Running as unit: rb-build-amd64_4-55722.service ==================================================================================== Fri Jun 6 11:01:09 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_amd64_4) on jenkins, called using "ionos15-amd64 ionos1-amd64" as arguments. Fri Jun 6 11:01:09 UTC 2025 - actually running "reproducible_build.sh" (md5sum 44ec6a3142940d5e9a7ab76543d96029) as "/tmp/jenkins-script-KRxUo4Lg" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Fri Jun 6 11:01:09 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos15-amd64.debian.net is marked as down. Fri Jun 6 11:01:09 UTC 2025 - checking via ssh if ionos15-amd64.debian.net is up. removed '/tmp/read-only-fs-test-m8akaw' Fri Jun 6 11:01:11 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos1-amd64.debian.net is marked as down. Fri Jun 6 11:01:11 UTC 2025 - checking via ssh if ionos1-amd64.debian.net is up. removed '/tmp/read-only-fs-test-zwqiT5' ok, let's check if metastudent-data is building anywhere yet… ok, metastudent-data is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of metastudent-data in unstable on amd64 on jenkins now. 1st build will be done on ionos15-amd64.debian.net. 2nd build will be done on ionos1-amd64.debian.net. ============================================================================= Fri Jun 6 11:01:31 UTC 2025 I: starting to build metastudent-data/unstable/amd64 on jenkins on '2025-06-06 11:01' Fri Jun 6 11:01:31 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_4/55722/console.log 1749207691 amd64 unstable metastudent-data Fri Jun 6 11:01:31 UTC 2025 I: Downloading source for unstable/metastudent-data=2.0.1-8 --2025-06-06 11:01:31-- http://deb.debian.org/debian/pool/main/m/metastudent-data/metastudent-data_2.0.1-8.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2136 (2.1K) [text/prs.lines.tag] Saving to: ‘metastudent-data_2.0.1-8.dsc’ 0K .. 100% 249M=0s 2025-06-06 11:01:31 (249 MB/s) - ‘metastudent-data_2.0.1-8.dsc’ saved [2136/2136] --2025-06-06 11:01:31-- http://deb.debian.org/debian/pool/main/m/metastudent-data/metastudent-data_2.0.1-8.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2136 (2.1K) [text/prs.lines.tag] Saving to: ‘metastudent-data_2.0.1-8.dsc’ 0K .. 100% 249M=0s 2025-06-06 11:01:31 (249 MB/s) - ‘metastudent-data_2.0.1-8.dsc’ saved [2136/2136] Fri Jun 6 11:01:31 UTC 2025 I: metastudent-data_2.0.1-8.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: metastudent-data Binary: metastudent-data Architecture: all Version: 2.0.1-8 Maintainer: Debian Med Packaging Team Uploaders: Tobias Hamp , Laszlo Kajan Homepage: https://rostlab.org/owiki/index.php/Metastudent Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/metastudent-data Vcs-Git: https://salsa.debian.org/med-team/metastudent-data.git Build-Depends: debhelper-compat (= 13) Build-Depends-Indep: ncbi-blast+-legacy | blast2, rsync Package-List: metastudent-data deb science optional arch=all Checksums-Sha1: 69e4fe22d32f87a3dc5da934252b693a91b0c999 152941188 metastudent-data_2.0.1.orig.tar.xz 349c672936c7c43399ac40db53335f6f45b75032 5444 metastudent-data_2.0.1-8.debian.tar.xz Checksums-Sha256: 8bec8a080711cba270256fdbc1035961a63ba0b5af3f6f75f67741e9b53a34e7 152941188 metastudent-data_2.0.1.orig.tar.xz a5fc40b447fd232e02437fb906c4edd1e4c82d30e1564f1f1356bf3054896f4e 5444 metastudent-data_2.0.1-8.debian.tar.xz Files: 981f92b555b8e2846423dd9c0a616ce5 152941188 metastudent-data_2.0.1.orig.tar.xz 271c755735951328425fcbb25f24a362 5444 metastudent-data_2.0.1-8.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmHpLH8RHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtHlPA//cKrZ6u0gBLvCe9CBPuQX/qOcaIp6HPj4 bQWPSo0qJhJfIi60ZdnEPCEZmoTcs1oOfHFM+bHzb6wkT+1D1eCk+4D3tcaVfqop yZqfSm+T7dNNI3hiKDRsGVKmKzo241zGsNeZn2mbmHNbzuqmhUSUPWRAnQmcbW8S NRL2gT4wz4cmJSK/NVJUHjQBunOEgt32msHPgC40HNmVW+vJ/qenFb7U8TcYxSaV MRrhboI5L8liMaH2c8F5+WkLqQRMqny3ffy1UnwqWPwLi8OmLXM1TwsBkNVC0N0T gltPOKFmWR+0Kq/SFLueesdwM1c2OZWCLVO5DNba88Aq23THWuxatzc87xwsazKH kJIz+B+pyez+Y9e+Y6dKJWInoaJ64z8nIF0i1YfB1Vx838YoMBCBQ2wzP3o5s3qb 44Fzmunm1YcleNmDRJpzV92DUL/nPIbgYOpYbr3c1aFNqotr1iEb3KBsebA7jKQ2 RgkZYjDfANaIiFntMIZhTKcAox1T5+0XsQrCcFmjO0r4MNDwaQgD0Q1ieq7dat7p lJmOvbV9PVs23yshCQPAua5PKeIoyimoS5EKEUzD9Y0pyMeTKYDoQPicwpcTTjrz XTnm5Ua0MTPxAalRr947rm8pCvILze6M7GAu78TxcxpPEaJpAldnsytPZJ79slHB q319yl1MyT8= =9SXt -----END PGP SIGNATURE----- Fri Jun 6 11:01:31 UTC 2025 I: Checking whether the package is not for us Fri Jun 6 11:01:31 UTC 2025 I: Starting 1st build on remote node ionos15-amd64.debian.net. Fri Jun 6 11:01:31 UTC 2025 I: Preparing to do remote build '1' on ionos15-amd64.debian.net. Fri Jun 6 11:01:31 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos15-amd64.debian.net is marked as down. Fri Jun 6 11:01:31 UTC 2025 - checking via ssh if ionos15-amd64.debian.net is up. removed '/tmp/read-only-fs-test-sve1YA' ==================================================================================== Thu Jul 9 17:24:35 UTC 2026 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos15-amd64, called using "1 metastudent-data unstable /srv/reproducible-results/rbuild-debian/r-b-build.jNHDRA7Q 2.0.1-8" as arguments. Thu Jul 9 17:24:35 UTC 2026 - actually running "reproducible_build.sh" (md5sum 44ec6a3142940d5e9a7ab76543d96029) as "/tmp/jenkins-script-BooVh3qJ" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Thu Jul 9 17:24:35 UTC 2026 I: Downloading source for unstable/metastudent-data=2.0.1-8 Reading package lists... NOTICE: 'metastudent-data' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/metastudent-data.git Please use: git clone https://salsa.debian.org/med-team/metastudent-data.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 153 MB of source archives. Get:1 http://deb.debian.org/debian unstable/main metastudent-data 2.0.1-8 (dsc) [2136 B] Get:2 http://deb.debian.org/debian unstable/main metastudent-data 2.0.1-8 (tar) [153 MB] Get:3 http://deb.debian.org/debian unstable/main metastudent-data 2.0.1-8 (diff) [5444 B] Fetched 153 MB in 10s (15.1 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'metastudent-data' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/metastudent-data.git Please use: git clone https://salsa.debian.org/med-team/metastudent-data.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 153 MB of source archives. Get:1 http://deb.debian.org/debian unstable/main metastudent-data 2.0.1-8 (dsc) [2136 B] Get:2 http://deb.debian.org/debian unstable/main metastudent-data 2.0.1-8 (tar) [153 MB] Get:3 http://deb.debian.org/debian unstable/main metastudent-data 2.0.1-8 (diff) [5444 B] Fetched 153 MB in 10s (15.1 MB/s) Download complete and in download only mode ============================================================================= Building metastudent-data in unstable on amd64 on ionos15-amd64 now. Date: Thu Jul 9 17:24:46 UTC 2026 Date UTC: Thu Jul 9 17:24:46 UTC 2026 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Thu Jul 9 05:24:46 -12 2026 I: pbuilder-time-stamp: 1783617886 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [metastudent-data_2.0.1-8.dsc] I: copying [./metastudent-data_2.0.1.orig.tar.xz] I: copying [./metastudent-data_2.0.1-8.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./metastudent-data_2.0.1-8.dsc: no acceptable signature found dpkg-source: info: extracting metastudent-data in metastudent-data-2.0.1 dpkg-source: info: unpacking metastudent-data_2.0.1.orig.tar.xz dpkg-source: info: unpacking metastudent-data_2.0.1-8.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 01_formatdb_fix_prot_dbtype.patch dpkg-source: info: applying use_blastdb_format_4.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1787077/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='bc0acd0c7f3748d99b06896646b16a9f' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1787077' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.jNHDRA7Q/pbuilderrc_9aJ1 --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.jNHDRA7Q/b1 --logfile b1/build.log metastudent-data_2.0.1-8.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos15-amd64 6.12.22+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.22-1~bpo12+1 (2025-04-25) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 12 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1787077/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), ncbi-blast+-legacy | blast2, rsync dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19850 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on ncbi-blast+-legacy | blast2; however: Package ncbi-blast+-legacy is not installed. Package blast2 is not installed. pbuilder-satisfydepends-dummy depends on rsync; however: Package rsync is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} liblmdb0{a} libmagic-mgc{a} libmagic1t64{a} libmbedcrypto16{a} libmbedtls21{a} libmbedx509-7{a} libncbi-vdb3{a} libnghttp2-14{a} libpipeline1{a} libpopt0{a} libpython3-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libxml2{a} m4{a} man-db{a} media-types{a} ncbi-blast+{a} ncbi-blast+-legacy{a} ncbi-data{a} ncbi-vdb-data{a} netbase{a} po-debconf{a} python3{a} python3-minimal{a} python3.13{a} python3.13-minimal{a} readline-common{a} rsync{a} sensible-utils{a} tzdata{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 56 newly installed, 0 to remove and 0 not upgraded. Need to get 40.0 MB of archives. After unpacking 173 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 libpython3.13-minimal amd64 3.13.4-1 [862 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.7.1-1 [108 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 python3.13-minimal amd64 3.13.4-1 [2218 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 python3-minimal amd64 3.13.4-1 [27.3 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 media-types all 13.0.0 [29.3 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 netbase all 6.5 [12.4 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 tzdata all 2025b-3 [260 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 libffi8 amd64 3.4.8-2 [24.1 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 readline-common all 8.2-6 [69.4 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 libreadline8t64 amd64 8.2-6 [169 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 libpython3.13-stdlib amd64 3.13.4-1 [1958 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 python3.13 amd64 3.13.4-1 [756 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 libpython3-stdlib amd64 3.13.4-1 [10.2 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 python3 amd64 3.13.4-1 [28.3 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 libpopt0 amd64 1.19+dfsg-2 [43.8 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 rsync amd64 3.4.1+ds1-3 [428 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.25 [25.0 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.1-2 [243 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.41-5 [94.6 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-8 [294 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.17-4 [862 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.24.2 [90.9 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-4 [539 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 38 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 41 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-1 [698 kB] Get: 42 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.1-2 [1680 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.24.2 [919 kB] Get: 46 http://deb.debian.org/debian unstable/main amd64 liblmdb0 amd64 0.9.31-1+b2 [45.2 kB] Get: 47 http://deb.debian.org/debian unstable/main amd64 libmbedcrypto16 amd64 3.6.3-1 [357 kB] Get: 48 http://deb.debian.org/debian unstable/main amd64 libmbedx509-7 amd64 3.6.3-1 [149 kB] Get: 49 http://deb.debian.org/debian unstable/main amd64 libmbedtls21 amd64 3.6.3-1 [236 kB] Get: 50 http://deb.debian.org/debian unstable/main amd64 ncbi-vdb-data all 3.2.1+dfsg-2 [88.5 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 libncbi-vdb3 amd64 3.2.1+dfsg-2 [1164 kB] Get: 52 http://deb.debian.org/debian unstable/main amd64 libnghttp2-14 amd64 1.64.0-1.1 [76.0 kB] Get: 53 http://deb.debian.org/debian unstable/main amd64 libuv1t64 amd64 1.50.0-2 [154 kB] Get: 54 http://deb.debian.org/debian unstable/main amd64 ncbi-data all 6.1.20170106+dfsg2-6 [3541 kB] Get: 55 http://deb.debian.org/debian unstable/main amd64 ncbi-blast+ amd64 2.16.0+ds-7 [16.0 MB] Get: 56 http://deb.debian.org/debian unstable/main amd64 ncbi-blast+-legacy all 2.16.0+ds-7 [12.6 kB] Fetched 40.0 MB in 1s (44.4 MB/s) Preconfiguring packages ... Selecting previously unselected package libpython3.13-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19850 files and directories currently installed.) Preparing to unpack .../libpython3.13-minimal_3.13.4-1_amd64.deb ... Unpacking libpython3.13-minimal:amd64 (3.13.4-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.7.1-1_amd64.deb ... Unpacking libexpat1:amd64 (2.7.1-1) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../python3.13-minimal_3.13.4-1_amd64.deb ... Unpacking python3.13-minimal (3.13.4-1) ... Setting up libpython3.13-minimal:amd64 (3.13.4-1) ... Setting up libexpat1:amd64 (2.7.1-1) ... Setting up python3.13-minimal (3.13.4-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20184 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.13.4-1_amd64.deb ... Unpacking python3-minimal (3.13.4-1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_13.0.0_all.deb ... Unpacking media-types (13.0.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.5_all.deb ... Unpacking netbase (6.5) ... Selecting previously unselected package tzdata. Preparing to unpack .../3-tzdata_2025b-3_all.deb ... Unpacking tzdata (2025b-3) ... Selecting previously unselected package libffi8:amd64. Preparing to unpack .../4-libffi8_3.4.8-2_amd64.deb ... Unpacking libffi8:amd64 (3.4.8-2) ... Selecting previously unselected package readline-common. Preparing to unpack .../5-readline-common_8.2-6_all.deb ... Unpacking readline-common (8.2-6) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../6-libreadline8t64_8.2-6_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-6) ... Selecting previously unselected package libpython3.13-stdlib:amd64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.4-1_amd64.deb ... Unpacking libpython3.13-stdlib:amd64 (3.13.4-1) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.4-1_amd64.deb ... Unpacking python3.13 (3.13.4-1) ... Selecting previously unselected package libpython3-stdlib:amd64. 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Setting up libmagic-mgc (1:5.46-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.24.2) ... Setting up libuv1t64:amd64 (1.50.0-2) ... Setting up libmagic1t64:amd64 (1:5.46-5) ... Setting up libnghttp2-14:amd64 (1.64.0-1.1) ... Setting up gettext-base (0.23.1-2) ... Setting up m4 (1.4.19-8) ... Setting up file (1:5.46-5) ... Setting up libelf1t64:amd64 (0.192-4) ... Setting up tzdata (2025b-3) ... Current default time zone: 'Etc/UTC' Local time is now: Thu Jul 9 17:26:49 UTC 2026. Universal Time is now: Thu Jul 9 17:26:49 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20240727.1) ... Setting up libunistring5:amd64 (1.3-2) ... Setting up autopoint (0.23.1-2) ... Setting up autoconf (2.72-3.1) ... Setting up libffi8:amd64 (3.4.8-2) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.25) ... Setting up libuchardet0:amd64 (0.0.8-1+b2) ... Setting up ncbi-vdb-data (3.2.1+dfsg-2) ... Setting up netbase (6.5) ... Setting up libmbedcrypto16:amd64 (3.6.3-1) ... Setting up readline-common (8.2-6) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-1) ... Setting up libpopt0:amd64 (1.19+dfsg-2) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up gettext (0.23.1-2) ... Setting up libtool (2.5.4-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libmbedx509-7:amd64 (3.6.3-1) ... Setting up libmbedtls21:amd64 (3.6.3-1) ... Setting up libreadline8t64:amd64 (8.2-6) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up groff-base (1.23.0-9) ... Setting up libpython3.13-stdlib:amd64 (3.13.4-1) ... Setting up rsync (3.4.1+ds1-3) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Setting up libpython3-stdlib:amd64 (3.13.4-1) ... Setting up python3.13 (3.13.4-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libncbi-vdb3:amd64 (3.2.1+dfsg-2) ... Setting up python3 (3.13.4-1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up ncbi-blast+ (2.16.0+ds-7) ... Setting up ncbi-blast+-legacy (2.16.0+ds-7) ... Setting up debhelper (13.24.2) ... Processing triggers for libc-bin (2.41-8) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/metastudent-data-2.0.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../metastudent-data_2.0.1-8_source.changes dpkg-buildpackage: info: source package metastudent-data dpkg-buildpackage: info: source version 2.0.1-8 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf Makefile.am:4: warning: shell cat dataversion.txt: non-POSIX variable name Makefile.am:4: (probably a GNU make extension) Makefile.am:23: warning: dir $@: non-POSIX variable name Makefile.am:23: (probably a GNU make extension) dh_auto_configure ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking checking for a BSD-compatible install... /usr/bin/install -c checking whether sleep supports fractional seconds... yes checking filesystem timestamp resolution... 0.01 checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking xargs -n works... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile dh_auto_build make -j42 make[1]: Entering directory '/build/reproducible-path/metastudent-data-2.0.1' mkdir -p dataset_201401/BPO/ && \ makeblastdb -dbtype prot -in "dataset_201401/BPO/goasp.fasta" -out "dataset_201401/BPO/goasp.fasta" -blastdb_version 4 mkdir -p dataset_201401/MFO/ && \ makeblastdb -dbtype prot -in "dataset_201401/MFO/goasp.fasta" -out "dataset_201401/MFO/goasp.fasta" -blastdb_version 4 mkdir -p dataset_201401/CCO/ && \ makeblastdb -dbtype prot -in "dataset_201401/CCO/goasp.fasta" -out "dataset_201401/CCO/goasp.fasta" -blastdb_version 4 Building a new DB, current time: 07/09/2026 17:27:50 Building a new DB, current time: 07/09/2026 17:27:50 New DB name: /build/reproducible-path/metastudent-data-2.0.1/dataset_201401/CCO/goasp.fasta New DB name: /build/reproducible-path/metastudent-data-2.0.1/dataset_201401/MFO/goasp.fasta New DB title: dataset_201401/CCO/goasp.fasta New DB title: dataset_201401/MFO/goasp.fasta Sequence type: Protein Sequence type: Protein Keep MBits: T Maximum file size: 3000000000B Keep MBits: T Maximum file size: 3000000000B Building a new DB, current time: 07/09/2026 17:27:50 New DB name: /build/reproducible-path/metastudent-data-2.0.1/dataset_201401/BPO/goasp.fasta New DB title: dataset_201401/BPO/goasp.fasta Sequence type: Protein Keep MBits: T Maximum file size: 3000000000B Adding sequences from FASTA; added 392822 sequences in 31.9786 seconds. Adding sequences from FASTA; added 459503 sequences in 38.8805 seconds. Adding sequences from FASTA; added 486000 sequences in 39.086 seconds. make[1]: Leaving directory '/build/reproducible-path/metastudent-data-2.0.1' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/metastudent-data/ make -j42 install DESTDIR=/build/reproducible-path/metastudent-data-2.0.1/debian/metastudent-data AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/reproducible-path/metastudent-data-2.0.1' make[2]: Entering directory '/build/reproducible-path/metastudent-data-2.0.1' make[2]: Nothing to be done for 'install-exec-am'. mkdir -p "/build/reproducible-path/metastudent-data-2.0.1/debian/metastudent-data/usr/share/metastudent-data" && \ rsync -rt --include '*.txt' --include '*.dat' --include '*.phr' --include '*.pin' --include '*.psq' --exclude '*.*' "./dataset_201401" "/build/reproducible-path/metastudent-data-2.0.1/debian/metastudent-data/usr/share/metastudent-data/" && \ chmod -R a+rX "/build/reproducible-path/metastudent-data-2.0.1/debian/metastudent-data/usr/share/metastudent-data" && \ chmod -R u+rwX "/build/reproducible-path/metastudent-data-2.0.1/debian/metastudent-data/usr/share/metastudent-data" /usr/bin/mkdir -p '/build/reproducible-path/metastudent-data-2.0.1/debian/metastudent-data/usr/share/metastudent-data' /usr/bin/install -c -m 644 dataversion.txt '/build/reproducible-path/metastudent-data-2.0.1/debian/metastudent-data/usr/share/metastudent-data' make[2]: Leaving directory '/build/reproducible-path/metastudent-data-2.0.1' make[1]: Leaving directory '/build/reproducible-path/metastudent-data-2.0.1' dh_installdocs dh_installchangelogs dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'metastudent-data' in '../metastudent-data_2.0.1-8_all.deb'. dpkg-genbuildinfo --build=binary -O../metastudent-data_2.0.1-8_amd64.buildinfo dpkg-genchanges --build=binary -O../metastudent-data_2.0.1-8_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1787077 and its subdirectories I: Current time: Thu Jul 9 05:34:00 -12 2026 I: pbuilder-time-stamp: 1783618440 Thu Jul 9 17:34:04 UTC 2026 I: Signing ./b1/metastudent-data_2.0.1-8_amd64.buildinfo as metastudent-data_2.0.1-8_amd64.buildinfo.asc Thu Jul 9 17:34:04 UTC 2026 I: Signed ./b1/metastudent-data_2.0.1-8_amd64.buildinfo as ./b1/metastudent-data_2.0.1-8_amd64.buildinfo.asc Thu Jul 9 17:34:07 UTC 2026 - build #1 for metastudent-data/unstable/amd64 on ionos15-amd64 done. Starting cleanup. All cleanup done. Thu Jul 9 17:34:08 UTC 2026 - reproducible_build.sh stopped running as /tmp/jenkins-script-BooVh3qJ, removing. /srv/reproducible-results/rbuild-debian/r-b-build.jNHDRA7Q: total 16 drwxr-xr-x 2 jenkins jenkins 4096 Jun 6 11:11 b1 drwxr-xr-x 2 jenkins jenkins 4096 Jun 6 11:01 b2 -rw-r--r-- 1 jenkins jenkins 2136 Jan 20 2022 metastudent-data_2.0.1-8.dsc -rw------- 1 jenkins jenkins 3300 Jun 6 11:01 rbuildlog.Cxm3vuV /srv/reproducible-results/rbuild-debian/r-b-build.jNHDRA7Q/b1: total 219516 -rw-r--r-- 1 jenkins jenkins 32316 Jun 6 11:11 build.log -rw-r--r-- 1 jenkins jenkins 5444 Jun 6 11:11 metastudent-data_2.0.1-8.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2136 Jun 6 11:11 metastudent-data_2.0.1-8.dsc -rw-r--r-- 1 jenkins jenkins 224712688 Jun 6 11:11 metastudent-data_2.0.1-8_all.deb -rw-r--r-- 1 jenkins jenkins 5503 Jun 6 11:11 metastudent-data_2.0.1-8_amd64.buildinfo -rw-r--r-- 1 jenkins jenkins 6385 Jun 6 11:11 metastudent-data_2.0.1-8_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1191 Jun 6 11:11 metastudent-data_2.0.1-8_amd64.changes -rw-r--r-- 1 jenkins jenkins 1334 Jun 6 11:11 metastudent-data_2.0.1-8_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.jNHDRA7Q/b2: total 0 Fri Jun 6 11:11:09 UTC 2025 I: Deleting $TMPDIR on ionos15-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Jul 9 05:24:46 -12 2026 I: pbuilder-time-stamp: 1783617886 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [metastudent-data_2.0.1-8.dsc] I: copying [./metastudent-data_2.0.1.orig.tar.xz] I: copying [./metastudent-data_2.0.1-8.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./metastudent-data_2.0.1-8.dsc: no acceptable signature found dpkg-source: info: extracting metastudent-data in metastudent-data-2.0.1 dpkg-source: info: unpacking metastudent-data_2.0.1.orig.tar.xz dpkg-source: info: unpacking metastudent-data_2.0.1-8.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 01_formatdb_fix_prot_dbtype.patch dpkg-source: info: applying use_blastdb_format_4.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1787077/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='bc0acd0c7f3748d99b06896646b16a9f' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1787077' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.jNHDRA7Q/pbuilderrc_9aJ1 --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.jNHDRA7Q/b1 --logfile b1/build.log metastudent-data_2.0.1-8.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos15-amd64 6.12.22+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.22-1~bpo12+1 (2025-04-25) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 12 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1787077/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), ncbi-blast+-legacy | blast2, rsync dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19850 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on ncbi-blast+-legacy | blast2; however: Package ncbi-blast+-legacy is not installed. Package blast2 is not installed. pbuilder-satisfydepends-dummy depends on rsync; however: Package rsync is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} liblmdb0{a} libmagic-mgc{a} libmagic1t64{a} libmbedcrypto16{a} libmbedtls21{a} libmbedx509-7{a} libncbi-vdb3{a} libnghttp2-14{a} libpipeline1{a} libpopt0{a} libpython3-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libxml2{a} m4{a} man-db{a} media-types{a} ncbi-blast+{a} ncbi-blast+-legacy{a} ncbi-data{a} ncbi-vdb-data{a} netbase{a} po-debconf{a} python3{a} python3-minimal{a} python3.13{a} python3.13-minimal{a} readline-common{a} rsync{a} sensible-utils{a} tzdata{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 56 newly installed, 0 to remove and 0 not upgraded. Need to get 40.0 MB of archives. After unpacking 173 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 libpython3.13-minimal amd64 3.13.4-1 [862 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.7.1-1 [108 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 python3.13-minimal amd64 3.13.4-1 [2218 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 python3-minimal amd64 3.13.4-1 [27.3 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 media-types all 13.0.0 [29.3 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 netbase all 6.5 [12.4 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 tzdata all 2025b-3 [260 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 libffi8 amd64 3.4.8-2 [24.1 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 readline-common all 8.2-6 [69.4 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 libreadline8t64 amd64 8.2-6 [169 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 libpython3.13-stdlib amd64 3.13.4-1 [1958 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 python3.13 amd64 3.13.4-1 [756 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 libpython3-stdlib amd64 3.13.4-1 [10.2 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 python3 amd64 3.13.4-1 [28.3 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 libpopt0 amd64 1.19+dfsg-2 [43.8 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 rsync amd64 3.4.1+ds1-3 [428 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.25 [25.0 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.1-2 [243 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.41-5 [94.6 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-8 [294 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.17-4 [862 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.24.2 [90.9 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-4 [539 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 38 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 41 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-1 [698 kB] Get: 42 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.1-2 [1680 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.24.2 [919 kB] Get: 46 http://deb.debian.org/debian unstable/main amd64 liblmdb0 amd64 0.9.31-1+b2 [45.2 kB] Get: 47 http://deb.debian.org/debian unstable/main amd64 libmbedcrypto16 amd64 3.6.3-1 [357 kB] Get: 48 http://deb.debian.org/debian unstable/main amd64 libmbedx509-7 amd64 3.6.3-1 [149 kB] Get: 49 http://deb.debian.org/debian unstable/main amd64 libmbedtls21 amd64 3.6.3-1 [236 kB] Get: 50 http://deb.debian.org/debian unstable/main amd64 ncbi-vdb-data all 3.2.1+dfsg-2 [88.5 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 libncbi-vdb3 amd64 3.2.1+dfsg-2 [1164 kB] Get: 52 http://deb.debian.org/debian unstable/main amd64 libnghttp2-14 amd64 1.64.0-1.1 [76.0 kB] Get: 53 http://deb.debian.org/debian unstable/main amd64 libuv1t64 amd64 1.50.0-2 [154 kB] Get: 54 http://deb.debian.org/debian unstable/main amd64 ncbi-data all 6.1.20170106+dfsg2-6 [3541 kB] Get: 55 http://deb.debian.org/debian unstable/main amd64 ncbi-blast+ amd64 2.16.0+ds-7 [16.0 MB] Get: 56 http://deb.debian.org/debian unstable/main amd64 ncbi-blast+-legacy all 2.16.0+ds-7 [12.6 kB] Fetched 40.0 MB in 1s (44.4 MB/s) Preconfiguring packages ... Selecting previously unselected package libpython3.13-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19850 files and directories currently installed.) Preparing to unpack .../libpython3.13-minimal_3.13.4-1_amd64.deb ... Unpacking libpython3.13-minimal:amd64 (3.13.4-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.7.1-1_amd64.deb ... Unpacking libexpat1:amd64 (2.7.1-1) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../python3.13-minimal_3.13.4-1_amd64.deb ... Unpacking python3.13-minimal (3.13.4-1) ... Setting up libpython3.13-minimal:amd64 (3.13.4-1) ... Setting up libexpat1:amd64 (2.7.1-1) ... Setting up python3.13-minimal (3.13.4-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20184 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.13.4-1_amd64.deb ... Unpacking python3-minimal (3.13.4-1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_13.0.0_all.deb ... Unpacking media-types (13.0.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.5_all.deb ... Unpacking netbase (6.5) ... Selecting previously unselected package tzdata. Preparing to unpack .../3-tzdata_2025b-3_all.deb ... Unpacking tzdata (2025b-3) ... Selecting previously unselected package libffi8:amd64. Preparing to unpack .../4-libffi8_3.4.8-2_amd64.deb ... Unpacking libffi8:amd64 (3.4.8-2) ... Selecting previously unselected package readline-common. Preparing to unpack .../5-readline-common_8.2-6_all.deb ... Unpacking readline-common (8.2-6) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../6-libreadline8t64_8.2-6_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-6) ... Selecting previously unselected package libpython3.13-stdlib:amd64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.4-1_amd64.deb ... Unpacking libpython3.13-stdlib:amd64 (3.13.4-1) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.4-1_amd64.deb ... Unpacking python3.13 (3.13.4-1) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../9-libpython3-stdlib_3.13.4-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.13.4-1) ... Setting up python3-minimal (3.13.4-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21199 files and directories currently installed.) Preparing to unpack .../00-python3_3.13.4-1_amd64.deb ... Unpacking python3 (3.13.4-1) ... Selecting previously unselected package libpopt0:amd64. Preparing to unpack .../01-libpopt0_1.19+dfsg-2_amd64.deb ... Unpacking libpopt0:amd64 (1.19+dfsg-2) ... Selecting previously unselected package rsync. Preparing to unpack .../02-rsync_3.4.1+ds1-3_amd64.deb ... Unpacking rsync (3.4.1+ds1-3) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../03-sensible-utils_0.0.25_all.deb ... Unpacking sensible-utils (0.0.25) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../04-libmagic-mgc_1%3a5.46-5_amd64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../05-libmagic1t64_1%3a5.46-5_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../06-file_1%3a5.46-5_amd64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../07-gettext-base_0.23.1-2_amd64.deb ... Unpacking gettext-base (0.23.1-2) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../08-libuchardet0_0.0.8-1+b2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../09-groff-base_1.23.0-9_amd64.deb ... Unpacking groff-base (1.23.0-9) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../10-bsdextrautils_2.41-5_amd64.deb ... Unpacking bsdextrautils (2.41-5) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../11-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../12-man-db_2.13.1-1_amd64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../13-m4_1.4.19-8_amd64.deb ... Unpacking m4 (1.4.19-8) ... Selecting previously unselected package autoconf. Preparing to unpack .../14-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../15-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../16-automake_1%3a1.17-4_all.deb ... Unpacking automake (1:1.17-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../17-autopoint_0.23.1-2_all.deb ... Unpacking autopoint (0.23.1-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../18-libdebhelper-perl_13.24.2_all.deb ... Unpacking libdebhelper-perl (13.24.2) ... Selecting previously unselected package libtool. Preparing to unpack .../19-libtool_2.5.4-4_all.deb ... Unpacking libtool (2.5.4-4) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../20-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... 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Unpacking libunistring5:amd64 (1.3-2) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../27-libxml2_2.12.7+dfsg+really2.9.14-1_amd64.deb ... Unpacking libxml2:amd64 (2.12.7+dfsg+really2.9.14-1) ... Selecting previously unselected package gettext. Preparing to unpack .../28-gettext_0.23.1-2_amd64.deb ... Unpacking gettext (0.23.1-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../29-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../30-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../31-debhelper_13.24.2_all.deb ... Unpacking debhelper (13.24.2) ... Selecting previously unselected package liblmdb0:amd64. Preparing to unpack .../32-liblmdb0_0.9.31-1+b2_amd64.deb ... Unpacking liblmdb0:amd64 (0.9.31-1+b2) ... Selecting previously unselected package libmbedcrypto16:amd64. Preparing to unpack .../33-libmbedcrypto16_3.6.3-1_amd64.deb ... Unpacking libmbedcrypto16:amd64 (3.6.3-1) ... Selecting previously unselected package libmbedx509-7:amd64. Preparing to unpack .../34-libmbedx509-7_3.6.3-1_amd64.deb ... Unpacking libmbedx509-7:amd64 (3.6.3-1) ... Selecting previously unselected package libmbedtls21:amd64. Preparing to unpack .../35-libmbedtls21_3.6.3-1_amd64.deb ... Unpacking libmbedtls21:amd64 (3.6.3-1) ... Selecting previously unselected package ncbi-vdb-data. Preparing to unpack .../36-ncbi-vdb-data_3.2.1+dfsg-2_all.deb ... Unpacking ncbi-vdb-data (3.2.1+dfsg-2) ... Selecting previously unselected package libncbi-vdb3:amd64. Preparing to unpack .../37-libncbi-vdb3_3.2.1+dfsg-2_amd64.deb ... Unpacking libncbi-vdb3:amd64 (3.2.1+dfsg-2) ... Selecting previously unselected package libnghttp2-14:amd64. Preparing to unpack .../38-libnghttp2-14_1.64.0-1.1_amd64.deb ... Unpacking libnghttp2-14:amd64 (1.64.0-1.1) ... Selecting previously unselected package libuv1t64:amd64. Preparing to unpack .../39-libuv1t64_1.50.0-2_amd64.deb ... Unpacking libuv1t64:amd64 (1.50.0-2) ... Selecting previously unselected package ncbi-data. Preparing to unpack .../40-ncbi-data_6.1.20170106+dfsg2-6_all.deb ... Unpacking ncbi-data (6.1.20170106+dfsg2-6) ... Selecting previously unselected package ncbi-blast+. Preparing to unpack .../41-ncbi-blast+_2.16.0+ds-7_amd64.deb ... Unpacking ncbi-blast+ (2.16.0+ds-7) ... Selecting previously unselected package ncbi-blast+-legacy. Preparing to unpack .../42-ncbi-blast+-legacy_2.16.0+ds-7_all.deb ... Unpacking ncbi-blast+-legacy (2.16.0+ds-7) ... Setting up media-types (13.0.0) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up liblmdb0:amd64 (0.9.31-1+b2) ... Setting up ncbi-data (6.1.20170106+dfsg2-6) ... Setting up bsdextrautils (2.41-5) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.24.2) ... Setting up libuv1t64:amd64 (1.50.0-2) ... Setting up libmagic1t64:amd64 (1:5.46-5) ... Setting up libnghttp2-14:amd64 (1.64.0-1.1) ... Setting up gettext-base (0.23.1-2) ... Setting up m4 (1.4.19-8) ... Setting up file (1:5.46-5) ... Setting up libelf1t64:amd64 (0.192-4) ... Setting up tzdata (2025b-3) ... Current default time zone: 'Etc/UTC' Local time is now: Thu Jul 9 17:26:49 UTC 2026. Universal Time is now: Thu Jul 9 17:26:49 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20240727.1) ... Setting up libunistring5:amd64 (1.3-2) ... Setting up autopoint (0.23.1-2) ... Setting up autoconf (2.72-3.1) ... Setting up libffi8:amd64 (3.4.8-2) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.25) ... Setting up libuchardet0:amd64 (0.0.8-1+b2) ... Setting up ncbi-vdb-data (3.2.1+dfsg-2) ... Setting up netbase (6.5) ... Setting up libmbedcrypto16:amd64 (3.6.3-1) ... Setting up readline-common (8.2-6) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-1) ... Setting up libpopt0:amd64 (1.19+dfsg-2) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up gettext (0.23.1-2) ... Setting up libtool (2.5.4-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libmbedx509-7:amd64 (3.6.3-1) ... Setting up libmbedtls21:amd64 (3.6.3-1) ... Setting up libreadline8t64:amd64 (8.2-6) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up groff-base (1.23.0-9) ... Setting up libpython3.13-stdlib:amd64 (3.13.4-1) ... Setting up rsync (3.4.1+ds1-3) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Setting up libpython3-stdlib:amd64 (3.13.4-1) ... Setting up python3.13 (3.13.4-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libncbi-vdb3:amd64 (3.2.1+dfsg-2) ... Setting up python3 (3.13.4-1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up ncbi-blast+ (2.16.0+ds-7) ... Setting up ncbi-blast+-legacy (2.16.0+ds-7) ... Setting up debhelper (13.24.2) ... Processing triggers for libc-bin (2.41-8) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/metastudent-data-2.0.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../metastudent-data_2.0.1-8_source.changes dpkg-buildpackage: info: source package metastudent-data dpkg-buildpackage: info: source version 2.0.1-8 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf Makefile.am:4: warning: shell cat dataversion.txt: non-POSIX variable name Makefile.am:4: (probably a GNU make extension) Makefile.am:23: warning: dir $@: non-POSIX variable name Makefile.am:23: (probably a GNU make extension) dh_auto_configure ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking checking for a BSD-compatible install... /usr/bin/install -c checking whether sleep supports fractional seconds... yes checking filesystem timestamp resolution... 0.01 checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking xargs -n works... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile dh_auto_build make -j42 make[1]: Entering directory '/build/reproducible-path/metastudent-data-2.0.1' mkdir -p dataset_201401/BPO/ && \ makeblastdb -dbtype prot -in "dataset_201401/BPO/goasp.fasta" -out "dataset_201401/BPO/goasp.fasta" -blastdb_version 4 mkdir -p dataset_201401/MFO/ && \ makeblastdb -dbtype prot -in "dataset_201401/MFO/goasp.fasta" -out "dataset_201401/MFO/goasp.fasta" -blastdb_version 4 mkdir -p dataset_201401/CCO/ && \ makeblastdb -dbtype prot -in "dataset_201401/CCO/goasp.fasta" -out "dataset_201401/CCO/goasp.fasta" -blastdb_version 4 Building a new DB, current time: 07/09/2026 17:27:50 Building a new DB, current time: 07/09/2026 17:27:50 New DB name: /build/reproducible-path/metastudent-data-2.0.1/dataset_201401/CCO/goasp.fasta New DB name: /build/reproducible-path/metastudent-data-2.0.1/dataset_201401/MFO/goasp.fasta New DB title: dataset_201401/CCO/goasp.fasta New DB title: dataset_201401/MFO/goasp.fasta Sequence type: Protein Sequence type: Protein Keep MBits: T Maximum file size: 3000000000B Keep MBits: T Maximum file size: 3000000000B Building a new DB, current time: 07/09/2026 17:27:50 New DB name: /build/reproducible-path/metastudent-data-2.0.1/dataset_201401/BPO/goasp.fasta New DB title: dataset_201401/BPO/goasp.fasta Sequence type: Protein Keep MBits: T Maximum file size: 3000000000B Adding sequences from FASTA; added 392822 sequences in 31.9786 seconds. Adding sequences from FASTA; added 459503 sequences in 38.8805 seconds. Adding sequences from FASTA; added 486000 sequences in 39.086 seconds. make[1]: Leaving directory '/build/reproducible-path/metastudent-data-2.0.1' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/metastudent-data/ make -j42 install DESTDIR=/build/reproducible-path/metastudent-data-2.0.1/debian/metastudent-data AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/reproducible-path/metastudent-data-2.0.1' make[2]: Entering directory '/build/reproducible-path/metastudent-data-2.0.1' make[2]: Nothing to be done for 'install-exec-am'. mkdir -p "/build/reproducible-path/metastudent-data-2.0.1/debian/metastudent-data/usr/share/metastudent-data" && \ rsync -rt --include '*.txt' --include '*.dat' --include '*.phr' --include '*.pin' --include '*.psq' --exclude '*.*' "./dataset_201401" "/build/reproducible-path/metastudent-data-2.0.1/debian/metastudent-data/usr/share/metastudent-data/" && \ chmod -R a+rX "/build/reproducible-path/metastudent-data-2.0.1/debian/metastudent-data/usr/share/metastudent-data" && \ chmod -R u+rwX "/build/reproducible-path/metastudent-data-2.0.1/debian/metastudent-data/usr/share/metastudent-data" /usr/bin/mkdir -p '/build/reproducible-path/metastudent-data-2.0.1/debian/metastudent-data/usr/share/metastudent-data' /usr/bin/install -c -m 644 dataversion.txt '/build/reproducible-path/metastudent-data-2.0.1/debian/metastudent-data/usr/share/metastudent-data' make[2]: Leaving directory '/build/reproducible-path/metastudent-data-2.0.1' make[1]: Leaving directory '/build/reproducible-path/metastudent-data-2.0.1' dh_installdocs dh_installchangelogs dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'metastudent-data' in '../metastudent-data_2.0.1-8_all.deb'. dpkg-genbuildinfo --build=binary -O../metastudent-data_2.0.1-8_amd64.buildinfo dpkg-genchanges --build=binary -O../metastudent-data_2.0.1-8_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1787077 and its subdirectories I: Current time: Thu Jul 9 05:34:00 -12 2026 I: pbuilder-time-stamp: 1783618440 Fri Jun 6 11:11:10 UTC 2025 I: 1st build successful. Starting 2nd build on remote node ionos1-amd64.debian.net. Fri Jun 6 11:11:10 UTC 2025 I: Preparing to do remote build '2' on ionos1-amd64.debian.net. Fri Jun 6 11:11:10 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos1-amd64.debian.net is marked as down. Fri Jun 6 11:11:10 UTC 2025 - checking via ssh if ionos1-amd64.debian.net is up. removed '/tmp/read-only-fs-test-19lSp7' ==================================================================================== Fri Jun 6 11:11:11 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos1-amd64, called using "2 metastudent-data unstable /srv/reproducible-results/rbuild-debian/r-b-build.jNHDRA7Q 2.0.1-8" as arguments. Fri Jun 6 11:11:11 UTC 2025 - actually running "reproducible_build.sh" (md5sum 44ec6a3142940d5e9a7ab76543d96029) as "/tmp/jenkins-script-YTtFncYy" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Fri Jun 6 11:11:11 UTC 2025 I: Downloading source for unstable/metastudent-data=2.0.1-8 Reading package lists... NOTICE: 'metastudent-data' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/metastudent-data.git Please use: git clone https://salsa.debian.org/med-team/metastudent-data.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 153 MB of source archives. Get:1 http://deb.debian.org/debian unstable/main metastudent-data 2.0.1-8 (dsc) [2136 B] Get:2 http://deb.debian.org/debian unstable/main metastudent-data 2.0.1-8 (tar) [153 MB] Get:3 http://deb.debian.org/debian unstable/main metastudent-data 2.0.1-8 (diff) [5444 B] Fetched 153 MB in 2s (91.8 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'metastudent-data' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/metastudent-data.git Please use: git clone https://salsa.debian.org/med-team/metastudent-data.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 153 MB of source archives. Get:1 http://deb.debian.org/debian unstable/main metastudent-data 2.0.1-8 (dsc) [2136 B] Get:2 http://deb.debian.org/debian unstable/main metastudent-data 2.0.1-8 (tar) [153 MB] Get:3 http://deb.debian.org/debian unstable/main metastudent-data 2.0.1-8 (diff) [5444 B] Fetched 153 MB in 2s (91.8 MB/s) Download complete and in download only mode ============================================================================= Re-Building metastudent-data in unstable on amd64 on ionos1-amd64 now. Date: Fri Jun 6 11:11:13 UTC 2025 Date UTC: Fri Jun 6 11:11:13 UTC 2025 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.jNHDRA7Q + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.jNHDRA7Q/pbuilderrc_EaGI + case ${ARCH} in + case $ARCH in + locale=et_EE + language=et + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' metastudent-data = debian-installer -o metastudent-data = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' metastudent-data = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.jNHDRA7Q/pbuilderrc_EaGI --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.jNHDRA7Q/b2 --logfile b2/build.log metastudent-data_2.0.1-8.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Sat Jun 7 01:11:13 +14 2025 I: pbuilder-time-stamp: 1749208273 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [metastudent-data_2.0.1-8.dsc] I: copying [./metastudent-data_2.0.1.orig.tar.xz] I: copying [./metastudent-data_2.0.1-8.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./metastudent-data_2.0.1-8.dsc: no acceptable signature found dpkg-source: info: extracting metastudent-data in metastudent-data-2.0.1 dpkg-source: info: unpacking metastudent-data_2.0.1.orig.tar.xz dpkg-source: info: unpacking metastudent-data_2.0.1-8.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 01_formatdb_fix_prot_dbtype.patch dpkg-source: info: applying use_blastdb_format_4.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/577278/tmp/hooks/D01_modify_environment starting debug: Running on ionos1-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Jun 6 11:11 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/577278/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/577278/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.2.37(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' DIRSTACK=() DISTRIBUTION=unstable EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=f0f4716f07bb435381fb2fa4bc786550 LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=577278 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.jNHDRA7Q/pbuilderrc_EaGI --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.jNHDRA7Q/b2 --logfile b2/build.log metastudent-data_2.0.1-8.dsc' SUDO_GID=110 SUDO_UID=105 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://46.16.76.132:3128 I: uname -a Linux i-capture-the-hostname 6.1.0-37-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.140-1 (2025-05-22) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 12 19:25 /bin -> usr/bin I: user script /srv/workspace/pbuilder/577278/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), ncbi-blast+-legacy | blast2, rsync dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19850 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on ncbi-blast+-legacy | blast2; however: Package ncbi-blast+-legacy is not installed. Package blast2 is not installed. pbuilder-satisfydepends-dummy depends on rsync; however: Package rsync is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} liblmdb0{a} libmagic-mgc{a} libmagic1t64{a} libmbedcrypto16{a} libmbedtls21{a} libmbedx509-7{a} libncbi-vdb3{a} libnghttp2-14{a} libpipeline1{a} libpopt0{a} libpython3-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libxml2{a} m4{a} man-db{a} media-types{a} ncbi-blast+{a} ncbi-blast+-legacy{a} ncbi-data{a} ncbi-vdb-data{a} netbase{a} po-debconf{a} python3{a} python3-minimal{a} python3.13{a} python3.13-minimal{a} readline-common{a} rsync{a} sensible-utils{a} tzdata{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 56 newly installed, 0 to remove and 0 not upgraded. Need to get 40.0 MB of archives. After unpacking 173 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 libpython3.13-minimal amd64 3.13.4-1 [862 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.7.1-1 [108 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 python3.13-minimal amd64 3.13.4-1 [2218 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 python3-minimal amd64 3.13.4-1 [27.3 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 media-types all 13.0.0 [29.3 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 netbase all 6.5 [12.4 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 tzdata all 2025b-3 [260 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 libffi8 amd64 3.4.8-2 [24.1 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 readline-common all 8.2-6 [69.4 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 libreadline8t64 amd64 8.2-6 [169 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 libpython3.13-stdlib amd64 3.13.4-1 [1958 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 python3.13 amd64 3.13.4-1 [756 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 libpython3-stdlib amd64 3.13.4-1 [10.2 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 python3 amd64 3.13.4-1 [28.3 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 libpopt0 amd64 1.19+dfsg-2 [43.8 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 rsync amd64 3.4.1+ds1-3 [428 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.25 [25.0 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.1-2 [243 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.41-5 [94.6 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-8 [294 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.17-4 [862 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.24.2 [90.9 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-4 [539 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 38 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 41 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-1 [698 kB] Get: 42 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.1-2 [1680 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.24.2 [919 kB] Get: 46 http://deb.debian.org/debian unstable/main amd64 liblmdb0 amd64 0.9.31-1+b2 [45.2 kB] Get: 47 http://deb.debian.org/debian unstable/main amd64 libmbedcrypto16 amd64 3.6.3-1 [357 kB] Get: 48 http://deb.debian.org/debian unstable/main amd64 libmbedx509-7 amd64 3.6.3-1 [149 kB] Get: 49 http://deb.debian.org/debian unstable/main amd64 libmbedtls21 amd64 3.6.3-1 [236 kB] Get: 50 http://deb.debian.org/debian unstable/main amd64 ncbi-vdb-data all 3.2.1+dfsg-2 [88.5 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 libncbi-vdb3 amd64 3.2.1+dfsg-2 [1164 kB] Get: 52 http://deb.debian.org/debian unstable/main amd64 libnghttp2-14 amd64 1.64.0-1.1 [76.0 kB] Get: 53 http://deb.debian.org/debian unstable/main amd64 libuv1t64 amd64 1.50.0-2 [154 kB] Get: 54 http://deb.debian.org/debian unstable/main amd64 ncbi-data all 6.1.20170106+dfsg2-6 [3541 kB] Get: 55 http://deb.debian.org/debian unstable/main amd64 ncbi-blast+ amd64 2.16.0+ds-7 [16.0 MB] Get: 56 http://deb.debian.org/debian unstable/main amd64 ncbi-blast+-legacy all 2.16.0+ds-7 [12.6 kB] Fetched 40.0 MB in 1s (65.9 MB/s) Preconfiguring packages ... Selecting previously unselected package libpython3.13-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19850 files and directories currently installed.) Preparing to unpack .../libpython3.13-minimal_3.13.4-1_amd64.deb ... Unpacking libpython3.13-minimal:amd64 (3.13.4-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.7.1-1_amd64.deb ... Unpacking libexpat1:amd64 (2.7.1-1) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../python3.13-minimal_3.13.4-1_amd64.deb ... Unpacking python3.13-minimal (3.13.4-1) ... Setting up libpython3.13-minimal:amd64 (3.13.4-1) ... Setting up libexpat1:amd64 (2.7.1-1) ... Setting up python3.13-minimal (3.13.4-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20184 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.13.4-1_amd64.deb ... Unpacking python3-minimal (3.13.4-1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_13.0.0_all.deb ... Unpacking media-types (13.0.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.5_all.deb ... Unpacking netbase (6.5) ... Selecting previously unselected package tzdata. Preparing to unpack .../3-tzdata_2025b-3_all.deb ... Unpacking tzdata (2025b-3) ... Selecting previously unselected package libffi8:amd64. Preparing to unpack .../4-libffi8_3.4.8-2_amd64.deb ... Unpacking libffi8:amd64 (3.4.8-2) ... Selecting previously unselected package readline-common. Preparing to unpack .../5-readline-common_8.2-6_all.deb ... Unpacking readline-common (8.2-6) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../6-libreadline8t64_8.2-6_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-6) ... Selecting previously unselected package libpython3.13-stdlib:amd64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.4-1_amd64.deb ... Unpacking libpython3.13-stdlib:amd64 (3.13.4-1) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.4-1_amd64.deb ... Unpacking python3.13 (3.13.4-1) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../9-libpython3-stdlib_3.13.4-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.13.4-1) ... Setting up python3-minimal (3.13.4-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21199 files and directories currently installed.) Preparing to unpack .../00-python3_3.13.4-1_amd64.deb ... Unpacking python3 (3.13.4-1) ... Selecting previously unselected package libpopt0:amd64. 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Unpacking liblmdb0:amd64 (0.9.31-1+b2) ... Selecting previously unselected package libmbedcrypto16:amd64. Preparing to unpack .../33-libmbedcrypto16_3.6.3-1_amd64.deb ... Unpacking libmbedcrypto16:amd64 (3.6.3-1) ... Selecting previously unselected package libmbedx509-7:amd64. Preparing to unpack .../34-libmbedx509-7_3.6.3-1_amd64.deb ... Unpacking libmbedx509-7:amd64 (3.6.3-1) ... Selecting previously unselected package libmbedtls21:amd64. Preparing to unpack .../35-libmbedtls21_3.6.3-1_amd64.deb ... Unpacking libmbedtls21:amd64 (3.6.3-1) ... Selecting previously unselected package ncbi-vdb-data. Preparing to unpack .../36-ncbi-vdb-data_3.2.1+dfsg-2_all.deb ... Unpacking ncbi-vdb-data (3.2.1+dfsg-2) ... Selecting previously unselected package libncbi-vdb3:amd64. Preparing to unpack .../37-libncbi-vdb3_3.2.1+dfsg-2_amd64.deb ... Unpacking libncbi-vdb3:amd64 (3.2.1+dfsg-2) ... Selecting previously unselected package libnghttp2-14:amd64. Preparing to unpack .../38-libnghttp2-14_1.64.0-1.1_amd64.deb ... Unpacking libnghttp2-14:amd64 (1.64.0-1.1) ... Selecting previously unselected package libuv1t64:amd64. Preparing to unpack .../39-libuv1t64_1.50.0-2_amd64.deb ... Unpacking libuv1t64:amd64 (1.50.0-2) ... Selecting previously unselected package ncbi-data. Preparing to unpack .../40-ncbi-data_6.1.20170106+dfsg2-6_all.deb ... Unpacking ncbi-data (6.1.20170106+dfsg2-6) ... Selecting previously unselected package ncbi-blast+. Preparing to unpack .../41-ncbi-blast+_2.16.0+ds-7_amd64.deb ... Unpacking ncbi-blast+ (2.16.0+ds-7) ... Selecting previously unselected package ncbi-blast+-legacy. Preparing to unpack .../42-ncbi-blast+-legacy_2.16.0+ds-7_all.deb ... Unpacking ncbi-blast+-legacy (2.16.0+ds-7) ... Setting up media-types (13.0.0) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up liblmdb0:amd64 (0.9.31-1+b2) ... Setting up ncbi-data (6.1.20170106+dfsg2-6) ... Setting up bsdextrautils (2.41-5) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.24.2) ... Setting up libuv1t64:amd64 (1.50.0-2) ... Setting up libmagic1t64:amd64 (1:5.46-5) ... Setting up libnghttp2-14:amd64 (1.64.0-1.1) ... Setting up gettext-base (0.23.1-2) ... Setting up m4 (1.4.19-8) ... Setting up file (1:5.46-5) ... Setting up libelf1t64:amd64 (0.192-4) ... Setting up tzdata (2025b-3) ... Current default time zone: 'Etc/UTC' Local time is now: Fri Jun 6 11:12:07 UTC 2025. Universal Time is now: Fri Jun 6 11:12:07 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20240727.1) ... Setting up libunistring5:amd64 (1.3-2) ... Setting up autopoint (0.23.1-2) ... Setting up autoconf (2.72-3.1) ... Setting up libffi8:amd64 (3.4.8-2) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.25) ... Setting up libuchardet0:amd64 (0.0.8-1+b2) ... Setting up ncbi-vdb-data (3.2.1+dfsg-2) ... Setting up netbase (6.5) ... Setting up libmbedcrypto16:amd64 (3.6.3-1) ... Setting up readline-common (8.2-6) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-1) ... Setting up libpopt0:amd64 (1.19+dfsg-2) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up gettext (0.23.1-2) ... Setting up libtool (2.5.4-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libmbedx509-7:amd64 (3.6.3-1) ... Setting up libmbedtls21:amd64 (3.6.3-1) ... Setting up libreadline8t64:amd64 (8.2-6) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up groff-base (1.23.0-9) ... Setting up libpython3.13-stdlib:amd64 (3.13.4-1) ... Setting up rsync (3.4.1+ds1-3) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Setting up libpython3-stdlib:amd64 (3.13.4-1) ... Setting up python3.13 (3.13.4-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libncbi-vdb3:amd64 (3.2.1+dfsg-2) ... Setting up python3 (3.13.4-1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up ncbi-blast+ (2.16.0+ds-7) ... Setting up ncbi-blast+-legacy (2.16.0+ds-7) ... Setting up debhelper (13.24.2) ... Processing triggers for libc-bin (2.41-8) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/577278/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for unstable I: user script /srv/workspace/pbuilder/577278/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/metastudent-data-2.0.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../metastudent-data_2.0.1-8_source.changes dpkg-buildpackage: info: source package metastudent-data dpkg-buildpackage: info: source version 2.0.1-8 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf Makefile.am:4: warning: shell cat dataversion.txt: non-POSIX variable name Makefile.am:4: (probably a GNU make extension) Makefile.am:23: warning: dir $@: non-POSIX variable name Makefile.am:23: (probably a GNU make extension) dh_auto_configure ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking checking for a BSD-compatible install... /usr/bin/install -c checking whether sleep supports fractional seconds... yes checking filesystem timestamp resolution... 0.01 checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking xargs -n works... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile dh_auto_build make -j40 make[1]: Entering directory '/build/reproducible-path/metastudent-data-2.0.1' mkdir -p dataset_201401/BPO/ && \ makeblastdb -dbtype prot -in "dataset_201401/BPO/goasp.fasta" -out "dataset_201401/BPO/goasp.fasta" -blastdb_version 4 mkdir -p dataset_201401/MFO/ && \ makeblastdb -dbtype prot -in "dataset_201401/MFO/goasp.fasta" -out "dataset_201401/MFO/goasp.fasta" -blastdb_version 4 mkdir -p dataset_201401/CCO/ && \ makeblastdb -dbtype prot -in "dataset_201401/CCO/goasp.fasta" -out "dataset_201401/CCO/goasp.fasta" -blastdb_version 4 Building a new DB, current time: 06/06/2025 11:12:18 Building a new DB, current time: 06/06/2025 11:12:18 Building a new DB, current time: 06/06/2025 11:12:18 New DB name: /build/reproducible-path/metastudent-data-2.0.1/dataset_201401/MFO/goasp.fasta New DB name: /build/reproducible-path/metastudent-data-2.0.1/dataset_201401/CCO/goasp.fasta New DB title: dataset_201401/MFO/goasp.fasta New DB title: dataset_201401/CCO/goasp.fasta Sequence type: Protein Sequence type: Protein New DB name: /build/reproducible-path/metastudent-data-2.0.1/dataset_201401/BPO/goasp.fasta New DB title: dataset_201401/BPO/goasp.fasta Sequence type: Protein Keep MBits: T Keep MBits: T Maximum file size: 3000000000B Maximum file size: 3000000000B Keep MBits: T Maximum file size: 3000000000B Adding sequences from FASTA; added 392822 sequences in 10.2936 seconds. Adding sequences from FASTA; added 486000 sequences in 12.3009 seconds. Adding sequences from FASTA; added 459503 sequences in 12.3765 seconds. make[1]: Leaving directory '/build/reproducible-path/metastudent-data-2.0.1' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/metastudent-data/ make -j40 install DESTDIR=/build/reproducible-path/metastudent-data-2.0.1/debian/metastudent-data AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/reproducible-path/metastudent-data-2.0.1' make[2]: Entering directory '/build/reproducible-path/metastudent-data-2.0.1' make[2]: Nothing to be done for 'install-exec-am'. mkdir -p "/build/reproducible-path/metastudent-data-2.0.1/debian/metastudent-data/usr/share/metastudent-data" && \ rsync -rt --include '*.txt' --include '*.dat' --include '*.phr' --include '*.pin' --include '*.psq' --exclude '*.*' "./dataset_201401" "/build/reproducible-path/metastudent-data-2.0.1/debian/metastudent-data/usr/share/metastudent-data/" && \ chmod -R a+rX "/build/reproducible-path/metastudent-data-2.0.1/debian/metastudent-data/usr/share/metastudent-data" && \ chmod -R u+rwX "/build/reproducible-path/metastudent-data-2.0.1/debian/metastudent-data/usr/share/metastudent-data" /usr/bin/mkdir -p '/build/reproducible-path/metastudent-data-2.0.1/debian/metastudent-data/usr/share/metastudent-data' /usr/bin/install -c -m 644 dataversion.txt '/build/reproducible-path/metastudent-data-2.0.1/debian/metastudent-data/usr/share/metastudent-data' make[2]: Leaving directory '/build/reproducible-path/metastudent-data-2.0.1' make[1]: Leaving directory '/build/reproducible-path/metastudent-data-2.0.1' dh_installdocs dh_installchangelogs dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'metastudent-data' in '../metastudent-data_2.0.1-8_all.deb'. dpkg-genbuildinfo --build=binary -O../metastudent-data_2.0.1-8_amd64.buildinfo dpkg-genchanges --build=binary -O../metastudent-data_2.0.1-8_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/577278/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/577278/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/577278 and its subdirectories I: Current time: Sat Jun 7 01:13:21 +14 2025 I: pbuilder-time-stamp: 1749208401 + false + set +x Fri Jun 6 11:13:21 UTC 2025 I: Signing ./b2/metastudent-data_2.0.1-8_amd64.buildinfo as metastudent-data_2.0.1-8_amd64.buildinfo.asc Fri Jun 6 11:13:21 UTC 2025 I: Signed ./b2/metastudent-data_2.0.1-8_amd64.buildinfo as ./b2/metastudent-data_2.0.1-8_amd64.buildinfo.asc Fri Jun 6 11:13:21 UTC 2025 - build #2 for metastudent-data/unstable/amd64 on ionos1-amd64 done. Starting cleanup. All cleanup done. Fri Jun 6 11:13:21 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-YTtFncYy, removing. /srv/reproducible-results/rbuild-debian/r-b-build.jNHDRA7Q: total 48 drwxr-xr-x 2 jenkins jenkins 4096 Jun 6 11:11 b1 drwxr-xr-x 2 jenkins jenkins 4096 Jun 6 11:13 b2 -rw-r--r-- 1 jenkins jenkins 2136 Jan 20 2022 metastudent-data_2.0.1-8.dsc -rw------- 1 jenkins jenkins 35903 Jun 6 11:11 rbuildlog.Cxm3vuV /srv/reproducible-results/rbuild-debian/r-b-build.jNHDRA7Q/b1: total 219736 -rw-r--r-- 1 jenkins jenkins 32316 Jun 6 11:11 build.log -rw-r--r-- 1 jenkins jenkins 5444 Jun 6 11:11 metastudent-data_2.0.1-8.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2136 Jun 6 11:11 metastudent-data_2.0.1-8.dsc -rw-r--r-- 1 jenkins jenkins 224712688 Jun 6 11:11 metastudent-data_2.0.1-8_all.deb -rw-r--r-- 1 jenkins jenkins 5503 Jun 6 11:11 metastudent-data_2.0.1-8_amd64.buildinfo -rw-r--r-- 1 jenkins jenkins 6385 Jun 6 11:11 metastudent-data_2.0.1-8_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1191 Jun 6 11:11 metastudent-data_2.0.1-8_amd64.changes -rw-r--r-- 1 jenkins jenkins 1334 Jun 6 11:11 metastudent-data_2.0.1-8_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.jNHDRA7Q/b2: total 219520 -rw-r--r-- 1 jenkins jenkins 34225 Jun 6 11:13 build.log -rw-r--r-- 1 jenkins jenkins 5444 Jun 6 11:13 metastudent-data_2.0.1-8.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2136 Jun 6 11:13 metastudent-data_2.0.1-8.dsc -rw-r--r-- 1 jenkins jenkins 224712572 Jun 6 11:13 metastudent-data_2.0.1-8_all.deb -rw-r--r-- 1 jenkins jenkins 5492 Jun 6 11:13 metastudent-data_2.0.1-8_amd64.buildinfo -rw-r--r-- 1 jenkins jenkins 6374 Jun 6 11:13 metastudent-data_2.0.1-8_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1191 Jun 6 11:13 metastudent-data_2.0.1-8_amd64.changes -rw-r--r-- 1 jenkins jenkins 1334 Jun 6 11:13 metastudent-data_2.0.1-8_source.changes Fri Jun 6 11:13:23 UTC 2025 I: Deleting $TMPDIR on ionos1-amd64.debian.net. Fri Jun 6 11:13:23 UTC 2025 I: metastudent-data_2.0.1-8_amd64.changes: Format: 1.8 Date: Thu, 20 Jan 2022 10:14:54 +0100 Source: metastudent-data Binary: metastudent-data Architecture: all Version: 2.0.1-8 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: metastudent-data - predictor of Gene Ontology terms from protein sequence - data fil Changes: metastudent-data (2.0.1-8) unstable; urgency=medium . * Team upload. * Upstream download vanished * Standards-Version: 4.6.0 (routine-update) Checksums-Sha1: 24f6c3cb29b18c852dbd5d3c28f9a923bea03447 224712688 metastudent-data_2.0.1-8_all.deb c24de29ad2b8edf551c03461f83ab12b49e04497 5503 metastudent-data_2.0.1-8_amd64.buildinfo Checksums-Sha256: a4b25863a1e1bcd3c271e53c682f7e7c34976efa58d288485dae6886fe10f470 224712688 metastudent-data_2.0.1-8_all.deb b6f8a07b0eab342825b541d1ff210fa087e4abaabf3562996a9c037c18c9fb1e 5503 metastudent-data_2.0.1-8_amd64.buildinfo Files: 5324c052538bc5c583875c0c5bcb22a3 224712688 science optional metastudent-data_2.0.1-8_all.deb cf3369418288f42462dbb3b6665ac61c 5503 science optional metastudent-data_2.0.1-8_amd64.buildinfo removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/metastudent-data_2.0.1-8.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/metastudent-data_2.0.1-8.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/amd64/metastudent-data_2.0.1-8.build1.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/amd64/metastudent-data_2.0.1-8.build2.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/dbd/unstable/amd64/metastudent-data_2.0.1-8.diffoscope.html' removed '/var/lib/jenkins/userContent/reproducible/debian/dbdtxt/unstable/amd64/metastudent-data_2.0.1-8.diffoscope.txt.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/dbdjson/unstable/amd64/metastudent-data_2.0.1-8.diffoscope.json.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/buildinfo/unstable/amd64/metastudent-data_2.0.1-8_amd64.buildinfo' removed '/var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/metastudent-data_2.0.1-8.diff.gz' Diff of the two buildlogs: -- --- b1/build.log 2025-06-06 11:11:08.820354043 +0000 +++ b2/build.log 2025-06-06 11:13:22.277234013 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Thu Jul 9 05:24:46 -12 2026 -I: pbuilder-time-stamp: 1783617886 +I: Current time: Sat Jun 7 01:11:13 +14 2025 +I: pbuilder-time-stamp: 1749208273 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -25,52 +25,84 @@ dpkg-source: info: applying use_blastdb_format_4.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/1787077/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/577278/tmp/hooks/D01_modify_environment starting +debug: Running on ionos1-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Jun 6 11:11 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/577278/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/577278/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='bc0acd0c7f3748d99b06896646b16a9f' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='1787077' - PS1='# ' - PS2='> ' + INVOCATION_ID=f0f4716f07bb435381fb2fa4bc786550 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=577278 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.jNHDRA7Q/pbuilderrc_9aJ1 --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.jNHDRA7Q/b1 --logfile b1/build.log metastudent-data_2.0.1-8.dsc' - SUDO_GID='111' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://213.165.73.152:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.jNHDRA7Q/pbuilderrc_EaGI --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.jNHDRA7Q/b2 --logfile b2/build.log metastudent-data_2.0.1-8.dsc' + SUDO_GID=110 + SUDO_UID=105 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://46.16.76.132:3128 I: uname -a - Linux ionos15-amd64 6.12.22+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.22-1~bpo12+1 (2025-04-25) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-37-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.140-1 (2025-05-22) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 May 12 2025 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/1787077/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 May 12 19:25 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/577278/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -167,7 +199,7 @@ Get: 54 http://deb.debian.org/debian unstable/main amd64 ncbi-data all 6.1.20170106+dfsg2-6 [3541 kB] Get: 55 http://deb.debian.org/debian unstable/main amd64 ncbi-blast+ amd64 2.16.0+ds-7 [16.0 MB] Get: 56 http://deb.debian.org/debian unstable/main amd64 ncbi-blast+-legacy all 2.16.0+ds-7 [12.6 kB] -Fetched 40.0 MB in 1s (44.4 MB/s) +Fetched 40.0 MB in 1s (65.9 MB/s) Preconfiguring packages ... Selecting previously unselected package libpython3.13-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19850 files and directories currently installed.) @@ -366,8 +398,8 @@ Setting up tzdata (2025b-3) ... Current default time zone: 'Etc/UTC' -Local time is now: Thu Jul 9 17:26:49 UTC 2026. -Universal Time is now: Thu Jul 9 17:26:49 UTC 2026. +Local time is now: Fri Jun 6 11:12:07 UTC 2025. +Universal Time is now: Fri Jun 6 11:12:07 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20240727.1) ... @@ -420,7 +452,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/metastudent-data-2.0.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../metastudent-data_2.0.1-8_source.changes +I: user script /srv/workspace/pbuilder/577278/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/577278/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/metastudent-data-2.0.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../metastudent-data_2.0.1-8_source.changes dpkg-buildpackage: info: source package metastudent-data dpkg-buildpackage: info: source version 2.0.1-8 dpkg-buildpackage: info: source distribution unstable @@ -454,7 +490,7 @@ configure: creating ./config.status config.status: creating Makefile dh_auto_build - make -j42 + make -j40 make[1]: Entering directory '/build/reproducible-path/metastudent-data-2.0.1' mkdir -p dataset_201401/BPO/ && \ makeblastdb -dbtype prot -in "dataset_201401/BPO/goasp.fasta" -out "dataset_201401/BPO/goasp.fasta" -blastdb_version 4 @@ -464,35 +500,35 @@ makeblastdb -dbtype prot -in "dataset_201401/CCO/goasp.fasta" -out "dataset_201401/CCO/goasp.fasta" -blastdb_version 4 -Building a new DB, current time: 07/09/2026 17:27:50 +Building a new DB, current time: 06/06/2025 11:12:18 -Building a new DB, current time: 07/09/2026 17:27:50 -New DB name: /build/reproducible-path/metastudent-data-2.0.1/dataset_201401/CCO/goasp.fasta +Building a new DB, current time: 06/06/2025 11:12:18 + + +Building a new DB, current time: 06/06/2025 11:12:18 New DB name: /build/reproducible-path/metastudent-data-2.0.1/dataset_201401/MFO/goasp.fasta -New DB title: dataset_201401/CCO/goasp.fasta +New DB name: /build/reproducible-path/metastudent-data-2.0.1/dataset_201401/CCO/goasp.fasta New DB title: dataset_201401/MFO/goasp.fasta +New DB title: dataset_201401/CCO/goasp.fasta Sequence type: Protein Sequence type: Protein -Keep MBits: T -Maximum file size: 3000000000B -Keep MBits: T -Maximum file size: 3000000000B - - -Building a new DB, current time: 07/09/2026 17:27:50 New DB name: /build/reproducible-path/metastudent-data-2.0.1/dataset_201401/BPO/goasp.fasta New DB title: dataset_201401/BPO/goasp.fasta Sequence type: Protein Keep MBits: T +Keep MBits: T +Maximum file size: 3000000000B +Maximum file size: 3000000000B +Keep MBits: T Maximum file size: 3000000000B -Adding sequences from FASTA; added 392822 sequences in 31.9786 seconds. +Adding sequences from FASTA; added 392822 sequences in 10.2936 seconds. -Adding sequences from FASTA; added 459503 sequences in 38.8805 seconds. +Adding sequences from FASTA; added 486000 sequences in 12.3009 seconds. -Adding sequences from FASTA; added 486000 sequences in 39.086 seconds. +Adding sequences from FASTA; added 459503 sequences in 12.3765 seconds. make[1]: Leaving directory '/build/reproducible-path/metastudent-data-2.0.1' @@ -500,7 +536,7 @@ create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/metastudent-data/ - make -j42 install DESTDIR=/build/reproducible-path/metastudent-data-2.0.1/debian/metastudent-data AM_UPDATE_INFO_DIR=no + make -j40 install DESTDIR=/build/reproducible-path/metastudent-data-2.0.1/debian/metastudent-data AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/reproducible-path/metastudent-data-2.0.1' make[2]: Entering directory '/build/reproducible-path/metastudent-data-2.0.1' make[2]: Nothing to be done for 'install-exec-am'. @@ -532,12 +568,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/577278/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/577278/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/1787077 and its subdirectories -I: Current time: Thu Jul 9 05:34:00 -12 2026 -I: pbuilder-time-stamp: 1783618440 +I: removing directory /srv/workspace/pbuilder/577278 and its subdirectories +I: Current time: Sat Jun 7 01:13:21 +14 2025 +I: pbuilder-time-stamp: 1749208401 Compressing the 2nd log... /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/metastudent-data_2.0.1-8.diff: 69.3% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/metastudent-data_2.0.1-8.diff.gz b2/build.log: 77.7% -- replaced with stdout Compressing the 1st log... b1/build.log: 78.4% -- replaced with stdout Fri Jun 6 11:13:24 UTC 2025 I: diffoscope 297 will be used to compare the two builds: ++ date -u +%s + DIFFOSCOPE_STAMP=/var/log/reproducible-builds/diffoscope_stamp_metastudent-data_unstable_amd64_1749208404 + touch /var/log/reproducible-builds/diffoscope_stamp_metastudent-data_unstable_amd64_1749208404 + RESULT=0 + systemd-run '--description=diffoscope on metastudent-data/2.0.1-8 in unstable/amd64' --slice=rb-build-diffoscope.slice -u rb-diffoscope-amd64_4-55722 '--property=SuccessExitStatus=1 124' --user --send-sighup --pipe --wait -E TMPDIR timeout 155m nice schroot --directory /srv/reproducible-results/rbuild-debian/r-b-build.jNHDRA7Q --run-session -c jenkins-reproducible-unstable-diffoscope-e8519d83-bcaa-45aa-beef-e7aab0449bc7 -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian/r-b-build.jNHDRA7Q/dbd-tmp-e8X92Ps ; timeout 150m diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.jNHDRA7Q/metastudent-data_2.0.1-8.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.jNHDRA7Q/metastudent-data_2.0.1-8.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.jNHDRA7Q/metastudent-data_2.0.1-8.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.jNHDRA7Q/b1/metastudent-data_2.0.1-8_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.jNHDRA7Q/b2/metastudent-data_2.0.1-8_amd64.changes' + false + set +x Running as unit: rb-diffoscope-amd64_4-55722.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.jNHDRA7Q/metastudent-data_2.0.1-8.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.jNHDRA7Q/metastudent-data_2.0.1-8.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.jNHDRA7Q/metastudent-data_2.0.1-8.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.jNHDRA7Q/b1/metastudent-data_2.0.1-8_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.jNHDRA7Q/b2/metastudent-data_2.0.1-8_amd64.changes ## close_archive (total time: 0.000s) 0.000s 6 calls diffoscope.comparators.xz.XzContainer 0.000s 2 calls diffoscope.comparators.deb.DebContainer 0.000s 4 calls diffoscope.comparators.tar.TarContainer 0.000s 2 calls diffoscope.comparators.deb.DebTarContainer ## command (total time: 16.109s) 7.674s 30 calls xxd 5.358s 8 calls diff 2.990s 6 calls xz 0.044s 1 call cmp 0.044s 1 call cmp (external) 0.001s 11 calls cmp (internal) ## compare_files (cumulative) (total time: 53.786s) 12.840s 1 call abc.DotChangesFile 12.817s 1 call abc.DebFile 12.292s 2 calls abc.XzFile 9.236s 1 call abc.DebDataTarFile 6.580s 3 calls diffoscope.comparators.utils.libarchive.LibarchiveMember 0.016s 1 call abc.TarFile 0.004s 1 call abc.Md5sumsFile ## container_extract (total time: 5.752s) 2.990s 6 calls diffoscope.comparators.xz.XzContainer 2.265s 38 calls diffoscope.comparators.deb.DebTarContainer 0.494s 8 calls diffoscope.comparators.deb.DebContainer 0.002s 6 calls diffoscope.comparators.tar.TarContainer ## diff (total time: 1.885s) 1.885s 9 calls linediff ## has_same_content_as (total time: 0.045s) 0.044s 1 call abc.DebDataTarFile 0.000s 3 calls diffoscope.comparators.utils.libarchive.LibarchiveMember 0.000s 2 calls abc.TextFile 0.000s 2 calls abc.Md5sumsFile 0.000s 1 call abc.DotChangesFile 0.000s 1 call diffoscope.comparators.binary.FilesystemFile 0.000s 2 calls abc.XzFile 0.000s 1 call abc.TarFile 0.000s 1 call abc.DebFile ## main (total time: 16.320s) 16.320s 2 calls outputs 0.000s 1 call cleanup ## open_archive (total time: 0.000s) 0.000s 6 calls diffoscope.comparators.xz.XzContainer 0.000s 4 calls diffoscope.comparators.tar.TarContainer 0.000s 2 calls diffoscope.comparators.deb.DebContainer 0.000s 2 calls diffoscope.comparators.deb.DebTarContainer ## output (total time: 1.906s) 1.905s 1 call html 0.000s 1 call text 0.000s 1 call json ## recognizes (total time: 1.600s) 1.349s 12 calls diffoscope.comparators.binary.FilesystemFile 0.222s 1656 calls diffoscope.comparators.utils.libarchive.LibarchiveMember 0.017s 54 calls diffoscope.comparators.debian.DebControlMember 0.013s 264 calls diffoscope.comparators.utils.archive.ArchiveMember ## specialize (total time: 1.988s) 1.988s 13 calls specialize Finished with result: success Main processes terminated with: code=exited/status=1 Service runtime: 16.511s CPU time consumed: 44.580s Fri Jun 6 11:13:41 UTC 2025 W: Diffoscope claims the build is reproducible, but there is a diffoscope file. Please investigate. Fri Jun 6 11:13:41 UTC 2025 E: metastudent-data failed to build reproducibly in unstable on amd64. INSERT 0 1 INSERT 0 1 DELETE 1 [2025-06-06 11:13:42] INFO: Starting at 2025-06-06 11:13:42.143218 [2025-06-06 11:13:42] INFO: Generating the pages of 1 package(s) [2025-06-06 11:13:42] CRITICAL: https://tests.reproducible-builds.org/debian/unstable/amd64/metastudent-data didn't produce a buildlog, even though it has been built. [2025-06-06 11:13:42] INFO: Finished at 2025-06-06 11:13:42.431721, took: 0:00:00.288506 Fri Jun 6 11:13:42 UTC 2025 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/unstable/amd64/metastudent-data.html Fri Jun 6 11:13:42 UTC 2025 I: Removing signed metastudent-data_2.0.1-8_amd64.buildinfo.asc files: removed './b1/metastudent-data_2.0.1-8_amd64.buildinfo.asc' removed './b2/metastudent-data_2.0.1-8_amd64.buildinfo.asc' 1749208422 amd64 unstable metastudent-data Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/metastudent-data_2.0.1-8.rbuild.log: 75.7% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/metastudent-data_2.0.1-8.rbuild.log.gz [2025-06-06 11:13:42] INFO: Starting at 2025-06-06 11:13:42.681073 [2025-06-06 11:13:42] INFO: Generating the pages of 1 package(s) [2025-06-06 11:13:42] INFO: Finished at 2025-06-06 11:13:42.958545, took: 0:00:00.277477 All cleanup done. Fri Jun 6 11:13:43 UTC 2025 - total duration: 0h 12m 32s. Fri Jun 6 11:13:43 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-KRxUo4Lg, removing. Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 12min 34.064s CPU time consumed: 7.166s