Running as unit: rb-build-amd64_6-52205.service ==================================================================================== Thu Jul 31 14:26:28 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_amd64_6) on jenkins, called using "ionos5-amd64 ionos11-amd64" as arguments. Thu Jul 31 14:26:28 UTC 2025 - actually running "reproducible_build.sh" (md5sum 44ec6a3142940d5e9a7ab76543d96029) as "/tmp/jenkins-script-2BPKXWoD" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Thu Jul 31 14:26:28 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos5-amd64.debian.net is marked as down. Thu Jul 31 14:26:28 UTC 2025 - checking via ssh if ionos5-amd64.debian.net is up. removed '/tmp/read-only-fs-test-VoRkGo' Thu Jul 31 14:26:28 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos11-amd64.debian.net is marked as down. Thu Jul 31 14:26:28 UTC 2025 - checking via ssh if ionos11-amd64.debian.net is up. removed '/tmp/read-only-fs-test-zw1HFi' ok, let's check if kraken2 is building anywhere yet… ok, kraken2 is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of kraken2 in unstable on amd64 on jenkins now. 1st build will be done on ionos5-amd64.debian.net. 2nd build will be done on ionos11-amd64.debian.net. ============================================================================= Thu Jul 31 14:26:46 UTC 2025 I: starting to build kraken2/unstable/amd64 on jenkins on '2025-07-31 14:26' Thu Jul 31 14:26:46 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_6/52205/console.log 1753972006 amd64 unstable kraken2 Thu Jul 31 14:26:46 UTC 2025 I: Downloading source for unstable/kraken2=2.1.3-1 --2025-07-31 14:26:46-- http://deb.debian.org/debian/pool/main/k/kraken2/kraken2_2.1.3-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 1973 (1.9K) [text/prs.lines.tag] Saving to: ‘kraken2_2.1.3-1.dsc’ 0K . 100% 246M=0s 2025-07-31 14:26:46 (246 MB/s) - ‘kraken2_2.1.3-1.dsc’ saved [1973/1973] --2025-07-31 14:26:46-- http://deb.debian.org/debian/pool/main/k/kraken2/kraken2_2.1.3-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 1973 (1.9K) [text/prs.lines.tag] Saving to: ‘kraken2_2.1.3-1.dsc’ 0K . 100% 246M=0s 2025-07-31 14:26:46 (246 MB/s) - ‘kraken2_2.1.3-1.dsc’ saved [1973/1973] Thu Jul 31 14:26:46 UTC 2025 I: kraken2_2.1.3-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: kraken2 Binary: kraken2 Architecture: any Version: 2.1.3-1 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://www.ccb.jhu.edu/software/kraken2/ Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/kraken2 Vcs-Git: https://salsa.debian.org/med-team/kraken2.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), zlib1g-dev Package-List: kraken2 deb science optional arch=any Checksums-Sha1: a9cbabfde878a430afaa0cf5a51208ec50b89e32 218851 kraken2_2.1.3.orig.tar.gz dc6fa5becaea153b63c28b88be9aa6863c3e692f 339032 kraken2_2.1.3-1.debian.tar.xz Checksums-Sha256: 5269fa14adfb02e38c2da2e605e909a432d76c680d73e2e0e80e27ccd04d7c69 218851 kraken2_2.1.3.orig.tar.gz 41f69194a839041aa03e49541173db09bf8a48bf85254196fd58b2b556bd9b65 339032 kraken2_2.1.3-1.debian.tar.xz Files: 25c1fa9393013929ed395647ed5d1e03 218851 kraken2_2.1.3.orig.tar.gz 5b37eaf3f373c1086ddf1db83ec3d14d 339032 kraken2_2.1.3-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmVmPsURHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtH1VQ//cITNnTyWkhZ0jgOQpj05mFiPww2bD055 imBFWps8d6I53lFaAjP6X32MNL6jKKut2BuxrBYKZhpJ4DMGIhkGHuCGT3ogT8Cl uzpfTnNJKjuk5QniTruMaLggsrb4piLKNzuBvtVwyPc57uVPMK88p4JqlyfdHTEZ iSNSlJ9JkXPyuTxTYz+Uri88LPvcAHQabIUL9dtQJxZmrkHNeg7o3mV8UE7W6a6F ofwtoxidulOoUIBdSzQJKECBgfpJdKVWAieZivyWYv8zicIsjrLDUaQvCNyB4M8h 8LarFlyS/ER+PrQjE6EEr0+gOOn8Xbimw/z0LP1aAp3GSB6pAIzPdW+kNuETEDmk 44V2J4u1VknVuNDd1lb5F+HO8bZ4JO5W+ikJzEHqDv5q14HAhn9M004Nvh45zLqB oH9Q12oC/6iIRVnab6nQdDaD3YtFYi8jU0C0ziLd9scphUrhg7UQCFXoqXeyvP+U InGFzyFvXOV4OmEDkmEVBPgDkg3QgzdomDbAwJTSMysGjA6fSub+LsbBy5cRVSU/ Xhnv1NZvUQNrPTrOc5DhHm9D0XfJzfVOGRbyBEU5z0LH6yWwOHzXa2co1K398ouM gZg7YylPP0u04vDe0/YUW3GbD6cGoe0DTQMOfV+m7s8+SVxpsRPpYDpp3i71EQM5 PzuuuF2RLTI= =7UU5 -----END PGP SIGNATURE----- Thu Jul 31 14:26:46 UTC 2025 I: Checking whether the package is not for us Thu Jul 31 14:26:46 UTC 2025 I: Starting 1st build on remote node ionos5-amd64.debian.net. Thu Jul 31 14:26:46 UTC 2025 I: Preparing to do remote build '1' on ionos5-amd64.debian.net. Thu Jul 31 14:26:46 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos5-amd64.debian.net is marked as down. Thu Jul 31 14:26:46 UTC 2025 - checking via ssh if ionos5-amd64.debian.net is up. removed '/tmp/read-only-fs-test-N6KJyX' ==================================================================================== Wed Sep 2 20:49:46 UTC 2026 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos5-amd64, called using "1 kraken2 unstable /srv/reproducible-results/rbuild-debian/r-b-build.krx5luch 2.1.3-1" as arguments. Wed Sep 2 20:49:46 UTC 2026 - actually running "reproducible_build.sh" (md5sum 44ec6a3142940d5e9a7ab76543d96029) as "/tmp/jenkins-script-AuZggncb" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Wed Sep 2 20:49:46 UTC 2026 I: Downloading source for unstable/kraken2=2.1.3-1 Reading package lists... NOTICE: 'kraken2' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/kraken2.git Please use: git clone https://salsa.debian.org/med-team/kraken2.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 560 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main kraken2 2.1.3-1 (dsc) [1973 B] Get:2 http://deb.debian.org/debian unstable/main kraken2 2.1.3-1 (tar) [219 kB] Get:3 http://deb.debian.org/debian unstable/main kraken2 2.1.3-1 (diff) [339 kB] Fetched 560 kB in 0s (32.3 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'kraken2' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/kraken2.git Please use: git clone https://salsa.debian.org/med-team/kraken2.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 560 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main kraken2 2.1.3-1 (dsc) [1973 B] Get:2 http://deb.debian.org/debian unstable/main kraken2 2.1.3-1 (tar) [219 kB] Get:3 http://deb.debian.org/debian unstable/main kraken2 2.1.3-1 (diff) [339 kB] Fetched 560 kB in 0s (32.3 MB/s) Download complete and in download only mode ============================================================================= Building kraken2 in unstable on amd64 on ionos5-amd64 now. Date: Wed Sep 2 20:49:47 UTC 2026 Date UTC: Wed Sep 2 20:49:47 UTC 2026 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Wed Sep 2 08:49:47 -12 2026 I: pbuilder-time-stamp: 1788382187 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [kraken2_2.1.3-1.dsc] I: copying [./kraken2_2.1.3.orig.tar.gz] I: copying [./kraken2_2.1.3-1.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./kraken2_2.1.3-1.dsc: no acceptable signature found dpkg-source: info: extracting kraken2 in kraken2-2.1.3 dpkg-source: info: unpacking kraken2_2.1.3.orig.tar.gz dpkg-source: info: unpacking kraken2_2.1.3-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix_install.patch dpkg-source: info: applying hardening+debug_options.patch dpkg-source: info: applying fix_reading_fasta.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/268768/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='85e835789e7b4939bde3d27964b3f329' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='268768' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.krx5luch/pbuilderrc_YYeT --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.krx5luch/b1 --logfile b1/build.log kraken2_2.1.3-1.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos5-amd64 6.12.33+deb12-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.33-1~bpo12+1 (2025-07-09) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 12 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/268768/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), zlib1g-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19850 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 30 newly installed, 0 to remove and 0 not upgraded. Need to get 12.1 MB of archives. After unpacking 44.0 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.25 [25.0 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.1-2 [243 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.41-5 [94.6 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-8 [294 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.17-4 [862 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.24.2 [90.9 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-4 [539 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 22 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-2.1 [698 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.1-2 [1680 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.24.2 [919 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Fetched 12.1 MB in 3s (3963 kB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19850 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.25_all.deb ... Unpacking sensible-utils (0.0.25) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.46-5_amd64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../02-libmagic1t64_1%3a5.46-5_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.46-5_amd64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.23.1-2_amd64.deb ... Unpacking gettext-base (0.23.1-2) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../05-libuchardet0_0.0.8-1+b2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-9_amd64.deb ... Unpacking groff-base (1.23.0-9) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.41-5_amd64.deb ... Unpacking bsdextrautils (2.41-5) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../08-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.1-1_amd64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-8_amd64.deb ... Unpacking m4 (1.4.19-8) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.17-4_all.deb ... Unpacking automake (1:1.17-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.23.1-2_all.deb ... Unpacking autopoint (0.23.1-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.24.2_all.deb ... Unpacking libdebhelper-perl (13.24.2) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.5.4-4_all.deb ... Unpacking libtool (2.5.4-4) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../19-libfile-stripnondeterminism-perl_1.14.1-2_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.1-2) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../20-dh-strip-nondeterminism_1.14.1-2_all.deb ... Unpacking dh-strip-nondeterminism (1.14.1-2) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../21-libelf1t64_0.192-4_amd64.deb ... Unpacking libelf1t64:amd64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../22-dwz_0.15-1+b1_amd64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libunistring5:amd64. Preparing to unpack .../23-libunistring5_1.3-2_amd64.deb ... Unpacking libunistring5:amd64 (1.3-2) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../24-libxml2_2.12.7+dfsg+really2.9.14-2.1_amd64.deb ... Unpacking libxml2:amd64 (2.12.7+dfsg+really2.9.14-2.1) ... Selecting previously unselected package gettext. Preparing to unpack .../25-gettext_0.23.1-2_amd64.deb ... Unpacking gettext (0.23.1-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../26-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../27-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../28-debhelper_13.24.2_all.deb ... Unpacking debhelper (13.24.2) ... Selecting previously unselected package zlib1g-dev:amd64. Preparing to unpack .../29-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1+b1_amd64.deb ... Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up bsdextrautils (2.41-5) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.24.2) ... Setting up libmagic1t64:amd64 (1:5.46-5) ... Setting up gettext-base (0.23.1-2) ... Setting up m4 (1.4.19-8) ... Setting up file (1:5.46-5) ... Setting up libelf1t64:amd64 (0.192-4) ... Setting up autotools-dev (20240727.1) ... Setting up libunistring5:amd64 (1.3-2) ... Setting up autopoint (0.23.1-2) ... Setting up autoconf (2.72-3.1) ... Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.25) ... Setting up libuchardet0:amd64 (0.0.8-1+b2) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-2.1) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up gettext (0.23.1-2) ... Setting up libtool (2.5.4-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up groff-base (1.23.0-9) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.24.2) ... Processing triggers for libc-bin (2.41-11) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/kraken2-2.1.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../kraken2_2.1.3-1_source.changes dpkg-buildpackage: info: source package kraken2 dpkg-buildpackage: info: source version 2.1.3-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --sourcedirectory=src dh_auto_clean -O--sourcedirectory=src cd src && make -j42 clean make[1]: Entering directory '/build/reproducible-path/kraken2-2.1.3/src' rm -f *.o estimate_capacity build_db classify dump_table lookup_accession_numbers k2mask make[1]: Leaving directory '/build/reproducible-path/kraken2-2.1.3/src' dh_autoreconf_clean -O--sourcedirectory=src dh_clean -O--sourcedirectory=src debian/rules binary dh binary --sourcedirectory=src dh_update_autotools_config -O--sourcedirectory=src dh_autoreconf -O--sourcedirectory=src dh_auto_configure -O--sourcedirectory=src dh_auto_build -O--sourcedirectory=src cd src && make -j42 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/kraken2-2.1.3/src' g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/kraken2-2.1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -Wdate-time -D_FORTIFY_SOURCE=2 -c -o estimate_capacity.o estimate_capacity.cc g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/kraken2-2.1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -Wdate-time -D_FORTIFY_SOURCE=2 -c -o seqreader.o seqreader.cc g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/kraken2-2.1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mmscanner.o mmscanner.cc g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/kraken2-2.1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -Wdate-time -D_FORTIFY_SOURCE=2 -c -o omp_hack.o omp_hack.cc g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/kraken2-2.1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -Wdate-time -D_FORTIFY_SOURCE=2 -c -o utilities.o utilities.cc g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/kraken2-2.1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -Wdate-time -D_FORTIFY_SOURCE=2 -c -o build_db.o build_db.cc g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/kraken2-2.1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mmap_file.o mmap_file.cc g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/kraken2-2.1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -Wdate-time -D_FORTIFY_SOURCE=2 -c -o compact_hash.o compact_hash.cc g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/kraken2-2.1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -Wdate-time -D_FORTIFY_SOURCE=2 -c -o taxonomy.o taxonomy.cc g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/kraken2-2.1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -Wdate-time -D_FORTIFY_SOURCE=2 -c -o classify.o classify.cc g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/kraken2-2.1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -Wdate-time -D_FORTIFY_SOURCE=2 -c -o reports.o reports.cc g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/kraken2-2.1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -Wdate-time -D_FORTIFY_SOURCE=2 -c -o hyperloglogplus.o hyperloglogplus.cc g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/kraken2-2.1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -Wdate-time -D_FORTIFY_SOURCE=2 -c -o aa_translate.o aa_translate.cc g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/kraken2-2.1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -Wdate-time -D_FORTIFY_SOURCE=2 -c -o dump_table.o dump_table.cc g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/kraken2-2.1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -Wdate-time -D_FORTIFY_SOURCE=2 -c -o lookup_accession_numbers.o lookup_accession_numbers.cc g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/kraken2-2.1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -Wdate-time -D_FORTIFY_SOURCE=2 -c -o k2mask.o k2mask.cc g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/kraken2-2.1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -o estimate_capacity estimate_capacity.o seqreader.o mmscanner.o omp_hack.o utilities.o -Wl,-z,relro -Wl,-z,now g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/kraken2-2.1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -o lookup_accession_numbers lookup_accession_numbers.o mmap_file.o omp_hack.o utilities.o -Wl,-z,relro -Wl,-z,now g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/kraken2-2.1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -o build_db build_db.o mmap_file.o compact_hash.o taxonomy.o seqreader.o mmscanner.o omp_hack.o utilities.o -Wl,-z,relro -Wl,-z,now g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/kraken2-2.1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -o k2mask k2mask.o seqreader.o -lz -pthread g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/kraken2-2.1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -o dump_table dump_table.o mmap_file.o compact_hash.o omp_hack.o taxonomy.o reports.o hyperloglogplus.o -Wl,-z,relro -Wl,-z,now g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/kraken2-2.1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -o classify classify.o reports.o hyperloglogplus.o mmap_file.o compact_hash.o taxonomy.o seqreader.o mmscanner.o omp_hack.o aa_translate.o utilities.o -Wl,-z,relro -Wl,-z,now make[1]: Leaving directory '/build/reproducible-path/kraken2-2.1.3/src' dh_auto_test -O--sourcedirectory=src create-stamp debian/debhelper-build-stamp dh_testroot -O--sourcedirectory=src dh_prep -O--sourcedirectory=src dh_installdirs -O--sourcedirectory=src debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/kraken2-2.1.3' dh_auto_install -- KRAKEN2_DIR=/build/reproducible-path/kraken2-2.1.3/debian/kraken2/usr/lib/kraken2 cd src && make -j42 install DESTDIR=/build/reproducible-path/kraken2-2.1.3/debian/kraken2 AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" KRAKEN2_DIR=/build/reproducible-path/kraken2-2.1.3/debian/kraken2/usr/lib/kraken2 make[2]: Entering directory '/build/reproducible-path/kraken2-2.1.3/src' cp estimate_capacity build_db classify dump_table lookup_accession_numbers k2mask "/build/reproducible-path/kraken2-2.1.3/debian/kraken2/usr/lib/kraken2/" make[2]: Leaving directory '/build/reproducible-path/kraken2-2.1.3/src' ./install_kraken2.sh /build/reproducible-path/kraken2-2.1.3/debian/kraken2/usr/lib/kraken2 make[2]: Entering directory '/build/reproducible-path/kraken2-2.1.3/src' cp estimate_capacity build_db classify dump_table lookup_accession_numbers k2mask "/build/reproducible-path/kraken2-2.1.3/debian/kraken2/usr/lib/kraken2/" make[2]: Leaving directory '/build/reproducible-path/kraken2-2.1.3/src' Kraken 2 installation complete. To make things easier for you, you may want to copy/symlink the following files into a directory in your PATH: /build/reproducible-path/kraken2-2.1.3/debian/kraken2/usr/lib/kraken2/kraken2 /build/reproducible-path/kraken2-2.1.3/debian/kraken2/usr/lib/kraken2/kraken2-build /build/reproducible-path/kraken2-2.1.3/debian/kraken2/usr/lib/kraken2/kraken2-inspect make[1]: Leaving directory '/build/reproducible-path/kraken2-2.1.3' debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/kraken2-2.1.3' dh_install for pl in `grep -Rl '#![[:space:]]*/usr/bin/env[[:space:]]\+perl' debian/*/usr/*` ; do \ sed -i '1s?^#![[:space:]]*/usr/bin/env[[:space:]]\+perl?#!/usr/bin/perl?' ${pl} ; \ done make[1]: Leaving directory '/build/reproducible-path/kraken2-2.1.3' dh_installdocs -O--sourcedirectory=src dh_installchangelogs -O--sourcedirectory=src dh_installman -O--sourcedirectory=src dh_installsystemduser -O--sourcedirectory=src dh_perl -O--sourcedirectory=src debian/rules override_dh_link make[1]: Entering directory '/build/reproducible-path/kraken2-2.1.3' dh_link for file in /build/reproducible-path/kraken2-2.1.3/debian/kraken2/usr/lib/kraken2/kraken* ; do \ if ! echo ${file} | grep -q '\.pm$' ; then \ ln -s ../lib/kraken2/`basename ${file}` /build/reproducible-path/kraken2-2.1.3/debian/kraken2/usr/bin/`basename ${file}` ; \ fi \ done make[1]: Leaving directory '/build/reproducible-path/kraken2-2.1.3' dh_strip_nondeterminism -O--sourcedirectory=src dh_compress -O--sourcedirectory=src dh_fixperms -O--sourcedirectory=src dh_missing -O--sourcedirectory=src dh_dwz -a -O--sourcedirectory=src dh_strip -a -O--sourcedirectory=src dh_makeshlibs -a -O--sourcedirectory=src dh_shlibdeps -a -O--sourcedirectory=src dh_installdeb -O--sourcedirectory=src dh_gencontrol -O--sourcedirectory=src dpkg-gencontrol: warning: package kraken2: substitution variable ${perl:Depends} unused, but is defined dpkg-gencontrol: warning: package kraken2: substitution variable ${perl:Depends} unused, but is defined dh_md5sums -O--sourcedirectory=src dh_builddeb -O--sourcedirectory=src dpkg-deb: building package 'kraken2' in '../kraken2_2.1.3-1_amd64.deb'. dpkg-deb: building package 'kraken2-dbgsym' in '../kraken2-dbgsym_2.1.3-1_amd64.deb'. dpkg-genbuildinfo --build=binary -O../kraken2_2.1.3-1_amd64.buildinfo dpkg-genchanges --build=binary -O../kraken2_2.1.3-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/268768 and its subdirectories I: Current time: Wed Sep 2 08:50:44 -12 2026 I: pbuilder-time-stamp: 1788382244 Wed Sep 2 20:50:44 UTC 2026 I: Signing ./b1/kraken2_2.1.3-1_amd64.buildinfo as kraken2_2.1.3-1_amd64.buildinfo.asc Wed Sep 2 20:50:44 UTC 2026 I: Signed ./b1/kraken2_2.1.3-1_amd64.buildinfo as ./b1/kraken2_2.1.3-1_amd64.buildinfo.asc Wed Sep 2 20:50:44 UTC 2026 - build #1 for kraken2/unstable/amd64 on ionos5-amd64 done. Starting cleanup. All cleanup done. Wed Sep 2 20:50:44 UTC 2026 - reproducible_build.sh stopped running as /tmp/jenkins-script-AuZggncb, removing. /srv/reproducible-results/rbuild-debian/r-b-build.krx5luch: total 16 drwxr-xr-x 2 jenkins jenkins 4096 Jul 31 14:27 b1 drwxr-xr-x 2 jenkins jenkins 4096 Jul 31 14:26 b2 -rw-r--r-- 1 jenkins jenkins 1973 Nov 28 2023 kraken2_2.1.3-1.dsc -rw------- 1 jenkins jenkins 3072 Jul 31 14:26 rbuildlog.3UDBSZg /srv/reproducible-results/rbuild-debian/r-b-build.krx5luch/b1: total 3912 -rw-r--r-- 1 jenkins jenkins 28126 Jul 31 14:27 build.log -rw-r--r-- 1 jenkins jenkins 2513384 Jul 31 14:27 kraken2-dbgsym_2.1.3-1_amd64.deb -rw-r--r-- 1 jenkins jenkins 339032 Jul 31 14:27 kraken2_2.1.3-1.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 1973 Jul 31 14:27 kraken2_2.1.3-1.dsc -rw-r--r-- 1 jenkins jenkins 4927 Jul 31 14:27 kraken2_2.1.3-1_amd64.buildinfo -rw-r--r-- 1 jenkins jenkins 5809 Jul 31 14:27 kraken2_2.1.3-1_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1419 Jul 31 14:27 kraken2_2.1.3-1_amd64.changes -rw-r--r-- 1 jenkins jenkins 870928 Jul 31 14:27 kraken2_2.1.3-1_amd64.deb -rw-r--r-- 1 jenkins jenkins 1528 Jul 31 14:27 kraken2_2.1.3-1_source.changes -rw-r--r-- 1 jenkins jenkins 218851 Jul 31 14:27 kraken2_2.1.3.orig.tar.gz /srv/reproducible-results/rbuild-debian/r-b-build.krx5luch/b2: total 0 Thu Jul 31 14:27:44 UTC 2025 I: Deleting $TMPDIR on ionos5-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed Sep 2 08:49:47 -12 2026 I: pbuilder-time-stamp: 1788382187 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [kraken2_2.1.3-1.dsc] I: copying [./kraken2_2.1.3.orig.tar.gz] I: copying [./kraken2_2.1.3-1.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./kraken2_2.1.3-1.dsc: no acceptable signature found dpkg-source: info: extracting kraken2 in kraken2-2.1.3 dpkg-source: info: unpacking kraken2_2.1.3.orig.tar.gz dpkg-source: info: unpacking kraken2_2.1.3-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix_install.patch dpkg-source: info: applying hardening+debug_options.patch dpkg-source: info: applying fix_reading_fasta.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/268768/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='85e835789e7b4939bde3d27964b3f329' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='268768' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.krx5luch/pbuilderrc_YYeT --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.krx5luch/b1 --logfile b1/build.log kraken2_2.1.3-1.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos5-amd64 6.12.33+deb12-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.33-1~bpo12+1 (2025-07-09) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 12 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/268768/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), zlib1g-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19850 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 30 newly installed, 0 to remove and 0 not upgraded. Need to get 12.1 MB of archives. After unpacking 44.0 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.25 [25.0 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.1-2 [243 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.41-5 [94.6 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-8 [294 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.17-4 [862 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.24.2 [90.9 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-4 [539 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 22 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-2.1 [698 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.1-2 [1680 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.24.2 [919 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Fetched 12.1 MB in 3s (3963 kB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19850 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.25_all.deb ... Unpacking sensible-utils (0.0.25) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.46-5_amd64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../02-libmagic1t64_1%3a5.46-5_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.46-5_amd64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.23.1-2_amd64.deb ... Unpacking gettext-base (0.23.1-2) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../05-libuchardet0_0.0.8-1+b2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-9_amd64.deb ... Unpacking groff-base (1.23.0-9) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.41-5_amd64.deb ... Unpacking bsdextrautils (2.41-5) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../08-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.1-1_amd64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-8_amd64.deb ... Unpacking m4 (1.4.19-8) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.17-4_all.deb ... Unpacking automake (1:1.17-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.23.1-2_all.deb ... Unpacking autopoint (0.23.1-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.24.2_all.deb ... Unpacking libdebhelper-perl (13.24.2) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.5.4-4_all.deb ... Unpacking libtool (2.5.4-4) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../19-libfile-stripnondeterminism-perl_1.14.1-2_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.1-2) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../20-dh-strip-nondeterminism_1.14.1-2_all.deb ... Unpacking dh-strip-nondeterminism (1.14.1-2) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../21-libelf1t64_0.192-4_amd64.deb ... Unpacking libelf1t64:amd64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../22-dwz_0.15-1+b1_amd64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libunistring5:amd64. Preparing to unpack .../23-libunistring5_1.3-2_amd64.deb ... Unpacking libunistring5:amd64 (1.3-2) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../24-libxml2_2.12.7+dfsg+really2.9.14-2.1_amd64.deb ... Unpacking libxml2:amd64 (2.12.7+dfsg+really2.9.14-2.1) ... Selecting previously unselected package gettext. Preparing to unpack .../25-gettext_0.23.1-2_amd64.deb ... Unpacking gettext (0.23.1-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../26-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../27-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../28-debhelper_13.24.2_all.deb ... Unpacking debhelper (13.24.2) ... Selecting previously unselected package zlib1g-dev:amd64. Preparing to unpack .../29-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1+b1_amd64.deb ... Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up bsdextrautils (2.41-5) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.24.2) ... Setting up libmagic1t64:amd64 (1:5.46-5) ... Setting up gettext-base (0.23.1-2) ... Setting up m4 (1.4.19-8) ... Setting up file (1:5.46-5) ... Setting up libelf1t64:amd64 (0.192-4) ... Setting up autotools-dev (20240727.1) ... Setting up libunistring5:amd64 (1.3-2) ... Setting up autopoint (0.23.1-2) ... Setting up autoconf (2.72-3.1) ... Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.25) ... Setting up libuchardet0:amd64 (0.0.8-1+b2) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-2.1) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up gettext (0.23.1-2) ... Setting up libtool (2.5.4-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up groff-base (1.23.0-9) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.24.2) ... Processing triggers for libc-bin (2.41-11) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/kraken2-2.1.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../kraken2_2.1.3-1_source.changes dpkg-buildpackage: info: source package kraken2 dpkg-buildpackage: info: source version 2.1.3-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --sourcedirectory=src dh_auto_clean -O--sourcedirectory=src cd src && make -j42 clean make[1]: Entering directory '/build/reproducible-path/kraken2-2.1.3/src' rm -f *.o estimate_capacity build_db classify dump_table lookup_accession_numbers k2mask make[1]: Leaving directory '/build/reproducible-path/kraken2-2.1.3/src' dh_autoreconf_clean -O--sourcedirectory=src dh_clean -O--sourcedirectory=src debian/rules binary dh binary --sourcedirectory=src dh_update_autotools_config -O--sourcedirectory=src dh_autoreconf -O--sourcedirectory=src dh_auto_configure -O--sourcedirectory=src dh_auto_build -O--sourcedirectory=src cd src && make -j42 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/kraken2-2.1.3/src' g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/kraken2-2.1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -Wdate-time -D_FORTIFY_SOURCE=2 -c -o estimate_capacity.o estimate_capacity.cc g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/kraken2-2.1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -Wdate-time -D_FORTIFY_SOURCE=2 -c -o seqreader.o seqreader.cc g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/kraken2-2.1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mmscanner.o mmscanner.cc g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/kraken2-2.1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -Wdate-time -D_FORTIFY_SOURCE=2 -c -o omp_hack.o omp_hack.cc g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/kraken2-2.1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -Wdate-time -D_FORTIFY_SOURCE=2 -c -o utilities.o utilities.cc g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/kraken2-2.1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -Wdate-time -D_FORTIFY_SOURCE=2 -c -o build_db.o build_db.cc g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/kraken2-2.1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mmap_file.o mmap_file.cc g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/kraken2-2.1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -Wdate-time -D_FORTIFY_SOURCE=2 -c -o compact_hash.o compact_hash.cc g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/kraken2-2.1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -Wdate-time -D_FORTIFY_SOURCE=2 -c -o taxonomy.o taxonomy.cc g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/kraken2-2.1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -Wdate-time -D_FORTIFY_SOURCE=2 -c -o classify.o classify.cc g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/kraken2-2.1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -Wdate-time -D_FORTIFY_SOURCE=2 -c -o reports.o reports.cc g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/kraken2-2.1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -Wdate-time -D_FORTIFY_SOURCE=2 -c -o hyperloglogplus.o hyperloglogplus.cc g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/kraken2-2.1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -Wdate-time -D_FORTIFY_SOURCE=2 -c -o aa_translate.o aa_translate.cc g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/kraken2-2.1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -Wdate-time -D_FORTIFY_SOURCE=2 -c -o dump_table.o dump_table.cc g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/kraken2-2.1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -Wdate-time -D_FORTIFY_SOURCE=2 -c -o lookup_accession_numbers.o lookup_accession_numbers.cc g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/kraken2-2.1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -Wdate-time -D_FORTIFY_SOURCE=2 -c -o k2mask.o k2mask.cc g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/kraken2-2.1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -o estimate_capacity estimate_capacity.o seqreader.o mmscanner.o omp_hack.o utilities.o -Wl,-z,relro -Wl,-z,now g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/kraken2-2.1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -o lookup_accession_numbers lookup_accession_numbers.o mmap_file.o omp_hack.o utilities.o -Wl,-z,relro -Wl,-z,now g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/kraken2-2.1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -o build_db build_db.o mmap_file.o compact_hash.o taxonomy.o seqreader.o mmscanner.o omp_hack.o utilities.o -Wl,-z,relro -Wl,-z,now g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/kraken2-2.1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -o k2mask k2mask.o seqreader.o -lz -pthread g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/kraken2-2.1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -o dump_table dump_table.o mmap_file.o compact_hash.o omp_hack.o taxonomy.o reports.o hyperloglogplus.o -Wl,-z,relro -Wl,-z,now g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/kraken2-2.1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -o classify classify.o reports.o hyperloglogplus.o mmap_file.o compact_hash.o taxonomy.o seqreader.o mmscanner.o omp_hack.o aa_translate.o utilities.o -Wl,-z,relro -Wl,-z,now make[1]: Leaving directory '/build/reproducible-path/kraken2-2.1.3/src' dh_auto_test -O--sourcedirectory=src create-stamp debian/debhelper-build-stamp dh_testroot -O--sourcedirectory=src dh_prep -O--sourcedirectory=src dh_installdirs -O--sourcedirectory=src debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/kraken2-2.1.3' dh_auto_install -- KRAKEN2_DIR=/build/reproducible-path/kraken2-2.1.3/debian/kraken2/usr/lib/kraken2 cd src && make -j42 install DESTDIR=/build/reproducible-path/kraken2-2.1.3/debian/kraken2 AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" KRAKEN2_DIR=/build/reproducible-path/kraken2-2.1.3/debian/kraken2/usr/lib/kraken2 make[2]: Entering directory '/build/reproducible-path/kraken2-2.1.3/src' cp estimate_capacity build_db classify dump_table lookup_accession_numbers k2mask "/build/reproducible-path/kraken2-2.1.3/debian/kraken2/usr/lib/kraken2/" make[2]: Leaving directory '/build/reproducible-path/kraken2-2.1.3/src' ./install_kraken2.sh /build/reproducible-path/kraken2-2.1.3/debian/kraken2/usr/lib/kraken2 make[2]: Entering directory '/build/reproducible-path/kraken2-2.1.3/src' cp estimate_capacity build_db classify dump_table lookup_accession_numbers k2mask "/build/reproducible-path/kraken2-2.1.3/debian/kraken2/usr/lib/kraken2/" make[2]: Leaving directory '/build/reproducible-path/kraken2-2.1.3/src' Kraken 2 installation complete. To make things easier for you, you may want to copy/symlink the following files into a directory in your PATH: /build/reproducible-path/kraken2-2.1.3/debian/kraken2/usr/lib/kraken2/kraken2 /build/reproducible-path/kraken2-2.1.3/debian/kraken2/usr/lib/kraken2/kraken2-build /build/reproducible-path/kraken2-2.1.3/debian/kraken2/usr/lib/kraken2/kraken2-inspect make[1]: Leaving directory '/build/reproducible-path/kraken2-2.1.3' debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/kraken2-2.1.3' dh_install for pl in `grep -Rl '#![[:space:]]*/usr/bin/env[[:space:]]\+perl' debian/*/usr/*` ; do \ sed -i '1s?^#![[:space:]]*/usr/bin/env[[:space:]]\+perl?#!/usr/bin/perl?' ${pl} ; \ done make[1]: Leaving directory '/build/reproducible-path/kraken2-2.1.3' dh_installdocs -O--sourcedirectory=src dh_installchangelogs -O--sourcedirectory=src dh_installman -O--sourcedirectory=src dh_installsystemduser -O--sourcedirectory=src dh_perl -O--sourcedirectory=src debian/rules override_dh_link make[1]: Entering directory '/build/reproducible-path/kraken2-2.1.3' dh_link for file in /build/reproducible-path/kraken2-2.1.3/debian/kraken2/usr/lib/kraken2/kraken* ; do \ if ! echo ${file} | grep -q '\.pm$' ; then \ ln -s ../lib/kraken2/`basename ${file}` /build/reproducible-path/kraken2-2.1.3/debian/kraken2/usr/bin/`basename ${file}` ; \ fi \ done make[1]: Leaving directory '/build/reproducible-path/kraken2-2.1.3' dh_strip_nondeterminism -O--sourcedirectory=src dh_compress -O--sourcedirectory=src dh_fixperms -O--sourcedirectory=src dh_missing -O--sourcedirectory=src dh_dwz -a -O--sourcedirectory=src dh_strip -a -O--sourcedirectory=src dh_makeshlibs -a -O--sourcedirectory=src dh_shlibdeps -a -O--sourcedirectory=src dh_installdeb -O--sourcedirectory=src dh_gencontrol -O--sourcedirectory=src dpkg-gencontrol: warning: package kraken2: substitution variable ${perl:Depends} unused, but is defined dpkg-gencontrol: warning: package kraken2: substitution variable ${perl:Depends} unused, but is defined dh_md5sums -O--sourcedirectory=src dh_builddeb -O--sourcedirectory=src dpkg-deb: building package 'kraken2' in '../kraken2_2.1.3-1_amd64.deb'. dpkg-deb: building package 'kraken2-dbgsym' in '../kraken2-dbgsym_2.1.3-1_amd64.deb'. dpkg-genbuildinfo --build=binary -O../kraken2_2.1.3-1_amd64.buildinfo dpkg-genchanges --build=binary -O../kraken2_2.1.3-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/268768 and its subdirectories I: Current time: Wed Sep 2 08:50:44 -12 2026 I: pbuilder-time-stamp: 1788382244 Thu Jul 31 14:27:45 UTC 2025 I: 1st build successful. Starting 2nd build on remote node ionos11-amd64.debian.net. Thu Jul 31 14:27:45 UTC 2025 I: Preparing to do remote build '2' on ionos11-amd64.debian.net. Thu Jul 31 14:27:45 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos11-amd64.debian.net is marked as down. Thu Jul 31 14:27:45 UTC 2025 - checking via ssh if ionos11-amd64.debian.net is up. removed '/tmp/read-only-fs-test-50ROMX' ==================================================================================== Thu Jul 31 14:27:45 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos11-amd64, called using "2 kraken2 unstable /srv/reproducible-results/rbuild-debian/r-b-build.krx5luch 2.1.3-1" as arguments. Thu Jul 31 14:27:45 UTC 2025 - actually running "reproducible_build.sh" (md5sum 44ec6a3142940d5e9a7ab76543d96029) as "/tmp/jenkins-script-d578IiDJ" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Thu Jul 31 14:27:45 UTC 2025 I: Downloading source for unstable/kraken2=2.1.3-1 Reading package lists... NOTICE: 'kraken2' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/kraken2.git Please use: git clone https://salsa.debian.org/med-team/kraken2.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 560 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main kraken2 2.1.3-1 (dsc) [1973 B] Get:2 http://deb.debian.org/debian unstable/main kraken2 2.1.3-1 (tar) [219 kB] Get:3 http://deb.debian.org/debian unstable/main kraken2 2.1.3-1 (diff) [339 kB] Fetched 560 kB in 0s (40.0 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'kraken2' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/kraken2.git Please use: git clone https://salsa.debian.org/med-team/kraken2.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 560 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main kraken2 2.1.3-1 (dsc) [1973 B] Get:2 http://deb.debian.org/debian unstable/main kraken2 2.1.3-1 (tar) [219 kB] Get:3 http://deb.debian.org/debian unstable/main kraken2 2.1.3-1 (diff) [339 kB] Fetched 560 kB in 0s (40.0 MB/s) Download complete and in download only mode ============================================================================= Re-Building kraken2 in unstable on amd64 on ionos11-amd64 now. Date: Thu Jul 31 14:27:46 UTC 2025 Date UTC: Thu Jul 31 14:27:46 UTC 2025 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.krx5luch + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.krx5luch/pbuilderrc_o4SE + case ${ARCH} in + case $ARCH in + locale=et_EE + language=et + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' kraken2 = debian-installer -o kraken2 = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' kraken2 = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.krx5luch/pbuilderrc_o4SE --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.krx5luch/b2 --logfile b2/build.log kraken2_2.1.3-1.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Fri Aug 1 04:27:46 +14 2025 I: pbuilder-time-stamp: 1753972066 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [kraken2_2.1.3-1.dsc] I: copying [./kraken2_2.1.3.orig.tar.gz] I: copying [./kraken2_2.1.3-1.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./kraken2_2.1.3-1.dsc: no acceptable signature found dpkg-source: info: extracting kraken2 in kraken2-2.1.3 dpkg-source: info: unpacking kraken2_2.1.3.orig.tar.gz dpkg-source: info: unpacking kraken2_2.1.3-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix_install.patch dpkg-source: info: applying hardening+debug_options.patch dpkg-source: info: applying fix_reading_fasta.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/230066/tmp/hooks/D01_modify_environment starting debug: Running on ionos11-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Jul 31 14:27 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/230066/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/230066/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.2.37(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' DIRSTACK=() DISTRIBUTION=unstable EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=ff4fb0971db94e698c88acd864a45217 LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=230066 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.krx5luch/pbuilderrc_o4SE --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.krx5luch/b2 --logfile b2/build.log kraken2_2.1.3-1.dsc' SUDO_GID=111 SUDO_UID=106 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://46.16.76.132:3128 I: uname -a Linux i-capture-the-hostname 6.1.0-37-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.140-1 (2025-05-22) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 12 19:25 /bin -> usr/bin I: user script /srv/workspace/pbuilder/230066/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), zlib1g-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19850 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 30 newly installed, 0 to remove and 0 not upgraded. Need to get 12.1 MB of archives. After unpacking 44.0 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.25 [25.0 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.1-2 [243 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.41-5 [94.6 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-8 [294 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.17-4 [862 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.24.2 [90.9 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-4 [539 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 22 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-2.1 [698 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.1-2 [1680 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.24.2 [919 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Fetched 12.1 MB in 3s (3611 kB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19850 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.25_all.deb ... Unpacking sensible-utils (0.0.25) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.46-5_amd64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../02-libmagic1t64_1%3a5.46-5_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.46-5_amd64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.23.1-2_amd64.deb ... Unpacking gettext-base (0.23.1-2) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../05-libuchardet0_0.0.8-1+b2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-9_amd64.deb ... Unpacking groff-base (1.23.0-9) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.41-5_amd64.deb ... Unpacking bsdextrautils (2.41-5) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../08-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.1-1_amd64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-8_amd64.deb ... Unpacking m4 (1.4.19-8) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.17-4_all.deb ... Unpacking automake (1:1.17-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.23.1-2_all.deb ... Unpacking autopoint (0.23.1-2) ... Selecting previously unselected package libdebhelper-perl. 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Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../21-libelf1t64_0.192-4_amd64.deb ... Unpacking libelf1t64:amd64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../22-dwz_0.15-1+b1_amd64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libunistring5:amd64. Preparing to unpack .../23-libunistring5_1.3-2_amd64.deb ... Unpacking libunistring5:amd64 (1.3-2) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../24-libxml2_2.12.7+dfsg+really2.9.14-2.1_amd64.deb ... Unpacking libxml2:amd64 (2.12.7+dfsg+really2.9.14-2.1) ... Selecting previously unselected package gettext. Preparing to unpack .../25-gettext_0.23.1-2_amd64.deb ... Unpacking gettext (0.23.1-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../26-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../27-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../28-debhelper_13.24.2_all.deb ... Unpacking debhelper (13.24.2) ... Selecting previously unselected package zlib1g-dev:amd64. Preparing to unpack .../29-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1+b1_amd64.deb ... Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up bsdextrautils (2.41-5) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.24.2) ... Setting up libmagic1t64:amd64 (1:5.46-5) ... Setting up gettext-base (0.23.1-2) ... Setting up m4 (1.4.19-8) ... Setting up file (1:5.46-5) ... Setting up libelf1t64:amd64 (0.192-4) ... Setting up autotools-dev (20240727.1) ... Setting up libunistring5:amd64 (1.3-2) ... Setting up autopoint (0.23.1-2) ... Setting up autoconf (2.72-3.1) ... Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.25) ... Setting up libuchardet0:amd64 (0.0.8-1+b2) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-2.1) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up gettext (0.23.1-2) ... Setting up libtool (2.5.4-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up groff-base (1.23.0-9) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.24.2) ... Processing triggers for libc-bin (2.41-11) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/230066/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for unstable I: user script /srv/workspace/pbuilder/230066/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/kraken2-2.1.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../kraken2_2.1.3-1_source.changes dpkg-buildpackage: info: source package kraken2 dpkg-buildpackage: info: source version 2.1.3-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --sourcedirectory=src dh_auto_clean -O--sourcedirectory=src cd src && make -j40 clean make[1]: Entering directory '/build/reproducible-path/kraken2-2.1.3/src' rm -f *.o estimate_capacity build_db classify dump_table lookup_accession_numbers k2mask make[1]: Leaving directory '/build/reproducible-path/kraken2-2.1.3/src' dh_autoreconf_clean -O--sourcedirectory=src dh_clean -O--sourcedirectory=src debian/rules binary dh binary --sourcedirectory=src dh_update_autotools_config -O--sourcedirectory=src dh_autoreconf -O--sourcedirectory=src dh_auto_configure -O--sourcedirectory=src dh_auto_build -O--sourcedirectory=src cd src && make -j40 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/kraken2-2.1.3/src' g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/kraken2-2.1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -Wdate-time -D_FORTIFY_SOURCE=2 -c -o estimate_capacity.o estimate_capacity.cc g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/kraken2-2.1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -Wdate-time -D_FORTIFY_SOURCE=2 -c -o seqreader.o seqreader.cc g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/kraken2-2.1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mmscanner.o mmscanner.cc g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/kraken2-2.1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -Wdate-time -D_FORTIFY_SOURCE=2 -c -o omp_hack.o omp_hack.cc g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/kraken2-2.1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -Wdate-time -D_FORTIFY_SOURCE=2 -c -o utilities.o utilities.cc g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/kraken2-2.1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -Wdate-time -D_FORTIFY_SOURCE=2 -c -o build_db.o build_db.cc g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/kraken2-2.1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mmap_file.o mmap_file.cc g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/kraken2-2.1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -Wdate-time -D_FORTIFY_SOURCE=2 -c -o compact_hash.o compact_hash.cc g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/kraken2-2.1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -Wdate-time -D_FORTIFY_SOURCE=2 -c -o taxonomy.o taxonomy.cc g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/kraken2-2.1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -Wdate-time -D_FORTIFY_SOURCE=2 -c -o classify.o classify.cc g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/kraken2-2.1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -Wdate-time -D_FORTIFY_SOURCE=2 -c -o reports.o reports.cc g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/kraken2-2.1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -Wdate-time -D_FORTIFY_SOURCE=2 -c -o hyperloglogplus.o hyperloglogplus.cc g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/kraken2-2.1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -Wdate-time -D_FORTIFY_SOURCE=2 -c -o aa_translate.o aa_translate.cc g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/kraken2-2.1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -Wdate-time -D_FORTIFY_SOURCE=2 -c -o dump_table.o dump_table.cc g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/kraken2-2.1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -Wdate-time -D_FORTIFY_SOURCE=2 -c -o lookup_accession_numbers.o lookup_accession_numbers.cc g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/kraken2-2.1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -Wdate-time -D_FORTIFY_SOURCE=2 -c -o k2mask.o k2mask.cc g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/kraken2-2.1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -o estimate_capacity estimate_capacity.o seqreader.o mmscanner.o omp_hack.o utilities.o -Wl,-z,relro -Wl,-z,now g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/kraken2-2.1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -o lookup_accession_numbers lookup_accession_numbers.o mmap_file.o omp_hack.o utilities.o -Wl,-z,relro -Wl,-z,now g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/kraken2-2.1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -o dump_table dump_table.o mmap_file.o compact_hash.o omp_hack.o taxonomy.o reports.o hyperloglogplus.o -Wl,-z,relro -Wl,-z,now g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/kraken2-2.1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -o build_db build_db.o mmap_file.o compact_hash.o taxonomy.o seqreader.o mmscanner.o omp_hack.o utilities.o -Wl,-z,relro -Wl,-z,now g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/kraken2-2.1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -o classify classify.o reports.o hyperloglogplus.o mmap_file.o compact_hash.o taxonomy.o seqreader.o mmscanner.o omp_hack.o aa_translate.o utilities.o -Wl,-z,relro -Wl,-z,now g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/kraken2-2.1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -o k2mask k2mask.o seqreader.o -lz -pthread make[1]: Leaving directory '/build/reproducible-path/kraken2-2.1.3/src' dh_auto_test -O--sourcedirectory=src create-stamp debian/debhelper-build-stamp dh_testroot -O--sourcedirectory=src dh_prep -O--sourcedirectory=src dh_installdirs -O--sourcedirectory=src debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/kraken2-2.1.3' dh_auto_install -- KRAKEN2_DIR=/build/reproducible-path/kraken2-2.1.3/debian/kraken2/usr/lib/kraken2 cd src && make -j40 install DESTDIR=/build/reproducible-path/kraken2-2.1.3/debian/kraken2 AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" KRAKEN2_DIR=/build/reproducible-path/kraken2-2.1.3/debian/kraken2/usr/lib/kraken2 make[2]: Entering directory '/build/reproducible-path/kraken2-2.1.3/src' cp estimate_capacity build_db classify dump_table lookup_accession_numbers k2mask "/build/reproducible-path/kraken2-2.1.3/debian/kraken2/usr/lib/kraken2/" make[2]: Leaving directory '/build/reproducible-path/kraken2-2.1.3/src' ./install_kraken2.sh /build/reproducible-path/kraken2-2.1.3/debian/kraken2/usr/lib/kraken2 make[2]: Entering directory '/build/reproducible-path/kraken2-2.1.3/src' cp estimate_capacity build_db classify dump_table lookup_accession_numbers k2mask "/build/reproducible-path/kraken2-2.1.3/debian/kraken2/usr/lib/kraken2/" make[2]: Leaving directory '/build/reproducible-path/kraken2-2.1.3/src' Kraken 2 installation complete. To make things easier for you, you may want to copy/symlink the following files into a directory in your PATH: /build/reproducible-path/kraken2-2.1.3/debian/kraken2/usr/lib/kraken2/kraken2 /build/reproducible-path/kraken2-2.1.3/debian/kraken2/usr/lib/kraken2/kraken2-build /build/reproducible-path/kraken2-2.1.3/debian/kraken2/usr/lib/kraken2/kraken2-inspect make[1]: Leaving directory '/build/reproducible-path/kraken2-2.1.3' debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/kraken2-2.1.3' dh_install for pl in `grep -Rl '#![[:space:]]*/usr/bin/env[[:space:]]\+perl' debian/*/usr/*` ; do \ sed -i '1s?^#![[:space:]]*/usr/bin/env[[:space:]]\+perl?#!/usr/bin/perl?' ${pl} ; \ done make[1]: Leaving directory '/build/reproducible-path/kraken2-2.1.3' dh_installdocs -O--sourcedirectory=src dh_installchangelogs -O--sourcedirectory=src dh_installman -O--sourcedirectory=src dh_installsystemduser -O--sourcedirectory=src dh_perl -O--sourcedirectory=src debian/rules override_dh_link make[1]: Entering directory '/build/reproducible-path/kraken2-2.1.3' dh_link for file in /build/reproducible-path/kraken2-2.1.3/debian/kraken2/usr/lib/kraken2/kraken* ; do \ if ! echo ${file} | grep -q '\.pm$' ; then \ ln -s ../lib/kraken2/`basename ${file}` /build/reproducible-path/kraken2-2.1.3/debian/kraken2/usr/bin/`basename ${file}` ; \ fi \ done make[1]: Leaving directory '/build/reproducible-path/kraken2-2.1.3' dh_strip_nondeterminism -O--sourcedirectory=src dh_compress -O--sourcedirectory=src dh_fixperms -O--sourcedirectory=src dh_missing -O--sourcedirectory=src dh_dwz -a -O--sourcedirectory=src dh_strip -a -O--sourcedirectory=src dh_makeshlibs -a -O--sourcedirectory=src dh_shlibdeps -a -O--sourcedirectory=src dh_installdeb -O--sourcedirectory=src dh_gencontrol -O--sourcedirectory=src dpkg-gencontrol: warning: package kraken2: substitution variable ${perl:Depends} unused, but is defined dpkg-gencontrol: warning: package kraken2: substitution variable ${perl:Depends} unused, but is defined dh_md5sums -O--sourcedirectory=src dh_builddeb -O--sourcedirectory=src dpkg-deb: building package 'kraken2-dbgsym' in '../kraken2-dbgsym_2.1.3-1_amd64.deb'. dpkg-deb: building package 'kraken2' in '../kraken2_2.1.3-1_amd64.deb'. dpkg-genbuildinfo --build=binary -O../kraken2_2.1.3-1_amd64.buildinfo dpkg-genchanges --build=binary -O../kraken2_2.1.3-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/230066/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/230066/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/230066 and its subdirectories I: Current time: Fri Aug 1 04:28:46 +14 2025 I: pbuilder-time-stamp: 1753972126 + false + set +x Thu Jul 31 14:28:46 UTC 2025 I: Signing ./b2/kraken2_2.1.3-1_amd64.buildinfo as kraken2_2.1.3-1_amd64.buildinfo.asc Thu Jul 31 14:28:46 UTC 2025 I: Signed ./b2/kraken2_2.1.3-1_amd64.buildinfo as ./b2/kraken2_2.1.3-1_amd64.buildinfo.asc Thu Jul 31 14:28:46 UTC 2025 - build #2 for kraken2/unstable/amd64 on ionos11-amd64 done. Starting cleanup. All cleanup done. Thu Jul 31 14:28:46 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-d578IiDJ, removing. /srv/reproducible-results/rbuild-debian/r-b-build.krx5luch: total 44 drwxr-xr-x 2 jenkins jenkins 4096 Jul 31 14:27 b1 drwxr-xr-x 2 jenkins jenkins 4096 Jul 31 14:28 b2 -rw-r--r-- 1 jenkins jenkins 1973 Nov 28 2023 kraken2_2.1.3-1.dsc -rw------- 1 jenkins jenkins 31486 Jul 31 14:27 rbuildlog.3UDBSZg /srv/reproducible-results/rbuild-debian/r-b-build.krx5luch/b1: total 3928 -rw-r--r-- 1 jenkins jenkins 28126 Jul 31 14:27 build.log -rw-r--r-- 1 jenkins jenkins 2513384 Jul 31 14:27 kraken2-dbgsym_2.1.3-1_amd64.deb -rw-r--r-- 1 jenkins jenkins 339032 Jul 31 14:27 kraken2_2.1.3-1.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 1973 Jul 31 14:27 kraken2_2.1.3-1.dsc -rw-r--r-- 1 jenkins jenkins 4927 Jul 31 14:27 kraken2_2.1.3-1_amd64.buildinfo -rw-r--r-- 1 jenkins jenkins 5809 Jul 31 14:27 kraken2_2.1.3-1_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1419 Jul 31 14:27 kraken2_2.1.3-1_amd64.changes -rw-r--r-- 1 jenkins jenkins 870928 Jul 31 14:27 kraken2_2.1.3-1_amd64.deb -rw-r--r-- 1 jenkins jenkins 1528 Jul 31 14:27 kraken2_2.1.3-1_source.changes -rw-r--r-- 1 jenkins jenkins 218851 Jul 31 14:27 kraken2_2.1.3.orig.tar.gz /srv/reproducible-results/rbuild-debian/r-b-build.krx5luch/b2: total 3916 -rw-r--r-- 1 jenkins jenkins 30038 Jul 31 14:28 build.log -rw-r--r-- 1 jenkins jenkins 2513384 Jul 31 14:28 kraken2-dbgsym_2.1.3-1_amd64.deb -rw-r--r-- 1 jenkins jenkins 339032 Jul 31 14:28 kraken2_2.1.3-1.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 1973 Jul 31 14:28 kraken2_2.1.3-1.dsc -rw-r--r-- 1 jenkins jenkins 4914 Jul 31 14:28 kraken2_2.1.3-1_amd64.buildinfo -rw-r--r-- 1 jenkins jenkins 5796 Jul 31 14:28 kraken2_2.1.3-1_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1419 Jul 31 14:28 kraken2_2.1.3-1_amd64.changes -rw-r--r-- 1 jenkins jenkins 870928 Jul 31 14:28 kraken2_2.1.3-1_amd64.deb -rw-r--r-- 1 jenkins jenkins 1528 Jul 31 14:28 kraken2_2.1.3-1_source.changes -rw-r--r-- 1 jenkins jenkins 218851 Jul 31 14:28 kraken2_2.1.3.orig.tar.gz Thu Jul 31 14:28:46 UTC 2025 I: Deleting $TMPDIR on ionos11-amd64.debian.net. Thu Jul 31 14:28:47 UTC 2025 I: kraken2_2.1.3-1_amd64.changes: Format: 1.8 Date: Tue, 28 Nov 2023 20:23:52 +0100 Source: kraken2 Binary: kraken2 kraken2-dbgsym Architecture: amd64 Version: 2.1.3-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: kraken2 - taxonomic classification system using exact k-mer matches Changes: kraken2 (2.1.3-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.2 (routine-update) * Build-Depends: zlib1g-dev * Depends: python3 Checksums-Sha1: e0ee877eea8be467a237b26f29183cb80b267dee 2513384 kraken2-dbgsym_2.1.3-1_amd64.deb 924659698ce2d73aa3231777284c0614774b6573 4927 kraken2_2.1.3-1_amd64.buildinfo e61d9e7b9af52b43eb623c6b73ffad320cb1ae0f 870928 kraken2_2.1.3-1_amd64.deb Checksums-Sha256: 7e1d85823f30d9dff6296a6dc78ca1e523a4953ec89bd945c0878de153f5b980 2513384 kraken2-dbgsym_2.1.3-1_amd64.deb 9a689546e5185dbb679380eeab670839e168034fe2e2962af499385cb3a9931b 4927 kraken2_2.1.3-1_amd64.buildinfo c14034e804a9e7eaab5e56408e77d046eaa845eb8bbd4b30c8642bb25de63003 870928 kraken2_2.1.3-1_amd64.deb Files: c0fbcf85db35fc5103b5ccf6f77f9cc3 2513384 debug optional kraken2-dbgsym_2.1.3-1_amd64.deb ca21634885150cffc2cc54555d1dfb82 4927 science optional kraken2_2.1.3-1_amd64.buildinfo 88e705519bc8f487ac1018a68b2ec4d0 870928 science optional kraken2_2.1.3-1_amd64.deb removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/kraken2_2.1.3-1.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/kraken2_2.1.3-1.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/amd64/kraken2_2.1.3-1.build1.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/amd64/kraken2_2.1.3-1.build2.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/buildinfo/unstable/amd64/kraken2_2.1.3-1_amd64.buildinfo' removed '/var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/kraken2_2.1.3-1.diff.gz' Diff of the two buildlogs: -- --- b1/build.log 2025-07-31 14:27:44.605557648 +0000 +++ b2/build.log 2025-07-31 14:28:46.857635196 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Wed Sep 2 08:49:47 -12 2026 -I: pbuilder-time-stamp: 1788382187 +I: Current time: Fri Aug 1 04:27:46 +14 2025 +I: pbuilder-time-stamp: 1753972066 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -26,52 +26,84 @@ dpkg-source: info: applying fix_reading_fasta.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/268768/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/230066/tmp/hooks/D01_modify_environment starting +debug: Running on ionos11-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Jul 31 14:27 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/230066/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/230066/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='85e835789e7b4939bde3d27964b3f329' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='268768' - PS1='# ' - PS2='> ' + INVOCATION_ID=ff4fb0971db94e698c88acd864a45217 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=230066 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.krx5luch/pbuilderrc_YYeT --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.krx5luch/b1 --logfile b1/build.log kraken2_2.1.3-1.dsc' - SUDO_GID='110' - SUDO_UID='105' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://213.165.73.152:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.krx5luch/pbuilderrc_o4SE --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.krx5luch/b2 --logfile b2/build.log kraken2_2.1.3-1.dsc' + SUDO_GID=111 + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://46.16.76.132:3128 I: uname -a - Linux ionos5-amd64 6.12.33+deb12-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.33-1~bpo12+1 (2025-07-09) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-37-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.140-1 (2025-05-22) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 May 12 2025 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/268768/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 May 12 19:25 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/230066/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -139,7 +171,7 @@ Get: 28 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.24.2 [919 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] -Fetched 12.1 MB in 3s (3963 kB/s) +Fetched 12.1 MB in 3s (3611 kB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19850 files and directories currently installed.) @@ -274,7 +306,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/kraken2-2.1.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../kraken2_2.1.3-1_source.changes +I: user script /srv/workspace/pbuilder/230066/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/230066/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/kraken2-2.1.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../kraken2_2.1.3-1_source.changes dpkg-buildpackage: info: source package kraken2 dpkg-buildpackage: info: source version 2.1.3-1 dpkg-buildpackage: info: source distribution unstable @@ -284,7 +320,7 @@ debian/rules clean dh clean --sourcedirectory=src dh_auto_clean -O--sourcedirectory=src - cd src && make -j42 clean + cd src && make -j40 clean make[1]: Entering directory '/build/reproducible-path/kraken2-2.1.3/src' rm -f *.o estimate_capacity build_db classify dump_table lookup_accession_numbers k2mask make[1]: Leaving directory '/build/reproducible-path/kraken2-2.1.3/src' @@ -296,7 +332,7 @@ dh_autoreconf -O--sourcedirectory=src dh_auto_configure -O--sourcedirectory=src dh_auto_build -O--sourcedirectory=src - cd src && make -j42 "INSTALL=install --strip-program=true" + cd src && make -j40 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/kraken2-2.1.3/src' g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/kraken2-2.1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -Wdate-time -D_FORTIFY_SOURCE=2 -c -o estimate_capacity.o estimate_capacity.cc g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/kraken2-2.1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -Wdate-time -D_FORTIFY_SOURCE=2 -c -o seqreader.o seqreader.cc @@ -316,10 +352,10 @@ g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/kraken2-2.1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -Wdate-time -D_FORTIFY_SOURCE=2 -c -o k2mask.o k2mask.cc g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/kraken2-2.1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -o estimate_capacity estimate_capacity.o seqreader.o mmscanner.o omp_hack.o utilities.o -Wl,-z,relro -Wl,-z,now g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/kraken2-2.1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -o lookup_accession_numbers lookup_accession_numbers.o mmap_file.o omp_hack.o utilities.o -Wl,-z,relro -Wl,-z,now -g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/kraken2-2.1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -o build_db build_db.o mmap_file.o compact_hash.o taxonomy.o seqreader.o mmscanner.o omp_hack.o utilities.o -Wl,-z,relro -Wl,-z,now -g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/kraken2-2.1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -o k2mask k2mask.o seqreader.o -lz -pthread g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/kraken2-2.1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -o dump_table dump_table.o mmap_file.o compact_hash.o omp_hack.o taxonomy.o reports.o hyperloglogplus.o -Wl,-z,relro -Wl,-z,now +g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/kraken2-2.1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -o build_db build_db.o mmap_file.o compact_hash.o taxonomy.o seqreader.o mmscanner.o omp_hack.o utilities.o -Wl,-z,relro -Wl,-z,now g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/kraken2-2.1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -o classify classify.o reports.o hyperloglogplus.o mmap_file.o compact_hash.o taxonomy.o seqreader.o mmscanner.o omp_hack.o aa_translate.o utilities.o -Wl,-z,relro -Wl,-z,now +g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/kraken2-2.1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -o k2mask k2mask.o seqreader.o -lz -pthread make[1]: Leaving directory '/build/reproducible-path/kraken2-2.1.3/src' dh_auto_test -O--sourcedirectory=src create-stamp debian/debhelper-build-stamp @@ -329,7 +365,7 @@ debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/kraken2-2.1.3' dh_auto_install -- KRAKEN2_DIR=/build/reproducible-path/kraken2-2.1.3/debian/kraken2/usr/lib/kraken2 - cd src && make -j42 install DESTDIR=/build/reproducible-path/kraken2-2.1.3/debian/kraken2 AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" KRAKEN2_DIR=/build/reproducible-path/kraken2-2.1.3/debian/kraken2/usr/lib/kraken2 + cd src && make -j40 install DESTDIR=/build/reproducible-path/kraken2-2.1.3/debian/kraken2 AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" KRAKEN2_DIR=/build/reproducible-path/kraken2-2.1.3/debian/kraken2/usr/lib/kraken2 make[2]: Entering directory '/build/reproducible-path/kraken2-2.1.3/src' cp estimate_capacity build_db classify dump_table lookup_accession_numbers k2mask "/build/reproducible-path/kraken2-2.1.3/debian/kraken2/usr/lib/kraken2/" make[2]: Leaving directory '/build/reproducible-path/kraken2-2.1.3/src' @@ -381,8 +417,8 @@ dpkg-gencontrol: warning: package kraken2: substitution variable ${perl:Depends} unused, but is defined dh_md5sums -O--sourcedirectory=src dh_builddeb -O--sourcedirectory=src -dpkg-deb: building package 'kraken2' in '../kraken2_2.1.3-1_amd64.deb'. dpkg-deb: building package 'kraken2-dbgsym' in '../kraken2-dbgsym_2.1.3-1_amd64.deb'. +dpkg-deb: building package 'kraken2' in '../kraken2_2.1.3-1_amd64.deb'. dpkg-genbuildinfo --build=binary -O../kraken2_2.1.3-1_amd64.buildinfo dpkg-genchanges --build=binary -O../kraken2_2.1.3-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -390,12 +426,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/230066/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/230066/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/268768 and its subdirectories -I: Current time: Wed Sep 2 08:50:44 -12 2026 -I: pbuilder-time-stamp: 1788382244 +I: removing directory /srv/workspace/pbuilder/230066 and its subdirectories +I: Current time: Fri Aug 1 04:28:46 +14 2025 +I: pbuilder-time-stamp: 1753972126 Compressing the 2nd log... /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/kraken2_2.1.3-1.diff: 73.9% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/kraken2_2.1.3-1.diff.gz b2/build.log: 79.2% -- replaced with stdout Compressing the 1st log... b1/build.log: 80.1% -- replaced with stdout Thu Jul 31 14:28:48 UTC 2025 I: diffoscope 302 will be used to compare the two builds: ++ date -u +%s + DIFFOSCOPE_STAMP=/var/log/reproducible-builds/diffoscope_stamp_kraken2_unstable_amd64_1753972128 + touch /var/log/reproducible-builds/diffoscope_stamp_kraken2_unstable_amd64_1753972128 + RESULT=0 + systemd-run '--description=diffoscope on kraken2/2.1.3-1 in unstable/amd64' --slice=rb-build-diffoscope.slice -u rb-diffoscope-amd64_6-52205 '--property=SuccessExitStatus=1 124' --user --send-sighup --pipe --wait -E TMPDIR timeout 155m nice schroot --directory /srv/reproducible-results/rbuild-debian/r-b-build.krx5luch --run-session -c jenkins-reproducible-unstable-diffoscope-c66518c7-0bc3-4da5-9464-b1d9bed2f5ce -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian/r-b-build.krx5luch/dbd-tmp-oWnnVPG ; timeout 150m diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.krx5luch/kraken2_2.1.3-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.krx5luch/kraken2_2.1.3-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.krx5luch/kraken2_2.1.3-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.krx5luch/b1/kraken2_2.1.3-1_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.krx5luch/b2/kraken2_2.1.3-1_amd64.changes' + false + set +x Running as unit: rb-diffoscope-amd64_6-52205.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.krx5luch/kraken2_2.1.3-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.krx5luch/kraken2_2.1.3-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.krx5luch/kraken2_2.1.3-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.krx5luch/b1/kraken2_2.1.3-1_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.krx5luch/b2/kraken2_2.1.3-1_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 161ms CPU time consumed: 162ms _ _ ____ | | ___ __ __ _| | _____ _ __ |___ \ | |/ / '__/ _` | |/ / _ \ '_ \ __) | | <| | | (_| | < __/ | | |/ __/ |_|\_\_| \__,_|_|\_\___|_| |_|_____| Thu Jul 31 14:28:48 UTC 2025 I: diffoscope 302 found no differences in the changes files, and a .buildinfo file also exists. Thu Jul 31 14:28:48 UTC 2025 I: kraken2 from unstable built successfully and reproducibly on amd64. INSERT 0 1 INSERT 0 1 DELETE 1 [2025-07-31 14:28:48] INFO: Starting at 2025-07-31 14:28:48.849358 [2025-07-31 14:28:48] INFO: Generating the pages of 1 package(s) [2025-07-31 14:28:48] CRITICAL: https://tests.reproducible-builds.org/debian/unstable/amd64/kraken2 didn't produce a buildlog, even though it has been built. [2025-07-31 14:28:49] INFO: Finished at 2025-07-31 14:28:49.052615, took: 0:00:00.203260 Thu Jul 31 14:28:49 UTC 2025 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/unstable/amd64/kraken2.html Thu Jul 31 14:28:49 UTC 2025 I: Removing signed kraken2_2.1.3-1_amd64.buildinfo.asc files: removed './b1/kraken2_2.1.3-1_amd64.buildinfo.asc' removed './b2/kraken2_2.1.3-1_amd64.buildinfo.asc' 1753972129 amd64 unstable kraken2 Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/kraken2_2.1.3-1.rbuild.log: 76.0% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/kraken2_2.1.3-1.rbuild.log.gz [2025-07-31 14:28:49] INFO: Starting at 2025-07-31 14:28:49.306265 [2025-07-31 14:28:49] INFO: Generating the pages of 1 package(s) [2025-07-31 14:28:49] INFO: Finished at 2025-07-31 14:28:49.490227, took: 0:00:00.183965 All cleanup done. Thu Jul 31 14:28:49 UTC 2025 - total duration: 0h 2m 20s. Thu Jul 31 14:28:49 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-2BPKXWoD, removing. Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 2min 21.083s CPU time consumed: 4.360s