 [80.9 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get: 27 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.21.3-4 [326 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.21.3-4 [138 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 libunistring5 amd64 1.3-1 [476 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 libidn2-0 amd64 2.3.8-1 [109 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-9 [19.8 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-9 [57.5 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 libldap2 amd64 2.6.9+dfsg-1 [192 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 libnghttp3-9 amd64 1.8.0-1 [67.7 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 libffi8 amd64 3.4.7-1 [23.9 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 libgnutls30t64 amd64 3.8.9-2 [1464 kB] Get: 41 http://deb.debian.org/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get: 42 http://deb.debian.org/debian unstable/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 libcurl4t64 amd64 8.12.1-3 [369 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.6.4-1 [106 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 libjsoncpp26 amd64 1.9.6-3 [81.7 kB] Get: 46 http://deb.debian.org/debian unstable/main amd64 librhash1 amd64 1.4.5-1 [132 kB] Get: 47 http://deb.debian.org/debian unstable/main amd64 libuv1t64 amd64 1.50.0-2 [154 kB] Get: 48 http://deb.debian.org/debian unstable/main amd64 cmake amd64 3.31.6-1 [12.0 MB] Get: 49 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.24.1 [90.9 kB] Get: 50 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-4 [539 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 52 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 53 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 54 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 55 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 56 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 57 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.1-1 [1680 kB] Get: 58 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 59 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 60 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.24.1 [920 kB] Get: 61 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Fetched 41.6 MB in 5s (7899 kB/s) Preconfiguring packages ... Selecting previously unselected package libproc2-0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19783 files and directories currently installed.) Preparing to unpack .../00-libproc2-0_2%3a4.0.4-7_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.4-7) ... Selecting previously unselected package procps. Preparing to unpack .../01-procps_2%3a4.0.4-7_amd64.deb ... Unpacking procps (2:4.0.4-7) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../02-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../03-libmagic-mgc_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../04-libmagic1t64_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../05-file_1%3a5.45-3+b1_amd64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../06-gettext-base_0.23.1-1_amd64.deb ... Unpacking gettext-base (0.23.1-1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../07-libuchardet0_0.0.8-1+b2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../08-groff-base_1.23.0-7_amd64.deb ... Unpacking groff-base (1.23.0-7) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../09-bsdextrautils_2.40.4-5_amd64.deb ... Unpacking bsdextrautils (2.40.4-5) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../10-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../11-man-db_2.13.0-1_amd64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../12-m4_1.4.19-7_amd64.deb ... Unpacking m4 (1.4.19-7) ... Selecting previously unselected package autoconf. Preparing to unpack .../13-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../14-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../15-automake_1%3a1.17-3_all.deb ... Unpacking automake (1:1.17-3) ... Selecting previously unselected package autopoint. Preparing to unpack .../16-autopoint_0.23.1-1_all.deb ... Unpacking autopoint (0.23.1-1) ... Selecting previously unselected package cmake-data. Preparing to unpack .../17-cmake-data_3.31.6-1_all.deb ... Unpacking cmake-data (3.31.6-1) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../18-libicu72_72.1-6_amd64.deb ... Unpacking libicu72:amd64 (72.1-6) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../19-libxml2_2.12.7+dfsg+really2.9.14-0.2+b2_amd64.deb ... Unpacking libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b2) ... Selecting previously unselected package libarchive13t64:amd64. Preparing to unpack .../20-libarchive13t64_3.7.4-1.1_amd64.deb ... Unpacking libarchive13t64:amd64 (3.7.4-1.1) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../21-libbrotli1_1.1.0-2+b7_amd64.deb ... Unpacking libbrotli1:amd64 (1.1.0-2+b7) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../22-libkrb5support0_1.21.3-4_amd64.deb ... Unpacking libkrb5support0:amd64 (1.21.3-4) ... Selecting previously unselected package libcom-err2:amd64. Preparing to unpack .../23-libcom-err2_1.47.2-1_amd64.deb ... Unpacking libcom-err2:amd64 (1.47.2-1) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../24-libk5crypto3_1.21.3-4_amd64.deb ... Unpacking libk5crypto3:amd64 (1.21.3-4) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../25-libkeyutils1_1.6.3-4_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.3-4) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../26-libkrb5-3_1.21.3-4_amd64.deb ... Unpacking libkrb5-3:amd64 (1.21.3-4) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../27-libgssapi-krb5-2_1.21.3-4_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.21.3-4) ... Selecting previously unselected package libunistring5:amd64. Preparing to unpack .../28-libunistring5_1.3-1_amd64.deb ... Unpacking libunistring5:amd64 (1.3-1) ... Selecting previously unselected package libidn2-0:amd64. Preparing to unpack .../29-libidn2-0_2.3.8-1_amd64.deb ... Unpacking libidn2-0:amd64 (2.3.8-1) ... Selecting previously unselected package libsasl2-modules-db:amd64. Preparing to unpack .../30-libsasl2-modules-db_2.1.28+dfsg1-9_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.28+dfsg1-9) ... Selecting previously unselected package libsasl2-2:amd64. Preparing to unpack .../31-libsasl2-2_2.1.28+dfsg1-9_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.28+dfsg1-9) ... Selecting previously unselected package libldap2:amd64. Preparing to unpack .../32-libldap2_2.6.9+dfsg-1_amd64.deb ... Unpacking libldap2:amd64 (2.6.9+dfsg-1) ... Selecting previously unselected package libnghttp2-14:amd64. Preparing to unpack .../33-libnghttp2-14_1.64.0-1_amd64.deb ... Unpacking libnghttp2-14:amd64 (1.64.0-1) ... Selecting previously unselected package libnghttp3-9:amd64. Preparing to unpack .../34-libnghttp3-9_1.8.0-1_amd64.deb ... Unpacking libnghttp3-9:amd64 (1.8.0-1) ... Selecting previously unselected package libpsl5t64:amd64. Preparing to unpack .../35-libpsl5t64_0.21.2-1.1+b1_amd64.deb ... Unpacking libpsl5t64:amd64 (0.21.2-1.1+b1) ... Selecting previously unselected package libffi8:amd64. Preparing to unpack .../36-libffi8_3.4.7-1_amd64.deb ... Unpacking libffi8:amd64 (3.4.7-1) ... Selecting previously unselected package libp11-kit0:amd64. Preparing to unpack .../37-libp11-kit0_0.25.5-3_amd64.deb ... Unpacking libp11-kit0:amd64 (0.25.5-3) ... Selecting previously unselected package libtasn1-6:amd64. Preparing to unpack .../38-libtasn1-6_4.20.0-2_amd64.deb ... Unpacking libtasn1-6:amd64 (4.20.0-2) ... Selecting previously unselected package libgnutls30t64:amd64. Preparing to unpack .../39-libgnutls30t64_3.8.9-2_amd64.deb ... Unpacking libgnutls30t64:amd64 (3.8.9-2) ... Selecting previously unselected package librtmp1:amd64. Preparing to unpack .../40-librtmp1_2.4+20151223.gitfa8646d.1-2+b5_amd64.deb ... Unpacking librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Selecting previously unselected package libssh2-1t64:amd64. Preparing to unpack .../41-libssh2-1t64_1.11.1-1_amd64.deb ... Unpacking libssh2-1t64:amd64 (1.11.1-1) ... Selecting previously unselected package libcurl4t64:amd64. Preparing to unpack .../42-libcurl4t64_8.12.1-3_amd64.deb ... Unpacking libcurl4t64:amd64 (8.12.1-3) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../43-libexpat1_2.6.4-1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.4-1) ... Selecting previously unselected package libjsoncpp26:amd64. Preparing to unpack .../44-libjsoncpp26_1.9.6-3_amd64.deb ... Unpacking libjsoncpp26:amd64 (1.9.6-3) ... Selecting previously unselected package librhash1:amd64. Preparing to unpack .../45-librhash1_1.4.5-1_amd64.deb ... Unpacking librhash1:amd64 (1.4.5-1) ... Selecting previously unselected package libuv1t64:amd64. Preparing to unpack .../46-libuv1t64_1.50.0-2_amd64.deb ... Unpacking libuv1t64:amd64 (1.50.0-2) ... Selecting previously unselected package cmake. Preparing to unpack .../47-cmake_3.31.6-1_amd64.deb ... Unpacking cmake (3.31.6-1) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../48-libdebhelper-perl_13.24.1_all.deb ... Unpacking libdebhelper-perl (13.24.1) ... Selecting previously unselected package libtool. Preparing to unpack .../49-libtool_2.5.4-4_all.deb ... Unpacking libtool (2.5.4-4) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../50-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../51-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../52-libfile-stripnondeterminism-perl_1.14.1-2_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.1-2) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../53-dh-strip-nondeterminism_1.14.1-2_all.deb ... Unpacking dh-strip-nondeterminism (1.14.1-2) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../54-libelf1t64_0.192-4_amd64.deb ... Unpacking libelf1t64:amd64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../55-dwz_0.15-1+b1_amd64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../56-gettext_0.23.1-1_amd64.deb ... Unpacking gettext (0.23.1-1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../57-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../58-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../59-debhelper_13.24.1_all.deb ... Unpacking debhelper (13.24.1) ... Selecting previously unselected package zlib1g-dev:amd64. Preparing to unpack .../60-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1+b1_amd64.deb ... Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libexpat1:amd64 (2.6.4-1) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up libkeyutils1:amd64 (1.6.3-4) ... Setting up libicu72:amd64 (72.1-6) ... Setting up bsdextrautils (2.40.4-5) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.24.1) ... Setting up libbrotli1:amd64 (1.1.0-2+b7) ... Setting up libuv1t64:amd64 (1.50.0-2) ... Setting up libmagic1t64:amd64 (1:5.45-3+b1) ... Setting up libnghttp2-14:amd64 (1.64.0-1) ... Setting up gettext-base (0.23.1-1) ... Setting up m4 (1.4.19-7) ... Setting up libcom-err2:amd64 (1.47.2-1) ... Setting up file (1:5.45-3+b1) ... Setting up libelf1t64:amd64 (0.192-4) ... Setting up libkrb5support0:amd64 (1.21.3-4) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-9) ... Setting up autotools-dev (20220109.1) ... Setting up libjsoncpp26:amd64 (1.9.6-3) ... Setting up libproc2-0:amd64 (2:4.0.4-7) ... Setting up libunistring5:amd64 (1.3-1) ... Setting up autopoint (0.23.1-1) ... Setting up libk5crypto3:amd64 (1.21.3-4) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-9) ... Setting up autoconf (2.72-3) ... Setting up libnghttp3-9:amd64 (1.8.0-1) ... Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libffi8:amd64 (3.4.7-1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:amd64 (0.0.8-1+b2) ... Setting up procps (2:4.0.4-7) ... Setting up libtasn1-6:amd64 (4.20.0-2) ... Setting up cmake-data (3.31.6-1) ... Setting up librhash1:amd64 (1.4.5-1) ... Setting up libkrb5-3:amd64 (1.21.3-4) ... Setting up libssh2-1t64:amd64 (1.11.1-1) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b2) ... Setting up libldap2:amd64 (2.6.9+dfsg-1) ... Setting up automake (1:1.17-3) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up gettext (0.23.1-1) ... Setting up libtool (2.5.4-4) ... Setting up libidn2-0:amd64 (2.3.8-1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libp11-kit0:amd64 (0.25.5-3) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-4) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up groff-base (1.23.0-7) ... Setting up libarchive13t64:amd64 (3.7.4-1.1) ... Setting up libgnutls30t64:amd64 (3.8.9-2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpsl5t64:amd64 (0.21.2-1.1+b1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libcurl4t64:amd64 (8.12.1-3) ... Setting up debhelper (13.24.1) ... Setting up cmake (3.31.6-1) ... Processing triggers for libc-bin (2.41-4) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/953146/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for unstable I: user script /srv/workspace/pbuilder/953146/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/diamond-aligner-2.1.11/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../diamond-aligner_2.1.11-2_source.changes dpkg-buildpackage: info: source package diamond-aligner dpkg-buildpackage: info: source version 2.1.11-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/diamond-aligner-2.1.11' dh_auto_configure -- -DCMAKE_BUILD_TYPE=Release cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DCMAKE_BUILD_TYPE=Release .. CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. 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-D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.11/src -I/build/reproducible-path/diamond-aligner-2.1.11/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -DDISPATCH_ARCH=ARCH_GENERIC -DARCH_ID=0 -DEigen=Eigen_GENERIC -MD -MT CMakeFiles/arch_generic.dir/src/dp/scan_diags.cpp.o -MF CMakeFiles/arch_generic.dir/src/dp/scan_diags.cpp.o.d -o CMakeFiles/arch_generic.dir/src/dp/scan_diags.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.11/src/dp/scan_diags.cpp [ 13%] Building CXX object CMakeFiles/arch_generic.dir/src/dp/ungapped_simd.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_AVX2 -DWITH_SSE4_1 -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.11/src -I/build/reproducible-path/diamond-aligner-2.1.11/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -DDISPATCH_ARCH=ARCH_GENERIC -DARCH_ID=0 -DEigen=Eigen_GENERIC -MD -MT CMakeFiles/arch_generic.dir/src/dp/ungapped_simd.cpp.o -MF CMakeFiles/arch_generic.dir/src/dp/ungapped_simd.cpp.o.d -o CMakeFiles/arch_generic.dir/src/dp/ungapped_simd.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.11/src/dp/ungapped_simd.cpp [ 14%] Building CXX object CMakeFiles/arch_generic.dir/src/dp/swipe/anchored_wrapper.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_AVX2 -DWITH_SSE4_1 -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.11/src -I/build/reproducible-path/diamond-aligner-2.1.11/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -DDISPATCH_ARCH=ARCH_GENERIC -DARCH_ID=0 -DEigen=Eigen_GENERIC -MD -MT CMakeFiles/arch_generic.dir/src/dp/swipe/anchored_wrapper.cpp.o -MF CMakeFiles/arch_generic.dir/src/dp/swipe/anchored_wrapper.cpp.o.d -o CMakeFiles/arch_generic.dir/src/dp/swipe/anchored_wrapper.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/anchored_wrapper.cpp [ 14%] Building CXX object CMakeFiles/arch_generic.dir/src/dp/score_profile.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_AVX2 -DWITH_SSE4_1 -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.11/src -I/build/reproducible-path/diamond-aligner-2.1.11/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -DDISPATCH_ARCH=ARCH_GENERIC -DARCH_ID=0 -DEigen=Eigen_GENERIC -MD -MT CMakeFiles/arch_generic.dir/src/dp/score_profile.cpp.o -MF CMakeFiles/arch_generic.dir/src/dp/score_profile.cpp.o.d -o CMakeFiles/arch_generic.dir/src/dp/score_profile.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.11/src/dp/score_profile.cpp In file included from /usr/include/c++/14/list:62, from /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/swipe_wrapper.cpp:22: In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’, inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:998:21, inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:1029:20, inlined from ‘DP::Swipe::ARCH_GENERIC::Matrix::Matrix(int, int) [with Sv = int]’ at /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/full_matrix.h:66:12: /usr/include/c++/14/bits/stl_algobase.h:952:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 952 | *__first = __tmp; | ~~~~~~~~~^~~~~~~ In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’, inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:998:21, inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:1029:20, inlined from ‘DP::Swipe::ARCH_GENERIC::Matrix::Matrix(int, int) [with Sv = int]’ at /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/full_matrix.h:66:12, inlined from ‘std::__cxx11::list DP::Swipe::ARCH_GENERIC::swipe(It, It, std::atomic*, Cbs, DP::TargetVec&, DP::Params&) [with Sv = int; Cbs = DP::NoCBS; It = __gnu_cxx::__normal_iterator >; Cfg = SwipeConfig, int, DummyIdMask >]’ at /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/full_swipe.h:160:9: /usr/include/c++/14/bits/stl_algobase.h:952:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 952 | *__first = __tmp; | ~~~~~~~~~^~~~~~~ In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’, inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:998:21, inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:1029:20, inlined from ‘DP::Swipe::ARCH_GENERIC::Matrix::Matrix(int, int) [with Sv = int]’ at /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/full_matrix.h:66:12, inlined from ‘std::__cxx11::list DP::Swipe::ARCH_GENERIC::swipe(It, It, std::atomic*, Cbs, DP::TargetVec&, DP::Params&) [with Sv = int; Cbs = DP::NoCBS; It = __gnu_cxx::__normal_iterator >; Cfg = SwipeConfig, int, DummyIdMask >]’ at /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/full_swipe.h:160:9: /usr/include/c++/14/bits/stl_algobase.h:952:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 952 | *__first = __tmp; | ~~~~~~~~~^~~~~~~ In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’, inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:998:21, inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:1029:20, inlined from ‘DP::Swipe::ARCH_GENERIC::Matrix::Matrix(int, int) [with Sv = int]’ at /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/full_matrix.h:66:12, inlined from ‘std::__cxx11::list DP::Swipe::ARCH_GENERIC::swipe(It, It, std::atomic*, Cbs, DP::TargetVec&, DP::Params&) [with Sv = int; Cbs = DP::NoCBS; It = StringSetBase::ConstIterator; Cfg = SwipeConfig, int, DummyIdMask >]’ at /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/full_swipe.h:160:9: /usr/include/c++/14/bits/stl_algobase.h:952:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 952 | *__first = __tmp; | ~~~~~~~~~^~~~~~~ In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’, inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:998:21, inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:1029:20, inlined from ‘DP::Swipe::ARCH_GENERIC::Matrix::Matrix(int, int) [with Sv = int]’ at /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/full_matrix.h:66:12, inlined from ‘std::__cxx11::list DP::Swipe::ARCH_GENERIC::swipe(It, It, std::atomic*, Cbs, DP::TargetVec&, DP::Params&) [with Sv = int; Cbs = DP::NoCBS; It = StringSetBase::ConstIterator; Cfg = SwipeConfig, int, DummyIdMask >]’ at /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/full_swipe.h:160:9: /usr/include/c++/14/bits/stl_algobase.h:952:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 952 | *__first = __tmp; | ~~~~~~~~~^~~~~~~ In file included from /usr/include/c++/14/list:62, from /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/swipe_wrapper.cpp:22: In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’, inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:998:21, inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:1029:20, inlined from ‘DP::Swipe::ARCH_AVX2::Matrix::Matrix(int, int) [with Sv = int]’ at /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/full_matrix.h:66:12: /usr/include/c++/14/bits/stl_algobase.h:952:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 952 | *__first = __tmp; | ~~~~~~~~~^~~~~~~ In file included from /usr/include/c++/14/list:62, from /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/swipe_wrapper.cpp:22: In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’, inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:998:21, inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:1029:20, inlined from ‘DP::Swipe::ARCH_SSE4_1::Matrix::Matrix(int, int) [with Sv = int]’ at /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/full_matrix.h:66:12: /usr/include/c++/14/bits/stl_algobase.h:952:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 952 | *__first = __tmp; | ~~~~~~~~~^~~~~~~ In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’, inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:998:21, inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:1029:20, inlined from ‘DP::Swipe::ARCH_AVX2::Matrix::Matrix(int, int) [with Sv = int]’ at /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/full_matrix.h:66:12, inlined from ‘std::__cxx11::list DP::Swipe::ARCH_AVX2::swipe(It, It, std::atomic*, Cbs, DP::TargetVec&, DP::Params&) [with Sv = int; Cbs = DP::NoCBS; It = __gnu_cxx::__normal_iterator >; Cfg = SwipeConfig, int, DummyIdMask >]’ at /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/full_swipe.h:160:9: /usr/include/c++/14/bits/stl_algobase.h:952:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 952 | *__first = __tmp; | ~~~~~~~~~^~~~~~~ In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’, inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:998:21, inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:1029:20, inlined from ‘DP::Swipe::ARCH_AVX2::Matrix::Matrix(int, int) [with Sv = int]’ at /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/full_matrix.h:66:12, inlined from ‘std::__cxx11::list DP::Swipe::ARCH_AVX2::swipe(It, It, std::atomic*, Cbs, DP::TargetVec&, DP::Params&) [with Sv = int; Cbs = DP::NoCBS; It = __gnu_cxx::__normal_iterator >; Cfg = SwipeConfig, int, DummyIdMask >]’ at /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/full_swipe.h:160:9: /usr/include/c++/14/bits/stl_algobase.h:952:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 952 | *__first = __tmp; | ~~~~~~~~~^~~~~~~ In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’, inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:998:21, inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:1029:20, inlined from ‘DP::Swipe::ARCH_SSE4_1::Matrix::Matrix(int, int) [with Sv = int]’ at /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/full_matrix.h:66:12, inlined from ‘std::__cxx11::list DP::Swipe::ARCH_SSE4_1::swipe(It, It, std::atomic*, Cbs, DP::TargetVec&, DP::Params&) [with Sv = int; Cbs = DP::NoCBS; It = __gnu_cxx::__normal_iterator >; Cfg = SwipeConfig, int, DummyIdMask >]’ at /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/full_swipe.h:160:9: /usr/include/c++/14/bits/stl_algobase.h:952:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 952 | *__first = __tmp; | ~~~~~~~~~^~~~~~~ In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’, inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:998:21, inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:1029:20, inlined from ‘DP::Swipe::ARCH_SSE4_1::Matrix::Matrix(int, int) [with Sv = int]’ at /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/full_matrix.h:66:12, inlined from ‘std::__cxx11::list DP::Swipe::ARCH_SSE4_1::swipe(It, It, std::atomic*, Cbs, DP::TargetVec&, DP::Params&) [with Sv = int; Cbs = DP::NoCBS; It = __gnu_cxx::__normal_iterator >; Cfg = SwipeConfig, int, DummyIdMask >]’ at /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/full_swipe.h:160:9: /usr/include/c++/14/bits/stl_algobase.h:952:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 952 | *__first = __tmp; | ~~~~~~~~~^~~~~~~ In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’, inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:998:21, inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:1029:20, inlined from ‘DP::Swipe::ARCH_AVX2::Matrix::Matrix(int, int) [with Sv = int]’ at /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/full_matrix.h:66:12, inlined from ‘std::__cxx11::list DP::Swipe::ARCH_AVX2::swipe(It, It, std::atomic*, Cbs, DP::TargetVec&, DP::Params&) [with Sv = int; Cbs = DP::NoCBS; It = StringSetBase::ConstIterator; Cfg = SwipeConfig, int, DummyIdMask >]’ at /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/full_swipe.h:160:9: /usr/include/c++/14/bits/stl_algobase.h:952:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 952 | *__first = __tmp; | ~~~~~~~~~^~~~~~~ In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’, inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:998:21, inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:1029:20, inlined from ‘DP::Swipe::ARCH_AVX2::Matrix::Matrix(int, int) [with Sv = int]’ at /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/full_matrix.h:66:12, inlined from ‘std::__cxx11::list DP::Swipe::ARCH_AVX2::swipe(It, It, std::atomic*, Cbs, DP::TargetVec&, DP::Params&) [with Sv = int; Cbs = DP::NoCBS; It = StringSetBase::ConstIterator; Cfg = SwipeConfig, int, DummyIdMask >]’ at /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/full_swipe.h:160:9: /usr/include/c++/14/bits/stl_algobase.h:952:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 952 | *__first = __tmp; | ~~~~~~~~~^~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-unknown-warning-option’ may have been intended to silence earlier diagnostics In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’, inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:998:21, inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:1029:20, inlined from ‘DP::Swipe::ARCH_SSE4_1::Matrix::Matrix(int, int) [with Sv = int]’ at /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/full_matrix.h:66:12, inlined from ‘std::__cxx11::list DP::Swipe::ARCH_SSE4_1::swipe(It, It, std::atomic*, Cbs, DP::TargetVec&, DP::Params&) [with Sv = int; Cbs = DP::NoCBS; It = StringSetBase::ConstIterator; Cfg = SwipeConfig, int, DummyIdMask >]’ at /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/full_swipe.h:160:9: /usr/include/c++/14/bits/stl_algobase.h:952:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 952 | *__first = __tmp; | ~~~~~~~~~^~~~~~~ In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’, inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:998:21, inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:1029:20, inlined from ‘DP::Swipe::ARCH_SSE4_1::Matrix::Matrix(int, int) [with Sv = int]’ at /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/full_matrix.h:66:12, inlined from ‘std::__cxx11::list DP::Swipe::ARCH_SSE4_1::swipe(It, It, std::atomic*, Cbs, DP::TargetVec&, DP::Params&) [with Sv = int; Cbs = DP::NoCBS; It = StringSetBase::ConstIterator; Cfg = SwipeConfig, int, DummyIdMask >]’ at /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/full_swipe.h:160:9: /usr/include/c++/14/bits/stl_algobase.h:952:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 952 | *__first = __tmp; | ~~~~~~~~~^~~~~~~ make[3]: Leaving directory '/build/reproducible-path/diamond-aligner-2.1.11/obj-x86_64-linux-gnu' [ 14%] Built target arch_generic At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-unknown-warning-option’ may have been intended to silence earlier diagnostics make[3]: Leaving directory '/build/reproducible-path/diamond-aligner-2.1.11/obj-x86_64-linux-gnu' [ 14%] Built target arch_avx2 At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-unknown-warning-option’ may have been intended to silence earlier diagnostics make[3]: Leaving directory '/build/reproducible-path/diamond-aligner-2.1.11/obj-x86_64-linux-gnu' [ 14%] Built target arch_sse4_1 make -f CMakeFiles/diamond.dir/build.make CMakeFiles/diamond.dir/depend make[3]: Entering directory '/build/reproducible-path/diamond-aligner-2.1.11/obj-x86_64-linux-gnu' cd /build/reproducible-path/diamond-aligner-2.1.11/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/diamond-aligner-2.1.11 /build/reproducible-path/diamond-aligner-2.1.11 /build/reproducible-path/diamond-aligner-2.1.11/obj-x86_64-linux-gnu /build/reproducible-path/diamond-aligner-2.1.11/obj-x86_64-linux-gnu /build/reproducible-path/diamond-aligner-2.1.11/obj-x86_64-linux-gnu/CMakeFiles/diamond.dir/DependInfo.cmake "--color=" make[3]: Leaving directory 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CMakeFiles/diamond.dir/src/output/sam_format.cpp.o -MF CMakeFiles/diamond.dir/src/output/sam_format.cpp.o.d -o CMakeFiles/diamond.dir/src/output/sam_format.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.11/src/output/sam_format.cpp [ 27%] Building CXX object CMakeFiles/diamond.dir/src/align/align.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_AVX2 -DWITH_SSE4_1 -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.11/src -I/build/reproducible-path/diamond-aligner-2.1.11/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/align/align.cpp.o -MF CMakeFiles/diamond.dir/src/align/align.cpp.o.d -o CMakeFiles/diamond.dir/src/align/align.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.11/src/align/align.cpp In file included from /build/reproducible-path/diamond-aligner-2.1.11/src/output/output.h:28, from /build/reproducible-path/diamond-aligner-2.1.11/src/basic/hssp.cpp:23: /build/reproducible-path/diamond-aligner-2.1.11/src/basic/match.h: In constructor ‘Hsp::Hsp(const ApproxHsp&, Loc, Loc)’: /build/reproducible-path/diamond-aligner-2.1.11/src/basic/match.h:270:73: warning: ‘Hsp::subject_range’ will be initialized after [-Wreorder] 270 | Interval query_source_range, query_range, subject_source_range, subject_range; | ^~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.11/src/basic/match.h:270:51: warning: ‘Interval Hsp::subject_source_range’ [-Wreorder] 270 | Interval query_source_range, query_range, subject_source_range, subject_range; | ^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.11/src/basic/hssp.cpp:335:1: warning: when initialized here [-Wreorder] 335 | Hsp::Hsp(const ApproxHsp& h, Loc qlen, Loc tlen) : | ^~~ [ 27%] Building CXX object CMakeFiles/diamond.dir/src/search/setup.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_AVX2 -DWITH_SSE4_1 -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.11/src -I/build/reproducible-path/diamond-aligner-2.1.11/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/search/setup.cpp.o -MF 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CMakeFiles/diamond.dir/src/data/seed_set.cpp.o.d -o CMakeFiles/diamond.dir/src/data/seed_set.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.11/src/data/seed_set.cpp At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-unknown-warning-option’ may have been intended to silence earlier diagnostics [ 29%] Building CXX object CMakeFiles/diamond.dir/src/util/simd.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_AVX2 -DWITH_SSE4_1 -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.11/src -I/build/reproducible-path/diamond-aligner-2.1.11/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy 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CMakeFiles/diamond.dir/src/util/parallel/multiprocessing.cpp.o -MF CMakeFiles/diamond.dir/src/util/parallel/multiprocessing.cpp.o.d -o CMakeFiles/diamond.dir/src/util/parallel/multiprocessing.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.11/src/util/parallel/multiprocessing.cpp [ 56%] Building CXX object CMakeFiles/diamond.dir/src/tools/benchmark_io.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_AVX2 -DWITH_SSE4_1 -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.11/src -I/build/reproducible-path/diamond-aligner-2.1.11/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 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-O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/lib/alp/njn_dynprogproblim.cpp.o -MF CMakeFiles/diamond.dir/src/lib/alp/njn_dynprogproblim.cpp.o.d -o CMakeFiles/diamond.dir/src/lib/alp/njn_dynprogproblim.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.11/src/lib/alp/njn_dynprogproblim.cpp In file included from /build/reproducible-path/diamond-aligner-2.1.11/src/lib/alp/njn_dynprogproblim.hpp:39, from /build/reproducible-path/diamond-aligner-2.1.11/src/lib/alp/njn_dynprogproblim.cpp:37: /build/reproducible-path/diamond-aligner-2.1.11/src/lib/alp/njn_dynprogprob.hpp:110:37: warning: ‘virtual Njn::DynProgProb& Njn::DynProgProb::operator=(const Njn::DynProgProb&)’ was hidden [-Woverloaded-virtual=] 110 | virtual inline DynProgProb &operator= (const DynProgProb &dynProgProb_) | ^~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.11/src/lib/alp/njn_dynprogproblim.hpp:90:40: note: by ‘virtual Njn::DynProgProbLim& Njn::DynProgProbLim::operator=(const Njn::DynProgProbLim&)’ 90 | virtual inline DynProgProbLim &operator= (const DynProgProbLim &dynProgProbLim_) | ^~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.11/src/lib/alp/njn_dynprogprob.hpp:124:22: warning: ‘virtual void Njn::DynProgProb::copy(size_t, const double* const*, size_t, long int, long int, long int, long int (*)(long int, size_t), size_t, const double*)’ was hidden [-Woverloaded-virtual=] 124 | virtual void copy ( | ^~~~ /build/reproducible-path/diamond-aligner-2.1.11/src/lib/alp/njn_dynprogproblim.hpp:101:29: note: by ‘Njn::DynProgProbLim::copy’ 101 | virtual inline void copy ( | ^~~~ /build/reproducible-path/diamond-aligner-2.1.11/src/lib/alp/njn_dynprogprob.hpp:116:29: warning: ‘virtual void Njn::DynProgProb::copy(const Njn::DynProgProb&)’ was hidden [-Woverloaded-virtual=] 116 | virtual inline void copy (const DynProgProb &dynProgProb_) | ^~~~ /build/reproducible-path/diamond-aligner-2.1.11/src/lib/alp/njn_dynprogproblim.hpp:101:29: note: by ‘Njn::DynProgProbLim::copy’ 101 | virtual 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-DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/lib/alp/njn_localmaxstatmatrix.cpp.o -MF CMakeFiles/diamond.dir/src/lib/alp/njn_localmaxstatmatrix.cpp.o.d -o CMakeFiles/diamond.dir/src/lib/alp/njn_localmaxstatmatrix.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.11/src/lib/alp/njn_localmaxstatmatrix.cpp [ 60%] Building CXX object CMakeFiles/diamond.dir/src/lib/alp/njn_localmaxstatutil.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_AVX2 -DWITH_SSE4_1 -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.11/src -I/build/reproducible-path/diamond-aligner-2.1.11/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized 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-Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/lib/alp/sls_alignment_evaluer.cpp.o -MF CMakeFiles/diamond.dir/src/lib/alp/sls_alignment_evaluer.cpp.o.d -o CMakeFiles/diamond.dir/src/lib/alp/sls_alignment_evaluer.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.11/src/lib/alp/sls_alignment_evaluer.cpp [ 61%] Building CXX object CMakeFiles/diamond.dir/src/lib/alp/njn_random.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_AVX2 -DWITH_SSE4_1 -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.11/src -I/build/reproducible-path/diamond-aligner-2.1.11/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/lib/alp/njn_random.cpp.o -MF CMakeFiles/diamond.dir/src/lib/alp/njn_random.cpp.o.d -o CMakeFiles/diamond.dir/src/lib/alp/njn_random.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.11/src/lib/alp/njn_random.cpp [ 62%] Building CXX object CMakeFiles/diamond.dir/src/lib/alp/sls_alp.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_AVX2 -DWITH_SSE4_1 -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.11/src -I/build/reproducible-path/diamond-aligner-2.1.11/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/lib/alp/sls_alp.cpp.o -MF CMakeFiles/diamond.dir/src/lib/alp/sls_alp.cpp.o.d -o CMakeFiles/diamond.dir/src/lib/alp/sls_alp.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.11/src/lib/alp/sls_alp.cpp In file included from /build/reproducible-path/diamond-aligner-2.1.11/src/lib/alp/njn_dynprogproblim.hpp:39, from /build/reproducible-path/diamond-aligner-2.1.11/src/lib/alp/njn_localmaxstat.cpp:39: /build/reproducible-path/diamond-aligner-2.1.11/src/lib/alp/njn_dynprogprob.hpp:110:37: warning: ‘virtual Njn::DynProgProb& Njn::DynProgProb::operator=(const Njn::DynProgProb&)’ was hidden [-Woverloaded-virtual=] 110 | virtual inline DynProgProb &operator= (const DynProgProb &dynProgProb_) | ^~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.11/src/lib/alp/njn_dynprogproblim.hpp:90:40: note: by ‘virtual Njn::DynProgProbLim& Njn::DynProgProbLim::operator=(const Njn::DynProgProbLim&)’ 90 | virtual inline DynProgProbLim &operator= (const DynProgProbLim &dynProgProbLim_) | ^~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.11/src/lib/alp/njn_dynprogprob.hpp:124:22: warning: ‘virtual void Njn::DynProgProb::copy(size_t, const double* const*, size_t, long int, long int, long int, long int (*)(long int, size_t), size_t, const double*)’ was hidden [-Woverloaded-virtual=] 124 | virtual void copy ( | ^~~~ /build/reproducible-path/diamond-aligner-2.1.11/src/lib/alp/njn_dynprogproblim.hpp:101:29: note: by ‘Njn::DynProgProbLim::copy’ 101 | virtual inline void copy ( | ^~~~ /build/reproducible-path/diamond-aligner-2.1.11/src/lib/alp/njn_dynprogprob.hpp:116:29: warning: ‘virtual void Njn::DynProgProb::copy(const Njn::DynProgProb&)’ was hidden [-Woverloaded-virtual=] 116 | virtual inline void copy (const DynProgProb &dynProgProb_) | ^~~~ /build/reproducible-path/diamond-aligner-2.1.11/src/lib/alp/njn_dynprogproblim.hpp:101:29: note: by ‘Njn::DynProgProbLim::copy’ 101 | virtual inline void copy ( | ^~~~ [ 62%] Building CXX object CMakeFiles/diamond.dir/src/lib/alp/sls_alp_data.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_AVX2 -DWITH_SSE4_1 -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.11/src -I/build/reproducible-path/diamond-aligner-2.1.11/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/lib/alp/sls_alp_data.cpp.o -MF CMakeFiles/diamond.dir/src/lib/alp/sls_alp_data.cpp.o.d -o CMakeFiles/diamond.dir/src/lib/alp/sls_alp_data.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.11/src/lib/alp/sls_alp_data.cpp [ 63%] Building CXX object CMakeFiles/diamond.dir/src/lib/alp/sls_alp_regression.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_AVX2 -DWITH_SSE4_1 -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.11/src -I/build/reproducible-path/diamond-aligner-2.1.11/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/lib/alp/sls_alp_regression.cpp.o -MF CMakeFiles/diamond.dir/src/lib/alp/sls_alp_regression.cpp.o.d -o CMakeFiles/diamond.dir/src/lib/alp/sls_alp_regression.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.11/src/lib/alp/sls_alp_regression.cpp cc1plus: note: unrecognized command-line option ‘-Wno-unknown-warning-option’ may have been intended to silence earlier diagnostics [ 64%] Building CXX object CMakeFiles/diamond.dir/src/lib/alp/sls_alp_sim.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_AVX2 -DWITH_SSE4_1 -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.11/src -I/build/reproducible-path/diamond-aligner-2.1.11/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/lib/alp/sls_alp_sim.cpp.o -MF CMakeFiles/diamond.dir/src/lib/alp/sls_alp_sim.cpp.o.d -o CMakeFiles/diamond.dir/src/lib/alp/sls_alp_sim.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.11/src/lib/alp/sls_alp_sim.cpp In file included from /build/reproducible-path/diamond-aligner-2.1.11/src/lib/alp/njn_dynprogproblim.hpp:39, from /build/reproducible-path/diamond-aligner-2.1.11/src/lib/alp/njn_localmaxstatutil.cpp:39: /build/reproducible-path/diamond-aligner-2.1.11/src/lib/alp/njn_dynprogprob.hpp:110:37: warning: ‘virtual Njn::DynProgProb& Njn::DynProgProb::operator=(const Njn::DynProgProb&)’ was hidden [-Woverloaded-virtual=] 110 | virtual inline DynProgProb &operator= (const DynProgProb &dynProgProb_) | ^~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.11/src/lib/alp/njn_dynprogproblim.hpp:90:40: note: by ‘virtual Njn::DynProgProbLim& Njn::DynProgProbLim::operator=(const Njn::DynProgProbLim&)’ 90 | virtual inline DynProgProbLim &operator= (const DynProgProbLim &dynProgProbLim_) | ^~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.11/src/lib/alp/njn_dynprogprob.hpp:124:22: warning: ‘virtual void Njn::DynProgProb::copy(size_t, const double* const*, size_t, long int, long int, long int, long int (*)(long int, size_t), size_t, const double*)’ was hidden [-Woverloaded-virtual=] 124 | virtual void copy ( | ^~~~ /build/reproducible-path/diamond-aligner-2.1.11/src/lib/alp/njn_dynprogproblim.hpp:101:29: note: by ‘Njn::DynProgProbLim::copy’ 101 | virtual inline void copy ( | ^~~~ /build/reproducible-path/diamond-aligner-2.1.11/src/lib/alp/njn_dynprogprob.hpp:116:29: warning: ‘virtual void Njn::DynProgProb::copy(const Njn::DynProgProb&)’ was hidden [-Woverloaded-virtual=] 116 | virtual inline void copy (const DynProgProb &dynProgProb_) | ^~~~ /build/reproducible-path/diamond-aligner-2.1.11/src/lib/alp/njn_dynprogproblim.hpp:101:29: note: by ‘Njn::DynProgProbLim::copy’ 101 | virtual inline void copy ( | ^~~~ [ 64%] Building CXX object CMakeFiles/diamond.dir/src/lib/alp/sls_basic.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_AVX2 -DWITH_SSE4_1 -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.11/src -I/build/reproducible-path/diamond-aligner-2.1.11/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/lib/alp/sls_basic.cpp.o -MF CMakeFiles/diamond.dir/src/lib/alp/sls_basic.cpp.o.d -o CMakeFiles/diamond.dir/src/lib/alp/sls_basic.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.11/src/lib/alp/sls_basic.cpp [ 65%] Building CXX object CMakeFiles/diamond.dir/src/lib/alp/sls_pvalues.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_AVX2 -DWITH_SSE4_1 -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.11/src -I/build/reproducible-path/diamond-aligner-2.1.11/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/lib/alp/sls_pvalues.cpp.o -MF CMakeFiles/diamond.dir/src/lib/alp/sls_pvalues.cpp.o.d -o CMakeFiles/diamond.dir/src/lib/alp/sls_pvalues.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.11/src/lib/alp/sls_pvalues.cpp cc1plus: note: unrecognized command-line option ‘-Wno-unknown-warning-option’ may have been intended to silence earlier diagnostics [ 65%] Building CXX object CMakeFiles/diamond.dir/src/align/global_ranking/global_ranking.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_AVX2 -DWITH_SSE4_1 -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.11/src -I/build/reproducible-path/diamond-aligner-2.1.11/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/align/global_ranking/global_ranking.cpp.o -MF CMakeFiles/diamond.dir/src/align/global_ranking/global_ranking.cpp.o.d -o CMakeFiles/diamond.dir/src/align/global_ranking/global_ranking.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.11/src/align/global_ranking/global_ranking.cpp [ 66%] Building CXX object CMakeFiles/diamond.dir/src/align/global_ranking/extend.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_AVX2 -DWITH_SSE4_1 -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.11/src -I/build/reproducible-path/diamond-aligner-2.1.11/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused 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-Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/tools/rocid.cpp.o -MF CMakeFiles/diamond.dir/src/tools/rocid.cpp.o.d -o CMakeFiles/diamond.dir/src/tools/rocid.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.11/src/tools/rocid.cpp [ 67%] Building CXX object CMakeFiles/diamond.dir/src/lib/blast/blast_seg.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_AVX2 -DWITH_SSE4_1 -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.11/src -I/build/reproducible-path/diamond-aligner-2.1.11/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/lib/blast/blast_seg.cpp.o -MF CMakeFiles/diamond.dir/src/lib/blast/blast_seg.cpp.o.d -o CMakeFiles/diamond.dir/src/lib/blast/blast_seg.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.11/src/lib/blast/blast_seg.cpp [ 67%] Building CXX object CMakeFiles/diamond.dir/src/lib/blast/blast_filter.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_AVX2 -DWITH_SSE4_1 -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.11/src -I/build/reproducible-path/diamond-aligner-2.1.11/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter 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CMakeFiles/arch_sse4_1.dir/src/masking/tantan.cpp.o CMakeFiles/arch_sse4_1.dir/src/dp/scan_diags.cpp.o CMakeFiles/arch_sse4_1.dir/src/dp/ungapped_simd.cpp.o CMakeFiles/arch_sse4_1.dir/src/dp/swipe/anchored_wrapper.cpp.o CMakeFiles/arch_sse4_1.dir/src/dp/score_profile.cpp.o CMakeFiles/arch_avx2.dir/src/dp/swipe/banded_3frame_swipe.cpp.o CMakeFiles/arch_avx2.dir/src/search/stage1_2.cpp.o CMakeFiles/arch_avx2.dir/src/tools/benchmark.cpp.o CMakeFiles/arch_avx2.dir/src/dp/swipe/swipe_wrapper.cpp.o CMakeFiles/arch_avx2.dir/src/masking/tantan.cpp.o CMakeFiles/arch_avx2.dir/src/dp/scan_diags.cpp.o CMakeFiles/arch_avx2.dir/src/dp/ungapped_simd.cpp.o CMakeFiles/arch_avx2.dir/src/dp/swipe/anchored_wrapper.cpp.o CMakeFiles/arch_avx2.dir/src/dp/score_profile.cpp.o -o diamond -lz make[3]: Leaving directory '/build/reproducible-path/diamond-aligner-2.1.11/obj-x86_64-linux-gnu' [100%] Built target diamond make[2]: Leaving directory '/build/reproducible-path/diamond-aligner-2.1.11/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/diamond-aligner-2.1.11/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/diamond-aligner-2.1.11/obj-x86_64-linux-gnu' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/diamond-aligner-2.1.11' cd debian/tests && PATH=/build/reproducible-path/diamond-aligner-2.1.11/obj-x86_64-linux-gnu:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path sh diamond-calls ++ mktemp -d + TESTDIR=/tmp/tmp.A8efFsAV1o + diamond blastp --threads 1 --db test/C.faa.diamond --query test/E.faa --out /tmp/tmp.A8efFsAV1o/E.faa.vs.C.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.11.165 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.A8efFsAV1o #Target sequences to report alignments for: 25 Opening the database... [0.011s] Database: test/C.faa.diamond (type: Diamond database, sequences: 109, letters: 51213) Block size = 2000000000 Opening the input file... [0.01s] Opening the output file... [0s] Loading query sequences... [0.001s] Masking queries... [0.099s] Algorithm: Double-indexed Building query histograms... [0.164s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0.061s] Initializing temporary storage... [0.004s] Building reference histograms... [0.109s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.052s] Building query seed array... [0.033s] Computing hash join... [0.024s] Masking low complexity seeds... [0.018s] Searching alignments... [0.049s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.067s] Building query seed array... [0.051s] Computing hash join... [0.022s] Masking low complexity seeds... [0.021s] Searching alignments... [0.041s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.057s] Building query seed array... [0.046s] Computing hash join... [0.017s] Masking low complexity seeds... [0.022s] Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.054s] Building query seed array... [0.035s] Computing hash join... [0.014s] Masking low complexity seeds... [0.014s] Searching alignments... [0.048s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.063s] Building query seed array... [0.045s] Computing hash join... [0.013s] Masking low complexity seeds... [0.029s] Searching alignments... [0.038s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.043s] Building query seed array... [0.043s] Computing hash join... [0.019s] Masking low complexity seeds... [0.038s] Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.088s] Building query seed array... [0.061s] Computing hash join... [0.026s] Masking low complexity seeds... [0.05s] Searching alignments... [0.035s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.028s] Building query seed array... [0.065s] Computing hash join... [0.017s] Masking low complexity seeds... [0.027s] Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.046s] Building query seed array... [0.039s] Computing hash join... [0.031s] Masking low complexity seeds... [0.028s] Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.083s] Building query seed array... [0.042s] Computing hash join... [0.037s] Masking low complexity seeds... [0.023s] Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.045s] Building query seed array... [0.043s] Computing hash join... [0.027s] Masking low complexity seeds... [0.016s] Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.074s] Building query seed array... [0.045s] Computing hash join... [0.016s] Masking low complexity seeds... [0.032s] Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.038s] Building query seed array... [0.029s] Computing hash join... [0.026s] Masking low complexity seeds... [0.018s] Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.042s] Building query seed array... [0.065s] Computing hash join... [0.019s] Masking low complexity seeds... [0.031s] Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.044s] Building query seed array... [0.051s] Computing hash join... [0.026s] Masking low complexity seeds... [0.026s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.034s] Building query seed array... [0.031s] Computing hash join... [0.022s] Masking low complexity seeds... [0.008s] Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.031s] Building query seed array... [0.046s] Computing hash join... [0.011s] Masking low complexity seeds... [0.01s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.047s] Building query seed array... [0.053s] Computing hash join... [0.028s] Masking low complexity seeds... [0.026s] Searching alignments... [0.032s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.019s] Building query seed array... [0.074s] Computing hash join... [0.007s] Masking low complexity seeds... [0.012s] Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.047s] Building query seed array... [0.031s] Computing hash join... [0.014s] Masking low complexity seeds... [0.024s] Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.038s] Building query seed array... [0.059s] Computing hash join... [0.022s] Masking low complexity seeds... [0.023s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.043s] Building query seed array... [0.037s] Computing hash join... [0.028s] Masking low complexity seeds... [0.019s] Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.036s] Building query seed array... [0.048s] Computing hash join... [0.037s] Masking low complexity seeds... [0.023s] Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.051s] Building query seed array... [0.051s] Computing hash join... [0.018s] Masking low complexity seeds... [0.023s] Searching alignments... [0.024s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.035s] Building query seed array... [0.051s] Computing hash join... [0.016s] Masking low complexity seeds... [0.032s] Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.044s] Building query seed array... [0.051s] Computing hash join... [0.017s] Masking low complexity seeds... [0.017s] Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.039s] Building query seed array... [0.067s] Computing hash join... [0.018s] Masking low complexity seeds... [0.019s] Searching alignments... [0.036s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.048s] Building query seed array... [0.037s] Computing hash join... [0.03s] Masking low complexity seeds... [0.027s] Searching alignments... [0.043s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.043s] Building query seed array... [0.043s] Computing hash join... [0.022s] Masking low complexity seeds... [0.015s] Searching alignments... [0.031s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.047s] Building query seed array... [0.038s] Computing hash join... [0.021s] Masking low complexity seeds... [0.015s] Searching alignments... [0.025s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.037s] Building query seed array... [0.033s] Computing hash join... [0.033s] Masking low complexity seeds... [0.019s] Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.033s] Building query seed array... [0.029s] Computing hash join... [0.058s] Masking low complexity seeds... [0.027s] Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.035s] Building query seed array... [0.04s] Computing hash join... [0.024s] Masking low complexity seeds... [0.01s] Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.042s] Building query seed array... [0.048s] Computing hash join... [0.025s] Masking low complexity seeds... [0.019s] Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.043s] Building query seed array... [0.042s] Computing hash join... [0.027s] Masking low complexity seeds... [0.019s] Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.039s] Building query seed array... [0.035s] Computing hash join... [0.014s] Masking low complexity seeds... [0.015s] Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.039s] Building query seed array... [0.035s] Computing hash join... [0.023s] Masking low complexity seeds... [0.029s] Searching alignments... [0.043s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.039s] Building query seed array... [0.039s] Computing hash join... [0.016s] Masking low complexity seeds... [0.017s] Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.058s] Building query seed array... [0.041s] Computing hash join... [0.019s] Masking low complexity seeds... [0.023s] Searching alignments... [0.025s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.043s] Building query seed array... [0.044s] Computing hash join... [0.038s] Masking low complexity seeds... [0.04s] Searching alignments... [0.041s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.054s] Building query seed array... [0.037s] Computing hash join... [0.02s] Masking low complexity seeds... [0.018s] Searching alignments... [0.025s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.061s] Building query seed array... [0.051s] Computing hash join... [0.019s] Masking low complexity seeds... [0.019s] Searching alignments... [0.038s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.055s] Building query seed array... [0.045s] Computing hash join... [0.024s] Masking low complexity seeds... [0.015s] Searching alignments... [0.041s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.047s] Building query seed array... [0.051s] Computing hash join... [0.022s] Masking low complexity seeds... [0.024s] Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.057s] Building query seed array... [0.055s] Computing hash join... [0.018s] Masking low complexity seeds... [0.023s] Searching alignments... [0.046s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.046s] Building query seed array... [0.05s] Computing hash join... [0.018s] Masking low complexity seeds... [0.02s] Searching alignments... [0.033s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.043s] Building query seed array... [0.051s] Computing hash join... [0.025s] Masking low complexity seeds... [0.027s] Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.053s] Building query seed array... [0.047s] Computing hash join... [0.034s] Masking low complexity seeds... [0.031s] Searching alignments... [0.053s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.05s] Building query seed array... [0.042s] Computing hash join... [0.019s] Masking low complexity seeds... [0.015s] Searching alignments... [0.029s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.062s] Building query seed array... [0.041s] Computing hash join... [0.008s] Masking low complexity seeds... [0.014s] Searching alignments... [0.024s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.047s] Building query seed array... [0.041s] Computing hash join... [0.029s] Masking low complexity seeds... [0.023s] Searching alignments... [0.048s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.024s] Building query seed array... [0.019s] Computing hash join... [0.003s] Masking low complexity seeds... [0.016s] Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.021s] Building query seed array... [0.027s] Computing hash join... [0.035s] Masking low complexity seeds... [0.033s] Searching alignments... [0.031s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.054s] Building query seed array... [0.05s] Computing hash join... [0.024s] Masking low complexity seeds... [0.021s] Searching alignments... [0.032s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.051s] Building query seed array... [0.047s] Computing hash join... [0.026s] Masking low complexity seeds... [0.031s] Searching alignments... [0.036s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.024s] Building query seed array... [0.043s] Computing hash join... [0.019s] Masking low complexity seeds... [0.019s] Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.017s] Building query seed array... [0.042s] Computing hash join... [0.013s] Masking low complexity seeds... [0.014s] Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.026s] Building query seed array... [0.053s] Computing hash join... [0.021s] Masking low complexity seeds... [0.022s] Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.043s] Building query seed array... [0.055s] Computing hash join... [0.008s] Masking low complexity seeds... [0.013s] Searching alignments... [0.036s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.051s] Building query seed array... [0.035s] Computing hash join... [0.027s] Masking low complexity seeds... [0.033s] Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.02s] Building query seed array... [0.035s] Computing hash join... [0.02s] Masking low complexity seeds... [0.007s] Searching alignments... [0.048s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.056s] Building query seed array... [0.04s] Computing hash join... [0.019s] Masking low complexity seeds... [0.022s] Searching alignments... [0.029s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.046s] Building query seed array... [0.035s] Computing hash join... [0.022s] Masking low complexity seeds... [0.023s] Searching alignments... [0.038s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.036s] Building query seed array... [0.045s] Computing hash join... [0.029s] Masking low complexity seeds... [0.026s] Searching alignments... [0.032s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... [1.948s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0.001s] Loading query sequences... [0.001s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 13.772s Reported 77 pairwise alignments, 77 HSPs. 72 queries aligned. + diamond blastp --threads 1 --db test/E.faa.diamond --query test/C.faa --out /tmp/tmp.A8efFsAV1o/C.faa.vs.E.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.11.165 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.A8efFsAV1o #Target sequences to report alignments for: 25 Opening the database... [0.014s] Database: test/E.faa.diamond (type: Diamond database, sequences: 72, letters: 54509) Block size = 2000000000 Opening the input file... [0.019s] Opening the output file... [0s] Loading query sequences... [0.011s] Masking queries... [0.089s] Algorithm: Double-indexed Building query histograms... [0.156s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0.046s] Initializing temporary storage... [0.007s] Building reference histograms... [0.143s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.051s] Building query seed array... [0.051s] Computing hash join... [0.021s] Masking low complexity seeds... [0.006s] Searching alignments... [0.041s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.069s] Building query seed array... [0.067s] Computing hash join... [0.031s] Masking low complexity seeds... [0.035s] Searching alignments... [0.045s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.059s] Building query seed array... [0.048s] Computing hash join... [0.028s] Masking low complexity seeds... [0.026s] Searching alignments... [0.039s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.057s] Building query seed array... [0.083s] Computing hash join... [0.023s] Masking low complexity seeds... [0.027s] Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.069s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.035s] Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.061s] Building query seed array... [0.057s] Computing hash join... [0.018s] Masking low complexity seeds... [0.027s] Searching alignments... [0.054s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.04s] Building query seed array... [0.039s] Computing hash join... [0.026s] Masking low complexity seeds... [0.027s] Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.061s] Building query seed array... [0.047s] Computing hash join... [0.014s] Masking low complexity seeds... [0.042s] Searching alignments... [0.043s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.035s] Building query seed array... [0.055s] Computing hash join... [0.026s] Masking low complexity seeds... [0.01s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.041s] Building query seed array... [0.054s] Computing hash join... [0.04s] Masking low complexity seeds... [0.009s] Searching alignments... [0.025s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.039s] Building query seed array... [0.039s] Computing hash join... [0.018s] Masking low complexity seeds... [0.018s] Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.043s] Building query seed array... [0.053s] Computing hash join... [0.016s] Masking low complexity seeds... [0.014s] Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.03s] Building query seed array... [0.022s] Computing hash join... [0.012s] Masking low complexity seeds... [0.01s] Searching alignments... [0.02s] Deallocating memory... [0.001s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.047s] Building query seed array... [0.029s] Computing hash join... [0.015s] Masking low complexity seeds... [0.01s] Searching alignments... [0.035s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.045s] Building query seed array... [0.035s] Computing hash join... [0.015s] Masking low complexity seeds... [0.019s] Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.047s] Building query seed array... [0.067s] Computing hash join... [0.026s] Masking low complexity seeds... [0.015s] Searching alignments... [0.032s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.032s] Building query seed array... [0.05s] Computing hash join... [0.02s] Masking low complexity seeds... [0.025s] Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.062s] Building query seed array... [0.055s] Computing hash join... [0.014s] Masking low complexity seeds... [0.022s] Searching alignments... [0.024s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.043s] Building query seed array... [0.054s] Computing hash join... [0.02s] Masking low complexity seeds... [0.022s] Searching alignments... [0.031s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.046s] Building query seed array... [0.053s] Computing hash join... [0.022s] Masking low complexity seeds... [0.026s] Searching alignments... [0.033s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.046s] Building query seed array... [0.045s] Computing hash join... [0.023s] Masking low complexity seeds... [0.023s] Searching alignments... [0.031s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.045s] Building query seed array... [0.043s] Computing hash join... [0.015s] Masking low complexity seeds... [0.023s] Searching alignments... [0.037s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.046s] Building query seed array... [0.047s] Computing hash join... [0.023s] Masking low complexity seeds... [0.035s] Searching alignments... [0.035s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.061s] Building query seed array... [0.059s] Computing hash join... [0.019s] Masking low complexity seeds... [0.007s] Searching alignments... [0.03s] Deallocating memory... [0.001s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.052s] Building query seed array... [0.047s] Computing hash join... [0.03s] Masking low complexity seeds... [0.022s] Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.027s] Building query seed array... [0.046s] Computing hash join... [0.022s] Masking low complexity seeds... [0.01s] Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.041s] Building query seed array... [0.057s] Computing hash join... [0.013s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.027s] Building query seed array... [0.041s] Computing hash join... [0.008s] Masking low complexity seeds... [0.028s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.042s] Building query seed array... [0.039s] Computing hash join... [0.02s] Masking low complexity seeds... [0.006s] Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.041s] Building query seed array... [0.035s] Computing hash join... [0.027s] Masking low complexity seeds... [0.035s] Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.069s] Building query seed array... [0.047s] Computing hash join... [0.016s] Masking low complexity seeds... [0.034s] Searching alignments... [0.025s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.064s] Building query seed array... [0.08s] Computing hash join... [0.021s] Masking low complexity seeds... [0.047s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.057s] Building query seed array... [0.057s] Computing hash join... [0.027s] Masking low complexity seeds... [0.011s] Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.049s] Building query seed array... [0.027s] Computing hash join... [0.015s] Masking low complexity seeds... [0.047s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.041s] Building query seed array... [0.055s] Computing hash join... [0.041s] Masking low complexity seeds... [0.014s] Searching alignments... [0.045s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.061s] Building query seed array... [0.056s] Computing hash join... [0.042s] Masking low complexity seeds... [0.019s] Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.049s] Building query seed array... [0.039s] Computing hash join... [0.01s] Masking low complexity seeds... [0.015s] Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.05s] Building query seed array... [0.03s] Computing hash join... [0.007s] Masking low complexity seeds... [0.019s] Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.028s] Building query seed array... [0.029s] Computing hash join... [0.018s] Masking low complexity seeds... [0.011s] Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.021s] Building query seed array... [0.048s] Computing hash join... [0.024s] Masking low complexity seeds... [0.023s] Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.048s] Building query seed array... [0.051s] Computing hash join... [0.014s] Masking low complexity seeds... [0.026s] Searching alignments... [0.033s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.049s] Building query seed array... [0.043s] Computing hash join... [0.02s] Masking low complexity seeds... [0.021s] Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.051s] Building query seed array... [0.054s] Computing hash join... [0.027s] Masking low complexity seeds... [0.027s] Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.035s] Building query seed array... [0.074s] Computing hash join... [0.015s] Masking low complexity seeds... [0.017s] Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.037s] Building query seed array... [0.04s] Computing hash join... [0.025s] Masking low complexity seeds... [0.027s] Searching alignments... [0.039s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.053s] Building query seed array... [0.046s] Computing hash join... [0.032s] Masking low complexity seeds... [0.023s] Searching alignments... [0.035s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.025s] Building query seed array... [0.022s] Computing hash join... [0.021s] Masking low complexity seeds... [0.018s] Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.052s] Building query seed array... [0.044s] Computing hash join... [0.028s] Masking low complexity seeds... [0.018s] Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.037s] Building query seed array... [0.044s] Computing hash join... [0.026s] Masking low complexity seeds... [0.024s] Searching alignments... [0.048s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.045s] Building query seed array... [0.051s] Computing hash join... [0.019s] Masking low complexity seeds... [0.034s] Searching alignments... [0.029s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.03s] Building query seed array... [0.039s] Computing hash join... [0.022s] Masking low complexity seeds... [0.014s] Searching alignments... [0.031s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.038s] Building query seed array... [0.033s] Computing hash join... [0.017s] Masking low complexity seeds... [0.008s] Searching alignments... [0.025s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.084s] Building query seed array... [0.056s] Computing hash join... [0.031s] Masking low complexity seeds... [0.023s] Searching alignments... [0.046s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.021s] Building query seed array... [0.031s] Computing hash join... [0.009s] Masking low complexity seeds... [0.026s] Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.041s] Building query seed array... [0.025s] Computing hash join... [0.019s] Masking low complexity seeds... [0.011s] Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.031s] Building query seed array... [0.025s] Computing hash join... [0.067s] Masking low complexity seeds... [0.051s] Searching alignments... [0.036s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.045s] Building query seed array... [0.065s] Computing hash join... [0.024s] Masking low complexity seeds... [0.025s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.039s] Building query seed array... [0.099s] Computing hash join... [0.013s] Masking low complexity seeds... [0.02s] Searching alignments... [0.041s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.047s] Building query seed array... [0.061s] Computing hash join... [0.016s] Masking low complexity seeds... [0.048s] Searching alignments... [0.039s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.044s] Building query seed array... [0.049s] Computing hash join... [0.021s] Masking low complexity seeds... [0.019s] Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.045s] Building query seed array... [0.075s] Computing hash join... [0.021s] Masking low complexity seeds... [0.021s] Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.035s] Building query seed array... [0.073s] Computing hash join... [0.015s] Masking low complexity seeds... [0.017s] Searching alignments... [0.037s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.061s] Building query seed array... [0.04s] Computing hash join... [0.013s] Masking low complexity seeds... [0.015s] Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.068s] Building query seed array... [0.082s] Computing hash join... [0.083s] Masking low complexity seeds... [0.016s] Searching alignments... [0.021s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... [0.386s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0.006s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0.007s] Closing the database... [0s] Cleaning up... [0s] Total time = 12.689s Reported 41 pairwise alignments, 41 HSPs. 15 queries aligned. + diamond blastp --threads 1 --db test/C.faa.diamond --query test/L.faa --out /tmp/tmp.A8efFsAV1o/L.faa.vs.C.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.11.165 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.A8efFsAV1o #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/C.faa.diamond (type: Diamond database, sequences: 109, letters: 51213) Block size = 2000000000 Opening the input file... [0.008s] Opening the output file... [0s] Loading query sequences... [0s] Masking queries... [0.041s] Algorithm: Double-indexed Building query histograms... [0.239s] Seeking in database... [0s] Loading reference sequences... [0.001s] Masking reference... [0.047s] Initializing temporary storage... [0.01s] Building reference histograms... [0.149s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.055s] Building query seed array... [0.046s] Computing hash join... [0.033s] Masking low complexity seeds... [0.03s] Searching alignments... [0.051s] Deallocating memory... [0.006s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.079s] Building query seed array... [0.067s] Computing hash join... [0.023s] Masking low complexity seeds... [0.023s] Searching alignments... [0.032s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.049s] Building query seed array... [0.066s] Computing hash join... [0.022s] Masking low complexity seeds... [0.015s] Searching alignments... [0.024s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.049s] Building query seed array... [0.083s] Computing hash join... [0.019s] Masking low complexity seeds... [0.023s] Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.095s] Building query seed array... [0.041s] Computing hash join... [0.023s] Masking low complexity seeds... [0.021s] Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.055s] Building query seed array... [0.054s] Computing hash join... [0.018s] Masking low complexity seeds... [0.023s] Searching alignments... [0.024s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.043s] Building query seed array... [0.026s] Computing hash join... [0.019s] Masking low complexity seeds... [0.018s] Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.039s] Building query seed array... [0.039s] Computing hash join... [0.05s] Masking low complexity seeds... [0.019s] Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.031s] Building query seed array... [0.078s] Computing hash join... [0.034s] Masking low complexity seeds... [0.024s] Searching alignments... [0.098s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.044s] Building query seed array... [0.041s] Computing hash join... [0.024s] Masking low complexity seeds... [0.023s] Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.05s] Building query seed array... [0.055s] Computing hash join... [0.027s] Masking low complexity seeds... [0.027s] Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.065s] Building query seed array... [0.059s] Computing hash join... [0.023s] Masking low complexity seeds... [0.039s] Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.039s] Building query seed array... [0.04s] Computing hash join... [0.029s] Masking low complexity seeds... [0.023s] Searching alignments... [0.07s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.081s] Building query seed array... [0.055s] Computing hash join... [0.023s] Masking low complexity seeds... [0.027s] Searching alignments... [0.038s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.059s] Building query seed array... [0.05s] Computing hash join... [0.031s] Masking low complexity seeds... [0.019s] Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.052s] Building query seed array... [0.047s] Computing hash join... [0.019s] Masking low complexity seeds... [0.023s] Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.078s] Building query seed array... [0.074s] Computing hash join... [0.017s] Masking low complexity seeds... [0.018s] Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.057s] Building query seed array... [0.047s] Computing hash join... [0.028s] Masking low complexity seeds... [0.037s] Searching alignments... [0.041s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.063s] Building query seed array... [0.067s] Computing hash join... [0.023s] Masking low complexity seeds... [0.045s] Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.059s] Building query seed array... [0.05s] Computing hash join... [0.046s] Masking low complexity seeds... [0.043s] Searching alignments... [0.042s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.029s] Building query seed array... [0.031s] Computing hash join... [0.055s] Masking low complexity seeds... [0.031s] Searching alignments... [0.046s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.052s] Building query seed array... [0.034s] Computing hash join... [0.022s] Masking low complexity seeds... [0.031s] Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.065s] Building query seed array... [0.048s] Computing hash join... [0.022s] Masking low complexity seeds... [0.031s] Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.06s] Building query seed array... [0.046s] Computing hash join... [0.034s] Masking low complexity seeds... [0.027s] Searching alignments... [0.024s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.055s] Building query seed array... [0.036s] Computing hash join... [0.03s] Masking low complexity seeds... [0.031s] Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.064s] Building query seed array... [0.046s] Computing hash join... [0.021s] Masking low complexity seeds... [0.024s] Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.063s] Building query seed array... [0.062s] Computing hash join... [0.05s] Masking low complexity seeds... [0.025s] Searching alignments... [0.06s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.073s] Building query seed array... [0.052s] Computing hash join... [0.022s] Masking low complexity seeds... [0.027s] Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.071s] Building query seed array... [0.078s] Computing hash join... [0.038s] Masking low complexity seeds... [0.027s] Searching alignments... [0.041s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.066s] Building query seed array... [0.056s] Computing hash join... [0.03s] Masking low complexity seeds... [0.039s] Searching alignments... [0.042s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.061s] Building query seed array... [0.052s] Computing hash join... [0.026s] Masking low complexity seeds... [0.031s] Searching alignments... [0.041s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.065s] Building query seed array... [0.052s] Computing hash join... [0.019s] Masking low complexity seeds... [0.057s] Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.024s] Building query seed array... [0.067s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.026s] Building query seed array... [0.039s] Computing hash join... [0.023s] Masking low complexity seeds... [0.019s] Searching alignments... [0.065s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.081s] Building query seed array... [0.032s] Computing hash join... [0.03s] Masking low complexity seeds... [0.038s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.054s] Building query seed array... [0.034s] Computing hash join... [0.034s] Masking low complexity seeds... [0.043s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.094s] Building query seed array... [0.058s] Computing hash join... [0.019s] Masking low complexity seeds... [0.039s] Searching alignments... [0.049s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.072s] Building query seed array... [0.049s] Computing hash join... [0.015s] Masking low complexity seeds... [0.046s] Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.056s] Building query seed array... [0.042s] Computing hash join... [0.034s] Masking low complexity seeds... [0.033s] Searching alignments... [0.051s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.04s] Building query seed array... [0.086s] Computing hash join... [0.038s] Masking low complexity seeds... [0.016s] Searching alignments... [0.044s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.059s] Building query seed array... [0.039s] Computing hash join... [0.034s] Masking low complexity seeds... [0.039s] Searching alignments... [0.044s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.074s] Building query seed array... [0.036s] Computing hash join... [0.03s] Masking low complexity seeds... [0.023s] Searching alignments... [0.044s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.059s] Building query seed array... [0.024s] Computing hash join... [0.033s] Masking low complexity seeds... [0.032s] Searching alignments... [0.032s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.07s] Building query seed array... [0.053s] Computing hash join... [0.012s] Masking low complexity seeds... [0.016s] Searching alignments... [0.051s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.07s] Building query seed array... [0.079s] Computing hash join... [0.018s] Masking low complexity seeds... [0.044s] Searching alignments... [0.057s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.077s] Building query seed array... [0.052s] Computing hash join... [0.019s] Masking low complexity seeds... [0.043s] Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.068s] Building query seed array... [0.048s] Computing hash join... [0.015s] Masking low complexity seeds... [0.034s] Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.09s] Building query seed array... [0.068s] Computing hash join... [0.014s] Masking low complexity seeds... [0.015s] Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.042s] Building query seed array... [0.029s] Computing hash join... [0.014s] Masking low complexity seeds... [0.011s] Searching alignments... [0.061s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.077s] Building query seed array... [0.04s] Computing hash join... [0.022s] Masking low complexity seeds... [0.042s] Searching alignments... [0.047s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.041s] Building query seed array... [0.032s] Computing hash join... [0.014s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.043s] Building query seed array... [0.039s] Computing hash join... [0.023s] Masking low complexity seeds... [0.015s] Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.055s] Building query seed array... [0.035s] Computing hash join... [0.017s] Masking low complexity seeds... [0.028s] Searching alignments... [0.029s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.06s] Building query seed array... [0.054s] Computing hash join... [0.014s] Masking low complexity seeds... [0.019s] Searching alignments... [0.036s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.039s] Building query seed array... [0.046s] Computing hash join... [0.015s] Masking low complexity seeds... [0.019s] Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.037s] Building query seed array... [0.043s] Computing hash join... [0.019s] Masking low complexity seeds... [0.021s] Searching alignments... [0.039s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.047s] Building query seed array... [0.035s] Computing hash join... [0.027s] Masking low complexity seeds... [0.03s] Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.058s] Building query seed array... [0.052s] Computing hash join... [0.026s] Masking low complexity seeds... [0.011s] Searching alignments... [0.048s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.045s] Building query seed array... [0.027s] Computing hash join... [0.024s] Masking low complexity seeds... [0.023s] Searching alignments... [0.036s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.037s] Building query seed array... [0.052s] Computing hash join... [0.023s] Masking low complexity seeds... [0.027s] Searching alignments... [0.038s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.054s] Building query seed array... [0.035s] Computing hash join... [0.015s] Masking low complexity seeds... [0.019s] Searching alignments... [0.039s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.058s] Building query seed array... [0.049s] Computing hash join... [0.024s] Masking low complexity seeds... [0.026s] Searching alignments... [0.054s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.049s] Building query seed array... [0.064s] Computing hash join... [0.034s] Masking low complexity seeds... [0.027s] Searching alignments... [0.041s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.029s] Building query seed array... [0.031s] Computing hash join... [0.019s] Masking low complexity seeds... [0.031s] Searching alignments... [0.042s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... [1.111s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0.007s] Loading query sequences... [0s] Closing the input file... [0.005s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 14.991s Reported 64 pairwise alignments, 64 HSPs. 33 queries aligned. + diamond blastp --threads 1 --db test/L.faa.diamond --query test/C.faa --out /tmp/tmp.A8efFsAV1o/C.faa.vs.L.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.11.165 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.A8efFsAV1o #Target sequences to report alignments for: 25 Opening the database... [0.03s] Database: test/L.faa.diamond (type: Diamond database, sequences: 40, letters: 26652) Block size = 2000000000 Opening the input file... [0.006s] Opening the output file... [0.003s] Loading query sequences... [0.011s] Masking queries... [0.043s] Algorithm: Double-indexed Building query histograms... [0.156s] Seeking in database... [0.005s] Loading reference sequences... [0s] Masking reference... [0.05s] Initializing temporary storage... [0.001s] Building reference histograms... [0.106s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.043s] Building query seed array... [0.052s] Computing hash join... [0.017s] Masking low complexity seeds... [0.005s] Searching alignments... [0.036s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.036s] Building query seed array... [0.039s] Computing hash join... [0.023s] Masking low complexity seeds... [0.031s] Searching alignments... [0.037s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.045s] Building query seed array... [0.053s] Computing hash join... [0.029s] Masking low complexity seeds... [0.043s] Searching alignments... [0.042s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.053s] Building query seed array... [0.06s] Computing hash join... [0.041s] Masking low complexity seeds... [0.023s] Searching alignments... [0.035s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.057s] Building query seed array... [0.091s] Computing hash join... [0.04s] Masking low complexity seeds... [0.03s] Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.046s] Building query seed array... [0.07s] Computing hash join... [0.023s] Masking low complexity seeds... [0.043s] Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.042s] Building query seed array... [0.039s] Computing hash join... [0.021s] Masking low complexity seeds... [0.015s] Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.038s] Building query seed array... [0.04s] Computing hash join... [0.045s] Masking low complexity seeds... [0.039s] Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.057s] Building query seed array... [0.04s] Computing hash join... [0.022s] Masking low complexity seeds... [0.023s] Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.05s] Building query seed array... [0.044s] Computing hash join... [0.018s] Masking low complexity seeds... [0.014s] Searching alignments... [0.031s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.046s] Building query seed array... [0.044s] Computing hash join... [0.025s] Masking low complexity seeds... [0.027s] Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.047s] Building query seed array... [0.035s] Computing hash join... [0.023s] Masking low complexity seeds... [0.023s] Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.052s] Building query seed array... [0.047s] Computing hash join... [0.023s] Masking low complexity seeds... [0.023s] Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.054s] Building query seed array... [0.051s] Computing hash join... [0.027s] Masking low complexity seeds... [0.023s] Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.05s] Building query seed array... [0.059s] Computing hash join... [0.031s] Masking low complexity seeds... [0.031s] Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.05s] Building query seed array... [0.059s] Computing hash join... [0.024s] Masking low complexity seeds... [0.026s] Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.053s] Building query seed array... [0.059s] Computing hash join... [0.027s] Masking low complexity seeds... [0.035s] Searching alignments... [0.038s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.055s] Building query seed array... [0.055s] Computing hash join... [0.023s] Masking low complexity seeds... [0.019s] Searching alignments... [0.038s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.054s] Building query seed array... [0.047s] Computing hash join... [0.027s] Masking low complexity seeds... [0.027s] Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.038s] Building query seed array... [0.044s] Computing hash join... [0.022s] Masking low complexity seeds... [0.026s] Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.058s] Building query seed array... [0.049s] Computing hash join... [0.018s] Masking low complexity seeds... [0.023s] Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.049s] Building query seed array... [0.043s] Computing hash join... [0.031s] Masking low complexity seeds... [0.023s] Searching alignments... [0.043s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.046s] Building query seed array... [0.045s] Computing hash join... [0.025s] Masking low complexity seeds... [0.031s] Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.047s] Building query seed array... [0.051s] Computing hash join... [0.027s] Masking low complexity seeds... [0.027s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.042s] Building query seed array... [0.043s] Computing hash join... [0.019s] Masking low complexity seeds... [0.015s] Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.052s] Building query seed array... [0.042s] Computing hash join... [0.015s] Masking low complexity seeds... [0.023s] Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.055s] Building query seed array... [0.039s] Computing hash join... [0.019s] Masking low complexity seeds... [0.026s] Searching alignments... [0.033s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.03s] Building query seed array... [0.018s] Computing hash join... [0.011s] Masking low complexity seeds... [0.031s] Searching alignments... [0.041s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.047s] Building query seed array... [0.027s] Computing hash join... [0.019s] Masking low complexity seeds... [0.023s] Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.056s] Building query seed array... [0.028s] Computing hash join... [0.009s] Masking low complexity seeds... [0.011s] Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.047s] Building query seed array... [0.032s] Computing hash join... [0.018s] Masking low complexity seeds... [0.03s] Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.044s] Building query seed array... [0.027s] Computing hash join... [0.018s] Masking low complexity seeds... [0.011s] Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.049s] Building query seed array... [0.022s] Computing hash join... [0.027s] Masking low complexity seeds... [0.007s] Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.034s] Building query seed array... [0.045s] Computing hash join... [0.018s] Masking low complexity seeds... [0.019s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.084s] Building query seed array... [0.05s] Computing hash join... [0.022s] Masking low complexity seeds... [0.031s] Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.009s] Building query seed array... [0.03s] Computing hash join... [0.011s] Masking low complexity seeds... [0.01s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.021s] Building query seed array... [0.056s] Computing hash join... [0.015s] Masking low complexity seeds... [0.007s] Searching alignments... [0.042s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.046s] Building query seed array... [0.038s] Computing hash join... [0.011s] Masking low complexity seeds... [0.019s] Searching alignments... [0.037s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.048s] Building query seed array... [0.046s] Computing hash join... [0.016s] Masking low complexity seeds... [0.007s] Searching alignments... [0.042s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.035s] Building query seed array... [0.034s] Computing hash join... [0.02s] Masking low complexity seeds... [0.023s] Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.052s] Building query seed array... [0.052s] Computing hash join... [0.026s] Masking low complexity seeds... [0.027s] Searching alignments... [0.038s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.058s] Building query seed array... [0.052s] Computing hash join... [0.022s] Masking low complexity seeds... [0.018s] Searching alignments... [0.031s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.046s] Building query seed array... [0.045s] Computing hash join... [0.024s] Masking low complexity seeds... [0.015s] Searching alignments... [0.024s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.053s] Building query seed array... [0.045s] Computing hash join... [0.024s] Masking low complexity seeds... [0.03s] Searching alignments... [0.042s] Deallocating memory... [0.003s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.072s] Building query seed array... [0.062s] Computing hash join... [0.023s] Masking low complexity seeds... [0.036s] Searching alignments... [0.052s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.058s] Building query seed array... [0.065s] Computing hash join... [0.029s] Masking low complexity seeds... [0.036s] Searching alignments... [0.036s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.085s] Building query seed array... [0.048s] Computing hash join... [0.022s] Masking low complexity seeds... [0.034s] Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.065s] Building query seed array... [0.059s] Computing hash join... [0.041s] Masking low complexity seeds... [0.028s] Searching alignments... [0.038s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.074s] Building query seed array... [0.067s] Computing hash join... [0.017s] Masking low complexity seeds... [0.024s] Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.076s] Building query seed array... [0.085s] Computing hash join... [0.03s] Masking low complexity seeds... [0.018s] Searching alignments... [0.039s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.073s] Building query seed array... [0.097s] Computing hash join... [0.035s] Masking low complexity seeds... [0.071s] Searching alignments... [0.052s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.043s] Building query seed array... [0.02s] Computing hash join... [0.021s] Masking low complexity seeds... [0.004s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.019s] Building query seed array... [0.027s] Computing hash join... [0.019s] Masking low complexity seeds... [0.023s] Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.035s] Building query seed array... [0.038s] Computing hash join... [0.037s] Masking low complexity seeds... [0.021s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.021s] Building query seed array... [0.029s] Computing hash join... [0.023s] Masking low complexity seeds... [0.011s] Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.031s] Building query seed array... [0.027s] Computing hash join... [0.003s] Masking low complexity seeds... [0.007s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.03s] Building query seed array... [0.028s] Computing hash join... [0.015s] Masking low complexity seeds... [0.002s] Searching alignments... [0.052s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.034s] Building query seed array... [0.033s] Computing hash join... [0.023s] Masking low complexity seeds... [0.008s] Searching alignments... [0.048s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.046s] Building query seed array... [0.057s] Computing hash join... [0.012s] Masking low complexity seeds... [0.032s] Searching alignments... [0.048s] Deallocating memory... [0.007s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.049s] Building query seed array... [0.039s] Computing hash join... [0.035s] Masking low complexity seeds... [0.031s] Searching alignments... [0.055s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.048s] Building query seed array... [0.055s] Computing hash join... [0.039s] Masking low complexity seeds... [0.022s] Searching alignments... [0.054s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.041s] Building query seed array... [0.043s] Computing hash join... [0.031s] Masking low complexity seeds... [0.027s] Searching alignments... [0.062s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.045s] Building query seed array... [0.047s] Computing hash join... [0.027s] Masking low complexity seeds... [0.027s] Searching alignments... [0.053s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.025s] Building query seed array... [0.039s] Computing hash join... [0.027s] Masking low complexity seeds... [0.023s] Searching alignments... [0.045s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... [2.248s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0.005s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 14.838s Reported 133 pairwise alignments, 133 HSPs. 109 queries aligned. + diamond blastp --threads 1 --db test/C.faa.diamond --query test/M.faa --out /tmp/tmp.A8efFsAV1o/M.faa.vs.C.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.11.165 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.A8efFsAV1o #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/C.faa.diamond (type: Diamond database, sequences: 109, letters: 51213) Block size = 2000000000 Opening the input file... [0.011s] Opening the output file... [0s] Loading query sequences... [0s] Masking queries... [0.096s] Algorithm: Double-indexed Building query histograms... [0.045s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0.013s] Initializing temporary storage... [0.002s] Building reference histograms... [0.097s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.102s] Building query seed array... [0.048s] Computing hash join... [0.014s] Masking low complexity seeds... [0.02s] Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.076s] Building query seed array... [0.096s] Computing hash join... [0.056s] Masking low complexity seeds... [0.019s] Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.036s] Building query seed array... [0.071s] Computing hash join... [0.011s] Masking low complexity seeds... [0.006s] Searching alignments... [0.051s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.077s] Building query seed array... [0.079s] Computing hash join... [0.029s] Masking low complexity seeds... [0.017s] Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.053s] Building query seed array... [0.051s] Computing hash join... [0.009s] Masking low complexity seeds... [0.009s] Searching alignments... [0.042s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.051s] Building query seed array... [0.031s] Computing hash join... [0.035s] Masking low complexity seeds... [0.034s] Searching alignments... [0.054s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.085s] Building query seed array... [0.027s] Computing hash join... [0.024s] Masking low complexity seeds... [0.01s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.025s] Building query seed array... [0.045s] Computing hash join... [0.019s] Masking low complexity seeds... [0.029s] Searching alignments... [0.024s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.042s] Building query seed array... [0.03s] Computing hash join... [0.024s] Masking low complexity seeds... [0.005s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.032s] Building query seed array... [0.025s] Computing hash join... [0.011s] Masking low complexity seeds... [0.02s] Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.029s] Building query seed array... [0.028s] Computing hash join... [0.022s] Masking low complexity seeds... [0.015s] Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.041s] Building query seed array... [0.039s] Computing hash join... [0.022s] Masking low complexity seeds... [0.016s] Searching alignments... [0.035s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.043s] Building query seed array... [0.05s] Computing hash join... [0.02s] Masking low complexity seeds... [0.019s] Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.039s] Building query seed array... [0.028s] Computing hash join... [0.023s] Masking low complexity seeds... [0.031s] Searching alignments... [0.039s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.049s] Building query seed array... [0.048s] Computing hash join... [0.027s] Masking low complexity seeds... [0.027s] Searching alignments... [0.037s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.055s] Building query seed array... [0.048s] Computing hash join... [0.026s] Masking low complexity seeds... [0.031s] Searching alignments... [0.039s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.047s] Building query seed array... [0.045s] Computing hash join... [0.024s] Masking low complexity seeds... [0.014s] Searching alignments... [0.036s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.042s] Building query seed array... [0.043s] Computing hash join... [0.026s] Masking low complexity seeds... [0.027s] Searching alignments... [0.031s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.047s] Building query seed array... [0.05s] Computing hash join... [0.027s] Masking low complexity seeds... [0.027s] Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.047s] Building query seed array... [0.032s] Computing hash join... [0.022s] Masking low complexity seeds... [0.023s] Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.048s] Building query seed array... [0.05s] Computing hash join... [0.019s] Masking low complexity seeds... [0.019s] Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.058s] Building query seed array... [0.05s] Computing hash join... [0.03s] Masking low complexity seeds... [0.028s] Searching alignments... [0.042s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.057s] Building query seed array... [0.054s] Computing hash join... [0.022s] Masking low complexity seeds... [0.014s] Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.035s] Building query seed array... [0.039s] Computing hash join... [0.02s] Masking low complexity seeds... [0.011s] Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.039s] Building query seed array... [0.042s] Computing hash join... [0.028s] Masking low complexity seeds... [0.022s] Searching alignments... [0.031s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.036s] Building query seed array... [0.055s] Computing hash join... [0.026s] Masking low complexity seeds... [0.003s] Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.037s] Computing hash join... [0.022s] Masking low complexity seeds... [0.014s] Searching alignments... [0.038s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.056s] Building query seed array... [0.054s] Computing hash join... [0.011s] Masking low complexity seeds... [0.036s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.035s] Building query seed array... [0.03s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.036s] Building query seed array... [0.022s] Computing hash join... [0.013s] Masking low complexity seeds... [0.019s] Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.043s] Building query seed array... [0.026s] Computing hash join... [0.017s] Masking low complexity seeds... [0.018s] Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.03s] Building query seed array... [0.026s] Computing hash join... [0.024s] Masking low complexity seeds... [0.014s] Searching alignments... [0.041s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.027s] Building query seed array... [0.023s] Computing hash join... [0.008s] Masking low complexity seeds... [0.017s] Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.038s] Building query seed array... [0.082s] Computing hash join... [0.01s] Masking low complexity seeds... [0.019s] Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.04s] Building query seed array... [0.038s] Computing hash join... [0.008s] Masking low complexity seeds... [0.013s] Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.019s] Building query seed array... [0.015s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.037s] Building query seed array... [0.043s] Computing hash join... [0.015s] Masking low complexity seeds... [0.008s] Searching alignments... [0.025s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.027s] Building query seed array... [0.035s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.041s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.03s] Building query seed array... [0.015s] Computing hash join... [0.019s] Masking low complexity seeds... [0.019s] Searching alignments... [0.033s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.025s] Building query seed array... [0.027s] Computing hash join... [0.015s] Masking low complexity seeds... [0.023s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.021s] Building query seed array... [0.02s] Computing hash join... [0.017s] Masking low complexity seeds... [0.008s] Searching alignments... [0.029s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.025s] Building query seed array... [0.098s] Computing hash join... [0.008s] Masking low complexity seeds... [0.01s] Searching alignments... [0.024s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.048s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.066s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.032s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.036s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.121s] Building query seed array... [0.06s] Computing hash join... [0.018s] Masking low complexity seeds... [0.044s] Searching alignments... [0.131s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.021s] Building query seed array... [0.019s] Computing hash join... [0.011s] Masking low complexity seeds... [0.023s] Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.025s] Building query seed array... [0.031s] Computing hash join... [0.019s] Masking low complexity seeds... [0.031s] Searching alignments... [0.036s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.109s] Building query seed array... [0.039s] Computing hash join... [0.009s] Masking low complexity seeds... [0.017s] Searching alignments... [0.06s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.025s] Building query seed array... [0.023s] Computing hash join... [0.007s] Masking low complexity seeds... [0.011s] Searching alignments... [0.016s] Deallocating memory... [0.006s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.026s] Building query seed array... [0.05s] Computing hash join... [0.012s] Masking low complexity seeds... [0.015s] Searching alignments... [0.075s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.049s] Building query seed array... [0.051s] Computing hash join... [0.019s] Masking low complexity seeds... [0.019s] Searching alignments... [0.072s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.065s] Building query seed array... [0.103s] Computing hash join... [0.023s] Masking low complexity seeds... [0.023s] Searching alignments... [0.056s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.025s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.031s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.027s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.063s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.03s] Building query seed array... [0.035s] Computing hash join... [0.019s] Masking low complexity seeds... [0.011s] Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.057s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.039s] Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.069s] Building query seed array... [0.055s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.03s] Building query seed array... [0.027s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.031s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.033s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.047s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.077s] Building query seed array... [0.04s] Computing hash join... [0.022s] Masking low complexity seeds... [0.055s] Searching alignments... [0.051s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.065s] Building query seed array... [0.028s] Computing hash join... [0.01s] Masking low complexity seeds... [0.024s] Searching alignments... [0.062s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.025s] Building query seed array... [0.101s] Computing hash join... [0.022s] Masking low complexity seeds... [0.081s] Searching alignments... [0.039s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.049s] Building query seed array... [0.031s] Computing hash join... [0.043s] Masking low complexity seeds... [0.007s] Searching alignments... [0.033s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.089s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.119s] Searching alignments... [0.019s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... [1.454s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0.005s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 12.862s Reported 62 pairwise alignments, 62 HSPs. 33 queries aligned. + diamond blastp --threads 1 --db test/M.faa.diamond --query test/C.faa --out /tmp/tmp.A8efFsAV1o/C.faa.vs.M.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.11.165 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.A8efFsAV1o #Target sequences to report alignments for: 25 Opening the database... [0.008s] Database: test/M.faa.diamond (type: Diamond database, sequences: 40, letters: 26963) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0.007s] Masking queries... [0.042s] Algorithm: Double-indexed Building query histograms... [0.056s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0.022s] Initializing temporary storage... [0.002s] Building reference histograms... [0.11s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.039s] Building query seed array... [0.039s] Computing hash join... [0.012s] Masking low complexity seeds... [0.016s] Searching alignments... [0.024s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.039s] Building query seed array... [0.045s] Computing hash join... [0.017s] Masking low complexity seeds... [0.006s] Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.035s] Building query seed array... [0.046s] Computing hash join... [0.009s] Masking low complexity seeds... [0.013s] Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.029s] Building query seed array... [0.036s] Computing hash join... [0.018s] Masking low complexity seeds... [0.009s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.027s] Building query seed array... [0.032s] Computing hash join... [0.014s] Masking low complexity seeds... [0.019s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.036s] Building query seed array... [0.03s] Computing hash join... [0.011s] Masking low complexity seeds... [0.024s] Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.04s] Building query seed array... [0.029s] Computing hash join... [0.012s] Masking low complexity seeds... [0.016s] Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.025s] Building query seed array... [0.028s] Computing hash join... [0.014s] Masking low complexity seeds... [0.012s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.025s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.023s] Building query seed array... [0.031s] Computing hash join... [0.011s] Masking low complexity seeds... [0.003s] Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.03s] Building query seed array... [0.027s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.019s] Building query seed array... [0.017s] Computing hash join... [0.015s] Masking low complexity seeds... [0.012s] Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.027s] Building query seed array... [0.021s] Computing hash join... [0.014s] Masking low complexity seeds... [0.015s] Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.035s] Building query seed array... [0.027s] Computing hash join... [0.031s] Masking low complexity seeds... [0.027s] Searching alignments... [0.038s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.051s] Building query seed array... [0.055s] Computing hash join... [0.031s] Masking low complexity seeds... [0.019s] Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.047s] Building query seed array... [0.043s] Computing hash join... [0.015s] Masking low complexity seeds... [0.023s] Searching alignments... [0.046s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.058s] Building query seed array... [0.039s] Computing hash join... [0.027s] Masking low complexity seeds... [0.026s] Searching alignments... [0.036s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.05s] Building query seed array... [0.042s] Computing hash join... [0.02s] Masking low complexity seeds... [0.019s] Searching alignments... [0.025s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.035s] Building query seed array... [0.056s] Computing hash join... [0.027s] Masking low complexity seeds... [0.03s] Searching alignments... [0.039s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.071s] Building query seed array... [0.059s] Computing hash join... [0.011s] Masking low complexity seeds... [0.003s] Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.033s] Building query seed array... [0.053s] Computing hash join... [0.012s] Masking low complexity seeds... [0.011s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.025s] Building query seed array... [0.06s] Computing hash join... [0.024s] Masking low complexity seeds... [0.023s] Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.03s] Building query seed array... [0.049s] Computing hash join... [0.022s] Masking low complexity seeds... [0.005s] Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.025s] Building query seed array... [0.035s] Computing hash join... [0.013s] Masking low complexity seeds... [0.03s] Searching alignments... [0.042s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.036s] Building query seed array... [0.051s] Computing hash join... [0.022s] Masking low complexity seeds... [0.039s] Searching alignments... [0.042s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.047s] Building query seed array... [0.057s] Computing hash join... [0.013s] Masking low complexity seeds... [0.011s] Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.039s] Computing hash join... [0.008s] Masking low complexity seeds... [0.01s] Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.032s] Building query seed array... [0.026s] Computing hash join... [0.011s] Masking low complexity seeds... [0.003s] Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.028s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.019s] Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.046s] Building query seed array... [0.042s] Computing hash join... [0.011s] Masking low complexity seeds... [0.018s] Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.028s] Building query seed array... [0.037s] Computing hash join... [0.022s] Masking low complexity seeds... [0.023s] Searching alignments... [0.035s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.041s] Building query seed array... [0.039s] Computing hash join... [0.023s] Masking low complexity seeds... [0.035s] Searching alignments... [0.041s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.05s] Building query seed array... [0.055s] Computing hash join... [0.02s] Masking low complexity seeds... [0.019s] Searching alignments... [0.033s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.03s] Building query seed array... [0.023s] Computing hash join... [0.023s] Masking low complexity seeds... [0.035s] Searching alignments... [0.029s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.027s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.008s] Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.027s] Building query seed array... [0.019s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.03s] Building query seed array... [0.043s] Computing hash join... [0.05s] Masking low complexity seeds... [0.003s] Searching alignments... [0.021s] Deallocating memory... [0.003s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.004s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.027s] Building query seed array... [0.023s] Computing hash join... [0.032s] Masking low complexity seeds... [0.018s] Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.035s] Building query seed array... [0.046s] Computing hash join... [0.013s] Masking low complexity seeds... [0.004s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.049s] Building query seed array... [0.042s] Computing hash join... [0.013s] Masking low complexity seeds... [0.019s] Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.016s] Building query seed array... [0.034s] Computing hash join... [0.024s] Masking low complexity seeds... [0.01s] Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.023s] Masking low complexity seeds... [0.025s] Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.031s] Building query seed array... [0.033s] Computing hash join... [0.009s] Masking low complexity seeds... [0.019s] Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.032s] Building query seed array... [0.05s] Computing hash join... [0.011s] Masking low complexity seeds... [0.014s] Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.025s] Building query seed array... [0.034s] Computing hash join... [0.037s] Masking low complexity seeds... [0.009s] Searching alignments... [0.033s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.03s] Building query seed array... [0.025s] Computing hash join... [0.018s] Masking low complexity seeds... [0.009s] Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.052s] Building query seed array... [0.031s] Computing hash join... [0.009s] Masking low complexity seeds... [0.012s] Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.03s] Building query seed array... [0.025s] Computing hash join... [0.018s] Masking low complexity seeds... [0.015s] Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.028s] Building query seed array... [0.032s] Computing hash join... [0.007s] Masking low complexity seeds... [0.023s] Searching alignments... [0.043s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.048s] Building query seed array... [0.025s] Computing hash join... [0.025s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.03s] Building query seed array... [0.044s] Computing hash join... [0.017s] Masking low complexity seeds... [0.011s] Searching alignments... [0.029s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.042s] Building query seed array... [0.044s] Computing hash join... [0.026s] Masking low complexity seeds... [0.023s] Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.041s] Building query seed array... [0.047s] Computing hash join... [0.019s] Masking low complexity seeds... [0.027s] Searching alignments... [0.029s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.046s] Building query seed array... [0.038s] Computing hash join... [0.019s] Masking low complexity seeds... [0.024s] Searching alignments... [0.051s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.061s] Building query seed array... [0.015s] Computing hash join... [0.011s] Masking low complexity seeds... [0.014s] Searching alignments... [0.035s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.05s] Building query seed array... [0.038s] Computing hash join... [0.008s] Masking low complexity seeds... [0.01s] Searching alignments... [0.041s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.06s] Building query seed array... [0.026s] Computing hash join... [0.015s] Masking low complexity seeds... [0.006s] Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.071s] Building query seed array... [0.037s] Computing hash join... [0.021s] Masking low complexity seeds... [0.023s] Searching alignments... [0.051s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.041s] Building query seed array... [0.051s] Computing hash join... [0.011s] Masking low complexity seeds... [0.035s] Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.049s] Building query seed array... [0.049s] Computing hash join... [0.031s] Masking low complexity seeds... [0.011s] Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.021s] Building query seed array... [0.032s] Computing hash join... [0.024s] Masking low complexity seeds... [0.011s] Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.025s] Building query seed array... [0.026s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.028s] Building query seed array... [0.091s] Computing hash join... [0.015s] Masking low complexity seeds... [0.01s] Searching alignments... [0.02s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... [1.489s] Deallocating reference... [0s] Loading reference sequences... [0.009s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 11.206s Reported 131 pairwise alignments, 131 HSPs. 109 queries aligned. + diamond blastp --ignore-warnings --threads 1 --db test/C.faa.diamond --query test/C2.faa --out /tmp/tmp.A8efFsAV1o/C2.faa.vs.C.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.11.165 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.A8efFsAV1o #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/C.faa.diamond (type: Diamond database, sequences: 109, letters: 51213) Block size = 2000000000 Opening the input file... [0.001s] Opening the output file... [0s] Loading query sequences... [0s] Masking queries... [0.057s] Algorithm: Double-indexed Building query histograms... [0.036s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0.079s] Initializing temporary storage... [0.015s] Building reference histograms... [0.076s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.047s] Building query seed array... [0.033s] Computing hash join... [0.007s] Masking low complexity seeds... [0.021s] Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.052s] Building query seed array... [0.026s] Computing hash join... [0.034s] Masking low complexity seeds... [0.035s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.025s] Building query seed array... [0.034s] Computing hash join... [0.02s] Masking low complexity seeds... [0.022s] Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.053s] Building query seed array... [0.018s] Computing hash join... [0.017s] Masking low complexity seeds... [0.022s] Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.058s] Building query seed array... [0.03s] Computing hash join... [0.02s] Masking low complexity seeds... [0.018s] Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.047s] Building query seed array... [0.041s] Computing hash join... [0.032s] Masking low complexity seeds... [0.015s] Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.043s] Building query seed array... [0.027s] Computing hash join... [0.015s] Masking low complexity seeds... [0.019s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.029s] Building query seed array... [0.037s] Computing hash join... [0.009s] Masking low complexity seeds... [0.026s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.032s] Building query seed array... [0.035s] Computing hash join... [0.011s] Masking low complexity seeds... [0.019s] Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.038s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.02s] Building query seed array... [0.028s] Computing hash join... [0.011s] Masking low complexity seeds... [0.018s] Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.042s] Building query seed array... [0.039s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.028s] Building query seed array... [0.031s] Computing hash join... [0.007s] Masking low complexity seeds... [0.015s] Searching alignments... [0.024s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.036s] Building query seed array... [0.035s] Computing hash join... [0.024s] Masking low complexity seeds... [0.018s] Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.038s] Building query seed array... [0.023s] Computing hash join... [0.023s] Masking low complexity seeds... [0.031s] Searching alignments... [0.036s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.032s] Building query seed array... [0.053s] Computing hash join... [0.023s] Masking low complexity seeds... [0.02s] Searching alignments... [0.04s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.041s] Building query seed array... [0.039s] Computing hash join... [0.019s] Masking low complexity seeds... [0.023s] Searching alignments... [0.039s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.043s] Building query seed array... [0.037s] Computing hash join... [0.027s] Masking low complexity seeds... [0.019s] Searching alignments... [0.031s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.053s] Building query seed array... [0.043s] Computing hash join... [0.011s] Masking low complexity seeds... [0.026s] Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.052s] Building query seed array... [0.043s] Computing hash join... [0.011s] Masking low complexity seeds... [0.016s] Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.034s] Building query seed array... [0.029s] Computing hash join... [0.011s] Masking low complexity seeds... [0.025s] Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.022s] Building query seed array... [0.028s] Computing hash join... [0.027s] Masking low complexity seeds... [0.012s] Searching alignments... [0.033s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.047s] Building query seed array... [0.039s] Computing hash join... [0.019s] Masking low complexity seeds... [0.019s] Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.064s] Building query seed array... [0.043s] Computing hash join... [0.024s] Masking low complexity seeds... [0.031s] Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.043s] Building query seed array... [0.031s] Computing hash join... [0.024s] Masking low complexity seeds... [0.017s] Searching alignments... [0.025s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.05s] Building query seed array... [0.035s] Computing hash join... [0.017s] Masking low complexity seeds... [0.012s] Searching alignments... [0.009s] Deallocating memory... [0.009s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.047s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.043s] Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.025s] Building query seed array... [0.043s] Computing hash join... [0.019s] Masking low complexity seeds... [0.011s] Searching alignments... [0.038s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.027s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.037s] Deallocating memory... [0.003s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.018s] Building query seed array... [0.031s] Computing hash join... [0.014s] Masking low complexity seeds... [0.031s] Searching alignments... [0.029s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.035s] Building query seed array... [0.035s] Computing hash join... [0.015s] Masking low complexity seeds... [0.022s] Searching alignments... [0.029s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.027s] Building query seed array... [0.023s] Computing hash join... [0.014s] Masking low complexity seeds... [0.013s] Searching alignments... [0.027s] Deallocating memory... [0.005s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.019s] Searching alignments... [0.045s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.109s] Building query seed array... [0.027s] Computing hash join... [0.006s] Masking low complexity seeds... [0.009s] Searching alignments... [0.049s] Deallocating memory... [0.001s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.027s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.036s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.022s] Masking low complexity seeds... [0.027s] Searching alignments... [0.053s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.036s] Building query seed array... [0.027s] Computing hash join... [0.015s] Masking low complexity seeds... [0.019s] Searching alignments... [0.037s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.026s] Building query seed array... [0.06s] Computing hash join... [0.01s] Masking low complexity seeds... [0.023s] Searching alignments... [0.044s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.036s] Building query seed array... [0.047s] Computing hash join... [0.027s] Masking low complexity seeds... [0.031s] Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.037s] Building query seed array... [0.029s] Computing hash join... [0.019s] Masking low complexity seeds... [0.011s] Searching alignments... [0.035s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.033s] Building query seed array... [0.021s] Computing hash join... [0.011s] Masking low complexity seeds... [0.019s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.046s] Building query seed array... [0.011s] Computing hash join... [0.007s] Masking low complexity seeds... [0.019s] Searching alignments... [0.04s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.027s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.043s] Building query seed array... [0.044s] Computing hash join... [0.011s] Masking low complexity seeds... [0.005s] Searching alignments... [0.042s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.032s] Building query seed array... [0.031s] Computing hash join... [0.011s] Masking low complexity seeds... [0.019s] Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.036s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.005s] Searching alignments... [0.058s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.03s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.019s] Searching alignments... [0.041s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.036s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.012s] Deallocating memory... [0.005s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.028s] Building query seed array... [0.019s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.043s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.032s] Building query seed array... [0.03s] Computing hash join... [0.013s] Masking low complexity seeds... [0.009s] Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.043s] Computing hash join... [0.019s] Masking low complexity seeds... [0.015s] Searching alignments... [0.036s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.019s] Building query seed array... [0.011s] Computing hash join... [0.015s] Masking low complexity seeds... [0.007s] Searching alignments... [0.052s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.023s] Building query seed array... [0.039s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.039s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.039s] Building query seed array... [0.031s] Computing hash join... [0.023s] Masking low complexity seeds... [0.019s] Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.03s] Building query seed array... [0.022s] Computing hash join... [0.038s] Masking low complexity seeds... [0.023s] Searching alignments... [0.035s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.069s] Building query seed array... [0.047s] Computing hash join... [0.023s] Masking low complexity seeds... [0.015s] Searching alignments... [0.066s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.041s] Building query seed array... [0.023s] Computing hash join... [0.043s] Masking low complexity seeds... [0.023s] Searching alignments... [0.038s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.029s] Building query seed array... [0.067s] Computing hash join... [0.028s] Masking low complexity seeds... [0.013s] Searching alignments... [0.046s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.063s] Building query seed array... [0.025s] Computing hash join... [0.009s] Masking low complexity seeds... [0.03s] Searching alignments... [0.029s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.061s] Building query seed array... [0.043s] Computing hash join... [0.019s] Masking low complexity seeds... [0.015s] Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.027s] Building query seed array... [0.053s] Computing hash join... [0.031s] Masking low complexity seeds... [0.027s] Searching alignments... [0.042s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.089s] Building query seed array... [0.055s] Computing hash join... [0.02s] Masking low complexity seeds... [0.031s] Searching alignments... [0.057s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.078s] Building query seed array... [0.044s] Computing hash join... [0.034s] Masking low complexity seeds... [0.043s] Searching alignments... [0.042s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.077s] Building query seed array... [0.051s] Computing hash join... [0.022s] Masking low complexity seeds... [0.021s] Searching alignments... [0.008s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... [0.074s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0.011s] Closing the database... [0s] Cleaning up... [0s] Total time = 10.741s Reported 1 pairwise alignments, 1 HSPs. 1 queries aligned. + diamond blastp --threads 1 --db test/C2.faa.diamond --query test/C.faa --out /tmp/tmp.A8efFsAV1o/C.faa.vs.C2.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.11.165 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.A8efFsAV1o #Target sequences to report alignments for: 25 Opening the database... [0.011s] Database: test/C2.faa.diamond (type: Diamond database, sequences: 2, letters: 726) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0.007s] Loading query sequences... [0.001s] Masking queries... [0.058s] Algorithm: Double-indexed Building query histograms... [0.124s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0.011s] Initializing temporary storage... [0.018s] Building reference histograms... [0.024s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.027s] Building query seed array... [0.049s] Computing hash join... [0.022s] Masking low complexity seeds... [0.027s] Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.023s] Building query seed array... [0.063s] Computing hash join... [0.018s] Masking low complexity seeds... [0.012s] Searching alignments... [0.029s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.044s] Building query seed array... [0.03s] Computing hash join... [0.016s] Masking low complexity seeds... [0.011s] Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.054s] Building query seed array... [0.033s] Computing hash join... [0.013s] Masking low complexity seeds... [0.015s] Searching alignments... [0.024s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.034s] Building query seed array... [0.046s] Computing hash join... [0.016s] Masking low complexity seeds... [0.027s] Searching alignments... [0.024s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.045s] Building query seed array... [0.049s] Computing hash join... [0.022s] Masking low complexity seeds... [0.023s] Searching alignments... [0.024s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.037s] Building query seed array... [0.067s] Computing hash join... [0.027s] Masking low complexity seeds... [0.023s] Searching alignments... [0.024s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.05s] Building query seed array... [0.061s] Computing hash join... [0.02s] Masking low complexity seeds... [0.026s] Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.053s] Building query seed array... [0.044s] Computing hash join... [0.02s] Masking low complexity seeds... [0.017s] Searching alignments... [0.032s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.04s] Building query seed array... [0.041s] Computing hash join... [0.034s] Masking low complexity seeds... [0.023s] Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.041s] Building query seed array... [0.039s] Computing hash join... [0.02s] Masking low complexity seeds... [0.023s] Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.037s] Building query seed array... [0.049s] Computing hash join... [0.029s] Masking low complexity seeds... [0.031s] Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.038s] Building query seed array... [0.053s] Computing hash join... [0.033s] Masking low complexity seeds... [0.015s] Searching alignments... [0.039s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.041s] Building query seed array... [0.042s] Computing hash join... [0.025s] Masking low complexity seeds... [0.031s] Searching alignments... [0.032s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.057s] Building query seed array... [0.037s] Computing hash join... [0.022s] Masking low complexity seeds... [0.03s] Searching alignments... [0.035s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.062s] Building query seed array... [0.044s] Computing hash join... [0.022s] Masking low complexity seeds... [0.035s] Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.054s] Building query seed array... [0.06s] Computing hash join... [0.026s] Masking low complexity seeds... [0.027s] Searching alignments... [0.031s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.058s] Building query seed array... [0.049s] Computing hash join... [0.019s] Masking low complexity seeds... [0.009s] Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.039s] Building query seed array... [0.019s] Computing hash join... [0.024s] Masking low complexity seeds... [0.01s] Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.06s] Computing hash join... [0.011s] Masking low complexity seeds... [0.029s] Searching alignments... [0.037s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.107s] Building query seed array... [0.05s] Computing hash join... [0.014s] Masking low complexity seeds... [0.015s] Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.024s] Building query seed array... [0.033s] Computing hash join... [0.016s] Masking low complexity seeds... [0.009s] Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.013s] Building query seed array... [0.031s] Computing hash join... [0.011s] Masking low complexity seeds... [0.024s] Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.029s] Building query seed array... [0.014s] Computing hash join... [0.013s] Masking low complexity seeds... [0.042s] Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.017s] Building query seed array... [0.027s] Computing hash join... [0.007s] Masking low complexity seeds... [0.011s] Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.021s] Building query seed array... [0.04s] Computing hash join... [0.026s] Masking low complexity seeds... [0.011s] Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.015s] Building query seed array... [0.029s] Computing hash join... [0.006s] Masking low complexity seeds... [0.008s] Searching alignments... [0.037s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.027s] Building query seed array... [0.034s] Computing hash join... [0.013s] Masking low complexity seeds... [0.009s] Searching alignments... [0.031s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.027s] Building query seed array... [0.045s] Computing hash join... [0.018s] Masking low complexity seeds... [0.023s] Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.028s] Building query seed array... [0.018s] Computing hash join... [0.016s] Masking low complexity seeds... [0.026s] Searching alignments... [0.035s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.039s] Building query seed array... [0.035s] Computing hash join... [0.011s] Masking low complexity seeds... [0.007s] Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.057s] Building query seed array... [0.037s] Computing hash join... [0.009s] Masking low complexity seeds... [0.011s] Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.045s] Building query seed array... [0.035s] Computing hash join... [0.035s] Masking low complexity seeds... [0.019s] Searching alignments... [0.029s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.033s] Building query seed array... [0.039s] Computing hash join... [0.019s] Masking low complexity seeds... [0.022s] Searching alignments... [0.01s] Deallocating memory... [0.003s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.019s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.063s] Building query seed array... [0.055s] Computing hash join... [0.007s] Masking low complexity seeds... [0.015s] Searching alignments... [0.019s] Deallocating memory... [0.006s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.011s] Building query seed array... [0.022s] Computing hash join... [0.02s] Masking low complexity seeds... [0.035s] Searching alignments... [0.033s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.051s] Building query seed array... [0.043s] Computing hash join... [0.012s] Masking low complexity seeds... [0.027s] Searching alignments... [0.041s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.039s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.044s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.024s] Building query seed array... [0.035s] Computing hash join... [0.015s] Masking low complexity seeds... [0.003s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.013s] Building query seed array... [0.025s] Computing hash join... [0.009s] Masking low complexity seeds... [0.011s] Searching alignments... [0.024s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.019s] Building query seed array... [0.017s] Computing hash join... [0s] Masking low complexity seeds... [0.018s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.012s] Building query seed array... [0.015s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.047s] Building query seed array... [0.023s] Computing hash join... [0.017s] Masking low complexity seeds... [0.006s] Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.033s] Building query seed array... [0.049s] Computing hash join... [0.016s] Masking low complexity seeds... [0.028s] Searching alignments... [0.041s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.037s] Computing hash join... [0.037s] Masking low complexity seeds... [0.009s] Searching alignments... [0.024s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.019s] Building query seed array... [0.037s] Computing hash join... [0.006s] Masking low complexity seeds... [0.023s] Searching alignments... [0.039s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.012s] Building query seed array... [0.015s] Computing hash join... [0.028s] Masking low complexity seeds... [0.062s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.065s] Building query seed array... [0.064s] Computing hash join... [0.051s] Masking low complexity seeds... [0.049s] Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.037s] Building query seed array... [0.047s] Computing hash join... [0.018s] Masking low complexity seeds... [0.027s] Searching alignments... [0.055s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.065s] Building query seed array... [0.084s] Computing hash join... [0.033s] Masking low complexity seeds... [0.017s] Searching alignments... [0.025s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.098s] Building query seed array... [0.055s] Computing hash join... [0.031s] Masking low complexity seeds... [0.035s] Searching alignments... [0.038s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.12s] Building query seed array... [0.084s] Computing hash join... [0.047s] Masking low complexity seeds... [0.069s] Searching alignments... [0.055s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.017s] Building query seed array... [0.031s] Computing hash join... [0.011s] Masking low complexity seeds... [0.014s] Searching alignments... [0.019s] Deallocating memory... [0.008s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.018s] Building query seed array... [0.039s] Computing hash join... [0.035s] Masking low complexity seeds... [0.027s] Searching alignments... [0.059s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.064s] Building query seed array... [0.057s] Computing hash join... [0.021s] Masking low complexity seeds... [0.024s] Searching alignments... [0.055s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.081s] Building query seed array... [0.031s] Computing hash join... [0.026s] Masking low complexity seeds... [0.039s] Searching alignments... [0.05s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.034s] Building query seed array... [0.042s] Computing hash join... [0.011s] Masking low complexity seeds... [0.051s] Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.046s] Building query seed array... [0.043s] Computing hash join... [0.027s] Masking low complexity seeds... [0.035s] Searching alignments... [0.051s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.052s] Building query seed array... [0.031s] Computing hash join... [0.039s] Masking low complexity seeds... [0.027s] Searching alignments... [0.05s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.037s] Building query seed array... [0.039s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.042s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.052s] Building query seed array... [0.044s] Computing hash join... [0.027s] Masking low complexity seeds... [0.035s] Searching alignments... [0.054s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.046s] Building query seed array... [0.058s] Computing hash join... [0.027s] Masking low complexity seeds... [0.03s] Searching alignments... [0.057s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.039s] Building query seed array... [0.035s] Computing hash join... [0.027s] Masking low complexity seeds... [0.023s] Searching alignments... [0.018s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... [0.059s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0.009s] Closing the database... [0s] Cleaning up... [0s] Total time = 11.131s Reported 1 pairwise alignments, 1 HSPs. 1 queries aligned. + diamond blastp --threads 1 --db test/E.faa.diamond --query test/L.faa --out /tmp/tmp.A8efFsAV1o/L.faa.vs.E.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.11.165 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.A8efFsAV1o #Target sequences to report alignments for: 25 Opening the database... [0.006s] Database: test/E.faa.diamond (type: Diamond database, sequences: 72, letters: 54509) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0.003s] Loading query sequences... [0.006s] Masking queries... [0.035s] Algorithm: Double-indexed Building query histograms... [0.074s] Seeking in database... [0s] Loading reference sequences... [0.001s] Masking reference... [0.046s] Initializing temporary storage... [0.011s] Building reference histograms... [0.275s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.069s] Building query seed array... [0.042s] Computing hash join... [0.023s] Masking low complexity seeds... [0.033s] Searching alignments... [0.074s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.049s] Building query seed array... [0.063s] Computing hash join... [0.034s] Masking low complexity seeds... [0.022s] Searching alignments... [0.131s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.062s] Building query seed array... [0.058s] Computing hash join... [0.074s] Masking low complexity seeds... [0.034s] Searching alignments... [0.038s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.079s] Building query seed array... [0.07s] Computing hash join... [0.035s] Masking low complexity seeds... [0.035s] Searching alignments... [0.033s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.07s] Building query seed array... [0.112s] Computing hash join... [0.065s] Masking low complexity seeds... [0.026s] Searching alignments... [0.029s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.112s] Building query seed array... [0.06s] Computing hash join... [0.054s] Masking low complexity seeds... [0.028s] Searching alignments... [0.051s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.084s] Building query seed array... [0.03s] Computing hash join... [0.005s] Masking low complexity seeds... [0.004s] Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.057s] Building query seed array... [0.043s] Computing hash join... [0.019s] Masking low complexity seeds... [0.033s] Searching alignments... [0.039s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.046s] Building query seed array... [0.059s] Computing hash join... [0.027s] Masking low complexity seeds... [0.038s] Searching alignments... [0.025s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.05s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.022s] Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.06s] Building query seed array... [0.147s] Computing hash join... [0.024s] Masking low complexity seeds... [0.037s] Searching alignments... [0.041s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.065s] Building query seed array... [0.089s] Computing hash join... [0.025s] Masking low complexity seeds... [0.007s] Searching alignments... [0.029s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.038s] Building query seed array... [0.003s] Computing hash join... [0.02s] Masking low complexity seeds... [0.027s] Searching alignments... [0.037s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.057s] Building query seed array... [0.08s] Computing hash join... [0.03s] Masking low complexity seeds... [0.047s] Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.031s] Building query seed array... [0.039s] Computing hash join... [0.031s] Masking low complexity seeds... [0.034s] Searching alignments... [0.042s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.055s] Building query seed array... [0.026s] Computing hash join... [0.026s] Masking low complexity seeds... [0.03s] Searching alignments... [0.038s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.07s] Building query seed array... [0.06s] Computing hash join... [0.017s] Masking low complexity seeds... [0.02s] Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.066s] Building query seed array... [0.033s] Computing hash join... [0.026s] Masking low complexity seeds... [0.023s] Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.075s] Building query seed array... [0.055s] Computing hash join... [0.017s] Masking low complexity seeds... [0.023s] Searching alignments... [0.025s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.022s] Building query seed array... [0.075s] Computing hash join... [0.02s] Masking low complexity seeds... [0.028s] Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.067s] Building query seed array... [0.024s] Computing hash join... [0.03s] Masking low complexity seeds... [0.002s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.022s] Building query seed array... [0.034s] Computing hash join... [0.016s] Masking low complexity seeds... [0.01s] Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.029s] Building query seed array... [0.08s] Computing hash join... [0.035s] Masking low complexity seeds... [0.054s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.042s] Building query seed array... [0.048s] Computing hash join... [0.076s] Masking low complexity seeds... [0.037s] Searching alignments... [0.029s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.042s] Building query seed array... [0.039s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.043s] Building query seed array... [0.051s] Computing hash join... [0.006s] Masking low complexity seeds... [0.016s] Searching alignments... [0.042s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.051s] Building query seed array... [0.035s] Computing hash join... [0.019s] Masking low complexity seeds... [0.029s] Searching alignments... [0.048s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.051s] Building query seed array... [0.059s] Computing hash join... [0.023s] Masking low complexity seeds... [0.023s] Searching alignments... [0.047s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.065s] Building query seed array... [0.039s] Computing hash join... [0.015s] Masking low complexity seeds... [0.027s] Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.051s] Building query seed array... [0.055s] Computing hash join... [0.023s] Masking low complexity seeds... [0.023s] Searching alignments... [0.042s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.067s] Building query seed array... [0.055s] Computing hash join... [0.035s] Masking low complexity seeds... [0.031s] Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.023s] Building query seed array... [0.011s] Computing hash join... [0.031s] Masking low complexity seeds... [0.003s] Searching alignments... [0.046s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.071s] Building query seed array... [0.051s] Computing hash join... [0.023s] Masking low complexity seeds... [0.015s] Searching alignments... [0.049s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.046s] Building query seed array... [0.043s] Computing hash join... [0.028s] Masking low complexity seeds... [0.022s] Searching alignments... [0.033s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.051s] Building query seed array... [0.055s] Computing hash join... [0.015s] Masking low complexity seeds... [0.031s] Searching alignments... [0.039s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.055s] Building query seed array... [0.029s] Computing hash join... [0.025s] Masking low complexity seeds... [0.018s] Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.028s] Building query seed array... [0.037s] Computing hash join... [0.016s] Masking low complexity seeds... [0.048s] Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.052s] Building query seed array... [0.047s] Computing hash join... [0.042s] Masking low complexity seeds... [0.013s] Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.083s] Building query seed array... [0.045s] Computing hash join... [0.026s] Masking low complexity seeds... [0.025s] Searching alignments... [0.045s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.091s] Building query seed array... [0.034s] Computing hash join... [0.034s] Masking low complexity seeds... [0.031s] Searching alignments... [0.029s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.096s] Building query seed array... [0.05s] Computing hash join... [0.061s] Masking low complexity seeds... [0.036s] Searching alignments... [0.056s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.078s] Building query seed array... [0.078s] Computing hash join... [0.043s] Masking low complexity seeds... [0.044s] Searching alignments... [0.048s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.109s] Building query seed array... [0.087s] Computing hash join... [0.042s] Masking low complexity seeds... [0.041s] Searching alignments... [0.064s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.079s] Building query seed array... [0.066s] Computing hash join... [0.029s] Masking low complexity seeds... [0.056s] Searching alignments... [0.058s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.047s] Building query seed array... [0.079s] Computing hash join... [0.021s] Masking low complexity seeds... [0.034s] Searching alignments... [0.056s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.074s] Building query seed array... [0.031s] Computing hash join... [0.023s] Masking low complexity seeds... [0.038s] Searching alignments... [0.06s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.085s] Building query seed array... [0.067s] Computing hash join... [0.027s] Masking low complexity seeds... [0.039s] Searching alignments... [0.044s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.051s] Building query seed array... [0.081s] Computing hash join... [0.019s] Masking low complexity seeds... [0.015s] Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.05s] Building query seed array... [0.038s] Computing hash join... [0.021s] Masking low complexity seeds... [0.023s] Searching alignments... [0.029s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.047s] Building query seed array... [0.07s] Computing hash join... [0.02s] Masking low complexity seeds... [0.02s] Searching alignments... [0.054s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.048s] Building query seed array... [0.033s] Computing hash join... [0.026s] Masking low complexity seeds... [0.031s] Searching alignments... [0.033s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.043s] Building query seed array... [0.061s] Computing hash join... [0.025s] Masking low complexity seeds... [0.015s] Searching alignments... [0.051s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.041s] Building query seed array... [0.038s] Computing hash join... [0.031s] Masking low complexity seeds... [0.015s] Searching alignments... [0.054s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.061s] Building query seed array... [0.062s] Computing hash join... [0.019s] Masking low complexity seeds... [0.032s] Searching alignments... [0.063s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.056s] Building query seed array... [0.053s] Computing hash join... [0.022s] Masking low complexity seeds... [0.023s] Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.056s] Building query seed array... [0.065s] Computing hash join... [0.007s] Masking low complexity seeds... [0.01s] Searching alignments... [0.025s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.05s] Building query seed array... [0.048s] Computing hash join... [0.025s] Masking low complexity seeds... [0.023s] Searching alignments... [0.044s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.051s] Building query seed array... [0.049s] Computing hash join... [0.024s] Masking low complexity seeds... [0.015s] Searching alignments... [0.036s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.046s] Building query seed array... [0.042s] Computing hash join... [0.024s] Masking low complexity seeds... [0.03s] Searching alignments... [0.044s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.05s] Building query seed array... [0.052s] Computing hash join... [0.006s] Masking low complexity seeds... [0.015s] Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.039s] Building query seed array... [0.077s] Computing hash join... [0.012s] Masking low complexity seeds... [0.015s] Searching alignments... [0.035s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.059s] Building query seed array... [0.031s] Computing hash join... [0.024s] Masking low complexity seeds... [0.016s] Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.042s] Building query seed array... [0.044s] Computing hash join... [0.027s] Masking low complexity seeds... [0.017s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.064s] Building query seed array... [0.055s] Computing hash join... [0.024s] Masking low complexity seeds... [0.034s] Searching alignments... [0.023s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... [3.539s] Deallocating reference... [0s] Loading reference sequences... [0.01s] Deallocating buffers... [0s] Deallocating queries... [0.007s] Loading query sequences... [0.003s] Closing the input file... [0.003s] Closing the output file... [0.001s] Closing the database... [0.006s] Cleaning up... [0s] Total time = 18.055s Reported 489 pairwise alignments, 489 HSPs. 32 queries aligned. + diamond blastp --threads 1 --db test/L.faa.diamond --query test/E.faa --out /tmp/tmp.A8efFsAV1o/E.faa.vs.L.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.11.165 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.A8efFsAV1o #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/L.faa.diamond (type: Diamond database, sequences: 40, letters: 26652) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0.001s] Masking queries... [0.058s] Algorithm: Double-indexed Building query histograms... [0.212s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0.02s] Initializing temporary storage... [0.002s] Building reference histograms... [0.13s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.056s] Building query seed array... [0.056s] Computing hash join... [0.031s] Masking low complexity seeds... [0.017s] Searching alignments... [0.064s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.037s] Building query seed array... [0.059s] Computing hash join... [0.031s] Masking low complexity seeds... [0.023s] Searching alignments... [0.06s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.07s] Building query seed array... [0.046s] Computing hash join... [0.031s] Masking low complexity seeds... [0.031s] Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.069s] Building query seed array... [0.056s] Computing hash join... [0.014s] Masking low complexity seeds... [0.028s] Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.071s] Building query seed array... [0.045s] Computing hash join... [0.049s] Masking low complexity seeds... [0.029s] Searching alignments... [0.032s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.06s] Building query seed array... [0.071s] Computing hash join... [0.007s] Masking low complexity seeds... [0.031s] Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.069s] Building query seed array... [0.053s] Computing hash join... [0.033s] Masking low complexity seeds... [0.046s] Searching alignments... [0.047s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.084s] Building query seed array... [0.084s] Computing hash join... [0.021s] Masking low complexity seeds... [0.031s] Searching alignments... [0.057s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.086s] Building query seed array... [0.07s] Computing hash join... [0.022s] Masking low complexity seeds... [0.022s] Searching alignments... [0.032s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.031s] Building query seed array... [0.061s] Computing hash join... [0.033s] Masking low complexity seeds... [0.01s] Searching alignments... [0.038s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.047s] Building query seed array... [0.03s] Computing hash join... [0.043s] Masking low complexity seeds... [0.035s] Searching alignments... [0.024s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.042s] Building query seed array... [0.034s] Computing hash join... [0.027s] Masking low complexity seeds... [0.015s] Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.016s] Building query seed array... [0.053s] Computing hash join... [0.016s] Masking low complexity seeds... [0.032s] Searching alignments... [0.025s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.042s] Building query seed array... [0.026s] Computing hash join... [0.019s] Masking low complexity seeds... [0.011s] Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.05s] Building query seed array... [0.059s] Computing hash join... [0.023s] Masking low complexity seeds... [0.029s] Searching alignments... [0.04s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.053s] Building query seed array... [0.038s] Computing hash join... [0.04s] Masking low complexity seeds... [0.023s] Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.057s] Building query seed array... [0.047s] Computing hash join... [0.023s] Masking low complexity seeds... [0.023s] Searching alignments... [0.029s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.048s] Building query seed array... [0.041s] Computing hash join... [0.022s] Masking low complexity seeds... [0.024s] Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.041s] Building query seed array... [0.045s] Computing hash join... [0.013s] Masking low complexity seeds... [0.027s] Searching alignments... [0.036s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.069s] Building query seed array... [0.054s] Computing hash join... [0.04s] Masking low complexity seeds... [0.047s] Searching alignments... [0.036s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.041s] Building query seed array... [0.07s] Computing hash join... [0.021s] Masking low complexity seeds... [0.032s] Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.054s] Building query seed array... [0.069s] Computing hash join... [0.026s] Masking low complexity seeds... [0.025s] Searching alignments... [0.039s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.066s] Building query seed array... [0.047s] Computing hash join... [0.011s] Masking low complexity seeds... [0.023s] Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.064s] Building query seed array... [0.042s] Computing hash join... [0.011s] Masking low complexity seeds... [0.023s] Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.039s] Building query seed array... [0.03s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.041s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.047s] Building query seed array... [0.036s] Computing hash join... [0.023s] Masking low complexity seeds... [0.023s] Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.046s] Building query seed array... [0.051s] Computing hash join... [0.031s] Masking low complexity seeds... [0.013s] Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.057s] Building query seed array... [0.047s] Computing hash join... [0.027s] Masking low complexity seeds... [0.023s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.055s] Building query seed array... [0.043s] Computing hash join... [0.027s] Masking low complexity seeds... [0.015s] Searching alignments... [0.046s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.063s] Building query seed array... [0.045s] Computing hash join... [0.029s] Masking low complexity seeds... [0.027s] Searching alignments... [0.043s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.01s] Building query seed array... [0.056s] Computing hash join... [0.026s] Masking low complexity seeds... [0.019s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.026s] Computing hash join... [0.006s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.02s] Building query seed array... [0.059s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.007s] Building query seed array... [0.06s] Computing hash join... [0s] Masking low complexity seeds... [0.008s] Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.038s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.033s] Building query seed array... [0.065s] Computing hash join... [0.026s] Masking low complexity seeds... [0.016s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.031s] Building query seed array... [0.035s] Computing hash join... [0.006s] Masking low complexity seeds... [0.026s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0.005s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.031s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.051s] Building query seed array... [0.049s] Computing hash join... [0s] Masking low complexity seeds... [0.032s] Searching alignments... [0.051s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.025s] Building query seed array... [0.024s] Computing hash join... [0.018s] Masking low complexity seeds... [0.007s] Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.018s] Building query seed array... [0.031s] Computing hash join... [0s] Masking low complexity seeds... [0.036s] Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.019s] Building query seed array... [0.014s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.04s] Building query seed array... [0.026s] Computing hash join... [0.011s] Masking low complexity seeds... [0.004s] Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.023s] Building query seed array... [0.052s] Computing hash join... [0.017s] Masking low complexity seeds... [0.019s] Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.045s] Building query seed array... [0.027s] Computing hash join... [0.004s] Masking low complexity seeds... [0.018s] Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.017s] Building query seed array... [0.023s] Computing hash join... [0.002s] Masking low complexity seeds... [0.023s] Searching alignments... [0.024s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.006s] Building query seed array... [0.059s] Computing hash join... [0.006s] Masking low complexity seeds... [0.003s] Searching alignments... [0.031s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.012s] Building query seed array... [0.031s] Computing hash join... [0.011s] Masking low complexity seeds... [0.039s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.051s] Building query seed array... [0.016s] Computing hash join... [0.005s] Masking low complexity seeds... [0.005s] Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.053s] Building query seed array... [0.036s] Computing hash join... [0.009s] Masking low complexity seeds... [0.021s] Searching alignments... [0.042s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.027s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.051s] Building query seed array... [0.043s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.047s] Building query seed array... [0.055s] Computing hash join... [0.003s] Masking low complexity seeds... [0.007s] Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.047s] Building query seed array... [0.091s] Computing hash join... [0.003s] Masking low complexity seeds... [0.003s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.043s] Building query seed array... [0.059s] Computing hash join... [0.023s] Masking low complexity seeds... [0.008s] Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.023s] Building query seed array... [0.047s] Computing hash join... [0.015s] Masking low complexity seeds... [0.019s] Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.048s] Building query seed array... [0.038s] Computing hash join... [0.003s] Masking low complexity seeds... [0.004s] Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.063s] Building query seed array... [0.043s] Computing hash join... [0.019s] Masking low complexity seeds... [0.027s] Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.061s] Building query seed array... [0.047s] Computing hash join... [0.023s] Masking low complexity seeds... [0.031s] Searching alignments... [0.046s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.041s] Building query seed array... [0.049s] Computing hash join... [0.013s] Masking low complexity seeds... [0.035s] Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.061s] Building query seed array... [0.053s] Computing hash join... [0.025s] Masking low complexity seeds... [0.019s] Searching alignments... [0.046s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.053s] Building query seed array... [0.035s] Computing hash join... [0.015s] Masking low complexity seeds... [0.023s] Searching alignments... [0.056s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.045s] Building query seed array... [0.042s] Computing hash join... [0.019s] Masking low complexity seeds... [0.023s] Searching alignments... [0.055s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.061s] Building query seed array... [0.047s] Computing hash join... [0.025s] Masking low complexity seeds... [0.018s] Searching alignments... [0.045s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... [3.418s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0.002s] Closing the database... [0s] Cleaning up... [0s] Total time = 15.039s Reported 1173 pairwise alignments, 1173 HSPs. 72 queries aligned. + diamond blastp --threads 1 --db test/E.faa.diamond --query test/M.faa --out /tmp/tmp.A8efFsAV1o/M.faa.vs.E.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.11.165 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.A8efFsAV1o #Target sequences to report alignments for: 25 Opening the database... [0.007s] Database: test/E.faa.diamond (type: Diamond database, sequences: 72, letters: 54509) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0.006s] Masking queries... [0.045s] Algorithm: Double-indexed Building query histograms... [0.095s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0.062s] Initializing temporary storage... [0.013s] Building reference histograms... [0.114s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.05s] Building query seed array... [0.042s] Computing hash join... [0.011s] Masking low complexity seeds... [0.03s] Searching alignments... [0.067s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.051s] Building query seed array... [0.057s] Computing hash join... [0.028s] Masking low complexity seeds... [0.016s] Searching alignments... [0.045s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.085s] Building query seed array... [0.04s] Computing hash join... [0.027s] Masking low complexity seeds... [0.021s] Searching alignments... [0.047s] Deallocating memory... [0.006s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.034s] Building query seed array... [0.053s] Computing hash join... [0.034s] Masking low complexity seeds... [0.018s] Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.039s] Building query seed array... [0.042s] Computing hash join... [0.019s] Masking low complexity seeds... [0.03s] Searching alignments... [0.04s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.062s] Building query seed array... [0.038s] Computing hash join... [0.018s] Masking low complexity seeds... [0.035s] Searching alignments... [0.032s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.051s] Building query seed array... [0.03s] Computing hash join... [0.02s] Masking low complexity seeds... [0.009s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.034s] Building query seed array... [0.025s] Computing hash join... [0.009s] Masking low complexity seeds... [0.034s] Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.049s] Building query seed array... [0.059s] Computing hash join... [0.019s] Masking low complexity seeds... [0.023s] Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.043s] Building query seed array... [0.062s] Computing hash join... [0.027s] Masking low complexity seeds... [0.018s] Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.064s] Building query seed array... [0.051s] Computing hash join... [0.025s] Masking low complexity seeds... [0.027s] Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.067s] Building query seed array... [0.047s] Computing hash join... [0.023s] Masking low complexity seeds... [0.041s] Searching alignments... [0.032s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.071s] Building query seed array... [0.062s] Computing hash join... [0.022s] Masking low complexity seeds... [0.037s] Searching alignments... [0.054s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.036s] Building query seed array... [0.057s] Computing hash join... [0.023s] Masking low complexity seeds... [0.024s] Searching alignments... [0.04s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.112s] Building query seed array... [0.067s] Computing hash join... [0.04s] Masking low complexity seeds... [0.033s] Searching alignments... [0.029s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.061s] Building query seed array... [0.052s] Computing hash join... [0.021s] Masking low complexity seeds... [0.022s] Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.068s] Building query seed array... [0.04s] Computing hash join... [0.023s] Masking low complexity seeds... [0.016s] Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.033s] Building query seed array... [0.053s] Computing hash join... [0.05s] Masking low complexity seeds... [0.064s] Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.052s] Building query seed array... [0.032s] Computing hash join... [0.033s] Masking low complexity seeds... [0.017s] Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.038s] Building query seed array... [0.043s] Computing hash join... [0.017s] Masking low complexity seeds... [0.013s] Searching alignments... [0.118s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.041s] Building query seed array... [0.049s] Computing hash join... [0.027s] Masking low complexity seeds... [0.019s] Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.045s] Building query seed array... [0.059s] Computing hash join... [0.028s] Masking low complexity seeds... [0.03s] Searching alignments... [0.031s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.049s] Building query seed array... [0.068s] Computing hash join... [0.027s] Masking low complexity seeds... [0.059s] Searching alignments... [0.033s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.062s] Building query seed array... [0.027s] Computing hash join... [0.016s] Masking low complexity seeds... [0.032s] Searching alignments... [0.042s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.089s] Building query seed array... [0.029s] Computing hash join... [0.042s] Masking low complexity seeds... [0.034s] Searching alignments... [0.044s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.077s] Building query seed array... [0.157s] Computing hash join... [0.011s] Masking low complexity seeds... [0.019s] Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.068s] Building query seed array... [0.032s] Computing hash join... [0.013s] Masking low complexity seeds... [0.018s] Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.043s] Building query seed array... [0.038s] Computing hash join... [0.024s] Masking low complexity seeds... [0.031s] Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.062s] Building query seed array... [0.069s] Computing hash join... [0.019s] Masking low complexity seeds... [0.007s] Searching alignments... [0.048s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.071s] Building query seed array... [0.06s] Computing hash join... [0.014s] Masking low complexity seeds... [0.034s] Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.065s] Building query seed array... [0.05s] Computing hash join... [0.029s] Masking low complexity seeds... [0.017s] Searching alignments... [0.037s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.074s] Building query seed array... [0.078s] Computing hash join... [0.008s] Masking low complexity seeds... [0.031s] Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.07s] Building query seed array... [0.105s] Computing hash join... [0.024s] Masking low complexity seeds... [0.026s] Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.072s] Building query seed array... [0.047s] Computing hash join... [0.018s] Masking low complexity seeds... [0.033s] Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.075s] Building query seed array... [0.057s] Computing hash join... [0.016s] Masking low complexity seeds... [0.045s] Searching alignments... [0.053s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.058s] Building query seed array... [0.057s] Computing hash join... [0.017s] Masking low complexity seeds... [0.019s] Searching alignments... [0.037s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.063s] Building query seed array... [0.041s] Computing hash join... [0.013s] Masking low complexity seeds... [0.045s] Searching alignments... [0.046s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.044s] Building query seed array... [0.045s] Computing hash join... [0.038s] Masking low complexity seeds... [0.027s] Searching alignments... [0.081s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.068s] Building query seed array... [0.069s] Computing hash join... [0.031s] Masking low complexity seeds... [0.033s] Searching alignments... [0.056s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.08s] Building query seed array... [0.048s] Computing hash join... [0.031s] Masking low complexity seeds... [0.043s] Searching alignments... [0.049s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.055s] Building query seed array... [0.086s] Computing hash join... [0.023s] Masking low complexity seeds... [0.029s] Searching alignments... [0.055s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.042s] Building query seed array... [0.059s] Computing hash join... [0.026s] Masking low complexity seeds... [0.04s] Searching alignments... [0.042s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.055s] Building query seed array... [0.045s] Computing hash join... [0.038s] Masking low complexity seeds... [0.04s] Searching alignments... [0.054s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.046s] Building query seed array... [0.046s] Computing hash join... [0.023s] Masking low complexity seeds... [0.008s] Searching alignments... [0.025s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.039s] Building query seed array... [0.034s] Computing hash join... [0.013s] Masking low complexity seeds... [0.017s] Searching alignments... [0.025s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.074s] Building query seed array... [0.069s] Computing hash join... [0.011s] Masking low complexity seeds... [0.016s] Searching alignments... [0.05s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.06s] Building query seed array... [0.054s] Computing hash join... [0.017s] Masking low complexity seeds... [0.013s] Searching alignments... [0.037s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.044s] Building query seed array... [0.039s] Computing hash join... [0.032s] Masking low complexity seeds... [0.013s] Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.063s] Building query seed array... [0.041s] Computing hash join... [0.029s] Masking low complexity seeds... [0.024s] Searching alignments... [0.051s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.038s] Building query seed array... [0.047s] Computing hash join... [0.023s] Masking low complexity seeds... [0.015s] Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.057s] Building query seed array... [0.05s] Computing hash join... [0.026s] Masking low complexity seeds... [0.027s] Searching alignments... [0.031s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.04s] Building query seed array... [0.05s] Computing hash join... [0.025s] Masking low complexity seeds... [0.016s] Searching alignments... [0.049s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.03s] Building query seed array... [0.064s] Computing hash join... [0.04s] Masking low complexity seeds... [0.012s] Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.055s] Building query seed array... [0.057s] Computing hash join... [0.024s] Masking low complexity seeds... [0.02s] Searching alignments... [0.049s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.06s] Building query seed array... [0.07s] Computing hash join... [0.023s] Masking low complexity seeds... [0.03s] Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.081s] Building query seed array... [0.041s] Computing hash join... [0.025s] Masking low complexity seeds... [0.042s] Searching alignments... [0.039s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.054s] Building query seed array... [0.047s] Computing hash join... [0.019s] Masking low complexity seeds... [0.02s] Searching alignments... [0.046s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.057s] Building query seed array... [0.059s] Computing hash join... [0.027s] Masking low complexity seeds... [0.031s] Searching alignments... [0.04s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.067s] Building query seed array... [0.047s] Computing hash join... [0.026s] Masking low complexity seeds... [0.014s] Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.038s] Building query seed array... [0.053s] Computing hash join... [0.013s] Masking low complexity seeds... [0.055s] Searching alignments... [0.044s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.06s] Building query seed array... [0.056s] Computing hash join... [0.021s] Masking low complexity seeds... [0.04s] Searching alignments... [0.041s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.057s] Building query seed array... [0.055s] Computing hash join... [0.017s] Masking low complexity seeds... [0.024s] Searching alignments... [0.062s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.075s] Building query seed array... [0.088s] Computing hash join... [0.019s] Masking low complexity seeds... [0.012s] Searching alignments... [0.039s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.053s] Building query seed array... [0.032s] Computing hash join... [0.029s] Masking low complexity seeds... [0.009s] Searching alignments... [0.024s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... [2.992s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0.012s] Closing the database... [0s] Cleaning up... [0s] Total time = 17.113s Reported 489 pairwise alignments, 489 HSPs. 32 queries aligned. + diamond blastp --threads 1 --db test/M.faa.diamond --query test/E.faa --out /tmp/tmp.A8efFsAV1o/E.faa.vs.M.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.11.165 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.A8efFsAV1o #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/M.faa.diamond (type: Diamond database, sequences: 40, letters: 26963) Block size = 2000000000 Opening the input file... [0.02s] Opening the output file... [0s] Loading query sequences... [0.001s] Masking queries... [0.106s] Algorithm: Double-indexed Building query histograms... [0.163s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0.019s] Initializing temporary storage... [0.002s] Building reference histograms... [0.121s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.04s] Building query seed array... [0.03s] Computing hash join... [0.009s] Masking low complexity seeds... [0.028s] Searching alignments... [0.041s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.076s] Building query seed array... [0.071s] Computing hash join... [0.016s] Masking low complexity seeds... [0.042s] Searching alignments... [0.063s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.045s] Building query seed array... [0.033s] Computing hash join... [0.017s] Masking low complexity seeds... [0.01s] Searching alignments... [0.024s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.048s] Building query seed array... [0.078s] Computing hash join... [0.021s] Masking low complexity seeds... [0.017s] Searching alignments... [0.037s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.037s] Building query seed array... [0.044s] Computing hash join... [0.022s] Masking low complexity seeds... [0.029s] Searching alignments... [0.042s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.047s] Building query seed array... [0.043s] Computing hash join... [0.023s] Masking low complexity seeds... [0.015s] Searching alignments... [0.038s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.063s] Building query seed array... [0.027s] Computing hash join... [0.019s] Masking low complexity seeds... [0.027s] Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.035s] Building query seed array... [0.043s] Computing hash join... [0.023s] Masking low complexity seeds... [0.027s] Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.046s] Building query seed array... [0.06s] Computing hash join... [0.023s] Masking low complexity seeds... [0.027s] Searching alignments... [0.038s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.043s] Building query seed array... [0.052s] Computing hash join... [0.031s] Masking low complexity seeds... [0.028s] Searching alignments... [0.045s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.047s] Building query seed array... [0.067s] Computing hash join... [0.027s] Masking low complexity seeds... [0.027s] Searching alignments... [0.037s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.048s] Building query seed array... [0.047s] Computing hash join... [0.019s] Masking low complexity seeds... [0.043s] Searching alignments... [0.037s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.052s] Building query seed array... [0.051s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.049s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.055s] Building query seed array... [0.063s] Computing hash join... [0.019s] Masking low complexity seeds... [0.027s] Searching alignments... [0.046s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.058s] Building query seed array... [0.047s] Computing hash join... [0.035s] Masking low complexity seeds... [0.031s] Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.05s] Building query seed array... [0.039s] Computing hash join... [0.027s] Masking low complexity seeds... [0.031s] Searching alignments... [0.032s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.056s] Building query seed array... [0.043s] Computing hash join... [0.031s] Masking low complexity seeds... [0.015s] Searching alignments... [0.041s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.05s] Building query seed array... [0.047s] Computing hash join... [0.021s] Masking low complexity seeds... [0.021s] Searching alignments... [0.038s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.048s] Building query seed array... [0.048s] Computing hash join... [0.014s] Masking low complexity seeds... [0.014s] Searching alignments... [0.025s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.033s] Building query seed array... [0.038s] Computing hash join... [0.045s] Masking low complexity seeds... [0.027s] Searching alignments... [0.036s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.049s] Building query seed array... [0.061s] Computing hash join... [0.029s] Masking low complexity seeds... [0.023s] Searching alignments... [0.031s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.042s] Building query seed array... [0.05s] Computing hash join... [0.023s] Masking low complexity seeds... [0.034s] Searching alignments... [0.036s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.041s] Building query seed array... [0.044s] Computing hash join... [0.018s] Masking low complexity seeds... [0.048s] Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.031s] Building query seed array... [0.067s] Computing hash join... [0.011s] Masking low complexity seeds... [0.021s] Searching alignments... [0.024s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.056s] Building query seed array... [0.056s] Computing hash join... [0.018s] Masking low complexity seeds... [0.021s] Searching alignments... [0.029s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.047s] Building query seed array... [0.056s] Computing hash join... [0.016s] Masking low complexity seeds... [0.039s] Searching alignments... [0.046s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.043s] Building query seed array... [0.056s] Computing hash join... [0.023s] Masking low complexity seeds... [0.015s] Searching alignments... [0.061s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.048s] Building query seed array... [0.044s] Computing hash join... [0.025s] Masking low complexity seeds... [0.024s] Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.036s] Building query seed array... [0.045s] Computing hash join... [0.022s] Masking low complexity seeds... [0.035s] Searching alignments... [0.033s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.052s] Building query seed array... [0.039s] Computing hash join... [0.036s] Masking low complexity seeds... [0.031s] Searching alignments... [0.04s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.049s] Building query seed array... [0.068s] Computing hash join... [0.03s] Masking low complexity seeds... [0.025s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.042s] Building query seed array... [0.049s] Computing hash join... [0.03s] Masking low complexity seeds... [0.022s] Searching alignments... [0.032s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.068s] Building query seed array... [0.064s] Computing hash join... [0.026s] Masking low complexity seeds... [0.027s] Searching alignments... [0.044s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.045s] Building query seed array... [0.057s] Computing hash join... [0.012s] Masking low complexity seeds... [0.015s] Searching alignments... [0.036s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.07s] Building query seed array... [0.039s] Computing hash join... [0.032s] Masking low complexity seeds... [0.043s] Searching alignments... [0.046s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.05s] Building query seed array... [0.04s] Computing hash join... [0.026s] Masking low complexity seeds... [0.02s] Searching alignments... [0.036s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.062s] Building query seed array... [0.039s] Computing hash join... [0.04s] Masking low complexity seeds... [0.032s] Searching alignments... [0.029s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.096s] Building query seed array... [0.05s] Computing hash join... [0.028s] Masking low complexity seeds... [0.019s] Searching alignments... [0.04s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.081s] Building query seed array... [0.04s] Computing hash join... [0.026s] Masking low complexity seeds... [0.028s] Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.044s] Building query seed array... [0.052s] Computing hash join... [0.031s] Masking low complexity seeds... [0.018s] Searching alignments... [0.043s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.028s] Building query seed array... [0.055s] Computing hash join... [0.045s] Masking low complexity seeds... [0.017s] Searching alignments... [0.042s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.044s] Building query seed array... [0.07s] Computing hash join... [0.024s] Masking low complexity seeds... [0.02s] Searching alignments... [0.057s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.059s] Building query seed array... [0.055s] Computing hash join... [0.039s] Masking low complexity seeds... [0.015s] Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.057s] Building query seed array... [0.064s] Computing hash join... [0.037s] Masking low complexity seeds... [0.009s] Searching alignments... [0.031s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.047s] Building query seed array... [0.066s] Computing hash join... [0.042s] Masking low complexity seeds... [0.01s] Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.065s] Building query seed array... [0.037s] Computing hash join... [0.004s] Masking low complexity seeds... [0.004s] Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.053s] Building query seed array... [0.045s] Computing hash join... [0.022s] Masking low complexity seeds... [0.031s] Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.039s] Building query seed array... [0.046s] Computing hash join... [0.029s] Masking low complexity seeds... [0.023s] Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.057s] Building query seed array... [0.025s] Computing hash join... [0.031s] Masking low complexity seeds... [0.031s] Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.045s] Building query seed array... [0.083s] Computing hash join... [0.027s] Masking low complexity seeds... [0.022s] Searching alignments... [0.048s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.066s] Building query seed array... [0.039s] Computing hash join... [0.04s] Masking low complexity seeds... [0.015s] Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.06s] Building query seed array... [0.047s] Computing hash join... [0.03s] Masking low complexity seeds... [0.027s] Searching alignments... [0.024s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.046s] Building query seed array... [0.046s] Computing hash join... [0.027s] Masking low complexity seeds... [0.03s] Searching alignments... [0.037s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.05s] Building query seed array... [0.057s] Computing hash join... [0.029s] Masking low complexity seeds... [0.026s] Searching alignments... [0.037s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.048s] Building query seed array... [0.048s] Computing hash join... [0.018s] Masking low complexity seeds... [0.015s] Searching alignments... [0.046s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.028s] Building query seed array... [0.049s] Computing hash join... [0.017s] Masking low complexity seeds... [0.011s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.019s] Building query seed array... [0.022s] Computing hash join... [0.012s] Masking low complexity seeds... [0.001s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.047s] Building query seed array... [0.038s] Computing hash join... [0.032s] Masking low complexity seeds... [0.015s] Searching alignments... [0.044s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.063s] Building query seed array... [0.061s] Computing hash join... [0.022s] Masking low complexity seeds... [0.021s] Searching alignments... [0.032s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.034s] Building query seed array... [0.052s] Computing hash join... [0.018s] Masking low complexity seeds... [0.02s] Searching alignments... [0.049s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.05s] Building query seed array... [0.048s] Computing hash join... [0.022s] Masking low complexity seeds... [0.023s] Searching alignments... [0.045s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.085s] Building query seed array... [0.088s] Computing hash join... [0.048s] Masking low complexity seeds... [0.027s] Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.041s] Building query seed array... [0.04s] Computing hash join... [0.023s] Masking low complexity seeds... [0.036s] Searching alignments... [0.07s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.077s] Building query seed array... [0.047s] Computing hash join... [0.014s] Masking low complexity seeds... [0.033s] Searching alignments... [0.035s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... [6.548s] Deallocating reference... [0.012s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0.031s] Closing the database... [0.011s] Cleaning up... [0.003s] Total time = 19.805s Reported 1173 pairwise alignments, 1173 HSPs. 72 queries aligned. + diamond blastp --ignore-warnings --threads 1 --db test/E.faa.diamond --query test/C2.faa --out /tmp/tmp.A8efFsAV1o/C2.faa.vs.E.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.11.165 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.A8efFsAV1o #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/E.faa.diamond (type: Diamond database, sequences: 72, letters: 54509) Block size = 2000000000 Opening the input file... [0.003s] Opening the output file... [0.003s] Loading query sequences... [0s] Masking queries... [0.032s] Algorithm: Double-indexed Building query histograms... [0.059s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0.065s] Initializing temporary storage... [0.024s] Building reference histograms... [0.177s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.043s] Building query seed array... [0.058s] Computing hash join... [0.034s] Masking low complexity seeds... [0.026s] Searching alignments... [0.032s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.056s] Building query seed array... [0.049s] Computing hash join... [0.023s] Masking low complexity seeds... [0.016s] Searching alignments... [0.039s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.051s] Building query seed array... [0.051s] Computing hash join... [0.018s] Masking low complexity seeds... [0.032s] Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.049s] Building query seed array... [0.057s] Computing hash join... [0.028s] Masking low complexity seeds... [0.026s] Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.069s] Building query seed array... [0.056s] Computing hash join... [0.032s] Masking low complexity seeds... [0.03s] Searching alignments... [0.032s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.064s] Building query seed array... [0.041s] Computing hash join... [0.018s] Masking low complexity seeds... [0.022s] Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.056s] Building query seed array... [0.035s] Computing hash join... [0.041s] Masking low complexity seeds... [0.019s] Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.083s] Building query seed array... [0.053s] Computing hash join... [0.011s] Masking low complexity seeds... [0.027s] Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.061s] Building query seed array... [0.045s] Computing hash join... [0.025s] Masking low complexity seeds... [0.004s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.037s] Building query seed array... [0.039s] Computing hash join... [0.027s] Masking low complexity seeds... [0.023s] Searching alignments... [0.044s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.052s] Building query seed array... [0.037s] Computing hash join... [0.018s] Masking low complexity seeds... [0.032s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.052s] Building query seed array... [0.05s] Computing hash join... [0.023s] Masking low complexity seeds... [0.027s] Searching alignments... [0.042s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.03s] Building query seed array... [0.039s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.064s] Building query seed array... [0.041s] Computing hash join... [0.024s] Masking low complexity seeds... [0.019s] Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.027s] Building query seed array... [0.039s] Computing hash join... [0.021s] Masking low complexity seeds... [0.023s] Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.028s] Building query seed array... [0.047s] Computing hash join... [0.009s] Masking low complexity seeds... [0.009s] Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.042s] Building query seed array... [0.075s] Computing hash join... [0.011s] Masking low complexity seeds... [0.027s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.083s] Building query seed array... [0.022s] Computing hash join... [0.031s] Masking low complexity seeds... [0.036s] Searching alignments... [0.048s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.046s] Building query seed array... [0.058s] Computing hash join... [0.037s] Masking low complexity seeds... [0.013s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.022s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.048s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.019s] Masking low complexity seeds... [0.016s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.035s] Building query seed array... [0.045s] Computing hash join... [0.013s] Masking low complexity seeds... [0.015s] Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.039s] Building query seed array... [0.057s] Computing hash join... [0.016s] Masking low complexity seeds... [0.011s] Searching alignments... [0.042s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.053s] Building query seed array... [0.066s] Computing hash join... [0.031s] Masking low complexity seeds... [0.019s] Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.053s] Building query seed array... [0.045s] Computing hash join... [0.006s] Masking low complexity seeds... [0.014s] Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.036s] Building query seed array... [0.027s] Computing hash join... [0.013s] Masking low complexity seeds... [0.034s] Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.044s] Building query seed array... [0.065s] Computing hash join... [0.023s] Masking low complexity seeds... [0.031s] Searching alignments... [0.047s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.047s] Building query seed array... [0.042s] Computing hash join... [0.019s] Masking low complexity seeds... [0.023s] Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.052s] Building query seed array... [0.049s] Computing hash join... [0.023s] Masking low complexity seeds... [0.023s] Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.048s] Building query seed array... [0.049s] Computing hash join... [0.024s] Masking low complexity seeds... [0.019s] Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.044s] Building query seed array... [0.046s] Computing hash join... [0.028s] Masking low complexity seeds... [0.029s] Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.052s] Building query seed array... [0.062s] Computing hash join... [0.023s] Masking low complexity seeds... [0.022s] Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.023s] Building query seed array... [0.02s] Computing hash join... [0.019s] Masking low complexity seeds... [0.024s] Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.007s] Building query seed array... [0.035s] Computing hash join... [0.02s] Masking low complexity seeds... [0.015s] Searching alignments... [0.025s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.057s] Building query seed array... [0.041s] Computing hash join... [0.019s] Masking low complexity seeds... [0.019s] Searching alignments... [0.031s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.059s] Building query seed array... [0.038s] Computing hash join... [0.031s] Masking low complexity seeds... [0.022s] Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.072s] Building query seed array... [0.043s] Computing hash join... [0.037s] Masking low complexity seeds... [0.027s] Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.038s] Building query seed array... [0.095s] Computing hash join... [0.023s] Masking low complexity seeds... [0.023s] Searching alignments... [0.038s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.061s] Building query seed array... [0.059s] Computing hash join... [0.023s] Masking low complexity seeds... [0.023s] Searching alignments... [0.061s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.071s] Building query seed array... [0.029s] Computing hash join... [0.02s] Masking low complexity seeds... [0.014s] Searching alignments... [0.061s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.039s] Building query seed array... [0.113s] Computing hash join... [0.013s] Masking low complexity seeds... [0.033s] Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.084s] Building query seed array... [0.067s] Computing hash join... [0.039s] Masking low complexity seeds... [0.043s] Searching alignments... [0.036s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.049s] Building query seed array... [0.068s] Computing hash join... [0.015s] Masking low complexity seeds... [0.016s] Searching alignments... [0.045s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.07s] Building query seed array... [0.06s] Computing hash join... [0.011s] Masking low complexity seeds... [0.018s] Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.059s] Building query seed array... [0.062s] Computing hash join... [0.047s] Masking low complexity seeds... [0.039s] Searching alignments... [0.029s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.047s] Building query seed array... [0.045s] Computing hash join... [0.06s] Masking low complexity seeds... [0.01s] Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.029s] Building query seed array... [0.089s] Computing hash join... [0.011s] Masking low complexity seeds... [0.107s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.077s] Building query seed array... [0.027s] Computing hash join... [0.015s] Masking low complexity seeds... [0.019s] Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.043s] Building query seed array... [0.127s] Computing hash join... [0.107s] Masking low complexity seeds... [0.017s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.082s] Building query seed array... [0.12s] Computing hash join... [0.016s] Masking low complexity seeds... [0.014s] Searching alignments... [0.086s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.027s] Building query seed array... [0.019s] Computing hash join... [0.013s] Masking low complexity seeds... [0.077s] Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.078s] Building query seed array... [0.136s] Computing hash join... [0.018s] Masking low complexity seeds... [0.019s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.051s] Building query seed array... [0.063s] Computing hash join... [0.059s] Masking low complexity seeds... [0.011s] Searching alignments... [0.079s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.05s] Building query seed array... [0.015s] Computing hash join... [0.011s] Masking low complexity seeds... [0.023s] Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.042s] Building query seed array... [0.039s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.02s] Building query seed array... [0.032s] Computing hash join... [0.023s] Masking low complexity seeds... [0.019s] Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.026s] Building query seed array... [0.059s] Computing hash join... [0.023s] Masking low complexity seeds... [0.019s] Searching alignments... [0.024s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.061s] Building query seed array... [0.027s] Computing hash join... [0.015s] Masking low complexity seeds... [0.019s] Searching alignments... [0.046s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.042s] Building query seed array... [0.035s] Computing hash join... [0.031s] Masking low complexity seeds... [0.027s] Searching alignments... [0.05s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.038s] Building query seed array... [0.045s] Computing hash join... [0.026s] Masking low complexity seeds... [0.027s] Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.066s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.019s] Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.053s] Building query seed array... [0.044s] Computing hash join... [0.023s] Masking low complexity seeds... [0.028s] Searching alignments... [0.058s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.053s] Building query seed array... [0.047s] Computing hash join... [0.035s] Masking low complexity seeds... [0.026s] Searching alignments... [0.039s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.053s] Building query seed array... [0.063s] Computing hash join... [0.031s] Masking low complexity seeds... [0.031s] Searching alignments... [0.066s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... [0.073s] Deallocating reference... [0s] Loading reference sequences... [0.004s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 13.08s Reported 1 pairwise alignments, 1 HSPs. 1 queries aligned. + diamond blastp --threads 1 --db test/C2.faa.diamond --query test/E.faa --out /tmp/tmp.A8efFsAV1o/E.faa.vs.C2.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.11.165 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.A8efFsAV1o #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/C2.faa.diamond (type: Diamond database, sequences: 2, letters: 726) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0.004s] Masking queries... [0.028s] Algorithm: Double-indexed Building query histograms... [0.02s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0s] Initializing temporary storage... [0.001s] Building reference histograms... [0s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.004s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.004s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.004s] Computing hash join... [0.024s] Masking low complexity seeds... [0.011s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.025s] Building query seed array... [0.004s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.004s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.06s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.029s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.035s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.019s] Searching alignments... [0.038s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.057s] Building query seed array... [0.041s] Computing hash join... [0.028s] Masking low complexity seeds... [0.027s] Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.038s] Building query seed array... [0.059s] Computing hash join... [0.027s] Masking low complexity seeds... [0.059s] Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.045s] Building query seed array... [0.039s] Computing hash join... [0.019s] Masking low complexity seeds... [0.015s] Searching alignments... [0.042s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.034s] Building query seed array... [0.035s] Computing hash join... [0.019s] Masking low complexity seeds... [0.015s] Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.029s] Building query seed array... [0.065s] Computing hash join... [0.014s] Masking low complexity seeds... [0.022s] Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.041s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.037s] Building query seed array... [0.051s] Computing hash join... [0.023s] Masking low complexity seeds... [0.026s] Searching alignments... [0.038s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.058s] Building query seed array... [0.079s] Computing hash join... [0.027s] Masking low complexity seeds... [0.031s] Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.045s] Building query seed array... [0.046s] Computing hash join... [0.027s] Masking low complexity seeds... [0.039s] Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.077s] Building query seed array... [0.059s] Computing hash join... [0.04s] Masking low complexity seeds... [0.026s] Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.057s] Building query seed array... [0.055s] Computing hash join... [0.027s] Masking low complexity seeds... [0.027s] Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.069s] Building query seed array... [0.051s] Computing hash join... [0.023s] Masking low complexity seeds... [0.023s] Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.049s] Building query seed array... [0.053s] Computing hash join... [0.029s] Masking low complexity seeds... [0.027s] Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.061s] Building query seed array... [0.059s] Computing hash join... [0.023s] Masking low complexity seeds... [0.015s] Searching alignments... [0.042s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.049s] Building query seed array... [0.047s] Computing hash join... [0.025s] Masking low complexity seeds... [0.029s] Searching alignments... [0.038s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.062s] Building query seed array... [0.055s] Computing hash join... [0.027s] Masking low complexity seeds... [0.019s] Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.069s] Building query seed array... [0.045s] Computing hash join... [0.033s] Masking low complexity seeds... [0.035s] Searching alignments... [0.038s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.055s] Building query seed array... [0.05s] Computing hash join... [0.044s] Masking low complexity seeds... [0.027s] Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.097s] Building query seed array... [0.067s] Computing hash join... [0.031s] Masking low complexity seeds... [0.015s] Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.054s] Building query seed array... [0.031s] Computing hash join... [0.025s] Masking low complexity seeds... [0.033s] Searching alignments... [0.042s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.053s] Building query seed array... [0.055s] Computing hash join... [0.035s] Masking low complexity seeds... [0.036s] Searching alignments... [0.037s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.071s] Building query seed array... [0.055s] Computing hash join... [0.037s] Masking low complexity seeds... [0.037s] Searching alignments... [0.035s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.046s] Building query seed array... [0.058s] Computing hash join... [0.009s] Masking low complexity seeds... [0.019s] Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.042s] Building query seed array... [0.057s] Computing hash join... [0.026s] Masking low complexity seeds... [0.042s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.029s] Building query seed array... [0.042s] Computing hash join... [0.017s] Masking low complexity seeds... [0.029s] Searching alignments... [0.025s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.041s] Building query seed array... [0.031s] Computing hash join... [0.019s] Masking low complexity seeds... [0.015s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.019s] Masking low complexity seeds... [0.023s] Searching alignments... [0.054s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.031s] Building query seed array... [0.038s] Computing hash join... [0.019s] Masking low complexity seeds... [0.019s] Searching alignments... [0.065s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.05s] Building query seed array... [0.031s] Computing hash join... [0.031s] Masking low complexity seeds... [0.035s] Searching alignments... [0.033s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.045s] Building query seed array... [0.047s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.021s] Building query seed array... [0.045s] Computing hash join... [0.011s] Masking low complexity seeds... [0.009s] Searching alignments... [0.057s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.03s] Building query seed array... [0.041s] Computing hash join... [0.018s] Masking low complexity seeds... [0.019s] Searching alignments... [0.045s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.038s] Building query seed array... [0.048s] Computing hash join... [0.022s] Masking low complexity seeds... [0.027s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.045s] Building query seed array... [0.045s] Computing hash join... [0.026s] Masking low complexity seeds... [0.019s] Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.025s] Building query seed array... [0.043s] Computing hash join... [0.028s] Masking low complexity seeds... [0.022s] Searching alignments... [0.037s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.038s] Building query seed array... [0.025s] Computing hash join... [0.013s] Masking low complexity seeds... [0.015s] Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.027s] Building query seed array... [0.049s] Computing hash join... [0.013s] Masking low complexity seeds... [0.023s] Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.037s] Building query seed array... [0.05s] Computing hash join... [0.027s] Masking low complexity seeds... [0.009s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.073s] Building query seed array... [0.072s] Computing hash join... [0.017s] Masking low complexity seeds... [0.019s] Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.042s] Building query seed array... [0.034s] Computing hash join... [0.048s] Masking low complexity seeds... [0.014s] Searching alignments... [0.044s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.07s] Building query seed array... [0.044s] Computing hash join... [0.013s] Masking low complexity seeds... [0.008s] Searching alignments... [0.047s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.035s] Building query seed array... [0.036s] Computing hash join... [0.021s] Masking low complexity seeds... [0.021s] Searching alignments... [0.035s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.034s] Building query seed array... [0.044s] Computing hash join... [0.035s] Masking low complexity seeds... [0.017s] Searching alignments... [0.029s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.044s] Building query seed array... [0.052s] Computing hash join... [0.029s] Masking low complexity seeds... [0.043s] Searching alignments... [0.055s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.044s] Computing hash join... [0.016s] Masking low complexity seeds... [0.014s] Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.025s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.024s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.037s] Building query seed array... [0.041s] Computing hash join... [0.021s] Masking low complexity seeds... [0.019s] Searching alignments... [0.033s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.041s] Building query seed array... [0.045s] Computing hash join... [0.018s] Masking low complexity seeds... [0.019s] Searching alignments... [0.024s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.045s] Building query seed array... [0.042s] Computing hash join... [0.018s] Masking low complexity seeds... [0.02s] Searching alignments... [0.032s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.04s] Building query seed array... [0.049s] Computing hash join... [0.014s] Masking low complexity seeds... [0.015s] Searching alignments... [0.035s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.038s] Building query seed array... [0.037s] Computing hash join... [0.026s] Masking low complexity seeds... [0.015s] Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.034s] Building query seed array... [0.047s] Computing hash join... [0.018s] Masking low complexity seeds... [0.02s] Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.038s] Building query seed array... [0.043s] Computing hash join... [0.024s] Masking low complexity seeds... [0.015s] Searching alignments... [0.047s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.04s] Building query seed array... [0.039s] Computing hash join... [0.02s] Masking low complexity seeds... [0.019s] Searching alignments... [0.031s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.074s] Building query seed array... [0.041s] Computing hash join... [0.018s] Masking low complexity seeds... [0.026s] Searching alignments... [0.032s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.043s] Building query seed array... [0.048s] Computing hash join... [0.019s] Masking low complexity seeds... [0.014s] Searching alignments... [0.024s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.064s] Building query seed array... [0.061s] Computing hash join... [0.03s] Masking low complexity seeds... [0.018s] Searching alignments... [0.02s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... [0.094s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0.006s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 10.995s Reported 1 pairwise alignments, 1 HSPs. 1 queries aligned. + diamond blastp --threads 1 --db test/L.faa.diamond --query test/M.faa --out /tmp/tmp.A8efFsAV1o/M.faa.vs.L.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.11.165 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.A8efFsAV1o #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/L.faa.diamond (type: Diamond database, sequences: 40, letters: 26652) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0.003s] Loading query sequences... [0.004s] Masking queries... [0.043s] Algorithm: Double-indexed Building query histograms... [0.084s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0.023s] Initializing temporary storage... [0.011s] Building reference histograms... [0.084s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.059s] Building query seed array... [0.03s] Computing hash join... [0.011s] Masking low complexity seeds... [0.008s] Searching alignments... [0.035s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.06s] Building query seed array... [0.047s] Computing hash join... [0.026s] Masking low complexity seeds... [0.027s] Searching alignments... [0.093s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.043s] Building query seed array... [0.047s] Computing hash join... [0.023s] Masking low complexity seeds... [0.027s] Searching alignments... [0.062s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.056s] Building query seed array... [0.047s] Computing hash join... [0.023s] Masking low complexity seeds... [0.023s] Searching alignments... [0.056s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.05s] Building query seed array... [0.048s] Computing hash join... [0.017s] Masking low complexity seeds... [0.02s] Searching alignments... [0.048s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.044s] Building query seed array... [0.04s] Computing hash join... [0.023s] Masking low complexity seeds... [0.031s] Searching alignments... [0.058s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.045s] Building query seed array... [0.051s] Computing hash join... [0.027s] Masking low complexity seeds... [0.023s] Searching alignments... [0.06s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.046s] Building query seed array... [0.056s] Computing hash join... [0.029s] Masking low complexity seeds... [0.039s] Searching alignments... [0.062s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.045s] Building query seed array... [0.047s] Computing hash join... [0.019s] Masking low complexity seeds... [0.03s] Searching alignments... [0.054s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.031s] Building query seed array... [0.04s] Computing hash join... [0.026s] Masking low complexity seeds... [0.019s] Searching alignments... [0.049s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.039s] Building query seed array... [0.051s] Computing hash join... [0.022s] Masking low complexity seeds... [0.023s] Searching alignments... [0.058s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.034s] Building query seed array... [0.048s] Computing hash join... [0.018s] Masking low complexity seeds... [0.012s] Searching alignments... [0.062s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.041s] Building query seed array... [0.041s] Computing hash join... [0.019s] Masking low complexity seeds... [0.019s] Searching alignments... [0.046s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.052s] Building query seed array... [0.05s] Computing hash join... [0.024s] Masking low complexity seeds... [0.023s] Searching alignments... [0.069s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.033s] Building query seed array... [0.035s] Computing hash join... [0.01s] Masking low complexity seeds... [0.011s] Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.022s] Building query seed array... [0.029s] Computing hash join... [0.01s] Masking low complexity seeds... [0.011s] Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.022s] Building query seed array... [0.02s] Computing hash join... [0.01s] Masking low complexity seeds... [0.069s] Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.047s] Building query seed array... [0.037s] Computing hash join... [0.015s] Masking low complexity seeds... [0.02s] Searching alignments... [0.038s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.017s] Building query seed array... [0.02s] Computing hash join... [0.058s] Masking low complexity seeds... [0.007s] Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.08s] Building query seed array... [0.017s] Computing hash join... [0.008s] Masking low complexity seeds... [0.038s] Searching alignments... [0.029s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.054s] Building query seed array... [0.071s] Computing hash join... [0.021s] Masking low complexity seeds... [0.044s] Searching alignments... [0.08s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.061s] Building query seed array... [0.07s] Computing hash join... [0.043s] Masking low complexity seeds... [0.054s] Searching alignments... [0.081s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.084s] Building query seed array... [0.083s] Computing hash join... [0.011s] Masking low complexity seeds... [0.04s] Searching alignments... [0.076s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.028s] Building query seed array... [0.042s] Computing hash join... [0.019s] Masking low complexity seeds... [0.018s] Searching alignments... [0.025s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.033s] Building query seed array... [0.025s] Computing hash join... [0.014s] Masking low complexity seeds... [0.023s] Searching alignments... [0.033s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.05s] Building query seed array... [0.031s] Computing hash join... [0.012s] Masking low complexity seeds... [0.017s] Searching alignments... [0.045s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.035s] Building query seed array... [0.038s] Computing hash join... [0.01s] Masking low complexity seeds... [0.015s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.004s] Computing hash join... [0.001s] Masking low complexity seeds... [0.023s] Searching alignments... [0.08s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.043s] Building query seed array... [0.031s] Computing hash join... [0.019s] Masking low complexity seeds... [0.034s] Searching alignments... [0.057s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.034s] Building query seed array... [0.015s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.019s] Building query seed array... [0.039s] Computing hash join... [0.011s] Masking low complexity seeds... [0.007s] Searching alignments... [0.038s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.031s] Building query seed array... [0.019s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.062s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.031s] Building query seed array... [0.027s] Computing hash join... [0.019s] Masking low complexity seeds... [0.027s] Searching alignments... [0.046s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.047s] Building query seed array... [0.047s] Computing hash join... [0.019s] Masking low complexity seeds... [0.027s] Searching alignments... [0.025s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.04s] Building query seed array... [0.039s] Computing hash join... [0.019s] Masking low complexity seeds... [0.015s] Searching alignments... [0.062s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.047s] Building query seed array... [0.023s] Computing hash join... [0.023s] Masking low complexity seeds... [0.015s] Searching alignments... [0.058s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.034s] Building query seed array... [0.019s] Computing hash join... [0.019s] Masking low complexity seeds... [0.02s] Searching alignments... [0.06s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.039s] Building query seed array... [0.039s] Computing hash join... [0.019s] Masking low complexity seeds... [0.031s] Searching alignments... [0.057s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.048s] Building query seed array... [0.044s] Computing hash join... [0.018s] Masking low complexity seeds... [0.023s] Searching alignments... [0.08s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.045s] Building query seed array... [0.047s] Computing hash join... [0.023s] Masking low complexity seeds... [0.01s] Searching alignments... [0.025s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.037s] Building query seed array... [0.039s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.076s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.033s] Building query seed array... [0.047s] Computing hash join... [0.016s] Masking low complexity seeds... [0.041s] Searching alignments... [0.064s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.049s] Building query seed array... [0.035s] Computing hash join... [0.014s] Masking low complexity seeds... [0.015s] Searching alignments... [0.06s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.029s] Building query seed array... [0.066s] Computing hash join... [0.019s] Masking low complexity seeds... [0.015s] Searching alignments... [0.076s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.049s] Building query seed array... [0.052s] Computing hash join... [0.01s] Masking low complexity seeds... [0.039s] Searching alignments... [0.052s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.044s] Building query seed array... [0.048s] Computing hash join... [0.023s] Masking low complexity seeds... [0.019s] Searching alignments... [0.084s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.043s] Building query seed array... [0.055s] Computing hash join... [0.031s] Masking low complexity seeds... [0.042s] Searching alignments... [0.076s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.049s] Building query seed array... [0.058s] Computing hash join... [0.015s] Masking low complexity seeds... [0.02s] Searching alignments... [0.096s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.051s] Building query seed array... [0.04s] Computing hash join... [0.018s] Masking low complexity seeds... [0.02s] Searching alignments... [0.083s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.042s] Building query seed array... [0.055s] Computing hash join... [0.016s] Masking low complexity seeds... [0.015s] Searching alignments... [0.076s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.043s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.044s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.028s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.019s] Searching alignments... [0.055s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.034s] Building query seed array... [0.026s] Computing hash join... [0.018s] Masking low complexity seeds... [0.027s] Searching alignments... [0.077s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.053s] Building query seed array... [0.051s] Computing hash join... [0.019s] Masking low complexity seeds... [0.023s] Searching alignments... [0.067s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.073s] Building query seed array... [0.063s] Computing hash join... [0.031s] Masking low complexity seeds... [0.035s] Searching alignments... [0.067s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.065s] Building query seed array... [0.035s] Computing hash join... [0.019s] Masking low complexity seeds... [0.018s] Searching alignments... [0.085s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.032s] Building query seed array... [0.051s] Computing hash join... [0.019s] Masking low complexity seeds... [0.023s] Searching alignments... [0.061s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.041s] Building query seed array... [0.042s] Computing hash join... [0.024s] Masking low complexity seeds... [0.019s] Searching alignments... [0.08s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.045s] Building query seed array... [0.04s] Computing hash join... [0.018s] Masking low complexity seeds... [0.027s] Searching alignments... [0.062s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.04s] Building query seed array... [0.039s] Computing hash join... [0.026s] Masking low complexity seeds... [0.015s] Searching alignments... [0.066s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.044s] Building query seed array... [0.04s] Computing hash join... [0.026s] Masking low complexity seeds... [0.023s] Searching alignments... [0.073s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.045s] Building query seed array... [0.041s] Computing hash join... [0.018s] Masking low complexity seeds... [0.016s] Searching alignments... [0.081s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.044s] Building query seed array... [0.038s] Computing hash join... [0.024s] Masking low complexity seeds... [0.023s] Searching alignments... [0.056s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.043s] Building query seed array... [0.05s] Computing hash join... [0.019s] Masking low complexity seeds... [0.015s] Searching alignments... [0.082s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... [1.65s] Deallocating reference... [0s] Loading reference sequences... [0.006s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0.004s] Closing the input file... [0.007s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 14.608s Reported 390 pairwise alignments, 390 HSPs. 39 queries aligned. + diamond blastp --threads 1 --db test/M.faa.diamond --query test/L.faa --out /tmp/tmp.A8efFsAV1o/L.faa.vs.M.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.11.165 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.A8efFsAV1o #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/M.faa.diamond (type: Diamond database, sequences: 40, letters: 26963) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] Masking queries... [0.024s] Algorithm: Double-indexed Building query histograms... [0.04s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0.013s] Initializing temporary storage... [0.008s] Building reference histograms... [0.068s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.034s] Building query seed array... [0.036s] Computing hash join... [0.023s] Masking low complexity seeds... [0.019s] Searching alignments... [0.065s] Deallocating memory... [0.005s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.054s] Building query seed array... [0.044s] Computing hash join... [0.014s] Masking low complexity seeds... [0.02s] Searching alignments... [0.085s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.046s] Building query seed array... [0.031s] Computing hash join... [0.023s] Masking low complexity seeds... [0.019s] Searching alignments... [0.054s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.028s] Building query seed array... [0.035s] Computing hash join... [0.019s] Masking low complexity seeds... [0.015s] Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.049s] Building query seed array... [0.038s] Computing hash join... [0.022s] Masking low complexity seeds... [0.014s] Searching alignments... [0.047s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.024s] Building query seed array... [0.031s] Computing hash join... [0.019s] Masking low complexity seeds... [0.035s] Searching alignments... [0.029s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.034s] Building query seed array... [0.046s] Computing hash join... [0.017s] Masking low complexity seeds... [0.014s] Searching alignments... [0.029s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.032s] Building query seed array... [0.032s] Computing hash join... [0.015s] Masking low complexity seeds... [0.01s] Searching alignments... [0.05s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.015s] Building query seed array... [0.002s] Computing hash join... [0.019s] Masking low complexity seeds... [0.02s] Searching alignments... [0.043s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.035s] Building query seed array... [0.058s] Computing hash join... [0.02s] Masking low complexity seeds... [0.018s] Searching alignments... [0.052s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.038s] Building query seed array... [0.046s] Computing hash join... [0.023s] Masking low complexity seeds... [0.016s] Searching alignments... [0.049s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.036s] Building query seed array... [0.036s] Computing hash join... [0.015s] Masking low complexity seeds... [0.022s] Searching alignments... [0.045s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.041s] Building query seed array... [0.043s] Computing hash join... [0.019s] Masking low complexity seeds... [0.023s] Searching alignments... [0.041s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.045s] Building query seed array... [0.051s] Computing hash join... [0.023s] Masking low complexity seeds... [0.031s] Searching alignments... [0.066s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.044s] Building query seed array... [0.035s] Computing hash join... [0.023s] Masking low complexity seeds... [0.023s] Searching alignments... [0.05s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.039s] Building query seed array... [0.043s] Computing hash join... [0.019s] Masking low complexity seeds... [0.023s] Searching alignments... [0.041s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.032s] Building query seed array... [0.044s] Computing hash join... [0.023s] Masking low complexity seeds... [0.023s] Searching alignments... [0.058s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.044s] Building query seed array... [0.041s] Computing hash join... [0.021s] Masking low complexity seeds... [0.026s] Searching alignments... [0.063s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.043s] Building query seed array... [0.051s] Computing hash join... [0.019s] Masking low complexity seeds... [0.019s] Searching alignments... [0.049s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.049s] Building query seed array... [0.046s] Computing hash join... [0.024s] Masking low complexity seeds... [0.015s] Searching alignments... [0.058s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.044s] Building query seed array... [0.051s] Computing hash join... [0.023s] Masking low complexity seeds... [0.019s] Searching alignments... [0.056s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.037s] Building query seed array... [0.043s] Computing hash join... [0.023s] Masking low complexity seeds... [0.018s] Searching alignments... [0.053s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.049s] Building query seed array... [0.043s] Computing hash join... [0.026s] Masking low complexity seeds... [0.023s] Searching alignments... [0.073s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.052s] Building query seed array... [0.041s] Computing hash join... [0.025s] Masking low complexity seeds... [0.019s] Searching alignments... [0.044s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.044s] Building query seed array... [0.047s] Computing hash join... [0.023s] Masking low complexity seeds... [0.027s] Searching alignments... [0.093s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.04s] Building query seed array... [0.051s] Computing hash join... [0.018s] Masking low complexity seeds... [0.015s] Searching alignments... [0.04s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.037s] Building query seed array... [0.05s] Computing hash join... [0.029s] Masking low complexity seeds... [0.024s] Searching alignments... [0.051s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.04s] Building query seed array... [0.04s] Computing hash join... [0.019s] Masking low complexity seeds... [0.011s] Searching alignments... [0.04s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.056s] Building query seed array... [0.033s] Computing hash join... [0.014s] Masking low complexity seeds... [0.015s] Searching alignments... [0.035s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.039s] Building query seed array... [0.042s] Computing hash join... [0.019s] Masking low complexity seeds... [0.024s] Searching alignments... [0.089s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.04s] Building query seed array... [0.035s] Computing hash join... [0.019s] Masking low complexity seeds... [0.015s] Searching alignments... [0.036s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.062s] Building query seed array... [0.047s] Computing hash join... [0.023s] Masking low complexity seeds... [0.027s] Searching alignments... [0.064s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.043s] Building query seed array... [0.08s] Computing hash join... [0.043s] Masking low complexity seeds... [0.022s] Searching alignments... [0.082s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.045s] Building query seed array... [0.086s] Computing hash join... [0.012s] Masking low complexity seeds... [0.11s] Searching alignments... [0.042s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.029s] Building query seed array... [0.093s] Computing hash join... [0.026s] Masking low complexity seeds... [0.019s] Searching alignments... [0.07s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.086s] Building query seed array... [0.068s] Computing hash join... [0.034s] Masking low complexity seeds... [0.024s] Searching alignments... [0.1s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.063s] Building query seed array... [0.083s] Computing hash join... [0.019s] Masking low complexity seeds... [0.019s] Searching alignments... [0.073s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.05s] Building query seed array... [0.115s] Computing hash join... [0.035s] Masking low complexity seeds... [0.016s] Searching alignments... [0.08s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.066s] Building query seed array... [0.068s] Computing hash join... [0.054s] Masking low complexity seeds... [0.054s] Searching alignments... [0.073s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.091s] Building query seed array... [0.062s] Computing hash join... [0.023s] Masking low complexity seeds... [0.015s] Searching alignments... [0.14s] Deallocating memory... [0.01s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.075s] Building query seed array... [0.083s] Computing hash join... [0.034s] Masking low complexity seeds... [0.067s] Searching alignments... [0.036s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.083s] Building query seed array... [0.027s] Computing hash join... [0.028s] Masking low complexity seeds... [0.045s] Searching alignments... [0.112s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.07s] Building query seed array... [0.097s] Computing hash join... [0.027s] Masking low complexity seeds... [0.015s] Searching alignments... [0.103s] Deallocating memory... [0.007s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.071s] Building query seed array... [0.043s] Computing hash join... [0.015s] Masking low complexity seeds... [0.075s] Searching alignments... [0.043s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.106s] Building query seed array... [0.044s] Computing hash join... [0.033s] Masking low complexity seeds... [0.007s] Searching alignments... [0.092s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.048s] Building query seed array... [0.091s] Computing hash join... [0.05s] Masking low complexity seeds... [0.025s] Searching alignments... [0.024s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.075s] Building query seed array... [0.035s] Computing hash join... [0.016s] Masking low complexity seeds... [0.047s] Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.039s] Building query seed array... [0.039s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.035s] Building query seed array... [0.023s] Computing hash join... [0.02s] Masking low complexity seeds... [0.011s] Searching alignments... [0.032s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.023s] Building query seed array... [0.028s] Computing hash join... [0.018s] Masking low complexity seeds... [0.016s] Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.043s] Building query seed array... [0.035s] Computing hash join... [0.015s] Masking low complexity seeds... [0.019s] Searching alignments... [0.044s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.043s] Building query seed array... [0.035s] Computing hash join... [0.02s] Masking low complexity seeds... [0.025s] Searching alignments... [0.04s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.039s] Building query seed array... [0.047s] Computing hash join... [0.016s] Masking low complexity seeds... [0.026s] Searching alignments... [0.043s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.035s] Building query seed array... [0.035s] Computing hash join... [0.019s] Masking low complexity seeds... [0.023s] Searching alignments... [0.035s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.039s] Building query seed array... [0.031s] Computing hash join... [0.01s] Masking low complexity seeds... [0.018s] Searching alignments... [0.037s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.027s] Building query seed array... [0.019s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.019s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.103s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.039s] Building query seed array... [0.039s] Computing hash join... [0.023s] Masking low complexity seeds... [0.023s] Searching alignments... [0.071s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.055s] Building query seed array... [0.032s] Computing hash join... [0.038s] Masking low complexity seeds... [0.02s] Searching alignments... [0.045s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.041s] Building query seed array... [0.044s] Computing hash join... [0.019s] Masking low complexity seeds... [0.023s] Searching alignments... [0.051s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.032s] Building query seed array... [0.027s] Computing hash join... [0.027s] Masking low complexity seeds... [0.023s] Searching alignments... [0.053s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.029s] Building query seed array... [0.04s] Computing hash join... [0.023s] Masking low complexity seeds... [0.023s] Searching alignments... [0.051s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.039s] Building query seed array... [0.036s] Computing hash join... [0.022s] Masking low complexity seeds... [0.023s] Searching alignments... [0.047s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.031s] Building query seed array... [0.047s] Computing hash join... [0.023s] Masking low complexity seeds... [0.023s] Searching alignments... [0.059s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... [1.306s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 14.791s Reported 390 pairwise alignments, 390 HSPs. 40 queries aligned. + diamond blastp --ignore-warnings --threads 1 --db test/L.faa.diamond --query test/C2.faa --out /tmp/tmp.A8efFsAV1o/C2.faa.vs.L.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.11.165 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.A8efFsAV1o #Target sequences to report alignments for: 25 Opening the database... [0.005s] Database: test/L.faa.diamond (type: Diamond database, sequences: 40, letters: 26652) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] Masking queries... [0.054s] Algorithm: Double-indexed Building query histograms... [0.025s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0.025s] Initializing temporary storage... [0.011s] Building reference histograms... [0.076s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.043s] Building query seed array... [0.027s] Computing hash join... [0.019s] Masking low complexity seeds... [0.015s] Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.047s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.045s] Building query seed array... [0.035s] Computing hash join... [0.018s] Masking low complexity seeds... [0.02s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.05s] Building query seed array... [0.035s] Computing hash join... [0.015s] Masking low complexity seeds... [0.023s] Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.036s] Building query seed array... [0.046s] Computing hash join... [0.011s] Masking low complexity seeds... [0.023s] Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.036s] Building query seed array... [0.035s] Computing hash join... [0.018s] Masking low complexity seeds... [0.019s] Searching alignments... [0.024s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.043s] Building query seed array... [0.034s] Computing hash join... [0.011s] Masking low complexity seeds... [0.038s] Searching alignments... [0.031s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.046s] Building query seed array... [0.039s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.029s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.048s] Building query seed array... [0.033s] Computing hash join... [0.027s] Masking low complexity seeds... [0.019s] Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.039s] Building query seed array... [0.042s] Computing hash join... [0.018s] Masking low complexity seeds... [0.019s] Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.061s] Building query seed array... [0.052s] Computing hash join... [0.031s] Masking low complexity seeds... [0.026s] Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.039s] Building query seed array... [0.053s] Computing hash join... [0.015s] Masking low complexity seeds... [0.031s] Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.038s] Building query seed array... [0.047s] Computing hash join... [0.023s] Masking low complexity seeds... [0.023s] Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.04s] Building query seed array... [0.035s] Computing hash join... [0.026s] Masking low complexity seeds... [0.019s] Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.052s] Building query seed array... [0.061s] Computing hash join... [0.023s] Masking low complexity seeds... [0.019s] Searching alignments... [0.031s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.037s] Building query seed array... [0.039s] Computing hash join... [0.023s] Masking low complexity seeds... [0.023s] Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.044s] Building query seed array... [0.042s] Computing hash join... [0.015s] Masking low complexity seeds... [0.019s] Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.05s] Building query seed array... [0.039s] Computing hash join... [0.02s] Masking low complexity seeds... [0.029s] Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.038s] Building query seed array... [0.035s] Computing hash join... [0.023s] Masking low complexity seeds... [0.019s] Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.059s] Building query seed array... [0.043s] Computing hash join... [0.023s] Masking low complexity seeds... [0.019s] Searching alignments... [0.031s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.041s] Building query seed array... [0.043s] Computing hash join... [0.023s] Masking low complexity seeds... [0.023s] Searching alignments... [0.04s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.041s] Building query seed array... [0.039s] Computing hash join... [0.023s] Masking low complexity seeds... [0.023s] Searching alignments... [0.031s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.05s] Building query seed array... [0.054s] Computing hash join... [0.023s] Masking low complexity seeds... [0.023s] Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.046s] Building query seed array... [0.043s] Computing hash join... [0.015s] Masking low complexity seeds... [0.027s] Searching alignments... [0.029s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.043s] Building query seed array... [0.042s] Computing hash join... [0.011s] Masking low complexity seeds... [0.014s] Searching alignments... [0.031s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.041s] Building query seed array... [0.031s] Computing hash join... [0.023s] Masking low complexity seeds... [0.023s] Searching alignments... [0.031s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.041s] Building query seed array... [0.043s] Computing hash join... [0.019s] Masking low complexity seeds... [0.023s] Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.05s] Building query seed array... [0.03s] Computing hash join... [0.023s] Masking low complexity seeds... [0.039s] Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.07s] Building query seed array... [0.056s] Computing hash join... [0.042s] Masking low complexity seeds... [0.043s] Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.034s] Building query seed array... [0.031s] Computing hash join... [0.023s] Masking low complexity seeds... [0.031s] Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.04s] Building query seed array... [0.039s] Computing hash join... [0.023s] Masking low complexity seeds... [0.019s] Searching alignments... [0.05s] Deallocating memory... [0.001s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.071s] Building query seed array... [0.059s] Computing hash join... [0.027s] Masking low complexity seeds... [0.027s] Searching alignments... [0.031s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.043s] Building query seed array... [0.051s] Computing hash join... [0.027s] Masking low complexity seeds... [0.031s] Searching alignments... [0.046s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.05s] Building query seed array... [0.055s] Computing hash join... [0.026s] Masking low complexity seeds... [0.031s] Searching alignments... [0.046s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.069s] Building query seed array... [0.083s] Computing hash join... [0.035s] Masking low complexity seeds... [0.027s] Searching alignments... [0.046s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.104s] Building query seed array... [0.043s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.032s] Building query seed array... [0.033s] Computing hash join... [0.017s] Masking low complexity seeds... [0.018s] Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.033s] Building query seed array... [0.043s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.024s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.045s] Building query seed array... [0.047s] Computing hash join... [0.022s] Masking low complexity seeds... [0.031s] Searching alignments... [0.033s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.044s] Building query seed array... [0.042s] Computing hash join... [0.027s] Masking low complexity seeds... [0.035s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.042s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.019s] Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.023s] Building query seed array... [0.039s] Computing hash join... [0.013s] Masking low complexity seeds... [0.038s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.098s] Building query seed array... [0.039s] Computing hash join... [0.011s] Masking low complexity seeds... [0.034s] Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.05s] Building query seed array... [0.042s] Computing hash join... [0.019s] Masking low complexity seeds... [0.021s] Searching alignments... [0.035s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.042s] Building query seed array... [0.034s] Computing hash join... [0.019s] Masking low complexity seeds... [0.02s] Searching alignments... [0.042s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.027s] Building query seed array... [0.038s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.043s] Building query seed array... [0.023s] Computing hash join... [0.023s] Masking low complexity seeds... [0.022s] Searching alignments... [0.047s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.036s] Building query seed array... [0.042s] Computing hash join... [0.016s] Masking low complexity seeds... [0.035s] Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.039s] Building query seed array... [0.024s] Computing hash join... [0.026s] Masking low complexity seeds... [0.019s] Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.035s] Building query seed array... [0.036s] Computing hash join... [0.038s] Masking low complexity seeds... [0.03s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.035s] Building query seed array... [0.038s] Computing hash join... [0.023s] Masking low complexity seeds... [0.011s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.043s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.051s] Building query seed array... [0.042s] Computing hash join... [0.023s] Masking low complexity seeds... [0.015s] Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.048s] Building query seed array... [0.036s] Computing hash join... [0.03s] Masking low complexity seeds... [0.016s] Searching alignments... [0.046s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.043s] Building query seed array... [0.028s] Computing hash join... [0.019s] Masking low complexity seeds... [0.023s] Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.053s] Building query seed array... [0.035s] Computing hash join... [0.031s] Masking low complexity seeds... [0.039s] Searching alignments... [0.046s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.048s] Building query seed array... [0.038s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.023s] Building query seed array... [0.018s] Computing hash join... [0.051s] Masking low complexity seeds... [0.048s] Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.056s] Building query seed array... [0.047s] Computing hash join... [0.008s] Masking low complexity seeds... [0.007s] Searching alignments... [0.055s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.024s] Building query seed array... [0.023s] Computing hash join... [0.012s] Masking low complexity seeds... [0.01s] Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.029s] Building query seed array... [0.015s] Computing hash join... [0.007s] Masking low complexity seeds... [0.01s] Searching alignments... [0.029s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.025s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.021s] Building query seed array... [0.018s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.042s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.055s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.023s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... [0.088s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0.004s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 10.864s Reported 1 pairwise alignments, 1 HSPs. 1 queries aligned. + diamond blastp --threads 1 --db test/C2.faa.diamond --query test/L.faa --out /tmp/tmp.A8efFsAV1o/L.faa.vs.C2.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.11.165 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.A8efFsAV1o #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/C2.faa.diamond (type: Diamond database, sequences: 2, letters: 726) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0.003s] Masking queries... [0.055s] Algorithm: Double-indexed Building query histograms... [0.077s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0.016s] Initializing temporary storage... [0.01s] Building reference histograms... [0.06s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.046s] Building query seed array... [0.04s] Computing hash join... [0.027s] Masking low complexity seeds... [0.015s] Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.031s] Building query seed array... [0.046s] Computing hash join... [0.018s] Masking low complexity seeds... [0.019s] Searching alignments... [0.032s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.035s] Building query seed array... [0.044s] Computing hash join... [0.015s] Masking low complexity seeds... [0.019s] Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.033s] Building query seed array... [0.036s] Computing hash join... [0.022s] Masking low complexity seeds... [0.015s] Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.034s] Building query seed array... [0.039s] Computing hash join... [0.018s] Masking low complexity seeds... [0.019s] Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.046s] Building query seed array... [0.043s] Computing hash join... [0.018s] Masking low complexity seeds... [0.023s] Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.051s] Building query seed array... [0.036s] Computing hash join... [0.021s] Masking low complexity seeds... [0.019s] Searching alignments... [0.031s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.05s] Building query seed array... [0.044s] Computing hash join... [0.023s] Masking low complexity seeds... [0.023s] Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.045s] Building query seed array... [0.044s] Computing hash join... [0.022s] Masking low complexity seeds... [0.02s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.047s] Building query seed array... [0.04s] Computing hash join... [0.018s] Masking low complexity seeds... [0.023s] Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.029s] Building query seed array... [0.047s] Computing hash join... [0.035s] Masking low complexity seeds... [0.016s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.067s] Building query seed array... [0.032s] Computing hash join... [0.015s] Masking low complexity seeds... [0.042s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.052s] Building query seed array... [0.044s] Computing hash join... [0.023s] Masking low complexity seeds... [0.019s] Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.046s] Building query seed array... [0.032s] Computing hash join... [0.038s] Masking low complexity seeds... [0.031s] Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.053s] Building query seed array... [0.048s] Computing hash join... [0.021s] Masking low complexity seeds... [0.02s] Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.059s] Building query seed array... [0.06s] Computing hash join... [0.014s] Masking low complexity seeds... [0.015s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.047s] Building query seed array... [0.032s] Computing hash join... [0.031s] Masking low complexity seeds... [0.023s] Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.03s] Building query seed array... [0.04s] Computing hash join... [0.014s] Masking low complexity seeds... [0.013s] Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.029s] Building query seed array... [0.039s] Computing hash join... [0.019s] Masking low complexity seeds... [0.019s] Searching alignments... [0.032s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.04s] Building query seed array... [0.032s] Computing hash join... [0.019s] Masking low complexity seeds... [0.019s] Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.038s] Building query seed array... [0.044s] Computing hash join... [0.022s] Masking low complexity seeds... [0.019s] Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.041s] Building query seed array... [0.044s] Computing hash join... [0.022s] Masking low complexity seeds... [0.019s] Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.03s] Computing hash join... [0.011s] Masking low complexity seeds... [0.031s] Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.025s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.025s] Building query seed array... [0.051s] Computing hash join... [0.027s] Masking low complexity seeds... [0.015s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.029s] Building query seed array... [0.027s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.056s] Building query seed array... [0.035s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.028s] Building query seed array... [0.032s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.025s] Building query seed array... [0.027s] Computing hash join... [0.039s] Masking low complexity seeds... [0.015s] Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.029s] Building query seed array... [0.035s] Computing hash join... [0.035s] Masking low complexity seeds... [0.02s] Searching alignments... [0.033s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.045s] Building query seed array... [0.04s] Computing hash join... [0.022s] Masking low complexity seeds... [0.019s] Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.041s] Building query seed array... [0.047s] Computing hash join... [0.019s] Masking low complexity seeds... [0.015s] Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.033s] Building query seed array... [0.079s] Computing hash join... [0.015s] Masking low complexity seeds... [0.019s] Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.031s] Building query seed array... [0.027s] Computing hash join... [0.015s] Masking low complexity seeds... [0.019s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.011s] Building query seed array... [0.035s] Computing hash join... [0.015s] Masking low complexity seeds... [0.019s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.043s] Building query seed array... [0.019s] Computing hash join... [0.011s] Masking low complexity seeds... [0.019s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.027s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.035s] Building query seed array... [0.035s] Computing hash join... [0.019s] Masking low complexity seeds... [0.019s] Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.031s] Building query seed array... [0.027s] Computing hash join... [0.015s] Masking low complexity seeds... [0.012s] Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.031s] Building query seed array... [0.039s] Computing hash join... [0.017s] Masking low complexity seeds... [0.013s] Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.039s] Building query seed array... [0.035s] Computing hash join... [0.019s] Masking low complexity seeds... [0.019s] Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.044s] Building query seed array... [0.046s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.039s] Building query seed array... [0.043s] Computing hash join... [0.015s] Masking low complexity seeds... [0.023s] Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.043s] Building query seed array... [0.047s] Computing hash join... [0.023s] Masking low complexity seeds... [0.019s] Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.035s] Building query seed array... [0.051s] Computing hash join... [0.019s] Masking low complexity seeds... [0.027s] Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.035s] Building query seed array... [0.029s] Computing hash join... [0.034s] Masking low complexity seeds... [0.031s] Searching alignments... [0.032s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.053s] Building query seed array... [0.04s] Computing hash join... [0.018s] Masking low complexity seeds... [0.011s] Searching alignments... [0.025s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.052s] Building query seed array... [0.048s] Computing hash join... [0.019s] Masking low complexity seeds... [0.018s] Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.034s] Building query seed array... [0.045s] Computing hash join... [0.018s] Masking low complexity seeds... [0.018s] Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.045s] Building query seed array... [0.04s] Computing hash join... [0.019s] Masking low complexity seeds... [0.034s] Searching alignments... [0.035s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.068s] Building query seed array... [0.048s] Computing hash join... [0.023s] Masking low complexity seeds... [0.027s] Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.049s] Building query seed array... [0.05s] Computing hash join... [0.024s] Masking low complexity seeds... [0.035s] Searching alignments... [0.039s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.065s] Building query seed array... [0.052s] Computing hash join... [0.018s] Masking low complexity seeds... [0.031s] Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.045s] Building query seed array... [0.059s] Computing hash join... [0.031s] Masking low complexity seeds... [0.035s] Searching alignments... [0.043s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.041s] Building query seed array... [0.059s] Computing hash join... [0.035s] Masking low complexity seeds... [0.027s] Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.061s] Building query seed array... [0.059s] Computing hash join... [0.051s] Masking low complexity seeds... [0.023s] Searching alignments... [0.038s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.041s] Building query seed array... [0.024s] Computing hash join... [0.014s] Masking low complexity seeds... [0.015s] Searching alignments... [0.039s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.041s] Building query seed array... [0.055s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.025s] Computing hash join... [0.011s] Masking low complexity seeds... [0.014s] Searching alignments... [0.038s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.042s] Building query seed array... [0.029s] Computing hash join... [0.006s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.031s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.038s] Building query seed array... [0.035s] Computing hash join... [0.012s] Masking low complexity seeds... [0.018s] Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.03s] Building query seed array... [0.032s] Computing hash join... [0.019s] Masking low complexity seeds... [0.011s] Searching alignments... [0.02s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... [0.067s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 10.164s Reported 1 pairwise alignments, 1 HSPs. 1 queries aligned. + diamond blastp --ignore-warnings --threads 1 --db test/M.faa.diamond --query test/C2.faa --out /tmp/tmp.A8efFsAV1o/C2.faa.vs.M.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.11.165 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.A8efFsAV1o #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/M.faa.diamond (type: Diamond database, sequences: 40, letters: 26963) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] Masking queries... [0.031s] Algorithm: Double-indexed Building query histograms... [0.037s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0.013s] Initializing temporary storage... [0.011s] Building reference histograms... [0.077s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.044s] Building query seed array... [0.027s] Computing hash join... [0.007s] Masking low complexity seeds... [0.008s] Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.024s] Building query seed array... [0.03s] Computing hash join... [0.013s] Masking low complexity seeds... [0.017s] Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.037s] Building query seed array... [0.031s] Computing hash join... [0.014s] Masking low complexity seeds... [0.02s] Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.052s] Building query seed array... [0.034s] Computing hash join... [0.02s] Masking low complexity seeds... [0.019s] Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.032s] Building query seed array... [0.026s] Computing hash join... [0.018s] Masking low complexity seeds... [0.011s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.027s] Building query seed array... [0.034s] Computing hash join... [0.013s] Masking low complexity seeds... [0.01s] Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.035s] Building query seed array... [0.031s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.037s] Building query seed array... [0.027s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.033s] Building query seed array... [0.032s] Computing hash join... [0.016s] Masking low complexity seeds... [0.019s] Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.04s] Building query seed array... [0.042s] Computing hash join... [0.024s] Masking low complexity seeds... [0.026s] Searching alignments... [0.024s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.042s] Building query seed array... [0.034s] Computing hash join... [0.019s] Masking low complexity seeds... [0.019s] Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.047s] Building query seed array... [0.043s] Computing hash join... [0.022s] Masking low complexity seeds... [0.023s] Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.046s] Building query seed array... [0.038s] Computing hash join... [0.021s] Masking low complexity seeds... [0.017s] Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.03s] Building query seed array... [0.027s] Computing hash join... [0.02s] Masking low complexity seeds... [0.019s] Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.033s] Building query seed array... [0.035s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.038s] Building query seed array... [0.038s] Computing hash join... [0.019s] Masking low complexity seeds... [0.015s] Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.042s] Building query seed array... [0.038s] Computing hash join... [0.015s] Masking low complexity seeds... [0.027s] Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.034s] Building query seed array... [0.038s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.049s] Building query seed array... [0.039s] Computing hash join... [0.023s] Masking low complexity seeds... [0.015s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.032s] Building query seed array... [0.034s] Computing hash join... [0.009s] Masking low complexity seeds... [0.025s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.052s] Building query seed array... [0.033s] Computing hash join... [0.015s] Masking low complexity seeds... [0.016s] Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.036s] Building query seed array... [0.038s] Computing hash join... [0.017s] Masking low complexity seeds... [0.026s] Searching alignments... [0.031s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.052s] Building query seed array... [0.043s] Computing hash join... [0.019s] Masking low complexity seeds... [0.023s] Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.042s] Building query seed array... [0.035s] Computing hash join... [0.027s] Masking low complexity seeds... [0.022s] Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.027s] Building query seed array... [0.038s] Computing hash join... [0.014s] Masking low complexity seeds... [0.02s] Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.053s] Building query seed array... [0.069s] Computing hash join... [0.033s] Masking low complexity seeds... [0.026s] Searching alignments... [0.035s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.073s] Building query seed array... [0.032s] Computing hash join... [0.034s] Masking low complexity seeds... [0.038s] Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.045s] Building query seed array... [0.071s] Computing hash join... [0.015s] Masking low complexity seeds... [0.033s] Searching alignments... [0.036s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.049s] Building query seed array... [0.063s] Computing hash join... [0.019s] Masking low complexity seeds... [0.019s] Searching alignments... [0.033s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.053s] Building query seed array... [0.074s] Computing hash join... [0.011s] Masking low complexity seeds... [0.035s] Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.066s] Building query seed array... [0.007s] Computing hash join... [0.033s] Masking low complexity seeds... [0.031s] Searching alignments... [0.042s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.069s] Building query seed array... [0.008s] Computing hash join... [0.03s] Masking low complexity seeds... [0.031s] Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.049s] Building query seed array... [0.024s] Computing hash join... [0.022s] Masking low complexity seeds... [0.046s] Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.028s] Building query seed array... [0.035s] Computing hash join... [0.031s] Masking low complexity seeds... [0.003s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.044s] Building query seed array... [0.034s] Computing hash join... [0.016s] Masking low complexity seeds... [0.004s] Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.035s] Building query seed array... [0.026s] Computing hash join... [0.019s] Masking low complexity seeds... [0.015s] Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.035s] Building query seed array... [0.035s] Computing hash join... [0.019s] Masking low complexity seeds... [0.019s] Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.043s] Building query seed array... [0.038s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.035s] Building query seed array... [0.047s] Computing hash join... [0.015s] Masking low complexity seeds... [0.019s] Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.047s] Building query seed array... [0.042s] Computing hash join... [0.023s] Masking low complexity seeds... [0.019s] Searching alignments... [0.044s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.036s] Building query seed array... [0.054s] Computing hash join... [0.023s] Masking low complexity seeds... [0.019s] Searching alignments... [0.038s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.045s] Building query seed array... [0.043s] Computing hash join... [0.023s] Masking low complexity seeds... [0.027s] Searching alignments... [0.044s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.055s] Building query seed array... [0.043s] Computing hash join... [0.019s] Masking low complexity seeds... [0.027s] Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.038s] Building query seed array... [0.031s] Computing hash join... [0.016s] Masking low complexity seeds... [0.019s] Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.046s] Building query seed array... [0.038s] Computing hash join... [0.019s] Masking low complexity seeds... [0.019s] Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.043s] Building query seed array... [0.043s] Computing hash join... [0.015s] Masking low complexity seeds... [0.019s] Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.039s] Building query seed array... [0.031s] Computing hash join... [0.023s] Masking low complexity seeds... [0.019s] Searching alignments... [0.033s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.038s] Building query seed array... [0.034s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.042s] Building query seed array... [0.034s] Computing hash join... [0.012s] Masking low complexity seeds... [0.03s] Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.059s] Building query seed array... [0.034s] Computing hash join... [0.019s] Masking low complexity seeds... [0.019s] Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.046s] Building query seed array... [0.055s] Computing hash join... [0.051s] Masking low complexity seeds... [0.059s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.044s] Building query seed array... [0.035s] Computing hash join... [0.019s] Masking low complexity seeds... [0.039s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.055s] Building query seed array... [0.031s] Computing hash join... [0.019s] Masking low complexity seeds... [0.047s] Searching alignments... [0.055s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.051s] Building query seed array... [0.039s] Computing hash join... [0.039s] Masking low complexity seeds... [0.007s] Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.075s] Building query seed array... [0.031s] Computing hash join... [0.011s] Masking low complexity seeds... [0.039s] Searching alignments... [0.051s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.092s] Building query seed array... [0.082s] Computing hash join... [0.011s] Masking low complexity seeds... [0.018s] Searching alignments... [0.038s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.063s] Building query seed array... [0.043s] Computing hash join... [0.015s] Masking low complexity seeds... [0.023s] Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.029s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.025s] Building query seed array... [0.031s] Computing hash join... [0.012s] Masking low complexity seeds... [0.014s] Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.029s] Building query seed array... [0.031s] Computing hash join... [0.019s] Masking low complexity seeds... [0.015s] Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.033s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.025s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.03s] Building query seed array... [0.033s] Computing hash join... [0.017s] Masking low complexity seeds... [0.019s] Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.033s] Building query seed array... [0.05s] Computing hash join... [0.017s] Masking low complexity seeds... [0.018s] Searching alignments... [0.03s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... [0.064s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0.004s] Closing the database... [0s] Cleaning up... [0s] Total time = 10.485s Reported 1 pairwise alignments, 1 HSPs. 1 queries aligned. + diamond blastp --threads 1 --db test/C2.faa.diamond --query test/M.faa --out /tmp/tmp.A8efFsAV1o/M.faa.vs.C2.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.11.165 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.A8efFsAV1o #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/C2.faa.diamond (type: Diamond database, sequences: 2, letters: 726) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0.006s] Loading query sequences... [0s] Masking queries... [0.026s] Algorithm: Double-indexed Building query histograms... [0.056s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0.012s] Initializing temporary storage... [0.007s] Building reference histograms... [0.027s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.043s] Building query seed array... [0.035s] Computing hash join... [0.015s] Masking low complexity seeds... [0.023s] Searching alignments... [0.066s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.029s] Building query seed array... [0.031s] Computing hash join... [0.04s] Masking low complexity seeds... [0.051s] Searching alignments... [0.053s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.096s] Building query seed array... [0.095s] Computing hash join... [0.012s] Masking low complexity seeds... [0.013s] Searching alignments... [0.024s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.069s] Building query seed array... [0.036s] Computing hash join... [0.017s] Masking low complexity seeds... [0.017s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.033s] Building query seed array... [0.026s] Computing hash join... [0.035s] Masking low complexity seeds... [0.016s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.117s] Building query seed array... [0.019s] Computing hash join... [0.007s] Masking low complexity seeds... [0.039s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.021s] Building query seed array... [0.031s] Computing hash join... [0.083s] Masking low complexity seeds... [0.035s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.017s] Building query seed array... [0.019s] Computing hash join... [0.005s] Masking low complexity seeds... [0.013s] Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.044s] Building query seed array... [0.072s] Computing hash join... [0.035s] Masking low complexity seeds... [0.007s] Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.025s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.069s] Building query seed array... [0.027s] Computing hash join... [0.031s] Masking low complexity seeds... [0.019s] Searching alignments... [0.054s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.021s] Building query seed array... [0.035s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.029s] Building query seed array... [0.023s] Computing hash join... [0.007s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.032s] Building query seed array... [0.062s] Computing hash join... [0.024s] Masking low complexity seeds... [0.007s] Searching alignments... [0.046s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.046s] Building query seed array... [0.054s] Computing hash join... [0.019s] Masking low complexity seeds... [0.015s] Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.033s] Building query seed array... [0.052s] Computing hash join... [0.018s] Masking low complexity seeds... [0.035s] Searching alignments... [0.036s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.071s] Building query seed array... [0.044s] Computing hash join... [0.018s] Masking low complexity seeds... [0.023s] Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.081s] Building query seed array... [0.041s] Computing hash join... [0.037s] Masking low complexity seeds... [0.039s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.085s] Building query seed array... [0.044s] Computing hash join... [0.013s] Masking low complexity seeds... [0.034s] Searching alignments... [0.047s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.04s] Building query seed array... [0.039s] Computing hash join... [0.019s] Masking low complexity seeds... [0.031s] Searching alignments... [0.038s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.062s] Building query seed array... [0.018s] Computing hash join... [0.035s] Masking low complexity seeds... [0.031s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.045s] Building query seed array... [0.039s] Computing hash join... [0.015s] Masking low complexity seeds... [0.01s] Searching alignments... [0.054s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.066s] Building query seed array... [0.055s] Computing hash join... [0.011s] Masking low complexity seeds... [0.019s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.025s] Building query seed array... [0.027s] Computing hash join... [0.019s] Masking low complexity seeds... [0.023s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.051s] Building query seed array... [0.036s] Computing hash join... [0.026s] Masking low complexity seeds... [0.015s] Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.049s] Building query seed array... [0.047s] Computing hash join... [0.019s] Masking low complexity seeds... [0.019s] Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.065s] Building query seed array... [0.055s] Computing hash join... [0.023s] Masking low complexity seeds... [0.039s] Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.059s] Building query seed array... [0.051s] Computing hash join... [0.023s] Masking low complexity seeds... [0.031s] Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.069s] Building query seed array... [0.028s] Computing hash join... [0.034s] Masking low complexity seeds... [0.027s] Searching alignments... [0.042s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.048s] Building query seed array... [0.053s] Computing hash join... [0.026s] Masking low complexity seeds... [0.035s] Searching alignments... [0.038s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.041s] Building query seed array... [0.032s] Computing hash join... [0.021s] Masking low complexity seeds... [0.032s] Searching alignments... [0.058s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.071s] Building query seed array... [0.071s] Computing hash join... [0.031s] Masking low complexity seeds... [0.008s] Searching alignments... [0.051s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.036s] Building query seed array... [0.053s] Computing hash join... [0.035s] Masking low complexity seeds... [0.012s] Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.034s] Building query seed array... [0.017s] Computing hash join... [0s] Masking low complexity seeds... [0.025s] Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.039s] Building query seed array... [0.035s] Computing hash join... [0.019s] Masking low complexity seeds... [0.011s] Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.039s] Building query seed array... [0.047s] Computing hash join... [0.023s] Masking low complexity seeds... [0.019s] Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.047s] Building query seed array... [0.035s] Computing hash join... [0.015s] Masking low complexity seeds... [0.017s] Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.066s] Building query seed array... [0.028s] Computing hash join... [0.017s] Masking low complexity seeds... [0.017s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.054s] Building query seed array... [0.052s] Computing hash join... [0.023s] Masking low complexity seeds... [0.015s] Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.031s] Building query seed array... [0.046s] Computing hash join... [0.015s] Masking low complexity seeds... [0.019s] Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.03s] Building query seed array... [0.036s] Computing hash join... [0.019s] Masking low complexity seeds... [0.015s] Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.038s] Building query seed array... [0.043s] Computing hash join... [0.031s] Masking low complexity seeds... [0.034s] Searching alignments... [0.036s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.037s] Building query seed array... [0.044s] Computing hash join... [0.019s] Masking low complexity seeds... [0.023s] Searching alignments... [0.037s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.042s] Building query seed array... [0.033s] Computing hash join... [0.026s] Masking low complexity seeds... [0.035s] Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.044s] Building query seed array... [0.04s] Computing hash join... [0.015s] Masking low complexity seeds... [0.019s] Searching alignments... [0.037s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.03s] Building query seed array... [0.048s] Computing hash join... [0.019s] Masking low complexity seeds... [0.035s] Searching alignments... [0.043s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.045s] Building query seed array... [0.026s] Computing hash join... [0.026s] Masking low complexity seeds... [0.03s] Searching alignments... [0.036s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.043s] Building query seed array... [0.037s] Computing hash join... [0.009s] Masking low complexity seeds... [0.019s] Searching alignments... [0.036s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.033s] Building query seed array... [0.036s] Computing hash join... [0.015s] Masking low complexity seeds... [0.023s] Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.034s] Building query seed array... [0.052s] Computing hash join... [0.018s] Masking low complexity seeds... [0.022s] Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.04s] Building query seed array... [0.044s] Computing hash join... [0.022s] Masking low complexity seeds... [0.022s] Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.038s] Building query seed array... [0.041s] Computing hash join... [0.019s] Masking low complexity seeds... [0.019s] Searching alignments... [0.036s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.045s] Building query seed array... [0.04s] Computing hash join... [0.022s] Masking low complexity seeds... [0.01s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.044s] Building query seed array... [0.037s] Computing hash join... [0.026s] Masking low complexity seeds... [0.015s] Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.027s] Building query seed array... [0.028s] Computing hash join... [0.034s] Masking low complexity seeds... [0.024s] Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.038s] Building query seed array... [0.032s] Computing hash join... [0.019s] Masking low complexity seeds... [0.016s] Searching alignments... [0.035s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.037s] Building query seed array... [0.04s] Computing hash join... [0.022s] Masking low complexity seeds... [0.015s] Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.046s] Building query seed array... [0.039s] Computing hash join... [0.02s] Masking low complexity seeds... [0.019s] Searching alignments... [0.036s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.049s] Building query seed array... [0.04s] Computing hash join... [0.022s] Masking low complexity seeds... [0.027s] Searching alignments... [0.038s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.047s] Building query seed array... [0.043s] Computing hash join... [0.027s] Masking low complexity seeds... [0.019s] Searching alignments... [0.031s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.035s] Building query seed array... [0.039s] Computing hash join... [0.016s] Masking low complexity seeds... [0.019s] Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.035s] Building query seed array... [0.031s] Computing hash join... [0.019s] Masking low complexity seeds... [0.015s] Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.038s] Building query seed array... [0.047s] Computing hash join... [0.015s] Masking low complexity seeds... [0.019s] Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.033s] Building query seed array... [0.043s] Computing hash join... [0.031s] Masking low complexity seeds... [0.019s] Searching alignments... [0.03s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... [0.086s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 11.211s Reported 1 pairwise alignments, 1 HSPs. 1 queries aligned. + rm -rf /tmp/tmp.A8efFsAV1o make[1]: Leaving directory '/build/reproducible-path/diamond-aligner-2.1.11' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/diamond-aligner/ cd obj-x86_64-linux-gnu && make -j20 install DESTDIR=/build/reproducible-path/diamond-aligner-2.1.11/debian/diamond-aligner AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/diamond-aligner-2.1.11/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/diamond-aligner-2.1.11 -B/build/reproducible-path/diamond-aligner-2.1.11/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/diamond-aligner-2.1.11/obj-x86_64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/diamond-aligner-2.1.11/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /build/reproducible-path/diamond-aligner-2.1.11/debian/diamond-aligner/usr/bin/diamond make[1]: Leaving directory '/build/reproducible-path/diamond-aligner-2.1.11/obj-x86_64-linux-gnu' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism debian/rules override_dh_compress make[1]: Entering directory '/build/reproducible-path/diamond-aligner-2.1.11' dh_compress --exclude=.pdf make[1]: Leaving directory '/build/reproducible-path/diamond-aligner-2.1.11' dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'diamond-aligner-dbgsym' in '../diamond-aligner-dbgsym_2.1.11-2_amd64.deb'. dpkg-deb: building package 'diamond-aligner' in '../diamond-aligner_2.1.11-2_amd64.deb'. dpkg-genbuildinfo --build=binary -O../diamond-aligner_2.1.11-2_amd64.buildinfo dpkg-genchanges --build=binary -O../diamond-aligner_2.1.11-2_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/953146/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/953146/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/953146 and its subdirectories I: Current time: Tue Mar 11 13:45:12 +14 2025 I: pbuilder-time-stamp: 1741650312 + false + set +x Mon Mar 10 23:45:12 UTC 2025 I: Signing ./b2/diamond-aligner_2.1.11-2_amd64.buildinfo as diamond-aligner_2.1.11-2_amd64.buildinfo.asc Mon Mar 10 23:45:12 UTC 2025 I: Signed ./b2/diamond-aligner_2.1.11-2_amd64.buildinfo as ./b2/diamond-aligner_2.1.11-2_amd64.buildinfo.asc Mon Mar 10 23:45:12 UTC 2025 - build #2 for diamond-aligner/unstable/amd64 on ionos1-amd64 done. Starting cleanup. All cleanup done. Mon Mar 10 23:45:12 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-9XoPtzfs, removing. /srv/reproducible-results/rbuild-debian/r-b-build.PH0nphoP: total 660 drwxr-xr-x 2 jenkins jenkins 4096 Mar 10 22:54 b1 drwxr-xr-x 2 jenkins jenkins 4096 Mar 10 23:45 b2 -rw-r--r-- 1 jenkins jenkins 2373 Mar 9 10:01 diamond-aligner_2.1.11-2.dsc -rw------- 1 jenkins jenkins 655663 Mar 10 22:54 rbuildlog.wIb0qG0 /srv/reproducible-results/rbuild-debian/r-b-build.PH0nphoP/b1: total 42204 -rw-r--r-- 1 jenkins jenkins 651841 Mar 10 22:54 build.log -rw-r--r-- 1 jenkins jenkins 39684664 Mar 10 22:54 diamond-aligner-dbgsym_2.1.11-2_amd64.deb -rw-r--r-- 1 jenkins jenkins 138004 Mar 10 22:54 diamond-aligner_2.1.11-2.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2373 Mar 10 22:54 diamond-aligner_2.1.11-2.dsc -rw-r--r-- 1 jenkins jenkins 5997 Mar 10 22:54 diamond-aligner_2.1.11-2_amd64.buildinfo -rw-r--r-- 1 jenkins jenkins 6879 Mar 10 22:54 diamond-aligner_2.1.11-2_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1510 Mar 10 22:54 diamond-aligner_2.1.11-2_amd64.changes -rw-r--r-- 1 jenkins jenkins 2648236 Mar 10 22:54 diamond-aligner_2.1.11-2_amd64.deb -rw-r--r-- 1 jenkins jenkins 1340 Mar 10 22:54 diamond-aligner_2.1.11-2_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.PH0nphoP/b2: total 42164 -rw-r--r-- 1 jenkins jenkins 670302 Mar 10 23:45 build.log -rw-r--r-- 1 jenkins jenkins 39684664 Mar 10 23:45 diamond-aligner-dbgsym_2.1.11-2_amd64.deb -rw-r--r-- 1 jenkins jenkins 138004 Mar 10 23:45 diamond-aligner_2.1.11-2.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2373 Mar 10 23:45 diamond-aligner_2.1.11-2.dsc -rw-r--r-- 1 jenkins jenkins 5986 Mar 10 23:45 diamond-aligner_2.1.11-2_amd64.buildinfo -rw-r--r-- 1 jenkins jenkins 6868 Mar 10 23:45 diamond-aligner_2.1.11-2_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1510 Mar 10 23:45 diamond-aligner_2.1.11-2_amd64.changes -rw-r--r-- 1 jenkins jenkins 2648236 Mar 10 23:45 diamond-aligner_2.1.11-2_amd64.deb -rw-r--r-- 1 jenkins jenkins 1340 Mar 10 23:45 diamond-aligner_2.1.11-2_source.changes Mon Mar 10 23:45:14 UTC 2025 I: Deleting $TMPDIR on ionos1-amd64.debian.net. Mon Mar 10 23:45:15 UTC 2025 I: diamond-aligner_2.1.11-2_amd64.changes: Format: 1.8 Date: Sun, 09 Mar 2025 10:47:09 +0100 Source: diamond-aligner Binary: diamond-aligner diamond-aligner-dbgsym Architecture: amd64 Version: 2.1.11-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: diamond-aligner - accelerated BLAST compatible local sequence aligner Closes: 1099828 Changes: diamond-aligner (2.1.11-2) unstable; urgency=medium . [ Gui-Yue ] * fix memcpy not defined on riscv64. (Closes: #1099828) Checksums-Sha1: 1609e4601cb6f4b014f86b077010ca70591c2a4b 39684664 diamond-aligner-dbgsym_2.1.11-2_amd64.deb 840df3cb1182dab030482cb02ed5bb0bf70866d3 5997 diamond-aligner_2.1.11-2_amd64.buildinfo e98982b0ec88c30587c62aec911c67237bf47e04 2648236 diamond-aligner_2.1.11-2_amd64.deb Checksums-Sha256: 189a6a2ca37445582a5a8d9b6f1649495f36a5685d872d36997877e086f2284f 39684664 diamond-aligner-dbgsym_2.1.11-2_amd64.deb 4e2cd0995ebbc692fb2d54d258819a1adcd2d1ff8c13ff1e63d9beee60b30478 5997 diamond-aligner_2.1.11-2_amd64.buildinfo 263795dfdb3677cfbab8d9aba6a516113cea4086cb18ab82abc44edbd6bcb344 2648236 diamond-aligner_2.1.11-2_amd64.deb Files: c1bbf8818ba8bf0ebea4715ce3add32d 39684664 debug optional diamond-aligner-dbgsym_2.1.11-2_amd64.deb 02cdd93ea903676adee21f005b93d425 5997 science optional diamond-aligner_2.1.11-2_amd64.buildinfo 69f2d29e06e27da369c28d4b5deb3586 2648236 science optional diamond-aligner_2.1.11-2_amd64.deb removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/diamond-aligner_2.1.11-1.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/diamond-aligner_2.1.11-2.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/diamond-aligner_2.1.11-1.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/diamond-aligner_2.1.11-2.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/amd64/diamond-aligner_2.1.11-1.build1.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/amd64/diamond-aligner_2.1.11-1.build2.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/buildinfo/unstable/amd64/diamond-aligner_2.1.11-1_amd64.buildinfo' removed '/var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/diamond-aligner_2.1.11-1.diff.gz' Diff of the two buildlogs: -- --- b1/build.log 2025-03-10 22:54:00.344590105 +0000 +++ b2/build.log 2025-03-10 23:45:13.790092326 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sun Apr 12 17:13:44 -12 2026 -I: pbuilder-time-stamp: 1776057224 +I: Current time: Tue Mar 11 12:54:03 +14 2025 +I: pbuilder-time-stamp: 1741647243 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -25,52 +25,84 @@ dpkg-source: info: applying fix_missing_cstring_riscv64.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/1134213/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/953146/tmp/hooks/D01_modify_environment starting +debug: Running on ionos1-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Mar 10 22:54 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/953146/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/953146/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='59c8965be22f436d8ef9a7f48483df9a' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='1134213' - PS1='# ' - PS2='> ' + INVOCATION_ID=da77e844034a4635850c04354c547d46 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=953146 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.PH0nphoP/pbuilderrc_oPKV --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.PH0nphoP/b1 --logfile b1/build.log diamond-aligner_2.1.11-2.dsc' - SUDO_GID='111' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://213.165.73.152:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.PH0nphoP/pbuilderrc_TOfg --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.PH0nphoP/b2 --logfile b2/build.log diamond-aligner_2.1.11-2.dsc' + SUDO_GID=110 + SUDO_UID=105 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://46.16.76.132:3128 I: uname -a - Linux ionos15-amd64 6.12.12+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.12-1~bpo12+1 (2025-02-23) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-31-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.128-1 (2025-02-07) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Mar 4 2025 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/1134213/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Mar 4 11:20 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/953146/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -173,7 +205,7 @@ Get: 59 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 60 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.24.1 [920 kB] Get: 61 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] -Fetched 41.6 MB in 4s (9616 kB/s) +Fetched 41.6 MB in 5s (7899 kB/s) Preconfiguring packages ... Selecting previously unselected package libproc2-0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19783 files and directories currently installed.) @@ -432,7 +464,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/diamond-aligner-2.1.11/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../diamond-aligner_2.1.11-2_source.changes +I: user script /srv/workspace/pbuilder/953146/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/953146/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/diamond-aligner-2.1.11/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../diamond-aligner_2.1.11-2_source.changes dpkg-buildpackage: info: source package diamond-aligner dpkg-buildpackage: info: source version 2.1.11-2 dpkg-buildpackage: info: source distribution unstable @@ -491,8 +527,8 @@ -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE --- Configuring done (1.6s) --- Generating done (0.0s) +-- Configuring done (15.0s) +-- Generating done (0.7s) CMake Warning: Manually-specified variables were not used by the project: @@ -508,84 +544,84 @@ -- Build files have been written to: /build/reproducible-path/diamond-aligner-2.1.11/obj-x86_64-linux-gnu make[1]: Leaving directory '/build/reproducible-path/diamond-aligner-2.1.11' dh_auto_build - cd obj-x86_64-linux-gnu && make -j42 "INSTALL=install --strip-program=true" VERBOSE=1 + cd obj-x86_64-linux-gnu && make -j20 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/diamond-aligner-2.1.11/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/diamond-aligner-2.1.11 -B/build/reproducible-path/diamond-aligner-2.1.11/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/diamond-aligner-2.1.11/obj-x86_64-linux-gnu/CMakeFiles /build/reproducible-path/diamond-aligner-2.1.11/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/diamond-aligner-2.1.11/obj-x86_64-linux-gnu' make -f CMakeFiles/arch_generic.dir/build.make CMakeFiles/arch_generic.dir/depend -make -f CMakeFiles/arch_sse4_1.dir/build.make CMakeFiles/arch_sse4_1.dir/depend -make -f CMakeFiles/arch_avx2.dir/build.make CMakeFiles/arch_avx2.dir/depend make[3]: Entering directory '/build/reproducible-path/diamond-aligner-2.1.11/obj-x86_64-linux-gnu' +make -f CMakeFiles/arch_sse4_1.dir/build.make CMakeFiles/arch_sse4_1.dir/depend cd /build/reproducible-path/diamond-aligner-2.1.11/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/diamond-aligner-2.1.11 /build/reproducible-path/diamond-aligner-2.1.11 /build/reproducible-path/diamond-aligner-2.1.11/obj-x86_64-linux-gnu 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/build/reproducible-path/diamond-aligner-2.1.11/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/diamond-aligner-2.1.11 /build/reproducible-path/diamond-aligner-2.1.11 /build/reproducible-path/diamond-aligner-2.1.11/obj-x86_64-linux-gnu /build/reproducible-path/diamond-aligner-2.1.11/obj-x86_64-linux-gnu /build/reproducible-path/diamond-aligner-2.1.11/obj-x86_64-linux-gnu/CMakeFiles/arch_avx2.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/diamond-aligner-2.1.11/obj-x86_64-linux-gnu' +make -f CMakeFiles/arch_avx2.dir/build.make CMakeFiles/arch_avx2.dir/build +make[3]: Leaving directory '/build/reproducible-path/diamond-aligner-2.1.11/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/diamond-aligner-2.1.11/obj-x86_64-linux-gnu' make -f CMakeFiles/arch_sse4_1.dir/build.make CMakeFiles/arch_sse4_1.dir/build -make -f CMakeFiles/arch_generic.dir/build.make 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-DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_AVX2 -DWITH_SSE4_1 -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.11/src -I/build/reproducible-path/diamond-aligner-2.1.11/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -DDISPATCH_ARCH=ARCH_GENERIC -DARCH_ID=0 -DEigen=Eigen_GENERIC -MD -MT CMakeFiles/arch_generic.dir/src/dp/score_profile.cpp.o -MF CMakeFiles/arch_generic.dir/src/dp/score_profile.cpp.o.d -o CMakeFiles/arch_generic.dir/src/dp/score_profile.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.11/src/dp/score_profile.cpp In file included from /usr/include/c++/14/list:62, from /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/swipe_wrapper.cpp:22: In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’, @@ -636,11 +672,12 @@ /usr/include/c++/14/bits/stl_algobase.h:952:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 952 | *__first = __tmp; | ~~~~~~~~~^~~~~~~ +In file included from /usr/include/c++/14/list:62, + from /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/swipe_wrapper.cpp:22: In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’, inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:998:21, inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:1029:20, - inlined from ‘DP::Swipe::ARCH_AVX2::Matrix::Matrix(int, int) [with Sv = int]’ at /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/full_matrix.h:66:12, - inlined from ‘std::__cxx11::list DP::Swipe::ARCH_AVX2::swipe(It, It, std::atomic*, Cbs, DP::TargetVec&, DP::Params&) [with Sv = int; Cbs = DP::NoCBS; It = __gnu_cxx::__normal_iterator >; Cfg = SwipeConfig, int, DummyIdMask >]’ at /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/full_swipe.h:160:9: + inlined from ‘DP::Swipe::ARCH_SSE4_1::Matrix::Matrix(int, int) [with Sv = int]’ at /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/full_matrix.h:66:12: /usr/include/c++/14/bits/stl_algobase.h:952:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 952 | *__first = __tmp; | ~~~~~~~~~^~~~~~~ @@ -648,16 +685,15 @@ inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:998:21, inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:1029:20, inlined from ‘DP::Swipe::ARCH_AVX2::Matrix::Matrix(int, int) [with Sv = int]’ at /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/full_matrix.h:66:12, - inlined from ‘std::__cxx11::list DP::Swipe::ARCH_AVX2::swipe(It, It, std::atomic*, Cbs, DP::TargetVec&, DP::Params&) [with Sv = int; Cbs = DP::NoCBS; It = __gnu_cxx::__normal_iterator >; Cfg = SwipeConfig, int, DummyIdMask >]’ at /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/full_swipe.h:160:9: + inlined from ‘std::__cxx11::list DP::Swipe::ARCH_AVX2::swipe(It, It, std::atomic*, Cbs, DP::TargetVec&, DP::Params&) [with Sv = int; Cbs = DP::NoCBS; It = __gnu_cxx::__normal_iterator >; Cfg = SwipeConfig, int, DummyIdMask >]’ at /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/full_swipe.h:160:9: /usr/include/c++/14/bits/stl_algobase.h:952:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 952 | *__first = __tmp; | ~~~~~~~~~^~~~~~~ -In file included from /usr/include/c++/14/list:62, - from /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/swipe_wrapper.cpp:22: In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’, inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:998:21, inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:1029:20, - inlined from ‘DP::Swipe::ARCH_SSE4_1::Matrix::Matrix(int, int) [with Sv = int]’ at /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/full_matrix.h:66:12: + inlined from ‘DP::Swipe::ARCH_AVX2::Matrix::Matrix(int, int) [with Sv = int]’ at /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/full_matrix.h:66:12, + inlined from ‘std::__cxx11::list DP::Swipe::ARCH_AVX2::swipe(It, It, std::atomic*, Cbs, DP::TargetVec&, DP::Params&) [with Sv = int; Cbs = DP::NoCBS; It = __gnu_cxx::__normal_iterator >; Cfg = SwipeConfig, int, DummyIdMask >]’ at /build/reproducible-path/diamond-aligner-2.1.11/src/dp/swipe/full_swipe.h:160:9: /usr/include/c++/14/bits/stl_algobase.h:952:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 952 | *__first = __tmp; | ~~~~~~~~~^~~~~~~ @@ -727,87 +763,101 @@ make[3]: Leaving directory '/build/reproducible-path/diamond-aligner-2.1.11/obj-x86_64-linux-gnu' make -f CMakeFiles/diamond.dir/build.make CMakeFiles/diamond.dir/build make[3]: Entering directory '/build/reproducible-path/diamond-aligner-2.1.11/obj-x86_64-linux-gnu' -[ 16%] Building CXX object CMakeFiles/diamond.dir/src/basic/config.cpp.o +[ 15%] Building CXX object CMakeFiles/diamond.dir/src/basic/config.cpp.o +/usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_AVX2 -DWITH_SSE4_1 -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.11/src -I/build/reproducible-path/diamond-aligner-2.1.11/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection 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-I/build/reproducible-path/diamond-aligner-2.1.11/src -I/build/reproducible-path/diamond-aligner-2.1.11/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/cluster/helpers.cpp.o -MF CMakeFiles/diamond.dir/src/cluster/helpers.cpp.o.d -o CMakeFiles/diamond.dir/src/cluster/helpers.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.11/src/cluster/helpers.cpp [ 88%] Building CXX object CMakeFiles/diamond.dir/src/cluster/cascaded/recluster.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_AVX2 -DWITH_SSE4_1 -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.11/src -I/build/reproducible-path/diamond-aligner-2.1.11/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/cluster/cascaded/recluster.cpp.o -MF CMakeFiles/diamond.dir/src/cluster/cascaded/recluster.cpp.o.d -o CMakeFiles/diamond.dir/src/cluster/cascaded/recluster.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.11/src/cluster/cascaded/recluster.cpp [ 89%] Building CXX object CMakeFiles/diamond.dir/src/search/kmer_ranking.cpp.o +[ 88%] Building CXX object CMakeFiles/diamond.dir/src/cluster/helpers.cpp.o +/usr/bin/c++ -DLEFTMOST_SEED_FILTER 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-I/build/reproducible-path/diamond-aligner-2.1.11/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/cluster/cascaded/helpers.cpp.o -MF CMakeFiles/diamond.dir/src/cluster/cascaded/helpers.cpp.o.d -o CMakeFiles/diamond.dir/src/cluster/cascaded/helpers.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.11/src/cluster/cascaded/helpers.cpp [ 95%] Building CXX object CMakeFiles/diamond.dir/src/cluster/cascaded/wrapper.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_AVX2 -DWITH_SSE4_1 -D_ITERATOR_DEBUG_LEVEL=0 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-I/build/reproducible-path/diamond-aligner-2.1.11/src -I/build/reproducible-path/diamond-aligner-2.1.11/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/output/daa/merge.cpp.o -MF CMakeFiles/diamond.dir/src/output/daa/merge.cpp.o.d -o CMakeFiles/diamond.dir/src/output/daa/merge.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.11/src/output/daa/merge.cpp [ 96%] Building CXX object CMakeFiles/diamond.dir/src/util/tsv/merge.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_AVX2 -DWITH_SSE4_1 -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.11/src -I/build/reproducible-path/diamond-aligner-2.1.11/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/util/tsv/merge.cpp.o -MF CMakeFiles/diamond.dir/src/util/tsv/merge.cpp.o.d -o CMakeFiles/diamond.dir/src/util/tsv/merge.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.11/src/util/tsv/merge.cpp [ 97%] Building CXX object CMakeFiles/diamond.dir/src/util/tsv/join.cpp.o @@ -1120,2921 +1156,2921 @@ make[1]: Leaving directory '/build/reproducible-path/diamond-aligner-2.1.11/obj-x86_64-linux-gnu' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/diamond-aligner-2.1.11' -cd debian/tests && PATH=/build/reproducible-path/diamond-aligner-2.1.11/obj-x86_64-linux-gnu:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games sh diamond-calls -+ mktemp -d -+ TESTDIR=/tmp/tmp.72ZJtdlCl4 -+ diamond blastp --threads 1 --db test/C.faa.diamond --query test/E.faa --out /tmp/tmp.72ZJtdlCl4/E.faa.vs.C.faa.diamond -e 1e-05 --outfmt 6 --sensitive +cd debian/tests && PATH=/build/reproducible-path/diamond-aligner-2.1.11/obj-x86_64-linux-gnu:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path sh diamond-calls +++ mktemp -d ++ TESTDIR=/tmp/tmp.A8efFsAV1o ++ diamond blastp --threads 1 --db test/C.faa.diamond --query test/E.faa --out /tmp/tmp.A8efFsAV1o/E.faa.vs.C.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.11.165 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) -Temporary directory: /tmp/tmp.72ZJtdlCl4 +Temporary directory: /tmp/tmp.A8efFsAV1o #Target sequences to report alignments for: 25 -Opening the database... [0s] +Opening the database... [0.011s] Database: test/C.faa.diamond (type: Diamond database, sequences: 109, letters: 51213) Block size = 2000000000 -Opening the input file... [0s] +Opening the input file... [0.01s] Opening the output file... [0s] -Loading query sequences... [0s] -Masking queries... [0.003s] +Loading query sequences... [0.001s] +Masking queries... [0.099s] Algorithm: Double-indexed -Building query histograms... [0.01s] +Building query histograms... [0.164s] Seeking in database... [0s] Loading reference sequences... [0s] -Masking reference... [0.002s] -Initializing temporary storage... [0.226s] -Building reference histograms... [0.009s] +Masking reference... [0.061s] +Initializing temporary storage... [0.004s] +Building reference histograms... [0.109s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.052s] +Building query seed array... [0.033s] +Computing hash join... [0.024s] +Masking low complexity seeds... [0.018s] +Searching alignments... [0.049s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.067s] +Building query seed array... [0.051s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.021s] +Searching alignments... [0.041s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... 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[0.027s] +Masking low complexity seeds... [0.016s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.074s] +Building query seed array... [0.045s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.032s] +Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.038s] +Building query seed array... [0.029s] +Computing hash join... [0.026s] +Masking low complexity seeds... [0.018s] +Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.065s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.044s] +Building query seed array... [0.051s] +Computing hash join... [0.026s] +Masking low complexity seeds... [0.026s] +Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.034s] +Building query seed array... [0.031s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.008s] +Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.031s] +Building query seed array... [0.046s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.01s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.047s] +Building query seed array... [0.053s] +Computing hash join... [0.028s] +Masking low complexity seeds... [0.026s] +Searching alignments... [0.032s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.019s] +Building query seed array... [0.074s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.012s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.047s] +Building query seed array... [0.031s] +Computing hash join... [0.014s] +Masking low complexity seeds... [0.024s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.038s] +Building query seed array... [0.059s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.043s] +Building query seed array... [0.037s] +Computing hash join... [0.028s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.036s] +Building query seed array... [0.048s] +Computing hash join... [0.037s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.051s] +Building query seed array... [0.051s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.024s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.051s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.032s] +Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.044s] +Building query seed array... [0.051s] +Computing hash join... [0.017s] +Masking low complexity seeds... [0.017s] +Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.039s] +Building query seed array... [0.067s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.036s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.048s] +Building query seed array... [0.037s] +Computing hash join... [0.03s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.043s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.043s] +Building query seed array... [0.043s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.031s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.047s] +Building query seed array... [0.038s] +Computing hash join... [0.021s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.025s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.037s] +Building query seed array... [0.033s] +Computing hash join... [0.033s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.033s] +Building query seed array... [0.029s] +Computing hash join... [0.058s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.04s] +Computing hash join... [0.024s] +Masking low complexity seeds... [0.01s] +Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.048s] +Computing hash join... [0.025s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.043s] +Building query seed array... [0.042s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.039s] +Building query seed array... [0.035s] +Computing hash join... [0.014s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.039s] +Building query seed array... [0.035s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.029s] +Searching alignments... [0.043s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.039s] +Building query seed array... [0.039s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.017s] +Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.058s] +Building query seed array... [0.041s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.025s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.043s] +Building query seed array... [0.044s] +Computing hash join... [0.038s] +Masking low complexity seeds... [0.04s] +Searching alignments... [0.041s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.054s] +Building query seed array... [0.037s] +Computing hash join... [0.02s] +Masking low complexity seeds... [0.018s] +Searching alignments... [0.025s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.061s] +Building query seed array... [0.051s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.038s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.055s] +Building query seed array... [0.045s] +Computing hash join... [0.024s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.041s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.047s] +Building query seed array... [0.051s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.024s] +Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.057s] +Building query seed array... [0.055s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.046s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.046s] +Building query seed array... [0.05s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.02s] +Searching alignments... [0.033s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.043s] +Building query seed array... [0.051s] +Computing hash join... [0.025s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.053s] +Building query seed array... [0.047s] +Computing hash join... [0.034s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.053s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.05s] +Building query seed array... [0.042s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.029s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.062s] +Building query seed array... [0.041s] +Computing hash join... [0.008s] +Masking low complexity seeds... [0.014s] +Searching alignments... [0.024s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.047s] +Building query seed array... [0.041s] +Computing hash join... [0.029s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.048s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.024s] +Building query seed array... [0.019s] +Computing hash join... [0.003s] +Masking low complexity seeds... [0.016s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.021s] +Building query seed array... [0.027s] +Computing hash join... [0.035s] +Masking low complexity seeds... [0.033s] +Searching alignments... [0.031s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.054s] +Building query seed array... [0.05s] +Computing hash join... [0.024s] +Masking low complexity seeds... [0.021s] +Searching alignments... [0.032s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.051s] +Building query seed array... [0.047s] +Computing hash join... [0.026s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.036s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.024s] +Building query seed array... [0.043s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.017s] +Building query seed array... [0.042s] +Computing hash join... [0.013s] +Masking low complexity seeds... [0.014s] +Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.026s] +Building query seed array... [0.053s] +Computing hash join... [0.021s] +Masking low complexity seeds... [0.022s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.043s] +Building query seed array... [0.055s] +Computing hash join... [0.008s] +Masking low complexity seeds... [0.013s] +Searching alignments... [0.036s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.051s] +Building query seed array... [0.035s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.033s] +Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.02s] +Building query seed array... [0.035s] +Computing hash join... [0.02s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.048s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.056s] +Building query seed array... [0.04s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.022s] +Searching alignments... [0.029s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.046s] +Building query seed array... [0.035s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.038s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.036s] +Building query seed array... [0.045s] +Computing hash join... [0.029s] +Masking low complexity seeds... [0.026s] +Searching alignments... [0.032s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] -Computing alignments... [0.187s] +Computing alignments... [1.948s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] -Deallocating queries... [0s] -Loading query sequences... [0s] +Deallocating queries... [0.001s] +Loading query sequences... [0.001s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] -Total time = 0.961s +Total time = 13.772s Reported 77 pairwise alignments, 77 HSPs. 72 queries aligned. -+ diamond blastp --threads 1 --db test/E.faa.diamond --query test/C.faa --out /tmp/tmp.72ZJtdlCl4/C.faa.vs.E.faa.diamond -e 1e-05 --outfmt 6 --sensitive ++ diamond blastp --threads 1 --db test/E.faa.diamond --query test/C.faa --out /tmp/tmp.A8efFsAV1o/C.faa.vs.E.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.11.165 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) -Temporary directory: /tmp/tmp.72ZJtdlCl4 +Temporary directory: /tmp/tmp.A8efFsAV1o #Target sequences to report alignments for: 25 -Opening the database... [0s] +Opening the database... [0.014s] Database: test/E.faa.diamond (type: Diamond database, sequences: 72, letters: 54509) Block size = 2000000000 -Opening the input file... [0s] +Opening the input file... [0.019s] Opening the output file... [0s] -Loading query sequences... [0s] -Masking queries... [0.003s] +Loading query sequences... [0.011s] +Masking queries... [0.089s] Algorithm: Double-indexed -Building query histograms... [0.009s] +Building query histograms... [0.156s] Seeking in database... [0s] Loading reference sequences... [0s] -Masking reference... [0.003s] -Initializing temporary storage... [0.069s] -Building reference histograms... [0.01s] +Masking reference... [0.046s] +Initializing temporary storage... [0.007s] +Building reference histograms... [0.143s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.051s] +Building query seed array... [0.051s] +Computing hash join... [0.021s] +Masking low complexity seeds... [0.006s] +Searching alignments... [0.041s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.069s] +Building query seed array... [0.067s] +Computing hash join... [0.031s] +Masking low complexity seeds... [0.035s] +Searching alignments... [0.045s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.059s] +Building query seed array... [0.048s] +Computing hash join... [0.028s] +Masking low complexity seeds... [0.026s] +Searching alignments... [0.039s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.057s] +Building query seed array... [0.083s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.069s] +Building query seed array... [0.023s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.035s] +Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.061s] +Building query seed array... [0.057s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.054s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.04s] +Building query seed array... [0.039s] +Computing hash join... [0.026s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.061s] +Building query seed array... [0.047s] +Computing hash join... [0.014s] +Masking low complexity seeds... [0.042s] +Searching alignments... [0.043s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.055s] +Computing hash join... [0.026s] +Masking low complexity seeds... [0.01s] +Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.041s] +Building query seed array... [0.054s] +Computing hash join... [0.04s] +Masking low complexity seeds... [0.009s] +Searching alignments... [0.025s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.039s] +Building query seed array... [0.039s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.018s] +Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.043s] +Building query seed array... [0.053s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.014s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] -Deallocating memory... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.022s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.01s] +Searching alignments... [0.02s] +Deallocating memory... [0.001s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.047s] +Building query seed array... [0.029s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.01s] +Searching alignments... [0.035s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.045s] +Building query seed array... [0.035s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.047s] +Building query seed array... [0.067s] +Computing hash join... [0.026s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.032s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.032s] +Building query seed array... [0.05s] +Computing hash join... [0.02s] +Masking low complexity seeds... [0.025s] +Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.062s] +Building query seed array... [0.055s] +Computing hash join... [0.014s] +Masking low complexity seeds... [0.022s] +Searching alignments... [0.024s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.043s] +Building query seed array... [0.054s] +Computing hash join... [0.02s] +Masking low complexity seeds... [0.022s] +Searching alignments... [0.031s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.046s] +Building query seed array... [0.053s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.026s] +Searching alignments... [0.033s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.046s] +Building query seed array... [0.045s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.031s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.045s] +Building query seed array... [0.043s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.037s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.046s] +Building query seed array... [0.047s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.035s] +Searching alignments... [0.035s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] -Deallocating memory... [0s] +Building reference seed array... [0.061s] +Building query seed array... [0.059s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.03s] +Deallocating memory... [0.001s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.052s] +Building query seed array... [0.047s] +Computing hash join... [0.03s] +Masking low complexity seeds... [0.022s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.027s] +Building query seed array... [0.046s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.01s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.041s] +Building query seed array... [0.057s] +Computing hash join... [0.013s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.027s] +Building query seed array... [0.041s] +Computing hash join... [0.008s] +Masking low complexity seeds... [0.028s] +Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.039s] +Computing hash join... [0.02s] +Masking low complexity seeds... [0.006s] +Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.041s] +Building query seed array... [0.035s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.035s] +Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.069s] +Building query seed array... [0.047s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.034s] +Searching alignments... [0.025s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.064s] +Building query seed array... [0.08s] +Computing hash join... [0.021s] +Masking low complexity seeds... [0.047s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.057s] +Building query seed array... [0.057s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.049s] +Building query seed array... [0.027s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.047s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.041s] +Building query seed array... [0.055s] +Computing hash join... [0.041s] +Masking low complexity seeds... [0.014s] +Searching alignments... [0.045s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.061s] +Building query seed array... [0.056s] +Computing hash join... [0.042s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.049s] +Building query seed array... [0.039s] +Computing hash join... [0.01s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.05s] +Building query seed array... [0.03s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.028s] +Building query seed array... [0.029s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.021s] +Building query seed array... [0.048s] +Computing hash join... [0.024s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.048s] +Building query seed array... [0.051s] +Computing hash join... [0.014s] +Masking low complexity seeds... [0.026s] +Searching alignments... [0.033s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.049s] +Building query seed array... [0.043s] +Computing hash join... [0.02s] +Masking low complexity seeds... [0.021s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.051s] +Building query seed array... [0.054s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.074s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.017s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.037s] +Building query seed array... [0.04s] +Computing hash join... [0.025s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.039s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.053s] +Building query seed array... [0.046s] +Computing hash join... [0.032s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.035s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.025s] +Building query seed array... [0.022s] +Computing hash join... [0.021s] +Masking low complexity seeds... [0.018s] +Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.052s] +Building query seed array... [0.044s] +Computing hash join... [0.028s] +Masking low complexity seeds... [0.018s] +Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.037s] +Building query seed array... [0.044s] +Computing hash join... [0.026s] +Masking low complexity seeds... [0.024s] +Searching alignments... [0.048s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.045s] +Building query seed array... [0.051s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.034s] +Searching alignments... [0.029s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.039s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.014s] +Searching alignments... [0.031s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.038s] +Building query seed array... [0.033s] +Computing hash join... [0.017s] +Masking low complexity seeds... [0.008s] +Searching alignments... [0.025s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.084s] +Building query seed array... [0.056s] +Computing hash join... [0.031s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.046s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.021s] +Building query seed array... [0.031s] +Computing hash join... [0.009s] +Masking low complexity seeds... [0.026s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.041s] +Building query seed array... [0.025s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.031s] +Building query seed array... [0.025s] +Computing hash join... [0.067s] +Masking low complexity seeds... [0.051s] +Searching alignments... [0.036s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.045s] +Building query seed array... [0.065s] +Computing hash join... [0.024s] +Masking low complexity seeds... [0.025s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.039s] +Building query seed array... [0.099s] +Computing hash join... [0.013s] +Masking low complexity seeds... [0.02s] +Searching alignments... [0.041s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.047s] +Building query seed array... [0.061s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.048s] +Searching alignments... [0.039s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.044s] +Building query seed array... [0.049s] +Computing hash join... [0.021s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.045s] +Building query seed array... [0.075s] +Computing hash join... [0.021s] +Masking low complexity seeds... [0.021s] +Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.073s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.017s] +Searching alignments... [0.037s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.061s] +Building query seed array... [0.04s] +Computing hash join... [0.013s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.068s] +Building query seed array... [0.082s] +Computing hash join... [0.083s] +Masking low complexity seeds... [0.016s] +Searching alignments... [0.021s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] -Computing alignments... [0.121s] +Computing alignments... [0.386s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] -Deallocating queries... [0s] +Deallocating queries... [0.006s] Loading query sequences... [0s] Closing the input file... [0s] -Closing the output file... [0s] +Closing the output file... [0.007s] Closing the database... [0s] Cleaning up... [0s] -Total time = 0.772s +Total time = 12.689s Reported 41 pairwise alignments, 41 HSPs. 15 queries aligned. -+ diamond blastp --threads 1 --db test/C.faa.diamond --query test/L.faa --out /tmp/tmp.72ZJtdlCl4/L.faa.vs.C.faa.diamond -e 1e-05 --outfmt 6 --sensitive ++ diamond blastp --threads 1 --db test/C.faa.diamond --query test/L.faa --out /tmp/tmp.A8efFsAV1o/L.faa.vs.C.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.11.165 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) -Temporary directory: /tmp/tmp.72ZJtdlCl4 +Temporary directory: /tmp/tmp.A8efFsAV1o #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/C.faa.diamond (type: Diamond database, sequences: 109, letters: 51213) Block size = 2000000000 -Opening the input file... [0s] +Opening the input file... [0.008s] Opening the output file... [0s] Loading query sequences... [0s] -Masking queries... [0.001s] +Masking queries... [0.041s] Algorithm: Double-indexed -Building query histograms... [0.005s] +Building query histograms... [0.239s] Seeking in database... [0s] -Loading reference sequences... [0s] -Masking reference... [0.003s] -Initializing temporary storage... [0s] -Building reference histograms... [0.009s] +Loading reference sequences... [0.001s] +Masking reference... [0.047s] +Initializing temporary storage... [0.01s] +Building reference histograms... [0.149s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] -Deallocating memory... [0s] +Building reference seed array... [0.055s] +Building query seed array... [0.046s] +Computing hash join... [0.033s] +Masking low complexity seeds... [0.03s] +Searching alignments... [0.051s] +Deallocating memory... [0.006s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.079s] +Building query seed array... [0.067s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.032s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.049s] +Building query seed array... [0.066s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.024s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.049s] +Building query seed array... [0.083s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.095s] +Building query seed array... [0.041s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.021s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.055s] +Building query seed array... [0.054s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.024s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.043s] +Building query seed array... [0.026s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.018s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.039s] +Building query seed array... [0.039s] +Computing hash join... [0.05s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.031s] +Building query seed array... [0.078s] +Computing hash join... [0.034s] +Masking low complexity seeds... [0.024s] +Searching alignments... [0.098s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.044s] +Building query seed array... [0.041s] +Computing hash join... [0.024s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.05s] +Building query seed array... [0.055s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.065s] +Building query seed array... [0.059s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.039s] +Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.039s] +Building query seed array... [0.04s] +Computing hash join... [0.029s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.07s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.081s] +Building query seed array... [0.055s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.038s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.059s] +Building query seed array... [0.05s] +Computing hash join... [0.031s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.052s] +Building query seed array... [0.047s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.078s] +Building query seed array... [0.074s] +Computing hash join... [0.017s] +Masking low complexity seeds... [0.018s] +Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.057s] +Building query seed array... [0.047s] +Computing hash join... [0.028s] +Masking low complexity seeds... [0.037s] +Searching alignments... [0.041s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.063s] +Building query seed array... [0.067s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.045s] +Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.059s] +Building query seed array... [0.05s] +Computing hash join... [0.046s] +Masking low complexity seeds... [0.043s] +Searching alignments... [0.042s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.029s] +Building query seed array... [0.031s] +Computing hash join... [0.055s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.046s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.052s] +Building query seed array... [0.034s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.065s] +Building query seed array... [0.048s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.06s] +Building query seed array... [0.046s] +Computing hash join... [0.034s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.024s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.055s] +Building query seed array... [0.036s] +Computing hash join... [0.03s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.064s] +Building query seed array... [0.046s] +Computing hash join... [0.021s] +Masking low complexity seeds... [0.024s] +Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.063s] +Building query seed array... [0.062s] +Computing hash join... [0.05s] +Masking low complexity seeds... [0.025s] +Searching alignments... [0.06s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.073s] +Building query seed array... [0.052s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.071s] +Building query seed array... [0.078s] +Computing hash join... [0.038s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.041s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.066s] +Building query seed array... [0.056s] +Computing hash join... [0.03s] +Masking low complexity seeds... [0.039s] +Searching alignments... [0.042s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.061s] +Building query seed array... [0.052s] +Computing hash join... [0.026s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.041s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.065s] +Building query seed array... [0.052s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.057s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.024s] +Building query seed array... [0.067s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.026s] +Building query seed array... [0.039s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.065s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.081s] +Building query seed array... [0.032s] +Computing hash join... [0.03s] +Masking low complexity seeds... [0.038s] +Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.054s] +Building query seed array... [0.034s] +Computing hash join... [0.034s] +Masking low complexity seeds... [0.043s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.094s] +Building query seed array... [0.058s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.039s] +Searching alignments... [0.049s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.072s] +Building query seed array... [0.049s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.046s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.056s] +Building query seed array... [0.042s] +Computing hash join... [0.034s] +Masking low complexity seeds... [0.033s] +Searching alignments... [0.051s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.04s] +Building query seed array... [0.086s] +Computing hash join... [0.038s] +Masking low complexity seeds... [0.016s] +Searching alignments... [0.044s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.059s] +Building query seed array... [0.039s] +Computing hash join... [0.034s] +Masking low complexity seeds... [0.039s] +Searching alignments... [0.044s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.074s] +Building query seed array... [0.036s] +Computing hash join... [0.03s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.044s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.059s] +Building query seed array... [0.024s] +Computing hash join... [0.033s] +Masking low complexity seeds... [0.032s] +Searching alignments... [0.032s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.07s] +Building query seed array... [0.053s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.016s] +Searching alignments... [0.051s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.07s] +Building query seed array... [0.079s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.044s] +Searching alignments... [0.057s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.077s] +Building query seed array... [0.052s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.043s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.068s] +Building query seed array... [0.048s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.034s] +Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.09s] +Building query seed array... [0.068s] +Computing hash join... [0.014s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.029s] +Computing hash join... [0.014s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.061s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.077s] +Building query seed array... [0.04s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.042s] +Searching alignments... [0.047s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.041s] +Building query seed array... [0.032s] +Computing hash join... [0.014s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.043s] +Building query seed array... [0.039s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.055s] +Building query seed array... [0.035s] +Computing hash join... [0.017s] +Masking low complexity seeds... [0.028s] +Searching alignments... [0.029s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.06s] +Building query seed array... [0.054s] +Computing hash join... [0.014s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.036s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.039s] +Building query seed array... [0.046s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.037s] +Building query seed array... [0.043s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.021s] +Searching alignments... [0.039s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.047s] +Building query seed array... [0.035s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.03s] +Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.058s] +Building query seed array... [0.052s] +Computing hash join... [0.026s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.048s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.045s] +Building query seed array... [0.027s] +Computing hash join... [0.024s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.036s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.037s] +Building query seed array... [0.052s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.038s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.054s] +Building query seed array... [0.035s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.039s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.058s] +Building query seed array... [0.049s] +Computing hash join... [0.024s] +Masking low complexity seeds... [0.026s] +Searching alignments... [0.054s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.049s] +Building query seed array... [0.064s] +Computing hash join... [0.034s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.041s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.029s] +Building query seed array... [0.031s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.042s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] -Computing alignments... [0.045s] +Computing alignments... [1.111s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] -Deallocating queries... [0s] +Deallocating queries... [0.007s] Loading query sequences... [0s] -Closing the input file... [0s] +Closing the input file... [0.005s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] -Total time = 0.607s +Total time = 14.991s Reported 64 pairwise alignments, 64 HSPs. 33 queries aligned. -+ diamond blastp --threads 1 --db test/L.faa.diamond --query test/C.faa --out /tmp/tmp.72ZJtdlCl4/C.faa.vs.L.faa.diamond -e 1e-05 --outfmt 6 --sensitive ++ diamond blastp --threads 1 --db test/L.faa.diamond --query test/C.faa --out /tmp/tmp.A8efFsAV1o/C.faa.vs.L.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.11.165 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) -Temporary directory: /tmp/tmp.72ZJtdlCl4 +Temporary directory: /tmp/tmp.A8efFsAV1o #Target sequences to report alignments for: 25 -Opening the database... [0s] +Opening the database... [0.03s] Database: test/L.faa.diamond (type: Diamond database, sequences: 40, letters: 26652) Block size = 2000000000 -Opening the input file... [0s] -Opening the output file... [0s] -Loading query sequences... [0s] -Masking queries... [0.003s] +Opening the input file... [0.006s] +Opening the output file... [0.003s] +Loading query sequences... [0.011s] +Masking queries... [0.043s] Algorithm: Double-indexed -Building query histograms... [0.009s] -Seeking in database... [0s] +Building query histograms... [0.156s] +Seeking in database... [0.005s] Loading reference sequences... [0s] -Masking reference... [0.001s] -Initializing temporary storage... [0s] -Building reference histograms... [0.005s] +Masking reference... [0.05s] +Initializing temporary storage... [0.001s] +Building reference histograms... [0.106s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.043s] +Building query seed array... [0.052s] +Computing hash join... [0.017s] +Masking low complexity seeds... [0.005s] +Searching alignments... [0.036s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.036s] +Building query seed array... [0.039s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.037s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.045s] +Building query seed array... [0.053s] +Computing hash join... [0.029s] +Masking low complexity seeds... [0.043s] +Searching alignments... [0.042s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.053s] +Building query seed array... [0.06s] +Computing hash join... [0.041s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.035s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.057s] +Building query seed array... [0.091s] +Computing hash join... [0.04s] +Masking low complexity seeds... [0.03s] +Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.046s] +Building query seed array... [0.07s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.043s] +Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.039s] +Computing hash join... [0.021s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.038s] +Building query seed array... [0.04s] +Computing hash join... [0.045s] +Masking low complexity seeds... [0.039s] +Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.057s] +Building query seed array... [0.04s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.05s] +Building query seed array... [0.044s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.014s] +Searching alignments... [0.031s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.046s] +Building query seed array... [0.044s] +Computing hash join... [0.025s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.047s] +Building query seed array... [0.035s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.052s] +Building query seed array... [0.047s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.054s] +Building query seed array... [0.051s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.05s] +Building query seed array... [0.059s] +Computing hash join... [0.031s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.05s] +Building query seed array... [0.059s] +Computing hash join... [0.024s] +Masking low complexity seeds... [0.026s] +Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.053s] +Building query seed array... [0.059s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.035s] +Searching alignments... [0.038s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.055s] +Building query seed array... [0.055s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.038s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.054s] +Building query seed array... [0.047s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.038s] +Building query seed array... [0.044s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.026s] +Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.058s] +Building query seed array... [0.049s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.049s] +Building query seed array... [0.043s] +Computing hash join... [0.031s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.043s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.046s] +Building query seed array... [0.045s] +Computing hash join... [0.025s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.047s] +Building query seed array... [0.051s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.043s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.052s] +Building query seed array... [0.042s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.055s] +Building query seed array... [0.039s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.026s] +Searching alignments... [0.033s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.018s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.041s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.047s] +Building query seed array... [0.027s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.056s] +Building query seed array... [0.028s] +Computing hash join... [0.009s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.047s] +Building query seed array... [0.032s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.03s] +Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.044s] +Building query seed array... [0.027s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.049s] +Building query seed array... [0.022s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.034s] +Building query seed array... [0.045s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.084s] +Building query seed array... [0.05s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.009s] +Building query seed array... [0.03s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.01s] +Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.021s] +Building query seed array... [0.056s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.042s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.046s] +Building query seed array... [0.038s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.037s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.048s] +Building query seed array... [0.046s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.042s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.034s] +Computing hash join... [0.02s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.052s] +Building query seed array... [0.052s] +Computing hash join... [0.026s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.038s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.058s] +Building query seed array... [0.052s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.018s] +Searching alignments... [0.031s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.046s] +Building query seed array... [0.045s] +Computing hash join... [0.024s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.024s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] -Deallocating memory... [0s] +Building reference seed array... [0.053s] +Building query seed array... [0.045s] +Computing hash join... [0.024s] +Masking low complexity seeds... [0.03s] +Searching alignments... [0.042s] +Deallocating memory... [0.003s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.072s] +Building query seed array... [0.062s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.036s] +Searching alignments... [0.052s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.058s] +Building query seed array... [0.065s] +Computing hash join... [0.029s] +Masking low complexity seeds... [0.036s] +Searching alignments... [0.036s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.085s] +Building query seed array... [0.048s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.034s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.065s] +Building query seed array... [0.059s] +Computing hash join... [0.041s] +Masking low complexity seeds... [0.028s] +Searching alignments... [0.038s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.074s] +Building query seed array... [0.067s] +Computing hash join... [0.017s] +Masking low complexity seeds... [0.024s] +Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.076s] +Building query seed array... [0.085s] +Computing hash join... [0.03s] +Masking low complexity seeds... [0.018s] +Searching alignments... [0.039s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.073s] +Building query seed array... [0.097s] +Computing hash join... [0.035s] +Masking low complexity seeds... [0.071s] +Searching alignments... [0.052s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.043s] +Building query seed array... [0.02s] +Computing hash join... [0.021s] +Masking low complexity seeds... [0.004s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.019s] +Building query seed array... [0.027s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.038s] +Computing hash join... [0.037s] +Masking low complexity seeds... [0.021s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.021s] +Building query seed array... [0.029s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.031s] +Building query seed array... [0.027s] +Computing hash join... [0.003s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.028s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.002s] +Searching alignments... [0.052s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.034s] +Building query seed array... [0.033s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.008s] +Searching alignments... [0.048s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] -Deallocating memory... [0s] +Building reference seed array... [0.046s] +Building query seed array... [0.057s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.032s] +Searching alignments... [0.048s] +Deallocating memory... [0.007s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.049s] +Building query seed array... [0.039s] +Computing hash join... [0.035s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.055s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.048s] +Building query seed array... [0.055s] +Computing hash join... [0.039s] +Masking low complexity seeds... [0.022s] +Searching alignments... [0.054s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.041s] +Building query seed array... [0.043s] +Computing hash join... [0.031s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.062s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.045s] +Building query seed array... [0.047s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.053s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.025s] +Building query seed array... [0.039s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.045s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] -Computing alignments... [0.087s] +Computing alignments... [2.248s] Deallocating reference... [0s] Loading reference sequences... [0s] -Deallocating buffers... [0s] +Deallocating buffers... [0.005s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] -Total time = 0.52s +Total time = 14.838s Reported 133 pairwise alignments, 133 HSPs. 109 queries aligned. -+ diamond blastp --threads 1 --db test/C.faa.diamond --query test/M.faa --out /tmp/tmp.72ZJtdlCl4/M.faa.vs.C.faa.diamond -e 1e-05 --outfmt 6 --sensitive ++ diamond blastp --threads 1 --db test/C.faa.diamond --query test/M.faa --out /tmp/tmp.A8efFsAV1o/M.faa.vs.C.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.11.165 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) -Temporary directory: /tmp/tmp.72ZJtdlCl4 +Temporary directory: /tmp/tmp.A8efFsAV1o #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/C.faa.diamond (type: Diamond database, sequences: 109, letters: 51213) Block size = 2000000000 -Opening the input file... [0s] +Opening the input file... [0.011s] Opening the output file... [0s] Loading query sequences... [0s] -Masking queries... [0.001s] +Masking queries... [0.096s] Algorithm: Double-indexed -Building query histograms... [0.005s] +Building query histograms... [0.045s] Seeking in database... [0s] Loading reference sequences... [0s] -Masking reference... [0.002s] -Initializing temporary storage... [0s] -Building reference histograms... [0.009s] +Masking reference... [0.013s] +Initializing temporary storage... [0.002s] +Building reference histograms... [0.097s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.102s] +Building query seed array... [0.048s] +Computing hash join... [0.014s] +Masking low complexity seeds... [0.02s] +Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.076s] +Building query seed array... [0.096s] +Computing hash join... [0.056s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.036s] +Building query seed array... [0.071s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.006s] +Searching alignments... [0.051s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.077s] +Building query seed array... [0.079s] +Computing hash join... [0.029s] +Masking low complexity seeds... [0.017s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.053s] +Building query seed array... [0.051s] +Computing hash join... [0.009s] +Masking low complexity seeds... [0.009s] +Searching alignments... [0.042s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.051s] +Building query seed array... [0.031s] +Computing hash join... [0.035s] +Masking low complexity seeds... [0.034s] +Searching alignments... [0.054s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.085s] +Building query seed array... [0.027s] +Computing hash join... [0.024s] +Masking low complexity seeds... [0.01s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.025s] +Building query seed array... [0.045s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.029s] +Searching alignments... [0.024s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.03s] +Computing hash join... [0.024s] +Masking low complexity seeds... [0.005s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.032s] +Building query seed array... [0.025s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.02s] +Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.029s] +Building query seed array... [0.028s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.041s] +Building query seed array... [0.039s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.016s] +Searching alignments... [0.035s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.043s] +Building query seed array... [0.05s] +Computing hash join... [0.02s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.039s] +Building query seed array... [0.028s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.039s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.049s] +Building query seed array... [0.048s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.037s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.055s] +Building query seed array... [0.048s] +Computing hash join... [0.026s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.039s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.047s] +Building query seed array... [0.045s] +Computing hash join... [0.024s] +Masking low complexity seeds... [0.014s] +Searching alignments... [0.036s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.043s] +Computing hash join... [0.026s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.031s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.047s] +Building query seed array... [0.05s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.047s] +Building query seed array... [0.032s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.048s] +Building query seed array... [0.05s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.058s] +Building query seed array... [0.05s] +Computing hash join... [0.03s] +Masking low complexity seeds... [0.028s] +Searching alignments... [0.042s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.057s] +Building query seed array... [0.054s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.014s] +Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.039s] +Computing hash join... [0.02s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.039s] +Building query seed array... [0.042s] +Computing hash join... [0.028s] +Masking low complexity seeds... [0.022s] +Searching alignments... [0.031s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.036s] +Building query seed array... [0.055s] +Computing hash join... [0.026s] +Masking low complexity seeds... [0.003s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.023s] +Building query seed array... [0.037s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.014s] +Searching alignments... [0.038s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.056s] +Building query seed array... [0.054s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.036s] +Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.03s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.036s] +Building query seed array... [0.022s] +Computing hash join... [0.013s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.043s] +Building query seed array... [0.026s] +Computing hash join... [0.017s] +Masking low complexity seeds... [0.018s] +Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.026s] +Computing hash join... [0.024s] +Masking low complexity seeds... [0.014s] +Searching alignments... [0.041s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.027s] +Building query seed array... [0.023s] +Computing hash join... [0.008s] +Masking low complexity seeds... [0.017s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.038s] +Building query seed array... [0.082s] +Computing hash join... [0.01s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.04s] +Building query seed array... [0.038s] +Computing hash join... [0.008s] +Masking low complexity seeds... [0.013s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.019s] +Building query seed array... [0.015s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.037s] +Building query seed array... [0.043s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.008s] +Searching alignments... [0.025s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.027s] +Building query seed array... [0.035s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.041s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.015s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.033s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.025s] +Building query seed array... [0.027s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.021s] +Building query seed array... [0.02s] +Computing hash join... [0.017s] +Masking low complexity seeds... [0.008s] +Searching alignments... [0.029s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.025s] +Building query seed array... [0.098s] +Computing hash join... [0.008s] +Masking low complexity seeds... [0.01s] +Searching alignments... [0.024s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.048s] +Building query seed array... [0.023s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.066s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.032s] +Building query seed array... [0.027s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.036s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.121s] +Building query seed array... [0.06s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.044s] +Searching alignments... [0.131s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.021s] +Building query seed array... [0.019s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.025s] +Building query seed array... [0.031s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.036s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.109s] +Building query seed array... [0.039s] +Computing hash join... [0.009s] +Masking low complexity seeds... [0.017s] +Searching alignments... [0.06s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] -Deallocating memory... [0s] +Building reference seed array... [0.025s] +Building query seed array... [0.023s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.016s] +Deallocating memory... [0.006s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.026s] +Building query seed array... [0.05s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.075s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.049s] +Building query seed array... [0.051s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.072s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.065s] +Building query seed array... [0.103s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.056s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.025s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.031s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.027s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.063s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.035s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.057s] +Building query seed array... [0.027s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.039s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.069s] +Building query seed array... [0.055s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.027s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.031s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.033s] +Building query seed array... [0.027s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.047s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.077s] +Building query seed array... [0.04s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.055s] +Searching alignments... [0.051s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.065s] +Building query seed array... [0.028s] +Computing hash join... [0.01s] +Masking low complexity seeds... [0.024s] +Searching alignments... [0.062s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.025s] +Building query seed array... [0.101s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.081s] +Searching alignments... [0.039s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.049s] +Building query seed array... [0.031s] +Computing hash join... [0.043s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.033s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.089s] +Building query seed array... [0.023s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.119s] +Searching alignments... [0.019s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] -Computing alignments... [0.055s] +Computing alignments... [1.454s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] -Deallocating queries... [0s] +Deallocating queries... [0.005s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] -Total time = 0.499s +Total time = 12.862s Reported 62 pairwise alignments, 62 HSPs. 33 queries aligned. -+ diamond blastp --threads 1 --db test/M.faa.diamond --query test/C.faa --out /tmp/tmp.72ZJtdlCl4/C.faa.vs.M.faa.diamond -e 1e-05 --outfmt 6 --sensitive ++ diamond blastp --threads 1 --db test/M.faa.diamond --query test/C.faa --out /tmp/tmp.A8efFsAV1o/C.faa.vs.M.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.11.165 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) -Temporary directory: /tmp/tmp.72ZJtdlCl4 +Temporary directory: /tmp/tmp.A8efFsAV1o #Target sequences to report alignments for: 25 -Opening the database... [0s] +Opening the database... [0.008s] Database: test/M.faa.diamond (type: Diamond database, sequences: 40, letters: 26963) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] -Loading query sequences... [0s] -Masking queries... [0.003s] +Loading query sequences... [0.007s] +Masking queries... [0.042s] Algorithm: Double-indexed -Building query histograms... [0.009s] +Building query histograms... [0.056s] Seeking in database... [0s] Loading reference sequences... [0s] -Masking reference... [0.001s] -Initializing temporary storage... [0s] -Building reference histograms... [0.005s] +Masking reference... [0.022s] +Initializing temporary storage... [0.002s] +Building reference histograms... [0.11s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.039s] +Building query seed array... [0.039s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.016s] +Searching alignments... [0.024s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.039s] +Building query seed array... [0.045s] +Computing hash join... [0.017s] +Masking low complexity seeds... [0.006s] +Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.046s] +Computing hash join... [0.009s] +Masking low complexity seeds... [0.013s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.029s] +Building query seed array... [0.036s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.009s] +Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.027s] +Building query seed array... [0.032s] +Computing hash join... [0.014s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.036s] +Building query seed array... [0.03s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.024s] +Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.04s] +Building query seed array... [0.029s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.016s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.025s] +Building query seed array... [0.028s] +Computing hash join... [0.014s] +Masking low complexity seeds... [0.012s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.025s] +Building query seed array... [0.023s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.023s] +Building query seed array... [0.031s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.003s] +Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.027s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.019s] +Building query seed array... [0.017s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.012s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.027s] +Building query seed array... [0.021s] +Computing hash join... [0.014s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.027s] +Computing hash join... [0.031s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.038s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.051s] +Building query seed array... [0.055s] +Computing hash join... [0.031s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.047s] +Building query seed array... [0.043s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.046s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.058s] +Building query seed array... [0.039s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.026s] +Searching alignments... [0.036s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.05s] +Building query seed array... [0.042s] +Computing hash join... [0.02s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.025s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.056s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.03s] +Searching alignments... [0.039s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.071s] +Building query seed array... [0.059s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.003s] +Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.033s] +Building query seed array... [0.053s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.025s] +Building query seed array... [0.06s] +Computing hash join... [0.024s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.049s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.005s] +Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.025s] +Building query seed array... [0.035s] +Computing hash join... [0.013s] +Masking low complexity seeds... [0.03s] +Searching alignments... [0.042s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.036s] +Building query seed array... [0.051s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.039s] +Searching alignments... [0.042s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.047s] +Building query seed array... [0.057s] +Computing hash join... [0.013s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.023s] +Building query seed array... [0.039s] +Computing hash join... [0.008s] +Masking low complexity seeds... [0.01s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.032s] +Building query seed array... [0.026s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.003s] +Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.028s] +Building query seed array... [0.027s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.046s] +Building query seed array... [0.042s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.018s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.028s] +Building query seed array... [0.037s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.035s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.041s] +Building query seed array... [0.039s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.035s] +Searching alignments... [0.041s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.05s] +Building query seed array... [0.055s] +Computing hash join... [0.02s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.033s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.023s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.035s] +Searching alignments... [0.029s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.027s] +Building query seed array... [0.027s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.008s] +Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.027s] +Building query seed array... [0.019s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] -Deallocating memory... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.043s] +Computing hash join... [0.05s] +Masking low complexity seeds... [0.003s] +Searching alignments... [0.021s] +Deallocating memory... [0.003s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.023s] +Building query seed array... [0.023s] +Computing hash join... [0.004s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.027s] +Building query seed array... [0.023s] +Computing hash join... [0.032s] +Masking low complexity seeds... [0.018s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.046s] +Computing hash join... [0.013s] +Masking low complexity seeds... [0.004s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.049s] +Building query seed array... [0.042s] +Computing hash join... [0.013s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.016s] +Building query seed array... [0.034s] +Computing hash join... [0.024s] +Masking low complexity seeds... [0.01s] +Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.025s] +Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.031s] +Building query seed array... [0.033s] +Computing hash join... [0.009s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.032s] +Building query seed array... [0.05s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.014s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.025s] +Building query seed array... [0.034s] +Computing hash join... [0.037s] +Masking low complexity seeds... [0.009s] +Searching alignments... [0.033s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.025s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.009s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.052s] +Building query seed array... [0.031s] +Computing hash join... [0.009s] +Masking low complexity seeds... [0.012s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.025s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.028s] +Building query seed array... [0.032s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.043s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.048s] +Building query seed array... [0.025s] +Computing hash join... [0.025s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.044s] +Computing hash join... [0.017s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.029s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.044s] +Computing hash join... [0.026s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.041s] +Building query seed array... [0.047s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.029s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.046s] +Building query seed array... [0.038s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.024s] +Searching alignments... [0.051s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.061s] +Building query seed array... [0.015s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.014s] +Searching alignments... [0.035s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.05s] +Building query seed array... [0.038s] +Computing hash join... [0.008s] +Masking low complexity seeds... [0.01s] +Searching alignments... [0.041s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.06s] +Building query seed array... [0.026s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.006s] +Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.071s] +Building query seed array... [0.037s] +Computing hash join... [0.021s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.051s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.041s] +Building query seed array... [0.051s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.035s] +Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.049s] +Building query seed array... [0.049s] +Computing hash join... [0.031s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.021s] +Building query seed array... [0.032s] +Computing hash join... [0.024s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.025s] +Building query seed array... [0.026s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.028s] +Building query seed array... [0.091s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.01s] +Searching alignments... [0.02s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] -Computing alignments... [0.101s] +Computing alignments... [1.489s] Deallocating reference... [0s] -Loading reference sequences... [0s] +Loading reference sequences... [0.009s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] @@ -4042,3408 +4078,3408 @@ Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] -Total time = 0.545s +Total time = 11.206s Reported 131 pairwise alignments, 131 HSPs. 109 queries aligned. -+ diamond blastp --ignore-warnings --threads 1 --db test/C.faa.diamond --query test/C2.faa --out /tmp/tmp.72ZJtdlCl4/C2.faa.vs.C.faa.diamond -e 1e-05 --outfmt 6 --sensitive ++ diamond blastp --ignore-warnings --threads 1 --db test/C.faa.diamond --query test/C2.faa --out /tmp/tmp.A8efFsAV1o/C2.faa.vs.C.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.11.165 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) -Temporary directory: /tmp/tmp.72ZJtdlCl4 +Temporary directory: /tmp/tmp.A8efFsAV1o #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/C.faa.diamond (type: Diamond database, sequences: 109, letters: 51213) Block size = 2000000000 -Opening the input file... [0s] +Opening the input file... [0.001s] Opening the output file... [0s] Loading query sequences... [0s] -Masking queries... [0s] +Masking queries... [0.057s] Algorithm: Double-indexed -Building query histograms... [0s] +Building query histograms... [0.036s] Seeking in database... [0s] Loading reference sequences... [0s] -Masking reference... [0.003s] -Initializing temporary storage... [0.054s] -Building reference histograms... [0.009s] +Masking reference... [0.079s] +Initializing temporary storage... [0.015s] +Building reference histograms... [0.076s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.047s] +Building query seed array... [0.033s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.021s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.052s] +Building query seed array... [0.026s] +Computing hash join... [0.034s] +Masking low complexity seeds... [0.035s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.025s] +Building query seed array... [0.034s] +Computing hash join... [0.02s] +Masking low complexity seeds... [0.022s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.053s] +Building query seed array... [0.018s] +Computing hash join... [0.017s] +Masking low complexity seeds... [0.022s] +Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.058s] +Building query seed array... [0.03s] +Computing hash join... [0.02s] +Masking low complexity seeds... [0.018s] +Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.047s] +Building query seed array... [0.041s] +Computing hash join... [0.032s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.043s] +Building query seed array... [0.027s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.029s] +Building query seed array... [0.037s] +Computing hash join... [0.009s] +Masking low complexity seeds... [0.026s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.032s] +Building query seed array... [0.035s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.023s] +Building query seed array... [0.023s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.038s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.02s] +Building query seed array... [0.028s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.018s] +Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.039s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.028s] +Building query seed array... [0.031s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.024s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.036s] +Building query seed array... [0.035s] +Computing hash join... [0.024s] +Masking low complexity seeds... [0.018s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.038s] +Building query seed array... [0.023s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.036s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.032s] +Building query seed array... [0.053s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.02s] +Searching alignments... [0.04s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.041s] +Building query seed array... [0.039s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.039s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.043s] +Building query seed array... [0.037s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.031s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.053s] +Building query seed array... [0.043s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.026s] +Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.052s] +Building query seed array... [0.043s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.016s] +Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.034s] +Building query seed array... [0.029s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.025s] +Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.022s] +Building query seed array... [0.028s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.012s] +Searching alignments... [0.033s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.047s] +Building query seed array... [0.039s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.064s] +Building query seed array... [0.043s] +Computing hash join... [0.024s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.043s] +Building query seed array... [0.031s] +Computing hash join... [0.024s] +Masking low complexity seeds... [0.017s] +Searching alignments... [0.025s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] -Deallocating memory... [0s] +Building reference seed array... [0.05s] +Building query seed array... [0.035s] +Computing hash join... [0.017s] +Masking low complexity seeds... [0.012s] +Searching alignments... [0.009s] +Deallocating memory... [0.009s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.047s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.043s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.025s] +Building query seed array... [0.043s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.038s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] -Deallocating memory... [0s] +Building reference seed array... [0.027s] +Building query seed array... [0.023s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.037s] +Deallocating memory... [0.003s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.018s] +Building query seed array... [0.031s] +Computing hash join... [0.014s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.029s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.035s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.022s] +Searching alignments... [0.029s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] -Deallocating memory... [0s] +Building reference seed array... [0.027s] +Building query seed array... [0.023s] +Computing hash join... [0.014s] +Masking low complexity seeds... [0.013s] +Searching alignments... [0.027s] +Deallocating memory... [0.005s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.023s] +Building query seed array... [0.023s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.045s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] -Deallocating memory... [0s] +Building reference seed array... [0.109s] +Building query seed array... [0.027s] +Computing hash join... [0.006s] +Masking low complexity seeds... [0.009s] +Searching alignments... [0.049s] +Deallocating memory... [0.001s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.027s] +Building query seed array... [0.023s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.036s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.053s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.036s] +Building query seed array... [0.027s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.037s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.026s] +Building query seed array... [0.06s] +Computing hash join... [0.01s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.044s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.036s] +Building query seed array... [0.047s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.037s] +Building query seed array... [0.029s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.035s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.033s] +Building query seed array... [0.021s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.046s] +Building query seed array... [0.011s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.04s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.027s] +Building query seed array... [0.023s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.043s] +Building query seed array... [0.044s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.005s] +Searching alignments... [0.042s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.032s] +Building query seed array... [0.031s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.036s] +Building query seed array... [0.023s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.005s] +Searching alignments... [0.058s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.023s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.041s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] -Deallocating memory... [0s] +Building reference seed array... [0.036s] +Building query seed array... [0.027s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.012s] +Deallocating memory... [0.005s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.028s] +Building query seed array... [0.019s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.043s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.032s] +Building query seed array... [0.03s] +Computing hash join... [0.013s] +Masking low complexity seeds... [0.009s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.023s] +Building query seed array... [0.043s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.036s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.019s] +Building query seed array... [0.011s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.052s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.023s] +Building query seed array... [0.039s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.039s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.039s] +Building query seed array... [0.031s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.022s] +Computing hash join... [0.038s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.035s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.069s] +Building query seed array... [0.047s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.066s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.041s] +Building query seed array... [0.023s] +Computing hash join... [0.043s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.038s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.029s] +Building query seed array... [0.067s] +Computing hash join... [0.028s] +Masking low complexity seeds... [0.013s] +Searching alignments... [0.046s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.063s] +Building query seed array... [0.025s] +Computing hash join... [0.009s] +Masking low complexity seeds... [0.03s] +Searching alignments... [0.029s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.061s] +Building query seed array... [0.043s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.027s] +Building query seed array... [0.053s] +Computing hash join... [0.031s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.042s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.089s] +Building query seed array... [0.055s] +Computing hash join... [0.02s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.057s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.078s] +Building query seed array... [0.044s] +Computing hash join... [0.034s] +Masking low complexity seeds... [0.043s] +Searching alignments... [0.042s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.077s] +Building query seed array... [0.051s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.021s] +Searching alignments... [0.008s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] -Computing alignments... [0.092s] +Computing alignments... [0.074s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] -Closing the output file... [0s] +Closing the output file... [0.011s] Closing the database... [0s] Cleaning up... [0s] -Total time = 0.582s +Total time = 10.741s Reported 1 pairwise alignments, 1 HSPs. 1 queries aligned. -+ diamond blastp --threads 1 --db test/C2.faa.diamond --query test/C.faa --out /tmp/tmp.72ZJtdlCl4/C.faa.vs.C2.faa.diamond -e 1e-05 --outfmt 6 --sensitive ++ diamond blastp --threads 1 --db test/C2.faa.diamond --query test/C.faa --out /tmp/tmp.A8efFsAV1o/C.faa.vs.C2.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.11.165 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) -Temporary directory: /tmp/tmp.72ZJtdlCl4 +Temporary directory: /tmp/tmp.A8efFsAV1o #Target sequences to report alignments for: 25 -Opening the database... [0s] +Opening the database... [0.011s] Database: test/C2.faa.diamond (type: Diamond database, sequences: 2, letters: 726) Block size = 2000000000 Opening the input file... [0s] -Opening the output file... [0s] -Loading query sequences... [0s] -Masking queries... [0.003s] +Opening the output file... [0.007s] +Loading query sequences... [0.001s] +Masking queries... [0.058s] Algorithm: Double-indexed -Building query histograms... [0.009s] +Building query histograms... [0.124s] Seeking in database... [0s] Loading reference sequences... [0s] -Masking reference... [0s] -Initializing temporary storage... [0.158s] -Building reference histograms... [0s] +Masking reference... [0.011s] +Initializing temporary storage... [0.018s] +Building reference histograms... [0.024s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.027s] +Building query seed array... [0.049s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.023s] +Building query seed array... [0.063s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.012s] +Searching alignments... [0.029s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.044s] +Building query seed array... [0.03s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.054s] +Building query seed array... [0.033s] +Computing hash join... [0.013s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.024s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.034s] +Building query seed array... [0.046s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.024s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.045s] +Building query seed array... [0.049s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.024s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.037s] +Building query seed array... [0.067s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.024s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.05s] +Building query seed array... [0.061s] +Computing hash join... [0.02s] +Masking low complexity seeds... [0.026s] +Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.053s] +Building query seed array... [0.044s] +Computing hash join... [0.02s] +Masking low complexity seeds... [0.017s] +Searching alignments... [0.032s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.04s] +Building query seed array... [0.041s] +Computing hash join... [0.034s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.041s] +Building query seed array... [0.039s] +Computing hash join... [0.02s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.037s] +Building query seed array... [0.049s] +Computing hash join... [0.029s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.038s] +Building query seed array... [0.053s] +Computing hash join... [0.033s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.039s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.041s] +Building query seed array... [0.042s] +Computing hash join... [0.025s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.032s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.057s] +Building query seed array... [0.037s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.03s] +Searching alignments... [0.035s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.062s] +Building query seed array... [0.044s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.035s] +Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.054s] +Building query seed array... [0.06s] +Computing hash join... [0.026s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.031s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.058s] +Building query seed array... [0.049s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.009s] +Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.039s] +Building query seed array... [0.019s] +Computing hash join... [0.024s] +Masking low complexity seeds... [0.01s] +Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.026s] +Building query seed array... [0.06s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.029s] +Searching alignments... [0.037s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.107s] +Building query seed array... [0.05s] +Computing hash join... [0.014s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.024s] +Building query seed array... [0.033s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.009s] +Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.013s] +Building query seed array... [0.031s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.024s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.029s] +Building query seed array... [0.014s] +Computing hash join... [0.013s] +Masking low complexity seeds... [0.042s] +Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.017s] +Building query seed array... [0.027s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.021s] +Building query seed array... [0.04s] +Computing hash join... [0.026s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.015s] +Building query seed array... [0.029s] +Computing hash join... [0.006s] +Masking low complexity seeds... [0.008s] +Searching alignments... [0.037s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.027s] +Building query seed array... [0.034s] +Computing hash join... [0.013s] +Masking low complexity seeds... [0.009s] +Searching alignments... [0.031s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.027s] +Building query seed array... [0.045s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.028s] +Building query seed array... [0.018s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.026s] +Searching alignments... [0.035s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.039s] +Building query seed array... [0.035s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.057s] +Building query seed array... [0.037s] +Computing hash join... [0.009s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.045s] +Building query seed array... [0.035s] +Computing hash join... [0.035s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.029s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] -Deallocating memory... [0s] +Building reference seed array... [0.033s] +Building query seed array... [0.039s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.022s] +Searching alignments... [0.01s] +Deallocating memory... [0.003s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.019s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] -Deallocating memory... [0s] +Building reference seed array... [0.063s] +Building query seed array... [0.055s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.019s] +Deallocating memory... [0.006s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.011s] +Building query seed array... [0.022s] +Computing hash join... [0.02s] +Masking low complexity seeds... [0.035s] +Searching alignments... [0.033s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.051s] +Building query seed array... [0.043s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.041s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.039s] +Building query seed array... [0.023s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.044s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.024s] +Building query seed array... [0.035s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.003s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.013s] +Building query seed array... [0.025s] +Computing hash join... [0.009s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.024s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] +Building reference seed array... [0.019s] +Building query seed array... [0.017s] Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Masking low complexity seeds... [0.018s] +Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] +Building reference seed array... [0.012s] +Building query seed array... [0.015s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0s] +Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.047s] +Building query seed array... [0.023s] +Computing hash join... [0.017s] +Masking low complexity seeds... [0.006s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.033s] +Building query seed array... [0.049s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.028s] +Searching alignments... [0.041s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building query seed array... [0.037s] +Computing hash join... [0.037s] +Masking low complexity seeds... [0.009s] +Searching alignments... [0.024s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.019s] +Building query seed array... [0.037s] +Computing hash join... [0.006s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.039s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.012s] +Building query seed array... [0.015s] +Computing hash join... [0.028s] +Masking low complexity seeds... [0.062s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.065s] +Building query seed array... [0.064s] +Computing hash join... [0.051s] +Masking low complexity seeds... [0.049s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.037s] +Building query seed array... [0.047s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.055s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.065s] +Building query seed array... [0.084s] +Computing hash join... [0.033s] +Masking low complexity seeds... [0.017s] +Searching alignments... [0.025s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.098s] +Building query seed array... [0.055s] +Computing hash join... [0.031s] +Masking low complexity seeds... [0.035s] +Searching alignments... [0.038s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.12s] +Building query seed array... [0.084s] +Computing hash join... [0.047s] +Masking low complexity seeds... [0.069s] +Searching alignments... [0.055s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] -Deallocating memory... [0s] +Building reference seed array... [0.017s] +Building query seed array... [0.031s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.014s] +Searching alignments... [0.019s] +Deallocating memory... [0.008s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.018s] +Building query seed array... [0.039s] +Computing hash join... [0.035s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.059s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.064s] +Building query seed array... [0.057s] +Computing hash join... [0.021s] +Masking low complexity seeds... [0.024s] +Searching alignments... [0.055s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.081s] +Building query seed array... [0.031s] +Computing hash join... [0.026s] +Masking low complexity seeds... [0.039s] +Searching alignments... [0.05s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.034s] +Building query seed array... [0.042s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.051s] +Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.046s] +Building query seed array... [0.043s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.035s] +Searching alignments... [0.051s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.052s] +Building query seed array... [0.031s] +Computing hash join... [0.039s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.05s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.037s] +Building query seed array... [0.039s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.042s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.052s] +Building query seed array... [0.044s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.035s] +Searching alignments... [0.054s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.046s] +Building query seed array... [0.058s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.03s] +Searching alignments... [0.057s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.039s] +Building query seed array... [0.035s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.018s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] -Computing alignments... [0.041s] +Computing alignments... [0.059s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] -Closing the output file... [0s] +Closing the output file... [0.009s] Closing the database... [0s] Cleaning up... [0s] -Total time = 0.704s +Total time = 11.131s Reported 1 pairwise alignments, 1 HSPs. 1 queries aligned. -+ diamond blastp --threads 1 --db test/E.faa.diamond --query test/L.faa --out /tmp/tmp.72ZJtdlCl4/L.faa.vs.E.faa.diamond -e 1e-05 --outfmt 6 --sensitive ++ diamond blastp --threads 1 --db test/E.faa.diamond --query test/L.faa --out /tmp/tmp.A8efFsAV1o/L.faa.vs.E.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.11.165 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) -Temporary directory: /tmp/tmp.72ZJtdlCl4 +Temporary directory: /tmp/tmp.A8efFsAV1o #Target sequences to report alignments for: 25 -Opening the database... [0s] +Opening the database... [0.006s] Database: test/E.faa.diamond (type: Diamond database, sequences: 72, letters: 54509) Block size = 2000000000 Opening the input file... [0s] -Opening the output file... [0s] -Loading query sequences... [0s] -Masking queries... [0.001s] +Opening the output file... [0.003s] +Loading query sequences... [0.006s] +Masking queries... [0.035s] Algorithm: Double-indexed -Building query histograms... [0.005s] +Building query histograms... [0.074s] Seeking in database... [0s] -Loading reference sequences... [0s] -Masking reference... [0.003s] -Initializing temporary storage... [0.233s] -Building reference histograms... [0.01s] +Loading reference sequences... [0.001s] +Masking reference... [0.046s] +Initializing temporary storage... [0.011s] +Building reference histograms... [0.275s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.069s] +Building query seed array... [0.042s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.033s] +Searching alignments... [0.074s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.049s] +Building query seed array... [0.063s] +Computing hash join... [0.034s] +Masking low complexity seeds... [0.022s] +Searching alignments... [0.131s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.062s] +Building query seed array... [0.058s] +Computing hash join... [0.074s] +Masking low complexity seeds... [0.034s] +Searching alignments... [0.038s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.079s] +Building query seed array... [0.07s] +Computing hash join... [0.035s] +Masking low complexity seeds... [0.035s] +Searching alignments... [0.033s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.07s] +Building query seed array... [0.112s] +Computing hash join... [0.065s] +Masking low complexity seeds... [0.026s] +Searching alignments... [0.029s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.112s] +Building query seed array... [0.06s] +Computing hash join... [0.054s] +Masking low complexity seeds... [0.028s] +Searching alignments... [0.051s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.084s] +Building query seed array... [0.03s] +Computing hash join... [0.005s] +Masking low complexity seeds... [0.004s] +Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.057s] +Building query seed array... [0.043s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.033s] +Searching alignments... [0.039s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.046s] +Building query seed array... [0.059s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.038s] +Searching alignments... [0.025s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.05s] +Building query seed array... [0.027s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.022s] +Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.06s] +Building query seed array... [0.147s] +Computing hash join... [0.024s] +Masking low complexity seeds... [0.037s] +Searching alignments... [0.041s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.065s] +Building query seed array... [0.089s] +Computing hash join... [0.025s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.029s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.038s] +Building query seed array... [0.003s] +Computing hash join... [0.02s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.037s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.057s] +Building query seed array... [0.08s] +Computing hash join... [0.03s] +Masking low complexity seeds... [0.047s] +Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.031s] +Building query seed array... [0.039s] +Computing hash join... [0.031s] +Masking low complexity seeds... [0.034s] +Searching alignments... [0.042s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.055s] +Building query seed array... [0.026s] +Computing hash join... [0.026s] +Masking low complexity seeds... [0.03s] +Searching alignments... [0.038s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.07s] +Building query seed array... [0.06s] +Computing hash join... [0.017s] +Masking low complexity seeds... [0.02s] +Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.066s] +Building query seed array... [0.033s] +Computing hash join... [0.026s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.075s] +Building query seed array... [0.055s] +Computing hash join... [0.017s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.025s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.022s] +Building query seed array... [0.075s] +Computing hash join... [0.02s] +Masking low complexity seeds... [0.028s] +Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.067s] +Building query seed array... [0.024s] +Computing hash join... [0.03s] +Masking low complexity seeds... [0.002s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.022s] +Building query seed array... [0.034s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.01s] +Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.029s] +Building query seed array... [0.08s] +Computing hash join... [0.035s] +Masking low complexity seeds... [0.054s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.048s] +Computing hash join... [0.076s] +Masking low complexity seeds... [0.037s] +Searching alignments... [0.029s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.039s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.043s] +Building query seed array... [0.051s] +Computing hash join... [0.006s] +Masking low complexity seeds... [0.016s] +Searching alignments... [0.042s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.051s] +Building query seed array... [0.035s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.029s] +Searching alignments... [0.048s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.051s] +Building query seed array... [0.059s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.047s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.065s] +Building query seed array... [0.039s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.051s] +Building query seed array... [0.055s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.042s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.067s] +Building query seed array... [0.055s] +Computing hash join... [0.035s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.023s] +Building query seed array... [0.011s] +Computing hash join... [0.031s] +Masking low complexity seeds... [0.003s] +Searching alignments... [0.046s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.071s] +Building query seed array... [0.051s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.049s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.046s] +Building query seed array... [0.043s] +Computing hash join... [0.028s] +Masking low complexity seeds... [0.022s] +Searching alignments... [0.033s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.051s] +Building query seed array... [0.055s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.039s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.055s] +Building query seed array... [0.029s] +Computing hash join... [0.025s] +Masking low complexity seeds... [0.018s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.028s] +Building query seed array... [0.037s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.048s] +Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.052s] +Building query seed array... [0.047s] +Computing hash join... [0.042s] +Masking low complexity seeds... [0.013s] +Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.083s] +Building query seed array... [0.045s] +Computing hash join... [0.026s] +Masking low complexity seeds... [0.025s] +Searching alignments... [0.045s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.091s] +Building query seed array... [0.034s] +Computing hash join... [0.034s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.029s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.096s] +Building query seed array... [0.05s] +Computing hash join... [0.061s] +Masking low complexity seeds... [0.036s] +Searching alignments... [0.056s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.078s] +Building query seed array... [0.078s] +Computing hash join... [0.043s] +Masking low complexity seeds... [0.044s] +Searching alignments... [0.048s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.109s] +Building query seed array... [0.087s] +Computing hash join... [0.042s] +Masking low complexity seeds... [0.041s] +Searching alignments... [0.064s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.079s] +Building query seed array... [0.066s] +Computing hash join... [0.029s] +Masking low complexity seeds... [0.056s] +Searching alignments... [0.058s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.047s] +Building query seed array... [0.079s] +Computing hash join... [0.021s] +Masking low complexity seeds... [0.034s] +Searching alignments... [0.056s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.074s] +Building query seed array... [0.031s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.038s] +Searching alignments... [0.06s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.085s] +Building query seed array... [0.067s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.039s] +Searching alignments... [0.044s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.051s] +Building query seed array... [0.081s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.05s] +Building query seed array... [0.038s] +Computing hash join... [0.021s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.029s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.047s] +Building query seed array... [0.07s] +Computing hash join... [0.02s] +Masking low complexity seeds... [0.02s] +Searching alignments... [0.054s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.048s] +Building query seed array... [0.033s] +Computing hash join... [0.026s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.033s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.043s] +Building query seed array... [0.061s] +Computing hash join... [0.025s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.051s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.041s] +Building query seed array... [0.038s] +Computing hash join... [0.031s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.054s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.061s] +Building query seed array... [0.062s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.032s] +Searching alignments... [0.063s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.056s] +Building query seed array... [0.053s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.056s] +Building query seed array... [0.065s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.01s] +Searching alignments... [0.025s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.05s] +Building query seed array... [0.048s] +Computing hash join... [0.025s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.044s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.051s] +Building query seed array... [0.049s] +Computing hash join... [0.024s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.036s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.046s] +Building query seed array... [0.042s] +Computing hash join... [0.024s] +Masking low complexity seeds... [0.03s] +Searching alignments... [0.044s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.05s] +Building query seed array... [0.052s] +Computing hash join... [0.006s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.039s] +Building query seed array... [0.077s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.035s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.059s] +Building query seed array... [0.031s] +Computing hash join... [0.024s] +Masking low complexity seeds... [0.016s] +Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.044s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.017s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.064s] +Building query seed array... [0.055s] +Computing hash join... [0.024s] +Masking low complexity seeds... [0.034s] +Searching alignments... [0.023s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] -Computing alignments... [0.122s] +Computing alignments... [3.539s] Deallocating reference... [0s] -Loading reference sequences... [0s] +Loading reference sequences... [0.01s] Deallocating buffers... [0s] -Deallocating queries... [0s] -Loading query sequences... [0s] -Closing the input file... [0s] -Closing the output file... [0.085s] -Closing the database... [0s] +Deallocating queries... [0.007s] +Loading query sequences... [0.003s] +Closing the input file... [0.003s] +Closing the output file... [0.001s] +Closing the database... [0.006s] Cleaning up... [0s] -Total time = 0.908s +Total time = 18.055s Reported 489 pairwise alignments, 489 HSPs. 32 queries aligned. -+ diamond blastp --threads 1 --db test/L.faa.diamond --query test/E.faa --out /tmp/tmp.72ZJtdlCl4/E.faa.vs.L.faa.diamond -e 1e-05 --outfmt 6 --sensitive ++ diamond blastp --threads 1 --db test/L.faa.diamond --query test/E.faa --out /tmp/tmp.A8efFsAV1o/E.faa.vs.L.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.11.165 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) -Temporary directory: /tmp/tmp.72ZJtdlCl4 +Temporary directory: /tmp/tmp.A8efFsAV1o #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/L.faa.diamond (type: Diamond database, sequences: 40, letters: 26652) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] -Loading query sequences... [0s] -Masking queries... [0.003s] +Loading query sequences... [0.001s] +Masking queries... [0.058s] Algorithm: Double-indexed -Building query histograms... [0.01s] +Building query histograms... [0.212s] Seeking in database... [0s] Loading reference sequences... [0s] -Masking reference... [0.001s] -Initializing temporary storage... [0.072s] -Building reference histograms... [0.005s] +Masking reference... [0.02s] +Initializing temporary storage... [0.002s] +Building reference histograms... [0.13s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.056s] +Building query seed array... [0.056s] +Computing hash join... [0.031s] +Masking low complexity seeds... [0.017s] +Searching alignments... [0.064s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.037s] +Building query seed array... [0.059s] +Computing hash join... [0.031s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.06s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.07s] +Building query seed array... [0.046s] +Computing hash join... [0.031s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.069s] +Building query seed array... [0.056s] +Computing hash join... [0.014s] +Masking low complexity seeds... [0.028s] +Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.071s] +Building query seed array... [0.045s] +Computing hash join... [0.049s] +Masking low complexity seeds... [0.029s] +Searching alignments... [0.032s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.06s] +Building query seed array... [0.071s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.069s] +Building query seed array... [0.053s] +Computing hash join... [0.033s] +Masking low complexity seeds... [0.046s] +Searching alignments... [0.047s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.084s] +Building query seed array... [0.084s] +Computing hash join... [0.021s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.057s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.086s] +Building query seed array... [0.07s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.022s] +Searching alignments... [0.032s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.031s] +Building query seed array... [0.061s] +Computing hash join... [0.033s] +Masking low complexity seeds... [0.01s] +Searching alignments... [0.038s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.047s] +Building query seed array... [0.03s] +Computing hash join... [0.043s] +Masking low complexity seeds... [0.035s] +Searching alignments... [0.024s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.034s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.016s] +Building query seed array... [0.053s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.032s] +Searching alignments... [0.025s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.026s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.05s] +Building query seed array... [0.059s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.029s] +Searching alignments... [0.04s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.053s] +Building query seed array... [0.038s] +Computing hash join... [0.04s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.057s] +Building query seed array... [0.047s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.029s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.048s] +Building query seed array... [0.041s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.024s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.041s] +Building query seed array... [0.045s] +Computing hash join... [0.013s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.036s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.069s] +Building query seed array... [0.054s] +Computing hash join... [0.04s] +Masking low complexity seeds... [0.047s] +Searching alignments... [0.036s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.041s] +Building query seed array... [0.07s] +Computing hash join... [0.021s] +Masking low complexity seeds... [0.032s] +Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.054s] +Building query seed array... [0.069s] +Computing hash join... [0.026s] +Masking low complexity seeds... [0.025s] +Searching alignments... [0.039s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.066s] +Building query seed array... [0.047s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.064s] +Building query seed array... [0.042s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.039s] +Building query seed array... [0.03s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.041s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.047s] +Building query seed array... [0.036s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.046s] +Building query seed array... [0.051s] +Computing hash join... [0.031s] +Masking low complexity seeds... [0.013s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.057s] +Building query seed array... [0.047s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.055s] +Building query seed array... [0.043s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.046s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.063s] +Building query seed array... [0.045s] +Computing hash join... [0.029s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.043s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.01s] +Building query seed array... [0.056s] +Computing hash join... [0.026s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] +Building reference seed array... [0.002s] +Building query seed array... [0.026s] +Computing hash join... [0.006s] Masking low complexity seeds... [0s] -Searching alignments... [0s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] +Building reference seed array... [0.02s] +Building query seed array... [0.059s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0s] +Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] +Building reference seed array... [0.007s] +Building query seed array... [0.06s] Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Masking low complexity seeds... [0.008s] +Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] +Building reference seed array... [0.026s] +Building query seed array... [0.038s] +Computing hash join... [0.001s] Masking low complexity seeds... [0s] -Searching alignments... [0s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.033s] +Building query seed array... [0.065s] +Computing hash join... [0.026s] +Masking low complexity seeds... [0.016s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.031s] +Building query seed array... [0.035s] +Computing hash join... [0.006s] +Masking low complexity seeds... [0.026s] +Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] +Building reference seed array... [0.002s] +Building query seed array... [0.005s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0s] +Searching alignments... [0.031s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] +Building reference seed array... [0.051s] +Building query seed array... [0.049s] Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Masking low complexity seeds... [0.032s] +Searching alignments... [0.051s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.025s] +Building query seed array... [0.024s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] +Building reference seed array... [0.018s] +Building query seed array... [0.031s] Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Masking low complexity seeds... [0.036s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] +Building reference seed array... [0.019s] +Building query seed array... [0.014s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0s] +Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.04s] +Building query seed array... [0.026s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.004s] +Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.023s] +Building query seed array... [0.052s] +Computing hash join... [0.017s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.045s] +Building query seed array... [0.027s] +Computing hash join... [0.004s] +Masking low complexity seeds... [0.018s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.017s] +Building query seed array... [0.023s] +Computing hash join... [0.002s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.024s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.006s] +Building query seed array... [0.059s] +Computing hash join... [0.006s] +Masking low complexity seeds... [0.003s] +Searching alignments... [0.031s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.012s] +Building query seed array... [0.031s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.039s] +Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.051s] +Building query seed array... [0.016s] +Computing hash join... [0.005s] +Masking low complexity seeds... [0.005s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.053s] +Building query seed array... [0.036s] +Computing hash join... [0.009s] +Masking low complexity seeds... [0.021s] +Searching alignments... [0.042s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.023s] +Building query seed array... [0.027s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.051s] +Building query seed array... [0.043s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.047s] +Building query seed array... [0.055s] +Computing hash join... [0.003s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.047s] +Building query seed array... [0.091s] +Computing hash join... [0.003s] +Masking low complexity seeds... [0.003s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.043s] +Building query seed array... [0.059s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.008s] +Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.023s] +Building query seed array... [0.047s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.048s] +Building query seed array... [0.038s] +Computing hash join... [0.003s] +Masking low complexity seeds... [0.004s] +Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.063s] +Building query seed array... [0.043s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.061s] +Building query seed array... [0.047s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.046s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.041s] +Building query seed array... [0.049s] +Computing hash join... [0.013s] +Masking low complexity seeds... [0.035s] +Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0.001s] -Searching alignments... [0s] +Building reference seed array... [0.061s] +Building query seed array... [0.053s] +Computing hash join... [0.025s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.046s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.053s] +Building query seed array... [0.035s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.056s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.045s] +Building query seed array... [0.042s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.055s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.061s] +Building query seed array... [0.047s] +Computing hash join... [0.025s] +Masking low complexity seeds... [0.018s] +Searching alignments... [0.045s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] -Computing alignments... [0.243s] +Computing alignments... [3.418s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] -Closing the output file... [0.105s] +Closing the output file... [0.002s] Closing the database... [0s] Cleaning up... [0s] -Total time = 0.918s +Total time = 15.039s Reported 1173 pairwise alignments, 1173 HSPs. 72 queries aligned. -+ diamond blastp --threads 1 --db test/E.faa.diamond --query test/M.faa --out /tmp/tmp.72ZJtdlCl4/M.faa.vs.E.faa.diamond -e 1e-05 --outfmt 6 --sensitive ++ diamond blastp --threads 1 --db test/E.faa.diamond --query test/M.faa --out /tmp/tmp.A8efFsAV1o/M.faa.vs.E.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.11.165 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) -Temporary directory: /tmp/tmp.72ZJtdlCl4 +Temporary directory: /tmp/tmp.A8efFsAV1o #Target sequences to report alignments for: 25 -Opening the database... [0s] +Opening the database... [0.007s] Database: test/E.faa.diamond (type: Diamond database, sequences: 72, letters: 54509) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] -Loading query sequences... [0s] -Masking queries... [0.001s] +Loading query sequences... [0.006s] +Masking queries... [0.045s] Algorithm: Double-indexed -Building query histograms... [0.005s] +Building query histograms... [0.095s] Seeking in database... [0s] Loading reference sequences... [0s] -Masking reference... [0.003s] -Initializing temporary storage... [0.179s] -Building reference histograms... [0.01s] +Masking reference... [0.062s] +Initializing temporary storage... [0.013s] +Building reference histograms... [0.114s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.05s] +Building query seed array... [0.042s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.03s] +Searching alignments... [0.067s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.051s] +Building query seed array... [0.057s] +Computing hash join... [0.028s] +Masking low complexity seeds... [0.016s] +Searching alignments... [0.045s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] -Deallocating memory... [0s] +Building reference seed array... [0.085s] +Building query seed array... [0.04s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.021s] +Searching alignments... [0.047s] +Deallocating memory... [0.006s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.034s] +Building query seed array... [0.053s] +Computing hash join... [0.034s] +Masking low complexity seeds... [0.018s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.039s] +Building query seed array... [0.042s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.03s] +Searching alignments... [0.04s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.062s] +Building query seed array... [0.038s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.035s] +Searching alignments... [0.032s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.051s] +Building query seed array... [0.03s] +Computing hash join... [0.02s] +Masking low complexity seeds... [0.009s] +Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.034s] +Building query seed array... [0.025s] +Computing hash join... [0.009s] +Masking low complexity seeds... [0.034s] +Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.049s] +Building query seed array... [0.059s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.043s] +Building query seed array... [0.062s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.018s] +Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.064s] +Building query seed array... [0.051s] +Computing hash join... [0.025s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.067s] +Building query seed array... [0.047s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.041s] +Searching alignments... [0.032s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.071s] +Building query seed array... [0.062s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.037s] +Searching alignments... [0.054s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.036s] +Building query seed array... [0.057s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.024s] +Searching alignments... [0.04s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.112s] +Building query seed array... [0.067s] +Computing hash join... [0.04s] +Masking low complexity seeds... [0.033s] +Searching alignments... [0.029s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.061s] +Building query seed array... [0.052s] +Computing hash join... [0.021s] +Masking low complexity seeds... [0.022s] +Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.068s] +Building query seed array... [0.04s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.016s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.033s] +Building query seed array... [0.053s] +Computing hash join... [0.05s] +Masking low complexity seeds... [0.064s] +Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.052s] +Building query seed array... [0.032s] +Computing hash join... [0.033s] +Masking low complexity seeds... [0.017s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.038s] +Building query seed array... [0.043s] +Computing hash join... [0.017s] +Masking low complexity seeds... [0.013s] +Searching alignments... [0.118s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.041s] +Building query seed array... [0.049s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.045s] +Building query seed array... [0.059s] +Computing hash join... [0.028s] +Masking low complexity seeds... [0.03s] +Searching alignments... [0.031s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.049s] +Building query seed array... [0.068s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.059s] +Searching alignments... [0.033s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.062s] +Building query seed array... [0.027s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.032s] +Searching alignments... [0.042s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.089s] +Building query seed array... [0.029s] +Computing hash join... [0.042s] +Masking low complexity seeds... [0.034s] +Searching alignments... [0.044s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.077s] +Building query seed array... [0.157s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.068s] +Building query seed array... [0.032s] +Computing hash join... [0.013s] +Masking low complexity seeds... [0.018s] +Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.043s] +Building query seed array... [0.038s] +Computing hash join... [0.024s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.062s] +Building query seed array... [0.069s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.048s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.071s] +Building query seed array... [0.06s] +Computing hash join... [0.014s] +Masking low complexity seeds... [0.034s] +Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.065s] +Building query seed array... [0.05s] +Computing hash join... [0.029s] +Masking low complexity seeds... [0.017s] +Searching alignments... [0.037s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.074s] +Building query seed array... [0.078s] +Computing hash join... [0.008s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.07s] +Building query seed array... [0.105s] +Computing hash join... [0.024s] +Masking low complexity seeds... [0.026s] +Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.072s] +Building query seed array... [0.047s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.033s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.075s] +Building query seed array... [0.057s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.045s] +Searching alignments... [0.053s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.058s] +Building query seed array... [0.057s] +Computing hash join... [0.017s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.037s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.063s] +Building query seed array... [0.041s] +Computing hash join... [0.013s] +Masking low complexity seeds... [0.045s] +Searching alignments... [0.046s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.044s] +Building query seed array... [0.045s] +Computing hash join... [0.038s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.081s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.068s] +Building query seed array... [0.069s] +Computing hash join... [0.031s] +Masking low complexity seeds... [0.033s] +Searching alignments... [0.056s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.08s] +Building query seed array... [0.048s] +Computing hash join... [0.031s] +Masking low complexity seeds... [0.043s] +Searching alignments... [0.049s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.055s] +Building query seed array... [0.086s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.029s] +Searching alignments... [0.055s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.059s] +Computing hash join... [0.026s] +Masking low complexity seeds... [0.04s] +Searching alignments... [0.042s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.055s] +Building query seed array... [0.045s] +Computing hash join... [0.038s] +Masking low complexity seeds... [0.04s] +Searching alignments... [0.054s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.046s] +Building query seed array... [0.046s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.008s] +Searching alignments... [0.025s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.039s] +Building query seed array... [0.034s] +Computing hash join... [0.013s] +Masking low complexity seeds... [0.017s] +Searching alignments... [0.025s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.074s] +Building query seed array... [0.069s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.016s] +Searching alignments... [0.05s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.06s] +Building query seed array... [0.054s] +Computing hash join... [0.017s] +Masking low complexity seeds... [0.013s] +Searching alignments... [0.037s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.044s] +Building query seed array... [0.039s] +Computing hash join... [0.032s] +Masking low complexity seeds... [0.013s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.063s] +Building query seed array... [0.041s] +Computing hash join... [0.029s] +Masking low complexity seeds... [0.024s] +Searching alignments... [0.051s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.038s] +Building query seed array... [0.047s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.057s] +Building query seed array... [0.05s] +Computing hash join... [0.026s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.031s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.04s] +Building query seed array... [0.05s] +Computing hash join... [0.025s] +Masking low complexity seeds... [0.016s] +Searching alignments... [0.049s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.064s] +Computing hash join... [0.04s] +Masking low complexity seeds... [0.012s] +Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.055s] +Building query seed array... [0.057s] +Computing hash join... [0.024s] +Masking low complexity seeds... [0.02s] +Searching alignments... [0.049s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.06s] +Building query seed array... [0.07s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.03s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.081s] +Building query seed array... [0.041s] +Computing hash join... [0.025s] +Masking low complexity seeds... [0.042s] +Searching alignments... [0.039s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.054s] +Building query seed array... [0.047s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.02s] +Searching alignments... [0.046s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.057s] +Building query seed array... [0.059s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.04s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.067s] +Building query seed array... [0.047s] +Computing hash join... [0.026s] +Masking low complexity seeds... [0.014s] +Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.038s] +Building query seed array... [0.053s] +Computing hash join... [0.013s] +Masking low complexity seeds... [0.055s] +Searching alignments... [0.044s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.06s] +Building query seed array... [0.056s] +Computing hash join... [0.021s] +Masking low complexity seeds... [0.04s] +Searching alignments... [0.041s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.057s] +Building query seed array... [0.055s] +Computing hash join... [0.017s] +Masking low complexity seeds... [0.024s] +Searching alignments... [0.062s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.075s] +Building query seed array... [0.088s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.012s] +Searching alignments... [0.039s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.053s] +Building query seed array... [0.032s] +Computing hash join... [0.029s] +Masking low complexity seeds... [0.009s] +Searching alignments... [0.024s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] -Computing alignments... [0.124s] +Computing alignments... [2.992s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] -Closing the output file... [0s] +Closing the output file... [0.012s] Closing the database... [0s] Cleaning up... [0s] -Total time = 0.803s +Total time = 17.113s Reported 489 pairwise alignments, 489 HSPs. 32 queries aligned. -+ diamond blastp --threads 1 --db test/M.faa.diamond --query test/E.faa --out /tmp/tmp.72ZJtdlCl4/E.faa.vs.M.faa.diamond -e 1e-05 --outfmt 6 --sensitive ++ diamond blastp --threads 1 --db test/M.faa.diamond --query test/E.faa --out /tmp/tmp.A8efFsAV1o/E.faa.vs.M.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.11.165 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) -Temporary directory: /tmp/tmp.72ZJtdlCl4 +Temporary directory: /tmp/tmp.A8efFsAV1o #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/M.faa.diamond (type: Diamond database, sequences: 40, letters: 26963) Block size = 2000000000 -Opening the input file... [0s] +Opening the input file... [0.02s] Opening the output file... [0s] -Loading query sequences... [0s] -Masking queries... [0.003s] +Loading query sequences... [0.001s] +Masking queries... [0.106s] Algorithm: Double-indexed -Building query histograms... [0.01s] +Building query histograms... [0.163s] Seeking in database... [0s] Loading reference sequences... [0s] -Masking reference... [0.001s] -Initializing temporary storage... [0.001s] -Building reference histograms... [0.005s] +Masking reference... [0.019s] +Initializing temporary storage... [0.002s] +Building reference histograms... [0.121s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.04s] +Building query seed array... [0.03s] +Computing hash join... [0.009s] +Masking low complexity seeds... [0.028s] +Searching alignments... [0.041s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.076s] +Building query seed array... [0.071s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.042s] +Searching alignments... [0.063s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.045s] +Building query seed array... [0.033s] +Computing hash join... [0.017s] +Masking low complexity seeds... [0.01s] +Searching alignments... [0.024s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.048s] +Building query seed array... [0.078s] +Computing hash join... [0.021s] +Masking low complexity seeds... [0.017s] +Searching alignments... [0.037s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.037s] +Building query seed array... [0.044s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.029s] +Searching alignments... [0.042s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.047s] +Building query seed array... [0.043s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.038s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.063s] +Building query seed array... [0.027s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.043s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.046s] +Building query seed array... [0.06s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.038s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.043s] +Building query seed array... [0.052s] +Computing hash join... [0.031s] +Masking low complexity seeds... [0.028s] +Searching alignments... [0.045s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.047s] +Building query seed array... [0.067s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.037s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.048s] +Building query seed array... [0.047s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.043s] +Searching alignments... [0.037s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.052s] +Building query seed array... [0.051s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.049s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.055s] +Building query seed array... [0.063s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.046s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.058s] +Building query seed array... [0.047s] +Computing hash join... [0.035s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.05s] +Building query seed array... [0.039s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.032s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.056s] +Building query seed array... [0.043s] +Computing hash join... [0.031s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.041s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.05s] +Building query seed array... [0.047s] +Computing hash join... [0.021s] +Masking low complexity seeds... [0.021s] +Searching alignments... [0.038s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.048s] +Building query seed array... [0.048s] +Computing hash join... [0.014s] +Masking low complexity seeds... [0.014s] +Searching alignments... [0.025s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.033s] +Building query seed array... [0.038s] +Computing hash join... [0.045s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.036s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.049s] +Building query seed array... [0.061s] +Computing hash join... [0.029s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.031s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.05s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.034s] +Searching alignments... [0.036s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.041s] +Building query seed array... [0.044s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.048s] +Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.031s] +Building query seed array... [0.067s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.021s] +Searching alignments... [0.024s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.056s] +Building query seed array... [0.056s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.021s] +Searching alignments... [0.029s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.047s] +Building query seed array... [0.056s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.039s] +Searching alignments... [0.046s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.043s] +Building query seed array... [0.056s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.061s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.048s] +Building query seed array... [0.044s] +Computing hash join... [0.025s] +Masking low complexity seeds... [0.024s] +Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.036s] +Building query seed array... [0.045s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.035s] +Searching alignments... [0.033s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.052s] +Building query seed array... [0.039s] +Computing hash join... [0.036s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.04s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.049s] +Building query seed array... [0.068s] +Computing hash join... [0.03s] +Masking low complexity seeds... [0.025s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.049s] +Computing hash join... [0.03s] +Masking low complexity seeds... [0.022s] +Searching alignments... [0.032s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.068s] +Building query seed array... [0.064s] +Computing hash join... [0.026s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.044s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.045s] +Building query seed array... [0.057s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.036s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.07s] +Building query seed array... [0.039s] +Computing hash join... [0.032s] +Masking low complexity seeds... [0.043s] +Searching alignments... [0.046s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.05s] +Building query seed array... [0.04s] +Computing hash join... [0.026s] +Masking low complexity seeds... [0.02s] +Searching alignments... [0.036s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.062s] +Building query seed array... [0.039s] +Computing hash join... [0.04s] +Masking low complexity seeds... [0.032s] +Searching alignments... [0.029s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.096s] +Building query seed array... [0.05s] +Computing hash join... [0.028s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.04s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.081s] +Building query seed array... [0.04s] +Computing hash join... [0.026s] +Masking low complexity seeds... [0.028s] +Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.044s] +Building query seed array... [0.052s] +Computing hash join... [0.031s] +Masking low complexity seeds... [0.018s] +Searching alignments... [0.043s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.028s] +Building query seed array... [0.055s] +Computing hash join... [0.045s] +Masking low complexity seeds... [0.017s] +Searching alignments... [0.042s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.044s] +Building query seed array... [0.07s] +Computing hash join... [0.024s] +Masking low complexity seeds... [0.02s] +Searching alignments... [0.057s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.059s] +Building query seed array... [0.055s] +Computing hash join... [0.039s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.057s] +Building query seed array... [0.064s] +Computing hash join... [0.037s] +Masking low complexity seeds... [0.009s] +Searching alignments... [0.031s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.047s] +Building query seed array... [0.066s] +Computing hash join... [0.042s] +Masking low complexity seeds... [0.01s] +Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.065s] +Building query seed array... [0.037s] +Computing hash join... [0.004s] +Masking low complexity seeds... [0.004s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.053s] +Building query seed array... [0.045s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.039s] +Building query seed array... [0.046s] +Computing hash join... [0.029s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.057s] +Building query seed array... [0.025s] +Computing hash join... [0.031s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.045s] +Building query seed array... [0.083s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.022s] +Searching alignments... [0.048s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.066s] +Building query seed array... [0.039s] +Computing hash join... [0.04s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.06s] +Building query seed array... [0.047s] +Computing hash join... [0.03s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.024s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.046s] +Building query seed array... [0.046s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.03s] +Searching alignments... [0.037s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.05s] +Building query seed array... [0.057s] +Computing hash join... [0.029s] +Masking low complexity seeds... [0.026s] +Searching alignments... [0.037s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.048s] +Building query seed array... [0.048s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.046s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.028s] +Building query seed array... [0.049s] +Computing hash join... [0.017s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.019s] +Building query seed array... [0.022s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.001s] +Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.047s] +Building query seed array... [0.038s] +Computing hash join... [0.032s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.044s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.063s] +Building query seed array... [0.061s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.021s] +Searching alignments... [0.032s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.034s] +Building query seed array... [0.052s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.02s] +Searching alignments... [0.049s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.05s] +Building query seed array... [0.048s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.045s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.085s] +Building query seed array... [0.088s] +Computing hash join... [0.048s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.041s] +Building query seed array... [0.04s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.036s] +Searching alignments... [0.07s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.077s] +Building query seed array... [0.047s] +Computing hash join... [0.014s] +Masking low complexity seeds... [0.033s] +Searching alignments... [0.035s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] -Computing alignments... [0.266s] -Deallocating reference... [0s] +Computing alignments... [6.548s] +Deallocating reference... [0.012s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] -Closing the output file... [0s] -Closing the database... [0s] -Cleaning up... [0s] -Total time = 0.746s +Closing the output file... [0.031s] +Closing the database... [0.011s] +Cleaning up... [0.003s] +Total time = 19.805s Reported 1173 pairwise alignments, 1173 HSPs. 72 queries aligned. -+ diamond blastp --ignore-warnings --threads 1 --db test/E.faa.diamond --query test/C2.faa --out /tmp/tmp.72ZJtdlCl4/C2.faa.vs.E.faa.diamond -e 1e-05 --outfmt 6 --sensitive ++ diamond blastp --ignore-warnings --threads 1 --db test/E.faa.diamond --query test/C2.faa --out /tmp/tmp.A8efFsAV1o/C2.faa.vs.E.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.11.165 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) -Temporary directory: /tmp/tmp.72ZJtdlCl4 +Temporary directory: /tmp/tmp.A8efFsAV1o #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/E.faa.diamond (type: Diamond database, sequences: 72, letters: 54509) Block size = 2000000000 -Opening the input file... [0s] -Opening the output file... [0s] +Opening the input file... [0.003s] +Opening the output file... [0.003s] Loading query sequences... [0s] -Masking queries... [0s] +Masking queries... [0.032s] Algorithm: Double-indexed -Building query histograms... [0s] +Building query histograms... [0.059s] Seeking in database... [0s] Loading reference sequences... [0s] -Masking reference... [0.003s] -Initializing temporary storage... [0.002s] -Building reference histograms... [0.01s] +Masking reference... [0.065s] +Initializing temporary storage... [0.024s] +Building reference histograms... [0.177s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.043s] +Building query seed array... [0.058s] +Computing hash join... [0.034s] +Masking low complexity seeds... [0.026s] +Searching alignments... [0.032s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.056s] +Building query seed array... [0.049s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.016s] +Searching alignments... [0.039s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.051s] +Building query seed array... [0.051s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.032s] +Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.049s] +Building query seed array... [0.057s] +Computing hash join... [0.028s] +Masking low complexity seeds... [0.026s] +Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. -Building reference seed array... [0.003s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.069s] +Building query seed array... [0.056s] +Computing hash join... [0.032s] +Masking low complexity seeds... [0.03s] +Searching alignments... [0.032s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.064s] +Building query seed array... [0.041s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.022s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.056s] +Building query seed array... [0.035s] +Computing hash join... [0.041s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.083s] +Building query seed array... [0.053s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.061s] +Building query seed array... [0.045s] +Computing hash join... [0.025s] +Masking low complexity seeds... [0.004s] +Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.037s] +Building query seed array... [0.039s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.044s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.052s] +Building query seed array... [0.037s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.032s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.052s] +Building query seed array... [0.05s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.042s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.039s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.064s] +Building query seed array... [0.041s] +Computing hash join... [0.024s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.027s] +Building query seed array... [0.039s] +Computing hash join... [0.021s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.028s] +Building query seed array... [0.047s] +Computing hash join... [0.009s] +Masking low complexity seeds... [0.009s] +Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.075s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.083s] +Building query seed array... [0.022s] +Computing hash join... [0.031s] +Masking low complexity seeds... [0.036s] +Searching alignments... [0.048s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.046s] +Building query seed array... [0.058s] +Computing hash join... [0.037s] +Masking low complexity seeds... [0.013s] +Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] +Building reference seed array... [0.022s] +Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0s] +Searching alignments... [0.048s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.016s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.045s] +Computing hash join... [0.013s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.039s] +Building query seed array... [0.057s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.042s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.053s] +Building query seed array... [0.066s] +Computing hash join... [0.031s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.053s] +Building query seed array... [0.045s] +Computing hash join... [0.006s] +Masking low complexity seeds... [0.014s] +Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.036s] +Building query seed array... [0.027s] +Computing hash join... [0.013s] +Masking low complexity seeds... [0.034s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.044s] +Building query seed array... [0.065s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.047s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. -Building reference seed array... [0.003s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.047s] +Building query seed array... [0.042s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.052s] +Building query seed array... [0.049s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.048s] +Building query seed array... [0.049s] +Computing hash join... [0.024s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.044s] +Building query seed array... [0.046s] +Computing hash join... [0.028s] +Masking low complexity seeds... [0.029s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.052s] +Building query seed array... [0.062s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.022s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.023s] +Building query seed array... [0.02s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.024s] +Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.007s] +Building query seed array... [0.035s] +Computing hash join... [0.02s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.025s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.057s] +Building query seed array... [0.041s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.031s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.059s] +Building query seed array... [0.038s] +Computing hash join... [0.031s] +Masking low complexity seeds... [0.022s] +Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.072s] +Building query seed array... [0.043s] +Computing hash join... [0.037s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.038s] +Building query seed array... [0.095s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.038s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.061s] +Building query seed array... [0.059s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.061s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.071s] +Building query seed array... [0.029s] +Computing hash join... [0.02s] +Masking low complexity seeds... [0.014s] +Searching alignments... [0.061s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.039s] +Building query seed array... [0.113s] +Computing hash join... [0.013s] +Masking low complexity seeds... [0.033s] +Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.084s] +Building query seed array... [0.067s] +Computing hash join... [0.039s] +Masking low complexity seeds... [0.043s] +Searching alignments... [0.036s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.049s] +Building query seed array... [0.068s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.016s] +Searching alignments... [0.045s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.07s] +Building query seed array... [0.06s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.018s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.059s] +Building query seed array... [0.062s] +Computing hash join... [0.047s] +Masking low complexity seeds... [0.039s] +Searching alignments... [0.029s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.047s] +Building query seed array... [0.045s] +Computing hash join... [0.06s] +Masking low complexity seeds... [0.01s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.029s] +Building query seed array... [0.089s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.107s] +Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.077s] +Building query seed array... [0.027s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.043s] +Building query seed array... [0.127s] +Computing hash join... [0.107s] +Masking low complexity seeds... [0.017s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.082s] +Building query seed array... [0.12s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.014s] +Searching alignments... [0.086s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.027s] +Building query seed array... [0.019s] +Computing hash join... [0.013s] +Masking low complexity seeds... [0.077s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.078s] +Building query seed array... [0.136s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.051s] +Building query seed array... [0.063s] +Computing hash join... [0.059s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.079s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.05s] +Building query seed array... [0.015s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.039s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.02s] +Building query seed array... [0.032s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.026s] +Building query seed array... [0.059s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.024s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.061s] +Building query seed array... [0.027s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.046s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.035s] +Computing hash join... [0.031s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.05s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.038s] +Building query seed array... [0.045s] +Computing hash join... [0.026s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.066s] +Building query seed array... [0.027s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.053s] +Building query seed array... [0.044s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.028s] +Searching alignments... [0.058s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.053s] +Building query seed array... [0.047s] +Computing hash join... [0.035s] +Masking low complexity seeds... [0.026s] +Searching alignments... [0.039s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.053s] +Building query seed array... [0.063s] +Computing hash join... [0.031s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.066s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] -Computing alignments... [0.003s] +Computing alignments... [0.073s] Deallocating reference... [0s] -Loading reference sequences... [0s] +Loading reference sequences... [0.004s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] @@ -7451,991 +7487,991 @@ Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] -Total time = 0.367s +Total time = 13.08s Reported 1 pairwise alignments, 1 HSPs. 1 queries aligned. -+ diamond blastp --threads 1 --db test/C2.faa.diamond --query test/E.faa --out /tmp/tmp.72ZJtdlCl4/E.faa.vs.C2.faa.diamond -e 1e-05 --outfmt 6 --sensitive ++ diamond blastp --threads 1 --db test/C2.faa.diamond --query test/E.faa --out /tmp/tmp.A8efFsAV1o/E.faa.vs.C2.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.11.165 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) -Temporary directory: /tmp/tmp.72ZJtdlCl4 +Temporary directory: /tmp/tmp.A8efFsAV1o #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/C2.faa.diamond (type: Diamond database, sequences: 2, letters: 726) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] -Loading query sequences... [0s] -Masking queries... [0.003s] +Loading query sequences... [0.004s] +Masking queries... [0.028s] Algorithm: Double-indexed -Building query histograms... [0.01s] +Building query histograms... [0.02s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0s] -Initializing temporary storage... [0s] +Initializing temporary storage... [0.001s] Building reference histograms... [0s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0s] -Building query seed array... [0.002s] +Building query seed array... [0.004s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0s] -Building query seed array... [0.003s] +Building query seed array... [0.004s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building query seed array... [0.004s] +Computing hash join... [0.024s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] +Building reference seed array... [0.025s] +Building query seed array... [0.004s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0s] +Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0s] -Building query seed array... [0.002s] +Building query seed array... [0.004s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0s] +Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building query seed array... [0.06s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.029s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.038s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.057s] +Building query seed array... [0.041s] +Computing hash join... [0.028s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.038s] +Building query seed array... [0.059s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.059s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.045s] +Building query seed array... [0.039s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.042s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.034s] +Building query seed array... [0.035s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.029s] +Building query seed array... [0.065s] +Computing hash join... [0.014s] +Masking low complexity seeds... [0.022s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.041s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.037s] +Building query seed array... [0.051s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.026s] +Searching alignments... [0.038s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.058s] +Building query seed array... [0.079s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.045s] +Building query seed array... [0.046s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.039s] +Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.077s] +Building query seed array... [0.059s] +Computing hash join... [0.04s] +Masking low complexity seeds... [0.026s] +Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.057s] +Building query seed array... [0.055s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.069s] +Building query seed array... [0.051s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.049s] +Building query seed array... [0.053s] +Computing hash join... [0.029s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.061s] +Building query seed array... [0.059s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.042s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.049s] +Building query seed array... [0.047s] +Computing hash join... [0.025s] +Masking low complexity seeds... [0.029s] +Searching alignments... [0.038s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.062s] +Building query seed array... [0.055s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.069s] +Building query seed array... [0.045s] +Computing hash join... [0.033s] +Masking low complexity seeds... [0.035s] +Searching alignments... [0.038s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.055s] +Building query seed array... [0.05s] +Computing hash join... [0.044s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.097s] +Building query seed array... [0.067s] +Computing hash join... [0.031s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.054s] +Building query seed array... [0.031s] +Computing hash join... [0.025s] +Masking low complexity seeds... [0.033s] +Searching alignments... [0.042s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.053s] +Building query seed array... [0.055s] +Computing hash join... [0.035s] +Masking low complexity seeds... [0.036s] +Searching alignments... [0.037s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.071s] +Building query seed array... [0.055s] +Computing hash join... [0.037s] +Masking low complexity seeds... [0.037s] +Searching alignments... [0.035s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.046s] +Building query seed array... [0.058s] +Computing hash join... [0.009s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.057s] +Computing hash join... [0.026s] +Masking low complexity seeds... [0.042s] +Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.029s] +Building query seed array... [0.042s] +Computing hash join... [0.017s] +Masking low complexity seeds... [0.029s] +Searching alignments... [0.025s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.041s] +Building query seed array... [0.031s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.054s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.031s] +Building query seed array... [0.038s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.065s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.05s] +Building query seed array... [0.031s] +Computing hash join... [0.031s] +Masking low complexity seeds... [0.035s] +Searching alignments... [0.033s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.045s] +Building query seed array... [0.047s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.021s] +Building query seed array... [0.045s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.009s] +Searching alignments... [0.057s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.041s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.045s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.038s] +Building query seed array... [0.048s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.045s] +Building query seed array... [0.045s] +Computing hash join... [0.026s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.025s] +Building query seed array... [0.043s] +Computing hash join... [0.028s] +Masking low complexity seeds... [0.022s] +Searching alignments... [0.037s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.038s] +Building query seed array... [0.025s] +Computing hash join... [0.013s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.027s] +Building query seed array... [0.049s] +Computing hash join... [0.013s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.037s] +Building query seed array... [0.05s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.009s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.073s] +Building query seed array... [0.072s] +Computing hash join... [0.017s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.034s] +Computing hash join... [0.048s] +Masking low complexity seeds... [0.014s] +Searching alignments... [0.044s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.07s] +Building query seed array... [0.044s] +Computing hash join... [0.013s] +Masking low complexity seeds... [0.008s] +Searching alignments... [0.047s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.036s] +Computing hash join... [0.021s] +Masking low complexity seeds... [0.021s] +Searching alignments... [0.035s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.034s] +Building query seed array... [0.044s] +Computing hash join... [0.035s] +Masking low complexity seeds... [0.017s] +Searching alignments... [0.029s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.044s] +Building query seed array... [0.052s] +Computing hash join... [0.029s] +Masking low complexity seeds... [0.043s] +Searching alignments... [0.055s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.026s] +Building query seed array... [0.044s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.014s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.025s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.024s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.037s] +Building query seed array... [0.041s] +Computing hash join... [0.021s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.033s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.041s] +Building query seed array... [0.045s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.024s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.045s] +Building query seed array... [0.042s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.02s] +Searching alignments... [0.032s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.04s] +Building query seed array... [0.049s] +Computing hash join... [0.014s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.035s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.038s] +Building query seed array... [0.037s] +Computing hash join... [0.026s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.034s] +Building query seed array... [0.047s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.02s] +Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.038s] +Building query seed array... [0.043s] +Computing hash join... [0.024s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.047s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.04s] +Building query seed array... [0.039s] +Computing hash join... [0.02s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.031s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.074s] +Building query seed array... [0.041s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.026s] +Searching alignments... [0.032s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.043s] +Building query seed array... [0.048s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.014s] +Searching alignments... [0.024s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.064s] +Building query seed array... [0.061s] +Computing hash join... [0.03s] +Masking low complexity seeds... [0.018s] +Searching alignments... [0.02s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] -Computing alignments... [0.081s] +Computing alignments... [0.094s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] -Deallocating queries... [0s] +Deallocating queries... [0.006s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] -Total time = 0.442s +Total time = 10.995s Reported 1 pairwise alignments, 1 HSPs. 1 queries aligned. -+ diamond blastp --threads 1 --db test/L.faa.diamond --query test/M.faa --out /tmp/tmp.72ZJtdlCl4/M.faa.vs.L.faa.diamond -e 1e-05 --outfmt 6 --sensitive ++ diamond blastp --threads 1 --db test/L.faa.diamond --query test/M.faa --out /tmp/tmp.A8efFsAV1o/M.faa.vs.L.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.11.165 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) -Temporary directory: /tmp/tmp.72ZJtdlCl4 +Temporary directory: /tmp/tmp.A8efFsAV1o #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/L.faa.diamond (type: Diamond database, sequences: 40, letters: 26652) Block size = 2000000000 Opening the input file... [0s] -Opening the output file... [0s] -Loading query sequences... [0s] -Masking queries... [0.001s] +Opening the output file... [0.003s] +Loading query sequences... [0.004s] +Masking queries... [0.043s] Algorithm: Double-indexed -Building query histograms... [0.005s] +Building query histograms... [0.084s] Seeking in database... [0s] Loading reference sequences... [0s] -Masking reference... [0.001s] -Initializing temporary storage... [0s] -Building reference histograms... [0.005s] +Masking reference... [0.023s] +Initializing temporary storage... [0.011s] +Building reference histograms... [0.084s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.004s] +Building reference seed array... [0.059s] +Building query seed array... [0.03s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.008s] +Searching alignments... [0.035s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.003s] +Building reference seed array... [0.06s] +Building query seed array... [0.047s] +Computing hash join... [0.026s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.093s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.043s] +Building query seed array... [0.047s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.062s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.056s] +Building query seed array... [0.047s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.056s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.05s] +Building query seed array... [0.048s] +Computing hash join... [0.017s] +Masking low complexity seeds... [0.02s] +Searching alignments... [0.048s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.044s] +Building query seed array... [0.04s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.058s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.045s] +Building query seed array... [0.051s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.06s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.046s] +Building query seed array... [0.056s] +Computing hash join... [0.029s] +Masking low complexity seeds... [0.039s] +Searching alignments... [0.062s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.045s] +Building query seed array... [0.047s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.03s] +Searching alignments... [0.054s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.031s] +Building query seed array... [0.04s] +Computing hash join... [0.026s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.049s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.039s] +Building query seed array... [0.051s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.058s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.034s] +Building query seed array... [0.048s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.012s] +Searching alignments... [0.062s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.041s] +Building query seed array... [0.041s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.046s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.052s] +Building query seed array... [0.05s] +Computing hash join... [0.024s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.069s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.033s] +Building query seed array... [0.035s] +Computing hash join... [0.01s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.022s] +Building query seed array... [0.029s] +Computing hash join... [0.01s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.022s] +Building query seed array... [0.02s] +Computing hash join... [0.01s] +Masking low complexity seeds... [0.069s] +Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.047s] +Building query seed array... [0.037s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.02s] +Searching alignments... [0.038s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.017s] +Building query seed array... [0.02s] +Computing hash join... [0.058s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.08s] +Building query seed array... [0.017s] +Computing hash join... [0.008s] +Masking low complexity seeds... [0.038s] +Searching alignments... [0.029s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.054s] +Building query seed array... [0.071s] +Computing hash join... [0.021s] +Masking low complexity seeds... [0.044s] +Searching alignments... [0.08s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.061s] +Building query seed array... [0.07s] +Computing hash join... [0.043s] +Masking low complexity seeds... [0.054s] +Searching alignments... [0.081s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.084s] +Building query seed array... [0.083s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.04s] +Searching alignments... [0.076s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.028s] +Building query seed array... [0.042s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.018s] +Searching alignments... [0.025s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.033s] +Building query seed array... [0.025s] +Computing hash join... [0.014s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.033s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.05s] +Building query seed array... [0.031s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.017s] +Searching alignments... [0.045s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.035s] +Building query seed array... [0.038s] +Computing hash join... [0.01s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.007s] +Building query seed array... [0.004s] +Computing hash join... [0.001s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.08s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.043s] +Building query seed array... [0.031s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.034s] +Searching alignments... [0.057s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.034s] +Building query seed array... [0.015s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.019s] +Building query seed array... [0.039s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.038s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.031s] +Building query seed array... [0.019s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.062s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.031s] +Building query seed array... [0.027s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.046s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.047s] +Building query seed array... [0.047s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.025s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.04s] +Building query seed array... [0.039s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.062s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.047s] +Building query seed array... [0.023s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.058s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.034s] +Building query seed array... [0.019s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.02s] +Searching alignments... [0.06s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.039s] +Building query seed array... [0.039s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.057s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.048s] +Building query seed array... [0.044s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.08s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.045s] +Building query seed array... [0.047s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.01s] +Searching alignments... [0.025s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.037s] +Building query seed array... [0.039s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.076s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.033s] +Building query seed array... [0.047s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.041s] +Searching alignments... [0.064s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.049s] +Building query seed array... [0.035s] +Computing hash join... [0.014s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.06s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.029s] +Building query seed array... [0.066s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.076s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.049s] +Building query seed array... [0.052s] +Computing hash join... [0.01s] +Masking low complexity seeds... [0.039s] +Searching alignments... [0.052s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.044s] +Building query seed array... [0.048s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.084s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.043s] +Building query seed array... [0.055s] +Computing hash join... [0.031s] +Masking low complexity seeds... [0.042s] +Searching alignments... [0.076s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.049s] +Building query seed array... [0.058s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.02s] +Searching alignments... [0.096s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.051s] +Building query seed array... [0.04s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.02s] +Searching alignments... [0.083s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.042s] +Building query seed array... [0.055s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.076s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.043s] +Building query seed array... [0.023s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.044s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.028s] +Building query seed array... [0.023s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.055s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.034s] +Building query seed array... [0.026s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.077s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.053s] +Building query seed array... [0.051s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.067s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.073s] +Building query seed array... [0.063s] +Computing hash join... [0.031s] +Masking low complexity seeds... [0.035s] +Searching alignments... [0.067s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.065s] +Building query seed array... [0.035s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.018s] +Searching alignments... [0.085s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.032s] +Building query seed array... [0.051s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.061s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.041s] +Building query seed array... [0.042s] +Computing hash join... [0.024s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.08s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.045s] +Building query seed array... [0.04s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.062s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.04s] +Building query seed array... [0.039s] +Computing hash join... [0.026s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.066s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.044s] +Building query seed array... [0.04s] +Computing hash join... [0.026s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.073s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.045s] +Building query seed array... [0.041s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.016s] +Searching alignments... [0.081s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.044s] +Building query seed array... [0.038s] +Computing hash join... [0.024s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.056s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.043s] +Building query seed array... [0.05s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.082s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] -Computing alignments... [0.095s] +Computing alignments... [1.65s] Deallocating reference... [0s] -Loading reference sequences... [0s] +Loading reference sequences... [0.006s] Deallocating buffers... [0s] Deallocating queries... [0s] -Loading query sequences... [0s] -Closing the input file... [0s] +Loading query sequences... [0.004s] +Closing the input file... [0.007s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] -Total time = 0.603s +Total time = 14.608s Reported 390 pairwise alignments, 390 HSPs. 39 queries aligned. -+ diamond blastp --threads 1 --db test/M.faa.diamond --query test/L.faa --out /tmp/tmp.72ZJtdlCl4/L.faa.vs.M.faa.diamond -e 1e-05 --outfmt 6 --sensitive ++ diamond blastp --threads 1 --db test/M.faa.diamond --query test/L.faa --out /tmp/tmp.A8efFsAV1o/L.faa.vs.M.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.11.165 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) -Temporary directory: /tmp/tmp.72ZJtdlCl4 +Temporary directory: /tmp/tmp.A8efFsAV1o #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/M.faa.diamond (type: Diamond database, sequences: 40, letters: 26963) @@ -8443,466 +8479,466 @@ Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] -Masking queries... [0.001s] +Masking queries... [0.024s] Algorithm: Double-indexed -Building query histograms... [0.005s] +Building query histograms... [0.04s] Seeking in database... [0s] Loading reference sequences... [0s] -Masking reference... [0.001s] -Initializing temporary storage... [0.001s] -Building reference histograms... [0.005s] +Masking reference... [0.013s] +Initializing temporary storage... [0.008s] +Building reference histograms... [0.068s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.004s] -Deallocating memory... [0s] +Building reference seed array... [0.034s] +Building query seed array... [0.036s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.065s] +Deallocating memory... [0.005s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.003s] +Building reference seed array... [0.054s] +Building query seed array... [0.044s] +Computing hash join... [0.014s] +Masking low complexity seeds... [0.02s] +Searching alignments... [0.085s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.046s] +Building query seed array... [0.031s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.054s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.028s] +Building query seed array... [0.035s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.049s] +Building query seed array... [0.038s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.014s] +Searching alignments... [0.047s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.024s] +Building query seed array... [0.031s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.035s] +Searching alignments... [0.029s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.034s] +Building query seed array... [0.046s] +Computing hash join... [0.017s] +Masking low complexity seeds... [0.014s] +Searching alignments... [0.029s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.032s] +Building query seed array... [0.032s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.01s] +Searching alignments... [0.05s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.015s] +Building query seed array... [0.002s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.02s] +Searching alignments... [0.043s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.035s] +Building query seed array... [0.058s] +Computing hash join... [0.02s] +Masking low complexity seeds... [0.018s] +Searching alignments... [0.052s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.038s] +Building query seed array... [0.046s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.016s] +Searching alignments... [0.049s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.036s] +Building query seed array... [0.036s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.022s] +Searching alignments... [0.045s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.041s] +Building query seed array... [0.043s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.041s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.045s] +Building query seed array... [0.051s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.066s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.044s] +Building query seed array... [0.035s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.05s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.039s] +Building query seed array... [0.043s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.041s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.032s] +Building query seed array... [0.044s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.058s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.044s] +Building query seed array... [0.041s] +Computing hash join... [0.021s] +Masking low complexity seeds... [0.026s] +Searching alignments... [0.063s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.043s] +Building query seed array... [0.051s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.049s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.049s] +Building query seed array... [0.046s] +Computing hash join... [0.024s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.058s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.044s] +Building query seed array... [0.051s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.056s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.037s] +Building query seed array... [0.043s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.018s] +Searching alignments... [0.053s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.049s] +Building query seed array... [0.043s] +Computing hash join... [0.026s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.073s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.052s] +Building query seed array... [0.041s] +Computing hash join... [0.025s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.044s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.044s] +Building query seed array... [0.047s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.093s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.04s] +Building query seed array... [0.051s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.04s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.037s] +Building query seed array... [0.05s] +Computing hash join... [0.029s] +Masking low complexity seeds... [0.024s] +Searching alignments... [0.051s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.04s] +Building query seed array... [0.04s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.04s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.056s] +Building query seed array... [0.033s] +Computing hash join... [0.014s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.035s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.039s] +Building query seed array... [0.042s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.024s] +Searching alignments... [0.089s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.04s] +Building query seed array... [0.035s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.036s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.062s] +Building query seed array... [0.047s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.064s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.043s] +Building query seed array... [0.08s] +Computing hash join... [0.043s] +Masking low complexity seeds... [0.022s] +Searching alignments... [0.082s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.045s] +Building query seed array... [0.086s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.11s] +Searching alignments... [0.042s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.029s] +Building query seed array... [0.093s] +Computing hash join... [0.026s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.07s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.086s] +Building query seed array... [0.068s] +Computing hash join... [0.034s] +Masking low complexity seeds... [0.024s] +Searching alignments... [0.1s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.063s] +Building query seed array... [0.083s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.073s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.05s] +Building query seed array... [0.115s] +Computing hash join... [0.035s] +Masking low complexity seeds... [0.016s] +Searching alignments... [0.08s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.066s] +Building query seed array... [0.068s] +Computing hash join... [0.054s] +Masking low complexity seeds... [0.054s] +Searching alignments... [0.073s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] -Deallocating memory... [0s] +Building reference seed array... [0.091s] +Building query seed array... [0.062s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.14s] +Deallocating memory... [0.01s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.075s] +Building query seed array... [0.083s] +Computing hash join... [0.034s] +Masking low complexity seeds... [0.067s] +Searching alignments... [0.036s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.083s] +Building query seed array... [0.027s] +Computing hash join... [0.028s] +Masking low complexity seeds... [0.045s] +Searching alignments... [0.112s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] -Deallocating memory... [0s] +Building reference seed array... [0.07s] +Building query seed array... [0.097s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.103s] +Deallocating memory... [0.007s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.071s] +Building query seed array... [0.043s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.075s] +Searching alignments... [0.043s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.106s] +Building query seed array... [0.044s] +Computing hash join... [0.033s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.092s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.048s] +Building query seed array... [0.091s] +Computing hash join... [0.05s] +Masking low complexity seeds... [0.025s] +Searching alignments... [0.024s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.075s] +Building query seed array... [0.035s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.047s] +Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.039s] +Building query seed array... [0.039s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.035s] +Building query seed array... [0.023s] +Computing hash join... [0.02s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.032s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.023s] +Building query seed array... [0.028s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.016s] +Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.043s] +Building query seed array... [0.035s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.044s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.043s] +Building query seed array... [0.035s] +Computing hash join... [0.02s] +Masking low complexity seeds... [0.025s] +Searching alignments... [0.04s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.039s] +Building query seed array... [0.047s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.026s] +Searching alignments... [0.043s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.035s] +Building query seed array... [0.035s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.035s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.039s] +Building query seed array... [0.031s] +Computing hash join... [0.01s] +Masking low complexity seeds... [0.018s] +Searching alignments... [0.037s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.027s] +Building query seed array... [0.019s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.019s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.103s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.039s] +Building query seed array... [0.039s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.071s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.055s] +Building query seed array... [0.032s] +Computing hash join... [0.038s] +Masking low complexity seeds... [0.02s] +Searching alignments... [0.045s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.041s] +Building query seed array... [0.044s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.051s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.032s] +Building query seed array... [0.027s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.053s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.029s] +Building query seed array... [0.04s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.051s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.039s] +Building query seed array... [0.036s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.047s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.031s] +Building query seed array... [0.047s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.059s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] -Computing alignments... [0.16s] +Computing alignments... [1.306s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] @@ -8912,971 +8948,971 @@ Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] -Total time = 0.674s +Total time = 14.791s Reported 390 pairwise alignments, 390 HSPs. 40 queries aligned. -+ diamond blastp --ignore-warnings --threads 1 --db test/L.faa.diamond --query test/C2.faa --out /tmp/tmp.72ZJtdlCl4/C2.faa.vs.L.faa.diamond -e 1e-05 --outfmt 6 --sensitive ++ diamond blastp --ignore-warnings --threads 1 --db test/L.faa.diamond --query test/C2.faa --out /tmp/tmp.A8efFsAV1o/C2.faa.vs.L.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.11.165 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) -Temporary directory: /tmp/tmp.72ZJtdlCl4 +Temporary directory: /tmp/tmp.A8efFsAV1o #Target sequences to report alignments for: 25 -Opening the database... [0s] +Opening the database... [0.005s] Database: test/L.faa.diamond (type: Diamond database, sequences: 40, letters: 26652) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] -Masking queries... [0s] +Masking queries... [0.054s] Algorithm: Double-indexed -Building query histograms... [0s] +Building query histograms... [0.025s] Seeking in database... [0s] Loading reference sequences... [0s] -Masking reference... [0.001s] -Initializing temporary storage... [0.001s] -Building reference histograms... [0.005s] +Masking reference... [0.025s] +Initializing temporary storage... [0.011s] +Building reference histograms... [0.076s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.043s] +Building query seed array... [0.027s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.047s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.045s] +Building query seed array... [0.035s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.02s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.05s] +Building query seed array... [0.035s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.036s] +Building query seed array... [0.046s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.036s] +Building query seed array... [0.035s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.024s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.043s] +Building query seed array... [0.034s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.038s] +Searching alignments... [0.031s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.046s] +Building query seed array... [0.039s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.029s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.048s] +Building query seed array... [0.033s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.039s] +Building query seed array... [0.042s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.061s] +Building query seed array... [0.052s] +Computing hash join... [0.031s] +Masking low complexity seeds... [0.026s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.039s] +Building query seed array... [0.053s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.038s] +Building query seed array... [0.047s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.04s] +Building query seed array... [0.035s] +Computing hash join... [0.026s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.052s] +Building query seed array... [0.061s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.031s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.037s] +Building query seed array... [0.039s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.044s] +Building query seed array... [0.042s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.05s] +Building query seed array... [0.039s] +Computing hash join... [0.02s] +Masking low complexity seeds... [0.029s] +Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.038s] +Building query seed array... [0.035s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.059s] +Building query seed array... [0.043s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.031s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.041s] +Building query seed array... [0.043s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.04s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.041s] +Building query seed array... [0.039s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.031s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.05s] +Building query seed array... [0.054s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.046s] +Building query seed array... [0.043s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.029s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.043s] +Building query seed array... [0.042s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.014s] +Searching alignments... [0.031s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.041s] +Building query seed array... [0.031s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.031s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.041s] +Building query seed array... [0.043s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.05s] +Building query seed array... [0.03s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.039s] +Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.07s] +Building query seed array... [0.056s] +Computing hash join... [0.042s] +Masking low complexity seeds... [0.043s] +Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.034s] +Building query seed array... [0.031s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] -Deallocating memory... [0s] +Building reference seed array... [0.04s] +Building query seed array... [0.039s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.05s] +Deallocating memory... [0.001s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.071s] +Building query seed array... [0.059s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.031s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.043s] +Building query seed array... [0.051s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.046s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.05s] +Building query seed array... [0.055s] +Computing hash join... [0.026s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.046s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.069s] +Building query seed array... [0.083s] +Computing hash join... [0.035s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.046s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.104s] +Building query seed array... [0.043s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.032s] +Building query seed array... [0.033s] +Computing hash join... [0.017s] +Masking low complexity seeds... [0.018s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.033s] +Building query seed array... [0.043s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.024s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.045s] +Building query seed array... [0.047s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.033s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.044s] +Building query seed array... [0.042s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.035s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.023s] +Building query seed array... [0.039s] +Computing hash join... [0.013s] +Masking low complexity seeds... [0.038s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.098s] +Building query seed array... [0.039s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.034s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.05s] +Building query seed array... [0.042s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.021s] +Searching alignments... [0.035s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.034s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.02s] +Searching alignments... [0.042s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.027s] +Building query seed array... [0.038s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.043s] +Building query seed array... [0.023s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.022s] +Searching alignments... [0.047s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.036s] +Building query seed array... [0.042s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.035s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.039s] +Building query seed array... [0.024s] +Computing hash join... [0.026s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.036s] +Computing hash join... [0.038s] +Masking low complexity seeds... [0.03s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.038s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. -Building reference seed array... [0.001s] +Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0s] +Searching alignments... [0.043s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.051s] +Building query seed array... [0.042s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.048s] +Building query seed array... [0.036s] +Computing hash join... [0.03s] +Masking low complexity seeds... [0.016s] +Searching alignments... [0.046s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.043s] +Building query seed array... [0.028s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.053s] +Building query seed array... [0.035s] +Computing hash join... [0.031s] +Masking low complexity seeds... [0.039s] +Searching alignments... [0.046s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.048s] +Building query seed array... [0.038s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.023s] +Building query seed array... [0.018s] +Computing hash join... [0.051s] +Masking low complexity seeds... [0.048s] +Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.056s] +Building query seed array... [0.047s] +Computing hash join... [0.008s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.055s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.024s] +Building query seed array... [0.023s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.01s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.029s] +Building query seed array... [0.015s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.01s] +Searching alignments... [0.029s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.025s] +Building query seed array... [0.023s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] +Building reference seed array... [0.021s] +Building query seed array... [0.018s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0s] +Searching alignments... [0.042s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.055s] +Building query seed array... [0.023s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.023s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] -Computing alignments... [0.004s] +Computing alignments... [0.088s] Deallocating reference... [0s] Loading reference sequences... [0s] -Deallocating buffers... [0s] +Deallocating buffers... [0.004s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] -Total time = 0.266s +Total time = 10.864s Reported 1 pairwise alignments, 1 HSPs. 1 queries aligned. -+ diamond blastp --threads 1 --db test/C2.faa.diamond --query test/L.faa --out /tmp/tmp.72ZJtdlCl4/L.faa.vs.C2.faa.diamond -e 1e-05 --outfmt 6 --sensitive ++ diamond blastp --threads 1 --db test/C2.faa.diamond --query test/L.faa --out /tmp/tmp.A8efFsAV1o/L.faa.vs.C2.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.11.165 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) -Temporary directory: /tmp/tmp.72ZJtdlCl4 +Temporary directory: /tmp/tmp.A8efFsAV1o #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/C2.faa.diamond (type: Diamond database, sequences: 2, letters: 726) Block size = 2000000000 Opening the input file... [0s] -Opening the output file... [0.002s] -Loading query sequences... [0s] -Masking queries... [0.001s] +Opening the output file... [0s] +Loading query sequences... [0.003s] +Masking queries... [0.055s] Algorithm: Double-indexed -Building query histograms... [0.005s] +Building query histograms... [0.077s] Seeking in database... [0s] Loading reference sequences... [0s] -Masking reference... [0s] -Initializing temporary storage... [0.001s] -Building reference histograms... [0s] +Masking reference... [0.016s] +Initializing temporary storage... [0.01s] +Building reference histograms... [0.06s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.046s] +Building query seed array... [0.04s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.031s] +Building query seed array... [0.046s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.032s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.044s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.033s] +Building query seed array... [0.036s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.034s] +Building query seed array... [0.039s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.046s] +Building query seed array... [0.043s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.051s] +Building query seed array... [0.036s] +Computing hash join... [0.021s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.031s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.05s] +Building query seed array... [0.044s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.045s] +Building query seed array... [0.044s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.02s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.047s] +Building query seed array... [0.04s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.029s] +Building query seed array... [0.047s] +Computing hash join... [0.035s] +Masking low complexity seeds... [0.016s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.067s] +Building query seed array... [0.032s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.042s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.052s] +Building query seed array... [0.044s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.046s] +Building query seed array... [0.032s] +Computing hash join... [0.038s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.053s] +Building query seed array... [0.048s] +Computing hash join... [0.021s] +Masking low complexity seeds... [0.02s] +Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.059s] +Building query seed array... [0.06s] +Computing hash join... [0.014s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.047s] +Building query seed array... [0.032s] +Computing hash join... [0.031s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.04s] +Computing hash join... [0.014s] +Masking low complexity seeds... [0.013s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.029s] +Building query seed array... [0.039s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.032s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.04s] +Building query seed array... [0.032s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.038s] +Building query seed array... [0.044s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.041s] +Building query seed array... [0.044s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.026s] +Building query seed array... [0.03s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.025s] +Building query seed array... [0.023s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.025s] +Building query seed array... [0.051s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.029s] +Building query seed array... [0.027s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.056s] +Building query seed array... [0.035s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.028s] +Building query seed array... [0.032s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.025s] +Building query seed array... [0.027s] +Computing hash join... [0.039s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.029s] +Building query seed array... [0.035s] +Computing hash join... [0.035s] +Masking low complexity seeds... [0.02s] +Searching alignments... [0.033s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.045s] +Building query seed array... [0.04s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.041s] +Building query seed array... [0.047s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.033s] +Building query seed array... [0.079s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.031s] +Building query seed array... [0.027s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.011s] +Building query seed array... [0.035s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.023s] +Building query seed array... [0.023s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.043s] +Building query seed array... [0.019s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.027s] +Building query seed array... [0.027s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.035s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.031s] +Building query seed array... [0.027s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.012s] +Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.031s] +Building query seed array... [0.039s] +Computing hash join... [0.017s] +Masking low complexity seeds... [0.013s] +Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.039s] +Building query seed array... [0.035s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.044s] +Building query seed array... [0.046s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.039s] +Building query seed array... [0.043s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.043s] +Building query seed array... [0.047s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.051s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.029s] +Computing hash join... [0.034s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.032s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.053s] +Building query seed array... [0.04s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.025s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.052s] +Building query seed array... [0.048s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.018s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.034s] +Building query seed array... [0.045s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.018s] +Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.045s] +Building query seed array... [0.04s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.034s] +Searching alignments... [0.035s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.068s] +Building query seed array... [0.048s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.049s] +Building query seed array... [0.05s] +Computing hash join... [0.024s] +Masking low complexity seeds... [0.035s] +Searching alignments... [0.039s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.065s] +Building query seed array... [0.052s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.045s] +Building query seed array... [0.059s] +Computing hash join... [0.031s] +Masking low complexity seeds... [0.035s] +Searching alignments... [0.043s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.041s] +Building query seed array... [0.059s] +Computing hash join... [0.035s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.061s] +Building query seed array... [0.059s] +Computing hash join... [0.051s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.038s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.041s] +Building query seed array... [0.024s] +Computing hash join... [0.014s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.039s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.041s] +Building query seed array... [0.055s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building query seed array... [0.025s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.014s] +Searching alignments... [0.038s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.029s] +Computing hash join... [0.006s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.031s] +Building query seed array... [0.023s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.038s] +Building query seed array... [0.035s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.018s] +Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.032s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.02s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] -Computing alignments... [0.002s] +Computing alignments... [0.067s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] @@ -9886,17 +9922,17 @@ Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] -Total time = 0.263s +Total time = 10.164s Reported 1 pairwise alignments, 1 HSPs. 1 queries aligned. -+ diamond blastp --ignore-warnings --threads 1 --db test/M.faa.diamond --query test/C2.faa --out /tmp/tmp.72ZJtdlCl4/C2.faa.vs.M.faa.diamond -e 1e-05 --outfmt 6 --sensitive ++ diamond blastp --ignore-warnings --threads 1 --db test/M.faa.diamond --query test/C2.faa --out /tmp/tmp.A8efFsAV1o/C2.faa.vs.M.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.11.165 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) -Temporary directory: /tmp/tmp.72ZJtdlCl4 +Temporary directory: /tmp/tmp.A8efFsAV1o #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/M.faa.diamond (type: Diamond database, sequences: 40, letters: 26963) @@ -9904,953 +9940,953 @@ Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] -Masking queries... [0s] +Masking queries... [0.031s] Algorithm: Double-indexed -Building query histograms... [0s] +Building query histograms... [0.037s] Seeking in database... [0s] Loading reference sequences... [0s] -Masking reference... [0.001s] -Initializing temporary storage... [0s] -Building reference histograms... [0.005s] +Masking reference... [0.013s] +Initializing temporary storage... [0.011s] +Building reference histograms... [0.077s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.044s] +Building query seed array... [0.027s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.008s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.024s] +Building query seed array... [0.03s] +Computing hash join... [0.013s] +Masking low complexity seeds... [0.017s] +Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.037s] +Building query seed array... [0.031s] +Computing hash join... [0.014s] +Masking low complexity seeds... [0.02s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.052s] +Building query seed array... [0.034s] +Computing hash join... [0.02s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.032s] +Building query seed array... [0.026s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.027s] +Building query seed array... [0.034s] +Computing hash join... [0.013s] +Masking low complexity seeds... [0.01s] +Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.031s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.037s] +Building query seed array... [0.027s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.033s] +Building query seed array... [0.032s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.04s] +Building query seed array... [0.042s] +Computing hash join... [0.024s] +Masking low complexity seeds... [0.026s] +Searching alignments... [0.024s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.034s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.047s] +Building query seed array... [0.043s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.046s] +Building query seed array... [0.038s] +Computing hash join... [0.021s] +Masking low complexity seeds... [0.017s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.027s] +Computing hash join... [0.02s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.033s] +Building query seed array... [0.035s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.038s] +Building query seed array... [0.038s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.038s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.034s] +Building query seed array... [0.038s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.049s] +Building query seed array... [0.039s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.032s] +Building query seed array... [0.034s] +Computing hash join... [0.009s] +Masking low complexity seeds... [0.025s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.052s] +Building query seed array... [0.033s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.016s] +Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.036s] +Building query seed array... [0.038s] +Computing hash join... [0.017s] +Masking low complexity seeds... [0.026s] +Searching alignments... [0.031s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.052s] +Building query seed array... [0.043s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.035s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.022s] +Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.027s] +Building query seed array... [0.038s] +Computing hash join... [0.014s] +Masking low complexity seeds... [0.02s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.053s] +Building query seed array... [0.069s] +Computing hash join... [0.033s] +Masking low complexity seeds... [0.026s] +Searching alignments... [0.035s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.073s] +Building query seed array... [0.032s] +Computing hash join... [0.034s] +Masking low complexity seeds... [0.038s] +Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.045s] +Building query seed array... [0.071s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.033s] +Searching alignments... [0.036s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.049s] +Building query seed array... [0.063s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.033s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.053s] +Building query seed array... [0.074s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.035s] +Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.066s] +Building query seed array... [0.007s] +Computing hash join... [0.033s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.042s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.069s] +Building query seed array... [0.008s] +Computing hash join... [0.03s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.049s] +Building query seed array... [0.024s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.046s] +Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.028s] +Building query seed array... [0.035s] +Computing hash join... [0.031s] +Masking low complexity seeds... [0.003s] +Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.044s] +Building query seed array... [0.034s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.004s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.026s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.035s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.043s] +Building query seed array... [0.038s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.047s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.047s] +Building query seed array... [0.042s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.044s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.036s] +Building query seed array... [0.054s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.038s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.045s] +Building query seed array... [0.043s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.044s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.055s] +Building query seed array... [0.043s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.038s] +Building query seed array... [0.031s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.046s] +Building query seed array... [0.038s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.043s] +Building query seed array... [0.043s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.039s] +Building query seed array... [0.031s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.033s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.038s] +Building query seed array... [0.034s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.034s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.03s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.059s] +Building query seed array... [0.034s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.046s] +Building query seed array... [0.055s] +Computing hash join... [0.051s] +Masking low complexity seeds... [0.059s] +Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.044s] +Building query seed array... [0.035s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.039s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.055s] +Building query seed array... [0.031s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.047s] +Searching alignments... [0.055s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.051s] +Building query seed array... [0.039s] +Computing hash join... [0.039s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.075s] +Building query seed array... [0.031s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.039s] +Searching alignments... [0.051s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.092s] +Building query seed array... [0.082s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.018s] +Searching alignments... [0.038s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.063s] +Building query seed array... [0.043s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.029s] +Building query seed array... [0.027s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.025s] +Building query seed array... [0.031s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.014s] +Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.029s] +Building query seed array... [0.031s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.033s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.025s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.033s] +Computing hash join... [0.017s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.033s] +Building query seed array... [0.05s] +Computing hash join... [0.017s] +Masking low complexity seeds... [0.018s] +Searching alignments... [0.03s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] -Computing alignments... [0.004s] +Computing alignments... [0.064s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] -Closing the output file... [0s] +Closing the output file... [0.004s] Closing the database... [0s] Cleaning up... [0s] -Total time = 0.261s +Total time = 10.485s Reported 1 pairwise alignments, 1 HSPs. 1 queries aligned. -+ diamond blastp --threads 1 --db test/C2.faa.diamond --query test/M.faa --out /tmp/tmp.72ZJtdlCl4/M.faa.vs.C2.faa.diamond -e 1e-05 --outfmt 6 --sensitive ++ diamond blastp --threads 1 --db test/C2.faa.diamond --query test/M.faa --out /tmp/tmp.A8efFsAV1o/M.faa.vs.C2.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.11.165 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) -Temporary directory: /tmp/tmp.72ZJtdlCl4 +Temporary directory: /tmp/tmp.A8efFsAV1o #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/C2.faa.diamond (type: Diamond database, sequences: 2, letters: 726) Block size = 2000000000 Opening the input file... [0s] -Opening the output file... [0s] +Opening the output file... [0.006s] Loading query sequences... [0s] -Masking queries... [0.001s] +Masking queries... [0.026s] Algorithm: Double-indexed -Building query histograms... [0.005s] +Building query histograms... [0.056s] Seeking in database... [0s] Loading reference sequences... [0s] -Masking reference... [0s] -Initializing temporary storage... [0s] -Building reference histograms... [0s] +Masking reference... [0.012s] +Initializing temporary storage... [0.007s] +Building reference histograms... [0.027s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.043s] +Building query seed array... [0.035s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.066s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.029s] +Building query seed array... [0.031s] +Computing hash join... [0.04s] +Masking low complexity seeds... [0.051s] +Searching alignments... [0.053s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.096s] +Building query seed array... [0.095s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.013s] +Searching alignments... [0.024s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.069s] +Building query seed array... [0.036s] +Computing hash join... [0.017s] +Masking low complexity seeds... [0.017s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.033s] +Building query seed array... [0.026s] +Computing hash join... [0.035s] +Masking low complexity seeds... [0.016s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.117s] +Building query seed array... [0.019s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.039s] +Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.021s] +Building query seed array... [0.031s] +Computing hash join... [0.083s] +Masking low complexity seeds... [0.035s] +Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.017s] +Building query seed array... [0.019s] +Computing hash join... [0.005s] +Masking low complexity seeds... [0.013s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.044s] +Building query seed array... [0.072s] +Computing hash join... [0.035s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.025s] +Building query seed array... [0.023s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.069s] +Building query seed array... [0.027s] +Computing hash join... [0.031s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.054s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.021s] +Building query seed array... [0.035s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.029s] +Building query seed array... [0.023s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.032s] +Building query seed array... [0.062s] +Computing hash join... [0.024s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.046s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.046s] +Building query seed array... [0.054s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.033s] +Building query seed array... [0.052s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.035s] +Searching alignments... [0.036s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.071s] +Building query seed array... [0.044s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.081s] +Building query seed array... [0.041s] +Computing hash join... [0.037s] +Masking low complexity seeds... [0.039s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.085s] +Building query seed array... [0.044s] +Computing hash join... [0.013s] +Masking low complexity seeds... [0.034s] +Searching alignments... [0.047s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.04s] +Building query seed array... [0.039s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.038s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.062s] +Building query seed array... [0.018s] +Computing hash join... [0.035s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.045s] +Building query seed array... [0.039s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.01s] +Searching alignments... [0.054s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.066s] +Building query seed array... [0.055s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.025s] +Building query seed array... [0.027s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.051s] +Building query seed array... [0.036s] +Computing hash join... [0.026s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.049s] +Building query seed array... [0.047s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.065s] +Building query seed array... [0.055s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.039s] +Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.059s] +Building query seed array... [0.051s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.031s] +Searching alignments... [0.034s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.069s] +Building query seed array... [0.028s] +Computing hash join... [0.034s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.042s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.048s] +Building query seed array... [0.053s] +Computing hash join... [0.026s] +Masking low complexity seeds... [0.035s] +Searching alignments... [0.038s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.041s] +Building query seed array... [0.032s] +Computing hash join... [0.021s] +Masking low complexity seeds... [0.032s] +Searching alignments... [0.058s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.071s] +Building query seed array... [0.071s] +Computing hash join... [0.031s] +Masking low complexity seeds... [0.008s] +Searching alignments... [0.051s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.036s] +Building query seed array... [0.053s] +Computing hash join... [0.035s] +Masking low complexity seeds... [0.012s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] +Building reference seed array... [0.034s] +Building query seed array... [0.017s] Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Masking low complexity seeds... [0.025s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.039s] +Building query seed array... [0.035s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.039s] +Building query seed array... [0.047s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.047s] +Building query seed array... [0.035s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.017s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.066s] +Building query seed array... [0.028s] +Computing hash join... [0.017s] +Masking low complexity seeds... [0.017s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.054s] +Building query seed array... [0.052s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.031s] +Building query seed array... [0.046s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.036s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.038s] +Building query seed array... [0.043s] +Computing hash join... [0.031s] +Masking low complexity seeds... [0.034s] +Searching alignments... [0.036s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.037s] +Building query seed array... [0.044s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.037s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.042s] +Building query seed array... [0.033s] +Computing hash join... [0.026s] +Masking low complexity seeds... [0.035s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.044s] +Building query seed array... [0.04s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.037s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.048s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.035s] +Searching alignments... [0.043s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.045s] +Building query seed array... [0.026s] +Computing hash join... [0.026s] +Masking low complexity seeds... [0.03s] +Searching alignments... [0.036s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.043s] +Building query seed array... [0.037s] +Computing hash join... [0.009s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.036s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.033s] +Building query seed array... [0.036s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.034s] +Building query seed array... [0.052s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.022s] +Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.04s] +Building query seed array... [0.044s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.022s] +Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.038s] +Building query seed array... [0.041s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.036s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.045s] +Building query seed array... [0.04s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.01s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.044s] +Building query seed array... [0.037s] +Computing hash join... [0.026s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.027s] +Building query seed array... [0.028s] +Computing hash join... [0.034s] +Masking low complexity seeds... [0.024s] +Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.038s] +Building query seed array... [0.032s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.016s] +Searching alignments... [0.035s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.037s] +Building query seed array... [0.04s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.028s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.046s] +Building query seed array... [0.039s] +Computing hash join... [0.02s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.036s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.049s] +Building query seed array... [0.04s] +Computing hash join... [0.022s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.038s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.047s] +Building query seed array... [0.043s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.031s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.039s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.031s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.038s] +Building query seed array... [0.047s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.03s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.033s] +Building query seed array... [0.043s] +Computing hash join... [0.031s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.03s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] -Computing alignments... [0.002s] +Computing alignments... [0.086s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] @@ -10860,15 +10896,15 @@ Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] -Total time = 0.255s +Total time = 11.211s Reported 1 pairwise alignments, 1 HSPs. 1 queries aligned. -+ rm -rf /tmp/tmp.72ZJtdlCl4 ++ rm -rf /tmp/tmp.A8efFsAV1o make[1]: Leaving directory '/build/reproducible-path/diamond-aligner-2.1.11' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/diamond-aligner/ - cd obj-x86_64-linux-gnu && make -j42 install DESTDIR=/build/reproducible-path/diamond-aligner-2.1.11/debian/diamond-aligner AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd obj-x86_64-linux-gnu && make -j20 install DESTDIR=/build/reproducible-path/diamond-aligner-2.1.11/debian/diamond-aligner AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/diamond-aligner-2.1.11/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/diamond-aligner-2.1.11 -B/build/reproducible-path/diamond-aligner-2.1.11/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -10900,8 +10936,8 @@ dh_gencontrol dh_md5sums dh_builddeb -dpkg-deb: building package 'diamond-aligner' in '../diamond-aligner_2.1.11-2_amd64.deb'. dpkg-deb: building package 'diamond-aligner-dbgsym' in '../diamond-aligner-dbgsym_2.1.11-2_amd64.deb'. +dpkg-deb: building package 'diamond-aligner' in '../diamond-aligner_2.1.11-2_amd64.deb'. dpkg-genbuildinfo --build=binary -O../diamond-aligner_2.1.11-2_amd64.buildinfo dpkg-genchanges --build=binary -O../diamond-aligner_2.1.11-2_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -10909,12 +10945,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/953146/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/953146/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/1134213 and its subdirectories -I: Current time: Sun Apr 12 17:16:56 -12 2026 -I: pbuilder-time-stamp: 1776057416 +I: removing directory /srv/workspace/pbuilder/953146 and its subdirectories +I: Current time: Tue Mar 11 13:45:12 +14 2025 +I: pbuilder-time-stamp: 1741650312 Compressing the 2nd log... /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/diamond-aligner_2.1.11-2.diff: 94.7% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/diamond-aligner_2.1.11-2.diff.gz b2/build.log: 94.4% -- replaced with stdout Compressing the 1st log... b1/build.log: 96.1% -- replaced with stdout Mon Mar 10 23:45:17 UTC 2025 I: diffoscope 289 will be used to compare the two builds: ++ date -u +%s + DIFFOSCOPE_STAMP=/var/log/reproducible-builds/diffoscope_stamp_diamond-aligner_unstable_amd64_1741650317 + touch /var/log/reproducible-builds/diffoscope_stamp_diamond-aligner_unstable_amd64_1741650317 + RESULT=0 + systemd-run '--description=diffoscope on diamond-aligner/2.1.11-2 in unstable/amd64' --slice=rb-build-diffoscope.slice -u rb-diffoscope-amd64_4-47405 '--property=SuccessExitStatus=1 124' --user --send-sighup --pipe --wait -E TMPDIR timeout 155m nice schroot --directory /srv/reproducible-results/rbuild-debian/r-b-build.PH0nphoP --run-session -c jenkins-reproducible-unstable-diffoscope-464ad0ae-b004-4c76-948f-a7d6f4399e3a -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian/r-b-build.PH0nphoP/dbd-tmp-dv1jbdn ; timeout 150m diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.PH0nphoP/diamond-aligner_2.1.11-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.PH0nphoP/diamond-aligner_2.1.11-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.PH0nphoP/diamond-aligner_2.1.11-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.PH0nphoP/b1/diamond-aligner_2.1.11-2_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.PH0nphoP/b2/diamond-aligner_2.1.11-2_amd64.changes' + false + set +x Running as unit: rb-diffoscope-amd64_4-47405.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.PH0nphoP/diamond-aligner_2.1.11-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.PH0nphoP/diamond-aligner_2.1.11-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.PH0nphoP/diamond-aligner_2.1.11-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.PH0nphoP/b1/diamond-aligner_2.1.11-2_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.PH0nphoP/b2/diamond-aligner_2.1.11-2_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.004s) 0.004s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 246ms CPU time consumed: 243ms _ _ _ _ _ __| (_) __ _ _ __ ___ ___ _ __ __| | __ _| (_) __ _ _ __ ___ / _` | |/ _` | '_ ` _ \ / _ \| '_ \ / _` |_____ / _` | | |/ _` | '_ \ / _ \ | (_| | | (_| | | | | | | (_) | | | | (_| |_____| (_| | | | (_| | | | | __/ \__,_|_|\__,_|_| |_| |_|\___/|_| |_|\__,_| \__,_|_|_|\__, |_| |_|\___| |___/ _ __ | '__| | | |_| Mon Mar 10 23:45:21 UTC 2025 I: diffoscope 289 found no differences in the changes files, and a .buildinfo file also exists. Mon Mar 10 23:45:21 UTC 2025 I: diamond-aligner from unstable built successfully and reproducibly on amd64. INSERT 0 1 INSERT 0 1 DELETE 1 [2025-03-10 23:45:21] INFO: Starting at 2025-03-10 23:45:21.810875 [2025-03-10 23:45:21] INFO: Generating the pages of 1 package(s) [2025-03-10 23:45:22] CRITICAL: https://tests.reproducible-builds.org/debian/unstable/amd64/diamond-aligner didn't produce a buildlog, even though it has been built. [2025-03-10 23:45:22] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/armhf/diamond-aligner_2.1.9-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/armhf/diamond-aligner_2.1.9-2.diff.gz is missing [2025-03-10 23:45:22] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/i386/diamond-aligner_2.1.11-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/i386/diamond-aligner_2.1.11-2.diff.gz is missing [2025-03-10 23:45:22] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/armhf/diamond-aligner_2.1.9-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/armhf/diamond-aligner_2.1.9-1.diff.gz is missing [2025-03-10 23:45:22] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/i386/diamond-aligner_2.1.9-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/i386/diamond-aligner_2.1.9-2.diff.gz is missing [2025-03-10 23:45:22] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/armhf/diamond-aligner_2.1.3-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/armhf/diamond-aligner_2.1.3-1.diff.gz is missing [2025-03-10 23:45:22] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/i386/diamond-aligner_2.1.3-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/i386/diamond-aligner_2.1.3-1.diff.gz is missing [2025-03-10 23:45:22] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/armhf/diamond-aligner_2.0.7-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/armhf/diamond-aligner_2.0.7-1.diff.gz is missing [2025-03-10 23:45:22] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/i386/diamond-aligner_2.0.7-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/i386/diamond-aligner_2.0.7-1.diff.gz is missing [2025-03-10 23:45:22] INFO: Finished at 2025-03-10 23:45:22.782505, took: 0:00:00.971641 Mon Mar 10 23:45:22 UTC 2025 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/unstable/amd64/diamond-aligner.html Mon Mar 10 23:45:22 UTC 2025 I: Submitting .buildinfo files to external archives: Mon Mar 10 23:45:22 UTC 2025 I: Submitting 8.0K b1/diamond-aligner_2.1.11-2_amd64.buildinfo.asc https://buildinfo.debian.net/840df3cb1182dab030482cb02ed5bb0bf70866d3/diamond-aligner_2.1.11-2_amd64 Mon Mar 10 23:45:24 UTC 2025 I: Submitting 8.0K b2/diamond-aligner_2.1.11-2_amd64.buildinfo.asc https://buildinfo.debian.net/cdd4e120d0b4b1709ed2e32bd7a02d7250808032/diamond-aligner_2.1.11-2_amd64 Mon Mar 10 23:45:27 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Mon Mar 10 23:45:27 UTC 2025 I: Done submitting .buildinfo files. Mon Mar 10 23:45:27 UTC 2025 I: Removing signed diamond-aligner_2.1.11-2_amd64.buildinfo.asc files: removed './b1/diamond-aligner_2.1.11-2_amd64.buildinfo.asc' removed './b2/diamond-aligner_2.1.11-2_amd64.buildinfo.asc' 1741650327 amd64 unstable diamond-aligner Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/diamond-aligner_2.1.11-2.rbuild.log: 95.6% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/diamond-aligner_2.1.11-2.rbuild.log.gz [2025-03-10 23:45:27] INFO: Starting at 2025-03-10 23:45:27.597686 [2025-03-10 23:45:27] INFO: Generating the pages of 1 package(s) [2025-03-10 23:45:27] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/armhf/diamond-aligner_2.1.9-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/armhf/diamond-aligner_2.1.9-2.diff.gz is missing [2025-03-10 23:45:27] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/i386/diamond-aligner_2.1.11-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/i386/diamond-aligner_2.1.11-2.diff.gz is missing [2025-03-10 23:45:27] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/armhf/diamond-aligner_2.1.9-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/armhf/diamond-aligner_2.1.9-1.diff.gz is missing [2025-03-10 23:45:27] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/i386/diamond-aligner_2.1.9-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/i386/diamond-aligner_2.1.9-2.diff.gz is missing [2025-03-10 23:45:27] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/armhf/diamond-aligner_2.1.3-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/armhf/diamond-aligner_2.1.3-1.diff.gz is missing [2025-03-10 23:45:28] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/i386/diamond-aligner_2.1.3-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/i386/diamond-aligner_2.1.3-1.diff.gz is missing [2025-03-10 23:45:28] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/armhf/diamond-aligner_2.0.7-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/armhf/diamond-aligner_2.0.7-1.diff.gz is missing [2025-03-10 23:45:28] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/i386/diamond-aligner_2.0.7-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/i386/diamond-aligner_2.0.7-1.diff.gz is missing [2025-03-10 23:45:28] INFO: Finished at 2025-03-10 23:45:28.053405, took: 0:00:00.455724 All cleanup done. Mon Mar 10 23:45:28 UTC 2025 - total duration: 0h 54m 56s. Mon Mar 10 23:45:28 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-e24HkFnp, removing. Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 55min 2.494s CPU time consumed: 11.477s