Running as unit: rb-build-amd64_7-40078.service ==================================================================================== Sun Nov 24 16:27:41 UTC 2024 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_amd64_7) on jenkins, called using "ionos11-amd64 ionos15-amd64" as arguments. Sun Nov 24 16:27:41 UTC 2024 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-MLxgUK4r" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Sun Nov 24 16:27:41 UTC 2024 - checking /var/lib/jenkins/offline_nodes if ionos11-amd64.debian.net is marked as down. Sun Nov 24 16:27:41 UTC 2024 - checking via ssh if ionos11-amd64.debian.net is up. removed '/tmp/read-only-fs-test-vOWhmi' Sun Nov 24 16:27:42 UTC 2024 - checking /var/lib/jenkins/offline_nodes if ionos15-amd64.debian.net is marked as down. Sun Nov 24 16:27:42 UTC 2024 - checking via ssh if ionos15-amd64.debian.net is up. removed '/tmp/read-only-fs-test-tJQkPO' ok, let's check if python-cgecore is building anywhere yet… ok, python-cgecore is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of python-cgecore in trixie on amd64 on jenkins now. 1st build will be done on ionos11-amd64.debian.net. 2nd build will be done on ionos15-amd64.debian.net. ============================================================================= Sun Nov 24 16:27:47 UTC 2024 I: starting to build python-cgecore/trixie/amd64 on jenkins on '2024-11-24 16:27' Sun Nov 24 16:27:47 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_7/40078/console.log 1732465667 amd64 trixie python-cgecore Sun Nov 24 16:27:47 UTC 2024 I: Downloading source for trixie/python-cgecore=1.5.6+ds-1 --2024-11-24 16:27:47-- http://deb.debian.org/debian/pool/main/p/python-cgecore/python-cgecore_1.5.6%2bds-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2142 (2.1K) [text/prs.lines.tag] Saving to: ‘python-cgecore_1.5.6+ds-1.dsc’ 0K .. 100% 290M=0s 2024-11-24 16:27:47 (290 MB/s) - ‘python-cgecore_1.5.6+ds-1.dsc’ saved [2142/2142] --2024-11-24 16:27:47-- http://deb.debian.org/debian/pool/main/p/python-cgecore/python-cgecore_1.5.6%2bds-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2142 (2.1K) [text/prs.lines.tag] Saving to: ‘python-cgecore_1.5.6+ds-1.dsc’ 0K .. 100% 290M=0s 2024-11-24 16:27:47 (290 MB/s) - ‘python-cgecore_1.5.6+ds-1.dsc’ saved [2142/2142] Sun Nov 24 16:27:48 UTC 2024 I: python-cgecore_1.5.6+ds-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: python-cgecore Binary: python3-cgecore Architecture: all Version: 1.5.6+ds-1 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://bitbucket.org/genomicepidemiology/cge_core_module/ Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/python-cgecore Vcs-Git: https://salsa.debian.org/med-team/python-cgecore.git Testsuite: autopkgtest-pkg-python Build-Depends: debhelper-compat (= 13), dh-python, python3, python3-setuptools, python3-biopython Package-List: python3-cgecore deb python optional arch=all Checksums-Sha1: 468c6d2be57dfd1935f28426b4b37d039f8e3fb1 26276 python-cgecore_1.5.6+ds.orig.tar.xz 6c086dc1ffafc4c36e63f77ab387d0b796156200 1844 python-cgecore_1.5.6+ds-1.debian.tar.xz Checksums-Sha256: c8314e290afb2dea6789fa3baea08d26166c967ec0f49c402eae9b1bf9e79ad2 26276 python-cgecore_1.5.6+ds.orig.tar.xz bed1ad6a213238506bca2ce08bc4c2781b5a63e7c1c1143656f9c9c45f47971f 1844 python-cgecore_1.5.6+ds-1.debian.tar.xz Files: baed19076f0ec4a42eb2d68800d4128f 26276 python-cgecore_1.5.6+ds.orig.tar.xz 6abe2f26115cfc3683aa3c4da7009060 1844 python-cgecore_1.5.6+ds-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJHBAEBCAAxFiEEhMGXeonn7+0+XKYuL9i+2sAg7tEFAl/BdCgTHG1vZWxsZXJA ZGViaWFuLm9yZwAKCRAv2L7awCDu0Zw6D/4sUzu1pGmuuOOl4UwR7cKYJzL/a4fe BgZOSFqT5xQUbusqzEVsKUsTDjMhK0k9xUQNl8eoahuYEa2ScfgKpUA6cV7i+SPk 3Pdk7UuCOCLhPuI+/E/Ecse8JYqKZnZf9BuUNAWvldlDetwL8SPnoYe8Aza9NNdk e7VQFDUKzhngvbqRow83IzHJb8eUGeZ6s/Kz205qtgewJT9cQv8amFZuYGS61wwJ oNcfudypJcSXW4+hqP9vXCr7shKhrhfRQJNjjnOASgpYYTo4JJUex53RHMyT3wgZ mFiHn0yqWRX5/6+FjlGpjlW4xMJTksd5qbQzWGNBS4DXSbJElu8/B8ICkfk7BeSM gAjwWK2AZBaytld6YHDuwNS8KKEkqDvwBlAd+p63N5P5nUfq82tIdjHHFs0BB6np NAXvQQS1Y92bfjG95MlbxlGZekLPHLIdnc3CwyTOP7bTfeBiUkdrNIfQN8YIwNWX mTej6OXVRfltgpTTbzl6+O6lj17GhLWOXhdE5/0HmSrwL01xuR0e4gCY77CfJbTr qV6YfyKHVJ7WoJTtiRw1MiHr4uMkiT65rAJoBsw7f+OObtPaZKFkrIHmLDWjbqTm 30ua2LdaV+n0S8SjRXP/4CUF7bSuzmjAydtYVdSaDJ9nb4H5PgYXlQVhLgXMRov8 nKmZEuatRFU+dg== =cXFt -----END PGP SIGNATURE----- Sun Nov 24 16:27:48 UTC 2024 I: Checking whether the package is not for us Sun Nov 24 16:27:48 UTC 2024 I: Starting 1st build on remote node ionos11-amd64.debian.net. Sun Nov 24 16:27:48 UTC 2024 I: Preparing to do remote build '1' on ionos11-amd64.debian.net. Sun Nov 24 16:27:48 UTC 2024 - checking /var/lib/jenkins/offline_nodes if ionos11-amd64.debian.net is marked as down. Sun Nov 24 16:27:48 UTC 2024 - checking via ssh if ionos11-amd64.debian.net is up. removed '/tmp/read-only-fs-test-j2bKar' ==================================================================================== Sun Nov 24 16:27:49 UTC 2024 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos11-amd64, called using "1 python-cgecore trixie /srv/reproducible-results/rbuild-debian/r-b-build.4OYPMk8L 1.5.6+ds-1" as arguments. Sun Nov 24 16:27:49 UTC 2024 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-a7q8aTqD" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Sun Nov 24 16:27:49 UTC 2024 I: Downloading source for trixie/python-cgecore=1.5.6+ds-1 Reading package lists... NOTICE: 'python-cgecore' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/python-cgecore.git Please use: git clone https://salsa.debian.org/med-team/python-cgecore.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 30.3 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main python-cgecore 1.5.6+ds-1 (dsc) [2142 B] Get:2 http://deb.debian.org/debian trixie/main python-cgecore 1.5.6+ds-1 (tar) [26.3 kB] Get:3 http://deb.debian.org/debian trixie/main python-cgecore 1.5.6+ds-1 (diff) [1844 B] Fetched 30.3 kB in 0s (757 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'python-cgecore' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/python-cgecore.git Please use: git clone https://salsa.debian.org/med-team/python-cgecore.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 30.3 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main python-cgecore 1.5.6+ds-1 (dsc) [2142 B] Get:2 http://deb.debian.org/debian trixie/main python-cgecore 1.5.6+ds-1 (tar) [26.3 kB] Get:3 http://deb.debian.org/debian trixie/main python-cgecore 1.5.6+ds-1 (diff) [1844 B] Fetched 30.3 kB in 0s (757 kB/s) Download complete and in download only mode ============================================================================= Building python-cgecore in trixie on amd64 on ionos11-amd64 now. Date: Sun Nov 24 16:27:49 UTC 2024 Date UTC: Sun Nov 24 16:27:49 UTC 2024 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Sun Nov 24 04:27:49 -12 2024 I: pbuilder-time-stamp: 1732465669 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [python-cgecore_1.5.6+ds-1.dsc] I: copying [./python-cgecore_1.5.6+ds.orig.tar.xz] I: copying [./python-cgecore_1.5.6+ds-1.debian.tar.xz] I: Extracting source gpgv: Signature made Fri Nov 27 21:48:24 2020 gpgv: using RSA key 84C1977A89E7EFED3E5CA62E2FD8BEDAC020EED1 gpgv: issuer "moeller@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./python-cgecore_1.5.6+ds-1.dsc: no acceptable signature found dpkg-source: info: extracting python-cgecore in python-cgecore-1.5.6+ds dpkg-source: info: unpacking python-cgecore_1.5.6+ds.orig.tar.xz dpkg-source: info: unpacking python-cgecore_1.5.6+ds-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3961677/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='a5b97edb980f4704957d9f66ee235709' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3961677' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.4OYPMk8L/pbuilderrc_kOA6 --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.4OYPMk8L/b1 --logfile b1/build.log python-cgecore_1.5.6+ds-1.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos11-amd64 6.1.0-27-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.115-1 (2024-11-01) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3961677/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, python3, python3-setuptools, python3-biopython dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19969 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3; however: Package python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-biopython; however: Package python3-biopython is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-urw-base35{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libcairo2{a} libcom-err2{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfontenc1{a} libfreetype6{a} libfribidi0{a} libgfortran5{a} libglib2.0-0t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libicu72{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} liblcms2-2{a} liblerc4{a} libmagic-mgc{a} libmagic1t64{a} libnsl2{a} libopenjp2-7{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libraqm0{a} libreadline8t64{a} libsharpyuv0{a} libtiff6{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxml2{a} libxrender1{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-autocommand{a} python3-biopython{a} python3-cairo{a} python3-chardet{a} python3-freetype{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-minimal{a} python3-more-itertools{a} python3-numpy{a} python3-pil{a} python3-pkg-resources{a} python3-reportlab{a} python3-rlpycairo{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.12{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} tzdata{a} w3c-sgml-lib{a} x11-common{a} xfonts-encodings{a} xfonts-utils{a} xml-core{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl fonts-dejavu-extra krb5-locales libarchive-cpio-perl libglib2.0-data libltdl-dev libmail-sendmail-perl lynx ncbi-blast+ python-biopython-doc python3-olefile shared-mime-info wget xdg-user-dirs 0 packages upgraded, 116 newly installed, 0 to remove and 0 not upgraded. Need to get 61.5 MB of archives. After unpacking 227 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 libpython3.12-minimal amd64 3.12.7-3 [815 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.6.4-1 [106 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 python3.12-minimal amd64 3.12.7-3 [2162 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 python3-minimal amd64 3.12.6-1 [26.7 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 tzdata all 2024b-3 [255 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 libkrb5support0 amd64 1.21.3-3 [32.5 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 libcom-err2 amd64 1.47.1-1+b1 [23.2 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 libk5crypto3 amd64 1.21.3-3 [79.9 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get: 12 http://deb.debian.org/debian trixie/main amd64 libkrb5-3 amd64 1.21.3-3 [324 kB] Get: 13 http://deb.debian.org/debian trixie/main amd64 libgssapi-krb5-2 amd64 1.21.3-3 [136 kB] Get: 14 http://deb.debian.org/debian trixie/main amd64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 15 http://deb.debian.org/debian trixie/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.3+b1 [83.1 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 libnsl2 amd64 1.3.0-3+b3 [40.6 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 readline-common all 8.2-5 [69.3 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 libreadline8t64 amd64 8.2-5 [169 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 libpython3.12-stdlib amd64 3.12.7-3 [1966 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 python3.12 amd64 3.12.7-3 [671 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 libpython3-stdlib amd64 3.12.6-1 [9692 B] Get: 22 http://deb.debian.org/debian trixie/main amd64 python3 amd64 3.12.6-1 [27.8 kB] Get: 23 http://deb.debian.org/debian trixie/main amd64 sgml-base all 1.31 [15.4 kB] Get: 24 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get: 26 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get: 27 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get: 28 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.22.5-2 [200 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 30 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-5 [1181 kB] Get: 31 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.40.2-11 [91.5 kB] Get: 32 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 33 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 34 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 35 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.72-3 [493 kB] Get: 36 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 37 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 38 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.22.5-2 [723 kB] Get: 39 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.20 [89.7 kB] Get: 40 http://deb.debian.org/debian trixie/main amd64 libtool all 2.4.7-8 [517 kB] Get: 41 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 42 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 43 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 44 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 45 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 46 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 47 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-5+b1 [9423 kB] Get: 48 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB] Get: 49 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.22.5-2 [1601 kB] Get: 50 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 51 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 52 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.20 [915 kB] Get: 53 http://deb.debian.org/debian trixie/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 54 http://deb.debian.org/debian trixie/main amd64 python3-more-itertools all 10.5.0-1 [63.8 kB] Get: 55 http://deb.debian.org/debian trixie/main amd64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 56 http://deb.debian.org/debian trixie/main amd64 python3-typeguard all 4.4.1-1 [37.0 kB] Get: 57 http://deb.debian.org/debian trixie/main amd64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 58 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 59 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 60 http://deb.debian.org/debian trixie/main amd64 python3-pkg-resources all 74.1.2-2 [213 kB] Get: 61 http://deb.debian.org/debian trixie/main amd64 python3-zipp all 3.21.0-1 [10.6 kB] Get: 62 http://deb.debian.org/debian trixie/main amd64 python3-setuptools all 74.1.2-2 [736 kB] Get: 63 http://deb.debian.org/debian trixie/main amd64 dh-python all 6.20241024 [109 kB] Get: 64 http://deb.debian.org/debian trixie/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 65 http://deb.debian.org/debian trixie/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 66 http://deb.debian.org/debian trixie/main amd64 libfontenc1 amd64 1:1.1.8-1+b1 [23.3 kB] Get: 67 http://deb.debian.org/debian trixie/main amd64 libbrotli1 amd64 1.1.0-2+b6 [302 kB] Get: 68 http://deb.debian.org/debian trixie/main amd64 libpng16-16t64 amd64 1.6.44-2 [280 kB] Get: 69 http://deb.debian.org/debian trixie/main amd64 libfreetype6 amd64 2.13.3+dfsg-1 [452 kB] Get: 70 http://deb.debian.org/debian trixie/main amd64 x11-common all 1:7.7+23.1 [216 kB] Get: 71 http://deb.debian.org/debian trixie/main amd64 xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get: 72 http://deb.debian.org/debian trixie/main amd64 xfonts-utils amd64 1:7.7+7 [93.3 kB] Get: 73 http://deb.debian.org/debian trixie/main amd64 fonts-urw-base35 all 20200910-8 [10.8 MB] Get: 74 http://deb.debian.org/debian trixie/main amd64 fontconfig-config amd64 2.15.0-1.1+b1 [318 kB] Get: 75 http://deb.debian.org/debian trixie/main amd64 libblas3 amd64 3.12.0-3+b1 [152 kB] Get: 76 http://deb.debian.org/debian trixie/main amd64 libfontconfig1 amd64 2.15.0-1.1+b1 [391 kB] Get: 77 http://deb.debian.org/debian trixie/main amd64 libpixman-1-0 amd64 0.44.0-3 [248 kB] Get: 78 http://deb.debian.org/debian trixie/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB] Get: 79 http://deb.debian.org/debian trixie/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB] Get: 80 http://deb.debian.org/debian trixie/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB] Get: 81 http://deb.debian.org/debian trixie/main amd64 libx11-data all 2:1.8.10-2 [337 kB] Get: 82 http://deb.debian.org/debian trixie/main amd64 libx11-6 amd64 2:1.8.10-2 [813 kB] Get: 83 http://deb.debian.org/debian trixie/main amd64 libxcb-render0 amd64 1.17.0-2+b1 [115 kB] Get: 84 http://deb.debian.org/debian trixie/main amd64 libxcb-shm0 amd64 1.17.0-2+b1 [105 kB] Get: 85 http://deb.debian.org/debian trixie/main amd64 libxext6 amd64 2:1.3.4-1+b2 [50.5 kB] Get: 86 http://deb.debian.org/debian trixie/main amd64 libxrender1 amd64 1:0.9.10-1.1+b2 [27.8 kB] Get: 87 http://deb.debian.org/debian trixie/main amd64 libcairo2 amd64 1.18.2-2 [535 kB] Get: 88 http://deb.debian.org/debian trixie/main amd64 libdeflate0 amd64 1.22-1 [47.3 kB] Get: 89 http://deb.debian.org/debian trixie/main amd64 libfribidi0 amd64 1.0.15-1 [71.8 kB] Get: 90 http://deb.debian.org/debian trixie/main amd64 libgfortran5 amd64 14.2.0-8 [836 kB] Get: 91 http://deb.debian.org/debian trixie/main amd64 libglib2.0-0t64 amd64 2.82.2-2 [1501 kB] Get: 92 http://deb.debian.org/debian trixie/main amd64 libgraphite2-3 amd64 1.3.14-2+b1 [75.4 kB] Get: 93 http://deb.debian.org/debian trixie/main amd64 libharfbuzz0b amd64 10.0.1-1 [477 kB] Get: 94 http://deb.debian.org/debian trixie/main amd64 libimagequant0 amd64 2.18.0-1+b2 [35.2 kB] Get: 95 http://deb.debian.org/debian trixie/main amd64 libjbig0 amd64 2.1-6.1+b2 [32.1 kB] Get: 96 http://deb.debian.org/debian trixie/main amd64 libjpeg62-turbo amd64 1:2.1.5-3+b1 [168 kB] Get: 97 http://deb.debian.org/debian trixie/main amd64 liblapack3 amd64 3.12.0-3+b1 [2450 kB] Get: 98 http://deb.debian.org/debian trixie/main amd64 liblcms2-2 amd64 2.16-2 [160 kB] Get: 99 http://deb.debian.org/debian trixie/main amd64 liblerc4 amd64 4.0.0+ds-5 [183 kB] Get: 100 http://deb.debian.org/debian trixie/main amd64 libopenjp2-7 amd64 2.5.0-2+b4 [199 kB] Get: 101 http://deb.debian.org/debian trixie/main amd64 libraqm0 amd64 0.10.1-1+b2 [14.1 kB] Get: 102 http://deb.debian.org/debian trixie/main amd64 libsharpyuv0 amd64 1.4.0-0.1+b1 [113 kB] Get: 103 http://deb.debian.org/debian trixie/main amd64 libwebp7 amd64 1.4.0-0.1+b1 [313 kB] Get: 104 http://deb.debian.org/debian trixie/main amd64 libtiff6 amd64 4.5.1+git230720-5 [324 kB] Get: 105 http://deb.debian.org/debian trixie/main amd64 libwebpdemux2 amd64 1.4.0-0.1+b1 [111 kB] Get: 106 http://deb.debian.org/debian trixie/main amd64 libwebpmux3 amd64 1.4.0-0.1+b1 [123 kB] Get: 107 http://deb.debian.org/debian trixie/main amd64 python3-numpy amd64 1:1.26.4+ds-12 [4738 kB] Get: 108 http://deb.debian.org/debian trixie/main amd64 python3-chardet all 5.2.0+dfsg-1 [107 kB] Get: 109 http://deb.debian.org/debian trixie/main amd64 python3-pil amd64 10.4.0-1+b1 [522 kB] Get: 110 http://deb.debian.org/debian trixie/main amd64 python3-cairo amd64 1.26.1-2+b1 [130 kB] Get: 111 http://deb.debian.org/debian trixie/main amd64 python3-freetype all 2.5.1-1 [89.3 kB] Get: 112 http://deb.debian.org/debian trixie/main amd64 python3-rlpycairo all 0.3.0-3 [9904 B] Get: 113 http://deb.debian.org/debian trixie/main amd64 python3-reportlab all 4.2.5-1 [1117 kB] Get: 114 http://deb.debian.org/debian trixie/main amd64 xml-core all 0.19 [20.1 kB] Get: 115 http://deb.debian.org/debian trixie/main amd64 w3c-sgml-lib all 1.3-3 [273 kB] Get: 116 http://deb.debian.org/debian trixie/main amd64 python3-biopython amd64 1.84+dfsg-4+b1 [1651 kB] Fetched 61.5 MB in 1s (72.4 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.12-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19969 files and directories currently installed.) Preparing to unpack .../libpython3.12-minimal_3.12.7-3_amd64.deb ... Unpacking libpython3.12-minimal:amd64 (3.12.7-3) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.6.4-1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.4-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../python3.12-minimal_3.12.7-3_amd64.deb ... Unpacking python3.12-minimal (3.12.7-3) ... Setting up libpython3.12-minimal:amd64 (3.12.7-3) ... Setting up libexpat1:amd64 (2.6.4-1) ... Setting up python3.12-minimal (3.12.7-3) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20289 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.12.6-1_amd64.deb ... Unpacking python3-minimal (3.12.6-1) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../03-tzdata_2024b-3_all.deb ... Unpacking tzdata (2024b-3) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../04-libkrb5support0_1.21.3-3_amd64.deb ... Unpacking libkrb5support0:amd64 (1.21.3-3) ... Selecting previously unselected package libcom-err2:amd64. Preparing to unpack .../05-libcom-err2_1.47.1-1+b1_amd64.deb ... Unpacking libcom-err2:amd64 (1.47.1-1+b1) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../06-libk5crypto3_1.21.3-3_amd64.deb ... Unpacking libk5crypto3:amd64 (1.21.3-3) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../07-libkeyutils1_1.6.3-4_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.3-4) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../08-libkrb5-3_1.21.3-3_amd64.deb ... Unpacking libkrb5-3:amd64 (1.21.3-3) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../09-libgssapi-krb5-2_1.21.3-3_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.21.3-3) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../10-libtirpc-common_1.3.4+ds-1.3_all.deb ... Unpacking libtirpc-common (1.3.4+ds-1.3) ... Selecting previously unselected package libtirpc3t64:amd64. Preparing to unpack .../11-libtirpc3t64_1.3.4+ds-1.3+b1_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ... Selecting previously unselected package libnsl2:amd64. Preparing to unpack .../12-libnsl2_1.3.0-3+b3_amd64.deb ... Unpacking libnsl2:amd64 (1.3.0-3+b3) ... Selecting previously unselected package readline-common. Preparing to unpack .../13-readline-common_8.2-5_all.deb ... Unpacking readline-common (8.2-5) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../14-libreadline8t64_8.2-5_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-5) ... Selecting previously unselected package libpython3.12-stdlib:amd64. Preparing to unpack .../15-libpython3.12-stdlib_3.12.7-3_amd64.deb ... Unpacking libpython3.12-stdlib:amd64 (3.12.7-3) ... Selecting previously unselected package python3.12. Preparing to unpack .../16-python3.12_3.12.7-3_amd64.deb ... Unpacking python3.12 (3.12.7-3) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../17-libpython3-stdlib_3.12.6-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.12.6-1) ... Setting up python3-minimal (3.12.6-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21351 files and directories currently installed.) Preparing to unpack .../00-python3_3.12.6-1_amd64.deb ... Unpacking python3 (3.12.6-1) ... Selecting previously unselected package sgml-base. Preparing to unpack .../01-sgml-base_1.31_all.deb ... Unpacking sgml-base (1.31) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../02-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../03-libmagic-mgc_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../04-libmagic1t64_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../05-file_1%3a5.45-3+b1_amd64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../06-gettext-base_0.22.5-2_amd64.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../07-libuchardet0_0.0.8-1+b2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../08-groff-base_1.23.0-5_amd64.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../09-bsdextrautils_2.40.2-11_amd64.deb ... Unpacking bsdextrautils (2.40.2-11) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../10-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../11-man-db_2.13.0-1_amd64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../12-m4_1.4.19-4_amd64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../13-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../14-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../15-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../16-autopoint_0.22.5-2_all.deb ... Unpacking autopoint (0.22.5-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../17-libdebhelper-perl_13.20_all.deb ... Unpacking libdebhelper-perl (13.20) ... Selecting previously unselected package libtool. Preparing to unpack .../18-libtool_2.4.7-8_all.deb ... Unpacking libtool (2.4.7-8) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../19-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../20-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../21-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../22-dh-strip-nondeterminism_1.14.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.0-1) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../23-libelf1t64_0.192-4_amd64.deb ... Unpacking libelf1t64:amd64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../24-dwz_0.15-1+b1_amd64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../25-libicu72_72.1-5+b1_amd64.deb ... Unpacking libicu72:amd64 (72.1-5+b1) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../26-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_amd64.deb ... Unpacking libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../27-gettext_0.22.5-2_amd64.deb ... Unpacking gettext (0.22.5-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../28-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../29-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../30-debhelper_13.20_all.deb ... Unpacking debhelper (13.20) ... Selecting previously unselected package python3-autocommand. Preparing to unpack .../31-python3-autocommand_2.2.2-3_all.deb ... Unpacking python3-autocommand (2.2.2-3) ... Selecting previously unselected package python3-more-itertools. 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Setting up python3-typing-extensions (4.12.2-2) ... Setting up python3-more-itertools (10.5.0-1) ... Setting up python3-cairo (1.26.1-2+b1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up python3-typeguard (4.4.1-1) ... Setting up python3-inflect (7.3.1-2) ... Setting up python3-rlpycairo (0.3.0-3) ... Setting up python3-pkg-resources (74.1.2-2) ... Setting up python3-setuptools (74.1.2-2) ... Setting up python3-chardet (5.2.0+dfsg-1) ... Setting up python3-numpy (1:1.26.4+ds-12) ... Setting up python3-reportlab (4.2.5-1) ... Setting up dh-python (6.20241024) ... Processing triggers for libc-bin (2.40-3) ... Processing triggers for sgml-base (1.31) ... Setting up w3c-sgml-lib (1.3-3) ... Setting up python3-biopython (1.84+dfsg-4+b1) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/python-cgecore-1.5.6+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-cgecore_1.5.6+ds-1_source.changes dpkg-buildpackage: info: source package python-cgecore dpkg-buildpackage: info: source version 1.5.6+ds-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Steffen Moeller dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --with python3 --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/python-cgecore-1.5.6+ds' dh_auto_clean I: pybuild base:311: python3.12 setup.py clean running clean removing '/build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.12' does not exist -- can't clean it rm -rf cgecore.egg-info make[1]: Leaving directory '/build/reproducible-path/python-cgecore-1.5.6+ds' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.12 setup.py config running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py build running build running build_py creating /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore copying cgecore/argumentparsing.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore copying cgecore/__init__.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore copying cgecore/utility.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore copying cgecore/cmdline.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore copying cgecore/alignment.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore copying cgecore/cgefinder.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore creating /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/blaster copying cgecore/blaster/__init__.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/blaster copying cgecore/blaster/blaster.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/blaster copying cgecore/blaster/run_blaster.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/blaster creating /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/organisminfo copying cgecore/organisminfo/__init__.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/organisminfo copying cgecore/organisminfo/gramstain.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/organisminfo copying cgecore/organisminfo/species.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/organisminfo copying cgecore/organisminfo/gram_neg.txt -> /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/organisminfo copying cgecore/organisminfo/gram_pos.txt -> /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/organisminfo dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: cd /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build; python3.12 -m unittest discover -v /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/utility.py:137: SyntaxWarning: invalid escape sequence '\{' """ /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/utility.py:491: SyntaxWarning: invalid escape sequence '\w' src = re.sub('[^\w/\-\.\*]', '', src) /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/utility.py:492: SyntaxWarning: invalid escape sequence '\w' dst = re.sub('[^\w/\-\.\*]', '', dst) /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/utility.py:493: SyntaxWarning: invalid escape sequence '\W' if len(re.sub('[\W]', '', src)) < 5 or len(re.sub('[\W]', '', dst)) < 5: /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/utility.py:493: SyntaxWarning: invalid escape sequence '\W' if len(re.sub('[\W]', '', src)) < 5 or len(re.sub('[\W]', '', dst)) < 5: /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/utility.py:520: SyntaxWarning: invalid escape sequence '\w' invalid_chars = re.findall('[^\w/\-\.\*]', os.path.basename(file_)) /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/utility.py:539: SyntaxWarning: invalid escape sequence '\w' src = re.sub('[^\w/\-\.\*]', '', src) /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/utility.py:540: SyntaxWarning: invalid escape sequence '\w' dst = re.sub('[^\w/\-\.\*]', '', dst) /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/utility.py:541: SyntaxWarning: invalid escape sequence '\W' if len(re.sub('[\W]', '', src)) < 5 or len(re.sub('[\W]', '', dst)) < 5: /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/utility.py:541: SyntaxWarning: invalid escape sequence '\W' if len(re.sub('[\W]', '', src)) < 5 or len(re.sub('[\W]', '', dst)) < 5: ---------------------------------------------------------------------- Ran 0 tests in 0.000s NO TESTS RAN create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/python3-cgecore/ -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running install_lib creating /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr creating /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib creating /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12 creating /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages creating /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/argumentparsing.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/__init__.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/utility.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore creating /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/__pycache__ copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/__pycache__/cmdline.cpython-312.pyc -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/__pycache__ copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/__pycache__/utility.cpython-312.pyc -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/__pycache__ copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/__pycache__ copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/__pycache__/argumentparsing.cpython-312.pyc -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/__pycache__ creating /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/blaster copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/blaster/__init__.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/blaster copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/blaster/blaster.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/blaster creating /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/blaster/__pycache__ copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/blaster/__pycache__/blaster.cpython-312.pyc -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/blaster/__pycache__ copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/blaster/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/blaster/__pycache__ copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/blaster/run_blaster.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/blaster copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/cmdline.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/alignment.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore creating /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/organisminfo copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/organisminfo/__init__.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/organisminfo copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/organisminfo/gramstain.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/organisminfo copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/organisminfo/gram_neg.txt -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/organisminfo creating /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/organisminfo/__pycache__ copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/organisminfo/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/organisminfo/__pycache__ copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/organisminfo/species.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/organisminfo copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/organisminfo/gram_pos.txt -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/organisminfo copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/cgefinder.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore byte-compiling /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/argumentparsing.py to argumentparsing.cpython-312.pyc byte-compiling /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/utility.py to utility.cpython-312.pyc /usr/lib/python3.12/dist-packages/cgecore/utility.py:137: SyntaxWarning: invalid escape sequence '\{' /usr/lib/python3.12/dist-packages/cgecore/utility.py:491: SyntaxWarning: invalid escape sequence '\w' /usr/lib/python3.12/dist-packages/cgecore/utility.py:492: SyntaxWarning: invalid escape sequence '\w' /usr/lib/python3.12/dist-packages/cgecore/utility.py:493: SyntaxWarning: invalid escape sequence '\W' /usr/lib/python3.12/dist-packages/cgecore/utility.py:493: SyntaxWarning: invalid escape sequence '\W' /usr/lib/python3.12/dist-packages/cgecore/utility.py:520: SyntaxWarning: invalid escape sequence '\w' /usr/lib/python3.12/dist-packages/cgecore/utility.py:539: SyntaxWarning: invalid escape sequence '\w' /usr/lib/python3.12/dist-packages/cgecore/utility.py:540: SyntaxWarning: invalid escape sequence '\w' /usr/lib/python3.12/dist-packages/cgecore/utility.py:541: SyntaxWarning: invalid escape sequence '\W' /usr/lib/python3.12/dist-packages/cgecore/utility.py:541: SyntaxWarning: invalid escape sequence '\W' byte-compiling /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/blaster/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/blaster/blaster.py to blaster.cpython-312.pyc byte-compiling /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/blaster/run_blaster.py to run_blaster.cpython-312.pyc byte-compiling /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/cmdline.py to cmdline.cpython-312.pyc byte-compiling /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/alignment.py to alignment.cpython-312.pyc byte-compiling /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/organisminfo/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/organisminfo/gramstain.py to gramstain.cpython-312.pyc byte-compiling /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/organisminfo/species.py to species.cpython-312.pyc byte-compiling /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/cgefinder.py to cgefinder.cpython-312.pyc /usr/lib/python3.12/dist-packages/cgecore/cgefinder.py:242: SyntaxWarning: invalid escape sequence '\w' /usr/lib/python3.12/dist-packages/cgecore/cgefinder.py:243: SyntaxWarning: invalid escape sequence '\w' running install_egg_info running egg_info creating cgecore.egg-info writing cgecore.egg-info/PKG-INFO writing dependency_links to cgecore.egg-info/dependency_links.txt writing top-level names to cgecore.egg-info/top_level.txt writing manifest file 'cgecore.egg-info/SOURCES.txt' reading manifest file 'cgecore.egg-info/SOURCES.txt' writing manifest file 'cgecore.egg-info/SOURCES.txt' Copying cgecore.egg-info to /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore-1.5.6.egg-info Skipping SOURCES.txt running install_scripts dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-cgecore' in '../python3-cgecore_1.5.6+ds-1_all.deb'. dpkg-genbuildinfo --build=binary -O../python-cgecore_1.5.6+ds-1_amd64.buildinfo dpkg-genchanges --build=binary -O../python-cgecore_1.5.6+ds-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3961677 and its subdirectories I: Current time: Sun Nov 24 04:30:00 -12 2024 I: pbuilder-time-stamp: 1732465800 Sun Nov 24 16:30:01 UTC 2024 I: Signing ./b1/python-cgecore_1.5.6+ds-1_amd64.buildinfo as python-cgecore_1.5.6+ds-1_amd64.buildinfo.asc Sun Nov 24 16:30:01 UTC 2024 I: Signed ./b1/python-cgecore_1.5.6+ds-1_amd64.buildinfo as ./b1/python-cgecore_1.5.6+ds-1_amd64.buildinfo.asc Sun Nov 24 16:30:01 UTC 2024 - build #1 for python-cgecore/trixie/amd64 on ionos11-amd64 done. Starting cleanup. All cleanup done. Sun Nov 24 16:30:01 UTC 2024 - reproducible_build.sh stopped running as /tmp/jenkins-script-a7q8aTqD, removing. /srv/reproducible-results/rbuild-debian/r-b-build.4OYPMk8L: total 16 drwxr-xr-x 2 jenkins jenkins 4096 Nov 24 16:30 b1 drwxr-xr-x 2 jenkins jenkins 4096 Nov 24 16:27 b2 -rw-r--r-- 1 jenkins jenkins 2142 Nov 27 2020 python-cgecore_1.5.6+ds-1.dsc -rw------- 1 jenkins jenkins 3305 Nov 24 16:27 rbuildlog.5OLC5wB /srv/reproducible-results/rbuild-debian/r-b-build.4OYPMk8L/b1: total 160 -rw-r--r-- 1 jenkins jenkins 66248 Nov 24 16:30 build.log -rw-r--r-- 1 jenkins jenkins 1844 Nov 24 16:30 python-cgecore_1.5.6+ds-1.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2142 Nov 24 16:30 python-cgecore_1.5.6+ds-1.dsc -rw-r--r-- 1 jenkins jenkins 7416 Nov 24 16:30 python-cgecore_1.5.6+ds-1_amd64.buildinfo -rw-r--r-- 1 jenkins jenkins 8298 Nov 24 16:30 python-cgecore_1.5.6+ds-1_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1173 Nov 24 16:30 python-cgecore_1.5.6+ds-1_amd64.changes -rw-r--r-- 1 jenkins jenkins 1624 Nov 24 16:30 python-cgecore_1.5.6+ds-1_source.changes -rw-r--r-- 1 jenkins jenkins 26276 Nov 24 16:30 python-cgecore_1.5.6+ds.orig.tar.xz -rw-r--r-- 1 jenkins jenkins 28628 Nov 24 16:30 python3-cgecore_1.5.6+ds-1_all.deb /srv/reproducible-results/rbuild-debian/r-b-build.4OYPMk8L/b2: total 0 Sun Nov 24 16:30:01 UTC 2024 I: Deleting $TMPDIR on ionos11-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sun Nov 24 04:27:49 -12 2024 I: pbuilder-time-stamp: 1732465669 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [python-cgecore_1.5.6+ds-1.dsc] I: copying [./python-cgecore_1.5.6+ds.orig.tar.xz] I: copying [./python-cgecore_1.5.6+ds-1.debian.tar.xz] I: Extracting source gpgv: Signature made Fri Nov 27 21:48:24 2020 gpgv: using RSA key 84C1977A89E7EFED3E5CA62E2FD8BEDAC020EED1 gpgv: issuer "moeller@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./python-cgecore_1.5.6+ds-1.dsc: no acceptable signature found dpkg-source: info: extracting python-cgecore in python-cgecore-1.5.6+ds dpkg-source: info: unpacking python-cgecore_1.5.6+ds.orig.tar.xz dpkg-source: info: unpacking python-cgecore_1.5.6+ds-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3961677/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='a5b97edb980f4704957d9f66ee235709' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3961677' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.4OYPMk8L/pbuilderrc_kOA6 --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.4OYPMk8L/b1 --logfile b1/build.log python-cgecore_1.5.6+ds-1.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos11-amd64 6.1.0-27-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.115-1 (2024-11-01) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3961677/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, python3, python3-setuptools, python3-biopython dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19969 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3; however: Package python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-biopython; however: Package python3-biopython is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-urw-base35{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libcairo2{a} libcom-err2{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfontenc1{a} libfreetype6{a} libfribidi0{a} libgfortran5{a} libglib2.0-0t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libicu72{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} liblcms2-2{a} liblerc4{a} libmagic-mgc{a} libmagic1t64{a} libnsl2{a} libopenjp2-7{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libraqm0{a} libreadline8t64{a} libsharpyuv0{a} libtiff6{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxml2{a} libxrender1{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-autocommand{a} python3-biopython{a} python3-cairo{a} python3-chardet{a} python3-freetype{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-minimal{a} python3-more-itertools{a} python3-numpy{a} python3-pil{a} python3-pkg-resources{a} python3-reportlab{a} python3-rlpycairo{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.12{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} tzdata{a} w3c-sgml-lib{a} x11-common{a} xfonts-encodings{a} xfonts-utils{a} xml-core{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl fonts-dejavu-extra krb5-locales libarchive-cpio-perl libglib2.0-data libltdl-dev libmail-sendmail-perl lynx ncbi-blast+ python-biopython-doc python3-olefile shared-mime-info wget xdg-user-dirs 0 packages upgraded, 116 newly installed, 0 to remove and 0 not upgraded. Need to get 61.5 MB of archives. After unpacking 227 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 libpython3.12-minimal amd64 3.12.7-3 [815 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.6.4-1 [106 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 python3.12-minimal amd64 3.12.7-3 [2162 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 python3-minimal amd64 3.12.6-1 [26.7 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 tzdata all 2024b-3 [255 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 libkrb5support0 amd64 1.21.3-3 [32.5 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 libcom-err2 amd64 1.47.1-1+b1 [23.2 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 libk5crypto3 amd64 1.21.3-3 [79.9 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get: 12 http://deb.debian.org/debian trixie/main amd64 libkrb5-3 amd64 1.21.3-3 [324 kB] Get: 13 http://deb.debian.org/debian trixie/main amd64 libgssapi-krb5-2 amd64 1.21.3-3 [136 kB] Get: 14 http://deb.debian.org/debian trixie/main amd64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 15 http://deb.debian.org/debian trixie/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.3+b1 [83.1 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 libnsl2 amd64 1.3.0-3+b3 [40.6 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 readline-common all 8.2-5 [69.3 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 libreadline8t64 amd64 8.2-5 [169 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 libpython3.12-stdlib amd64 3.12.7-3 [1966 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 python3.12 amd64 3.12.7-3 [671 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 libpython3-stdlib amd64 3.12.6-1 [9692 B] Get: 22 http://deb.debian.org/debian trixie/main amd64 python3 amd64 3.12.6-1 [27.8 kB] Get: 23 http://deb.debian.org/debian trixie/main amd64 sgml-base all 1.31 [15.4 kB] Get: 24 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get: 26 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get: 27 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get: 28 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.22.5-2 [200 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 30 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-5 [1181 kB] Get: 31 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.40.2-11 [91.5 kB] Get: 32 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 33 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 34 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 35 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.72-3 [493 kB] Get: 36 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 37 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 38 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.22.5-2 [723 kB] Get: 39 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.20 [89.7 kB] Get: 40 http://deb.debian.org/debian trixie/main amd64 libtool all 2.4.7-8 [517 kB] Get: 41 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 42 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 43 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 44 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 45 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 46 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 47 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-5+b1 [9423 kB] Get: 48 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB] Get: 49 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.22.5-2 [1601 kB] Get: 50 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 51 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 52 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.20 [915 kB] Get: 53 http://deb.debian.org/debian trixie/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 54 http://deb.debian.org/debian trixie/main amd64 python3-more-itertools all 10.5.0-1 [63.8 kB] Get: 55 http://deb.debian.org/debian trixie/main amd64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 56 http://deb.debian.org/debian trixie/main amd64 python3-typeguard all 4.4.1-1 [37.0 kB] Get: 57 http://deb.debian.org/debian trixie/main amd64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 58 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 59 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 60 http://deb.debian.org/debian trixie/main amd64 python3-pkg-resources all 74.1.2-2 [213 kB] Get: 61 http://deb.debian.org/debian trixie/main amd64 python3-zipp all 3.21.0-1 [10.6 kB] Get: 62 http://deb.debian.org/debian trixie/main amd64 python3-setuptools all 74.1.2-2 [736 kB] Get: 63 http://deb.debian.org/debian trixie/main amd64 dh-python all 6.20241024 [109 kB] Get: 64 http://deb.debian.org/debian trixie/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 65 http://deb.debian.org/debian trixie/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 66 http://deb.debian.org/debian trixie/main amd64 libfontenc1 amd64 1:1.1.8-1+b1 [23.3 kB] Get: 67 http://deb.debian.org/debian trixie/main amd64 libbrotli1 amd64 1.1.0-2+b6 [302 kB] Get: 68 http://deb.debian.org/debian trixie/main amd64 libpng16-16t64 amd64 1.6.44-2 [280 kB] Get: 69 http://deb.debian.org/debian trixie/main amd64 libfreetype6 amd64 2.13.3+dfsg-1 [452 kB] Get: 70 http://deb.debian.org/debian trixie/main amd64 x11-common all 1:7.7+23.1 [216 kB] Get: 71 http://deb.debian.org/debian trixie/main amd64 xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get: 72 http://deb.debian.org/debian trixie/main amd64 xfonts-utils amd64 1:7.7+7 [93.3 kB] Get: 73 http://deb.debian.org/debian trixie/main amd64 fonts-urw-base35 all 20200910-8 [10.8 MB] Get: 74 http://deb.debian.org/debian trixie/main amd64 fontconfig-config amd64 2.15.0-1.1+b1 [318 kB] Get: 75 http://deb.debian.org/debian trixie/main amd64 libblas3 amd64 3.12.0-3+b1 [152 kB] Get: 76 http://deb.debian.org/debian trixie/main amd64 libfontconfig1 amd64 2.15.0-1.1+b1 [391 kB] Get: 77 http://deb.debian.org/debian trixie/main amd64 libpixman-1-0 amd64 0.44.0-3 [248 kB] Get: 78 http://deb.debian.org/debian trixie/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB] Get: 79 http://deb.debian.org/debian trixie/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB] Get: 80 http://deb.debian.org/debian trixie/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB] Get: 81 http://deb.debian.org/debian trixie/main amd64 libx11-data all 2:1.8.10-2 [337 kB] Get: 82 http://deb.debian.org/debian trixie/main amd64 libx11-6 amd64 2:1.8.10-2 [813 kB] Get: 83 http://deb.debian.org/debian trixie/main amd64 libxcb-render0 amd64 1.17.0-2+b1 [115 kB] Get: 84 http://deb.debian.org/debian trixie/main amd64 libxcb-shm0 amd64 1.17.0-2+b1 [105 kB] Get: 85 http://deb.debian.org/debian trixie/main amd64 libxext6 amd64 2:1.3.4-1+b2 [50.5 kB] Get: 86 http://deb.debian.org/debian trixie/main amd64 libxrender1 amd64 1:0.9.10-1.1+b2 [27.8 kB] Get: 87 http://deb.debian.org/debian trixie/main amd64 libcairo2 amd64 1.18.2-2 [535 kB] Get: 88 http://deb.debian.org/debian trixie/main amd64 libdeflate0 amd64 1.22-1 [47.3 kB] Get: 89 http://deb.debian.org/debian trixie/main amd64 libfribidi0 amd64 1.0.15-1 [71.8 kB] Get: 90 http://deb.debian.org/debian trixie/main amd64 libgfortran5 amd64 14.2.0-8 [836 kB] Get: 91 http://deb.debian.org/debian trixie/main amd64 libglib2.0-0t64 amd64 2.82.2-2 [1501 kB] Get: 92 http://deb.debian.org/debian trixie/main amd64 libgraphite2-3 amd64 1.3.14-2+b1 [75.4 kB] Get: 93 http://deb.debian.org/debian trixie/main amd64 libharfbuzz0b amd64 10.0.1-1 [477 kB] Get: 94 http://deb.debian.org/debian trixie/main amd64 libimagequant0 amd64 2.18.0-1+b2 [35.2 kB] Get: 95 http://deb.debian.org/debian trixie/main amd64 libjbig0 amd64 2.1-6.1+b2 [32.1 kB] Get: 96 http://deb.debian.org/debian trixie/main amd64 libjpeg62-turbo amd64 1:2.1.5-3+b1 [168 kB] Get: 97 http://deb.debian.org/debian trixie/main amd64 liblapack3 amd64 3.12.0-3+b1 [2450 kB] Get: 98 http://deb.debian.org/debian trixie/main amd64 liblcms2-2 amd64 2.16-2 [160 kB] Get: 99 http://deb.debian.org/debian trixie/main amd64 liblerc4 amd64 4.0.0+ds-5 [183 kB] Get: 100 http://deb.debian.org/debian trixie/main amd64 libopenjp2-7 amd64 2.5.0-2+b4 [199 kB] Get: 101 http://deb.debian.org/debian trixie/main amd64 libraqm0 amd64 0.10.1-1+b2 [14.1 kB] Get: 102 http://deb.debian.org/debian trixie/main amd64 libsharpyuv0 amd64 1.4.0-0.1+b1 [113 kB] Get: 103 http://deb.debian.org/debian trixie/main amd64 libwebp7 amd64 1.4.0-0.1+b1 [313 kB] Get: 104 http://deb.debian.org/debian trixie/main amd64 libtiff6 amd64 4.5.1+git230720-5 [324 kB] Get: 105 http://deb.debian.org/debian trixie/main amd64 libwebpdemux2 amd64 1.4.0-0.1+b1 [111 kB] Get: 106 http://deb.debian.org/debian trixie/main amd64 libwebpmux3 amd64 1.4.0-0.1+b1 [123 kB] Get: 107 http://deb.debian.org/debian trixie/main amd64 python3-numpy amd64 1:1.26.4+ds-12 [4738 kB] Get: 108 http://deb.debian.org/debian trixie/main amd64 python3-chardet all 5.2.0+dfsg-1 [107 kB] Get: 109 http://deb.debian.org/debian trixie/main amd64 python3-pil amd64 10.4.0-1+b1 [522 kB] Get: 110 http://deb.debian.org/debian trixie/main amd64 python3-cairo amd64 1.26.1-2+b1 [130 kB] Get: 111 http://deb.debian.org/debian trixie/main amd64 python3-freetype all 2.5.1-1 [89.3 kB] Get: 112 http://deb.debian.org/debian trixie/main amd64 python3-rlpycairo all 0.3.0-3 [9904 B] Get: 113 http://deb.debian.org/debian trixie/main amd64 python3-reportlab all 4.2.5-1 [1117 kB] Get: 114 http://deb.debian.org/debian trixie/main amd64 xml-core all 0.19 [20.1 kB] Get: 115 http://deb.debian.org/debian trixie/main amd64 w3c-sgml-lib all 1.3-3 [273 kB] Get: 116 http://deb.debian.org/debian trixie/main amd64 python3-biopython amd64 1.84+dfsg-4+b1 [1651 kB] Fetched 61.5 MB in 1s (72.4 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.12-minimal:amd64. 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Preparing to unpack .../python3.12-minimal_3.12.7-3_amd64.deb ... Unpacking python3.12-minimal (3.12.7-3) ... Setting up libpython3.12-minimal:amd64 (3.12.7-3) ... Setting up libexpat1:amd64 (2.6.4-1) ... Setting up python3.12-minimal (3.12.7-3) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20289 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.12.6-1_amd64.deb ... 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Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ... Selecting previously unselected package libnsl2:amd64. Preparing to unpack .../12-libnsl2_1.3.0-3+b3_amd64.deb ... Unpacking libnsl2:amd64 (1.3.0-3+b3) ... Selecting previously unselected package readline-common. Preparing to unpack .../13-readline-common_8.2-5_all.deb ... Unpacking readline-common (8.2-5) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../14-libreadline8t64_8.2-5_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-5) ... Selecting previously unselected package libpython3.12-stdlib:amd64. Preparing to unpack .../15-libpython3.12-stdlib_3.12.7-3_amd64.deb ... Unpacking libpython3.12-stdlib:amd64 (3.12.7-3) ... Selecting previously unselected package python3.12. Preparing to unpack .../16-python3.12_3.12.7-3_amd64.deb ... Unpacking python3.12 (3.12.7-3) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../17-libpython3-stdlib_3.12.6-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.12.6-1) ... Setting up python3-minimal (3.12.6-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21351 files and directories currently installed.) Preparing to unpack .../00-python3_3.12.6-1_amd64.deb ... Unpacking python3 (3.12.6-1) ... Selecting previously unselected package sgml-base. 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Selecting previously unselected package libxcb-render0:amd64. Preparing to unpack .../61-libxcb-render0_1.17.0-2+b1_amd64.deb ... Unpacking libxcb-render0:amd64 (1.17.0-2+b1) ... Selecting previously unselected package libxcb-shm0:amd64. Preparing to unpack .../62-libxcb-shm0_1.17.0-2+b1_amd64.deb ... Unpacking libxcb-shm0:amd64 (1.17.0-2+b1) ... Selecting previously unselected package libxext6:amd64. Preparing to unpack .../63-libxext6_2%3a1.3.4-1+b2_amd64.deb ... Unpacking libxext6:amd64 (2:1.3.4-1+b2) ... Selecting previously unselected package libxrender1:amd64. Preparing to unpack .../64-libxrender1_1%3a0.9.10-1.1+b2_amd64.deb ... Unpacking libxrender1:amd64 (1:0.9.10-1.1+b2) ... Selecting previously unselected package libcairo2:amd64. Preparing to unpack .../65-libcairo2_1.18.2-2_amd64.deb ... Unpacking libcairo2:amd64 (1.18.2-2) ... Selecting previously unselected package libdeflate0:amd64. Preparing to unpack .../66-libdeflate0_1.22-1_amd64.deb ... 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Preparing to unpack .../72-libimagequant0_2.18.0-1+b2_amd64.deb ... Unpacking libimagequant0:amd64 (2.18.0-1+b2) ... Selecting previously unselected package libjbig0:amd64. Preparing to unpack .../73-libjbig0_2.1-6.1+b2_amd64.deb ... Unpacking libjbig0:amd64 (2.1-6.1+b2) ... Selecting previously unselected package libjpeg62-turbo:amd64. Preparing to unpack .../74-libjpeg62-turbo_1%3a2.1.5-3+b1_amd64.deb ... Unpacking libjpeg62-turbo:amd64 (1:2.1.5-3+b1) ... Selecting previously unselected package liblapack3:amd64. Preparing to unpack .../75-liblapack3_3.12.0-3+b1_amd64.deb ... Unpacking liblapack3:amd64 (3.12.0-3+b1) ... Selecting previously unselected package liblcms2-2:amd64. Preparing to unpack .../76-liblcms2-2_2.16-2_amd64.deb ... Unpacking liblcms2-2:amd64 (2.16-2) ... Selecting previously unselected package liblerc4:amd64. Preparing to unpack .../77-liblerc4_4.0.0+ds-5_amd64.deb ... Unpacking liblerc4:amd64 (4.0.0+ds-5) ... Selecting previously unselected package libopenjp2-7:amd64. Preparing to unpack .../78-libopenjp2-7_2.5.0-2+b4_amd64.deb ... Unpacking libopenjp2-7:amd64 (2.5.0-2+b4) ... Selecting previously unselected package libraqm0:amd64. Preparing to unpack .../79-libraqm0_0.10.1-1+b2_amd64.deb ... Unpacking libraqm0:amd64 (0.10.1-1+b2) ... Selecting previously unselected package libsharpyuv0:amd64. Preparing to unpack .../80-libsharpyuv0_1.4.0-0.1+b1_amd64.deb ... Unpacking libsharpyuv0:amd64 (1.4.0-0.1+b1) ... Selecting previously unselected package libwebp7:amd64. Preparing to unpack .../81-libwebp7_1.4.0-0.1+b1_amd64.deb ... Unpacking libwebp7:amd64 (1.4.0-0.1+b1) ... Selecting previously unselected package libtiff6:amd64. Preparing to unpack .../82-libtiff6_4.5.1+git230720-5_amd64.deb ... Unpacking libtiff6:amd64 (4.5.1+git230720-5) ... Selecting previously unselected package libwebpdemux2:amd64. Preparing to unpack .../83-libwebpdemux2_1.4.0-0.1+b1_amd64.deb ... Unpacking libwebpdemux2:amd64 (1.4.0-0.1+b1) ... Selecting previously unselected package libwebpmux3:amd64. Preparing to unpack .../84-libwebpmux3_1.4.0-0.1+b1_amd64.deb ... Unpacking libwebpmux3:amd64 (1.4.0-0.1+b1) ... Selecting previously unselected package python3-numpy. Preparing to unpack .../85-python3-numpy_1%3a1.26.4+ds-12_amd64.deb ... Unpacking python3-numpy (1:1.26.4+ds-12) ... Selecting previously unselected package python3-chardet. Preparing to unpack .../86-python3-chardet_5.2.0+dfsg-1_all.deb ... Unpacking python3-chardet (5.2.0+dfsg-1) ... Selecting previously unselected package python3-pil:amd64. Preparing to unpack .../87-python3-pil_10.4.0-1+b1_amd64.deb ... Unpacking python3-pil:amd64 (10.4.0-1+b1) ... Selecting previously unselected package python3-cairo. Preparing to unpack .../88-python3-cairo_1.26.1-2+b1_amd64.deb ... Unpacking python3-cairo (1.26.1-2+b1) ... Selecting previously unselected package python3-freetype. Preparing to unpack .../89-python3-freetype_2.5.1-1_all.deb ... Unpacking python3-freetype (2.5.1-1) ... Selecting previously unselected package python3-rlpycairo. Preparing to unpack .../90-python3-rlpycairo_0.3.0-3_all.deb ... Unpacking python3-rlpycairo (0.3.0-3) ... Selecting previously unselected package python3-reportlab. Preparing to unpack .../91-python3-reportlab_4.2.5-1_all.deb ... Unpacking python3-reportlab (4.2.5-1) ... Selecting previously unselected package xml-core. Preparing to unpack .../92-xml-core_0.19_all.deb ... Unpacking xml-core (0.19) ... Selecting previously unselected package w3c-sgml-lib. Preparing to unpack .../93-w3c-sgml-lib_1.3-3_all.deb ... Unpacking w3c-sgml-lib (1.3-3) ... Selecting previously unselected package python3-biopython. Preparing to unpack .../94-python3-biopython_1.84+dfsg-4+b1_amd64.deb ... Unpacking python3-biopython (1.84+dfsg-4+b1) ... Setting up media-types (10.1.0) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up libgraphite2-3:amd64 (1.3.14-2+b1) ... Setting up liblcms2-2:amd64 (2.16-2) ... Setting up libpixman-1-0:amd64 (0.44.0-3) ... Setting up libsharpyuv0:amd64 (1.4.0-0.1+b1) ... Setting up libxau6:amd64 (1:1.0.11-1) ... Setting up libxdmcp6:amd64 (1:1.1.5-1) ... Setting up libkeyutils1:amd64 (1.6.3-4) ... Setting up libxcb1:amd64 (1.17.0-2+b1) ... Setting up libicu72:amd64 (72.1-5+b1) ... Setting up liblerc4:amd64 (4.0.0+ds-5) ... Setting up bsdextrautils (2.40.2-11) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libxcb-render0:amd64 (1.17.0-2+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libtirpc-common (1.3.4+ds-1.3) ... Setting up libdebhelper-perl (13.20) ... Setting up libbrotli1:amd64 (1.1.0-2+b6) ... Setting up libmagic1t64:amd64 (1:5.45-3+b1) ... Setting up x11-common (1:7.7+23.1) ... invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libdeflate0:amd64 (1.22-1) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up libxcb-shm0:amd64 (1.17.0-2+b1) ... Setting up libcom-err2:amd64 (1.47.1-1+b1) ... Setting up file (1:5.45-3+b1) ... Setting up libjbig0:amd64 (2.1-6.1+b2) ... Setting up libelf1t64:amd64 (0.192-4) ... Setting up libkrb5support0:amd64 (1.21.3-3) ... Setting up tzdata (2024b-3) ... Current default time zone: 'Etc/UTC' Local time is now: Sun Nov 24 16:28:32 UTC 2024. Universal Time is now: Sun Nov 24 16:28:32 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libfontenc1:amd64 (1:1.1.8-1+b1) ... Setting up autotools-dev (20220109.1) ... Setting up libglib2.0-0t64:amd64 (2.82.2-2) ... No schema files found: doing nothing. Setting up libblas3:amd64 (3.12.0-3+b1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libjpeg62-turbo:amd64 (1:2.1.5-3+b1) ... Setting up libx11-data (2:1.8.10-2) ... Setting up xfonts-encodings (1:1.0.4-2.2) ... Setting up libfribidi0:amd64 (1.0.15-1) ... Setting up libimagequant0:amd64 (2.18.0-1+b2) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libpng16-16t64:amd64 (1.6.44-2) ... Setting up autopoint (0.22.5-2) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up libk5crypto3:amd64 (1.21.3-3) ... Setting up libgfortran5:amd64 (14.2.0-8) ... Setting up autoconf (2.72-3) ... Setting up libwebp7:amd64 (1.4.0-0.1+b1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libtiff6:amd64 (4.5.1+git230720-5) ... Setting up libuchardet0:amd64 (0.0.8-1+b2) ... Setting up libopenjp2-7:amd64 (2.5.0-2+b4) ... Setting up libx11-6:amd64 (2:1.8.10-2) ... Setting up netbase (6.4) ... Setting up sgml-base (1.31) ... Setting up libkrb5-3:amd64 (1.21.3-3) ... Setting up libwebpmux3:amd64 (1.4.0-0.1+b1) ... Setting up readline-common (8.2-5) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up liblapack3:amd64 (3.12.0-3+b1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up gettext (0.22.5-2) ... Setting up libxrender1:amd64 (1:0.9.10-1.1+b2) ... Setting up libtool (2.4.7-8) ... Setting up fontconfig-config (2.15.0-1.1+b1) ... Setting up libwebpdemux2:amd64 (1.4.0-0.1+b1) ... Setting up libxext6:amd64 (2:1.3.4-1+b2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libfreetype6:amd64 (2.13.3+dfsg-1) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-3) ... Setting up libreadline8t64:amd64 (8.2-5) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up xml-core (0.19) ... Setting up libharfbuzz0b:amd64 (10.0.1-1) ... Setting up libfontconfig1:amd64 (2.15.0-1.1+b1) ... Setting up libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up xfonts-utils (1:7.7+7) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libcairo2:amd64 (1.18.2-2) ... Setting up libraqm0:amd64 (0.10.1-1+b2) ... Setting up libnsl2:amd64 (1.3.0-3+b3) ... Setting up libpython3.12-stdlib:amd64 (3.12.7-3) ... Setting up python3.12 (3.12.7-3) ... Setting up debhelper (13.20) ... Setting up fonts-urw-base35 (20200910-8) ... Setting up libpython3-stdlib:amd64 (3.12.6-1) ... Setting up python3 (3.12.6-1) ... Setting up python3-zipp (3.21.0-1) ... Setting up python3-freetype (2.5.1-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up python3-pil:amd64 (10.4.0-1+b1) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up python3-more-itertools (10.5.0-1) ... Setting up python3-cairo (1.26.1-2+b1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up python3-typeguard (4.4.1-1) ... Setting up python3-inflect (7.3.1-2) ... Setting up python3-rlpycairo (0.3.0-3) ... Setting up python3-pkg-resources (74.1.2-2) ... Setting up python3-setuptools (74.1.2-2) ... Setting up python3-chardet (5.2.0+dfsg-1) ... Setting up python3-numpy (1:1.26.4+ds-12) ... Setting up python3-reportlab (4.2.5-1) ... Setting up dh-python (6.20241024) ... Processing triggers for libc-bin (2.40-3) ... Processing triggers for sgml-base (1.31) ... Setting up w3c-sgml-lib (1.3-3) ... Setting up python3-biopython (1.84+dfsg-4+b1) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/python-cgecore-1.5.6+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-cgecore_1.5.6+ds-1_source.changes dpkg-buildpackage: info: source package python-cgecore dpkg-buildpackage: info: source version 1.5.6+ds-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Steffen Moeller dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --with python3 --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/python-cgecore-1.5.6+ds' dh_auto_clean I: pybuild base:311: python3.12 setup.py clean running clean removing '/build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.12' does not exist -- can't clean it rm -rf cgecore.egg-info make[1]: Leaving directory '/build/reproducible-path/python-cgecore-1.5.6+ds' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.12 setup.py config running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py build running build running build_py creating /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore copying cgecore/argumentparsing.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore copying cgecore/__init__.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore copying cgecore/utility.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore copying cgecore/cmdline.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore copying cgecore/alignment.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore copying cgecore/cgefinder.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore creating /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/blaster copying cgecore/blaster/__init__.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/blaster copying cgecore/blaster/blaster.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/blaster copying cgecore/blaster/run_blaster.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/blaster creating /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/organisminfo copying cgecore/organisminfo/__init__.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/organisminfo copying cgecore/organisminfo/gramstain.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/organisminfo copying cgecore/organisminfo/species.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/organisminfo copying cgecore/organisminfo/gram_neg.txt -> /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/organisminfo copying cgecore/organisminfo/gram_pos.txt -> /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/organisminfo dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: cd /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build; python3.12 -m unittest discover -v /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/utility.py:137: SyntaxWarning: invalid escape sequence '\{' """ /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/utility.py:491: SyntaxWarning: invalid escape sequence '\w' src = re.sub('[^\w/\-\.\*]', '', src) /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/utility.py:492: SyntaxWarning: invalid escape sequence '\w' dst = re.sub('[^\w/\-\.\*]', '', dst) /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/utility.py:493: SyntaxWarning: invalid escape sequence '\W' if len(re.sub('[\W]', '', src)) < 5 or len(re.sub('[\W]', '', dst)) < 5: /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/utility.py:493: SyntaxWarning: invalid escape sequence '\W' if len(re.sub('[\W]', '', src)) < 5 or len(re.sub('[\W]', '', dst)) < 5: /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/utility.py:520: SyntaxWarning: invalid escape sequence '\w' invalid_chars = re.findall('[^\w/\-\.\*]', os.path.basename(file_)) /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/utility.py:539: SyntaxWarning: invalid escape sequence '\w' src = re.sub('[^\w/\-\.\*]', '', src) /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/utility.py:540: SyntaxWarning: invalid escape sequence '\w' dst = re.sub('[^\w/\-\.\*]', '', dst) /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/utility.py:541: SyntaxWarning: invalid escape sequence '\W' if len(re.sub('[\W]', '', src)) < 5 or len(re.sub('[\W]', '', dst)) < 5: /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/utility.py:541: SyntaxWarning: invalid escape sequence '\W' if len(re.sub('[\W]', '', src)) < 5 or len(re.sub('[\W]', '', dst)) < 5: ---------------------------------------------------------------------- Ran 0 tests in 0.000s NO TESTS RAN create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/python3-cgecore/ -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running install_lib creating /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr creating /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib creating /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12 creating /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages creating /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/argumentparsing.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/__init__.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/utility.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore creating /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/__pycache__ copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/__pycache__/cmdline.cpython-312.pyc -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/__pycache__ copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/__pycache__/utility.cpython-312.pyc -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/__pycache__ copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/__pycache__ copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/__pycache__/argumentparsing.cpython-312.pyc -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/__pycache__ creating /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/blaster copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/blaster/__init__.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/blaster copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/blaster/blaster.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/blaster creating /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/blaster/__pycache__ copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/blaster/__pycache__/blaster.cpython-312.pyc -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/blaster/__pycache__ copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/blaster/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/blaster/__pycache__ copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/blaster/run_blaster.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/blaster copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/cmdline.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/alignment.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore creating /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/organisminfo copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/organisminfo/__init__.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/organisminfo copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/organisminfo/gramstain.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/organisminfo copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/organisminfo/gram_neg.txt -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/organisminfo creating /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/organisminfo/__pycache__ copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/organisminfo/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/organisminfo/__pycache__ copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/organisminfo/species.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/organisminfo copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/organisminfo/gram_pos.txt -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/organisminfo copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/cgefinder.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore byte-compiling /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/argumentparsing.py to argumentparsing.cpython-312.pyc byte-compiling /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/utility.py to utility.cpython-312.pyc /usr/lib/python3.12/dist-packages/cgecore/utility.py:137: SyntaxWarning: invalid escape sequence '\{' /usr/lib/python3.12/dist-packages/cgecore/utility.py:491: SyntaxWarning: invalid escape sequence '\w' /usr/lib/python3.12/dist-packages/cgecore/utility.py:492: SyntaxWarning: invalid escape sequence '\w' /usr/lib/python3.12/dist-packages/cgecore/utility.py:493: SyntaxWarning: invalid escape sequence '\W' /usr/lib/python3.12/dist-packages/cgecore/utility.py:493: SyntaxWarning: invalid escape sequence '\W' /usr/lib/python3.12/dist-packages/cgecore/utility.py:520: SyntaxWarning: invalid escape sequence '\w' /usr/lib/python3.12/dist-packages/cgecore/utility.py:539: SyntaxWarning: invalid escape sequence '\w' /usr/lib/python3.12/dist-packages/cgecore/utility.py:540: SyntaxWarning: invalid escape sequence '\w' /usr/lib/python3.12/dist-packages/cgecore/utility.py:541: SyntaxWarning: invalid escape sequence '\W' /usr/lib/python3.12/dist-packages/cgecore/utility.py:541: SyntaxWarning: invalid escape sequence '\W' byte-compiling /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/blaster/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/blaster/blaster.py to blaster.cpython-312.pyc byte-compiling /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/blaster/run_blaster.py to run_blaster.cpython-312.pyc byte-compiling /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/cmdline.py to cmdline.cpython-312.pyc byte-compiling /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/alignment.py to alignment.cpython-312.pyc byte-compiling /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/organisminfo/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/organisminfo/gramstain.py to gramstain.cpython-312.pyc byte-compiling /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/organisminfo/species.py to species.cpython-312.pyc byte-compiling /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/cgefinder.py to cgefinder.cpython-312.pyc /usr/lib/python3.12/dist-packages/cgecore/cgefinder.py:242: SyntaxWarning: invalid escape sequence '\w' /usr/lib/python3.12/dist-packages/cgecore/cgefinder.py:243: SyntaxWarning: invalid escape sequence '\w' running install_egg_info running egg_info creating cgecore.egg-info writing cgecore.egg-info/PKG-INFO writing dependency_links to cgecore.egg-info/dependency_links.txt writing top-level names to cgecore.egg-info/top_level.txt writing manifest file 'cgecore.egg-info/SOURCES.txt' reading manifest file 'cgecore.egg-info/SOURCES.txt' writing manifest file 'cgecore.egg-info/SOURCES.txt' Copying cgecore.egg-info to /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore-1.5.6.egg-info Skipping SOURCES.txt running install_scripts dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-cgecore' in '../python3-cgecore_1.5.6+ds-1_all.deb'. dpkg-genbuildinfo --build=binary -O../python-cgecore_1.5.6+ds-1_amd64.buildinfo dpkg-genchanges --build=binary -O../python-cgecore_1.5.6+ds-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3961677 and its subdirectories I: Current time: Sun Nov 24 04:30:00 -12 2024 I: pbuilder-time-stamp: 1732465800 Sun Nov 24 16:30:02 UTC 2024 I: 1st build successful. Starting 2nd build on remote node ionos15-amd64.debian.net. Sun Nov 24 16:30:02 UTC 2024 I: Preparing to do remote build '2' on ionos15-amd64.debian.net. Sun Nov 24 16:30:02 UTC 2024 - checking /var/lib/jenkins/offline_nodes if ionos15-amd64.debian.net is marked as down. Sun Nov 24 16:30:02 UTC 2024 - checking via ssh if ionos15-amd64.debian.net is up. removed '/tmp/read-only-fs-test-dCX69O' ==================================================================================== Sat Dec 27 22:53:04 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos15-amd64, called using "2 python-cgecore trixie /srv/reproducible-results/rbuild-debian/r-b-build.4OYPMk8L 1.5.6+ds-1" as arguments. Sat Dec 27 22:53:04 UTC 2025 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-u7dEOBnG" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Sat Dec 27 22:53:04 UTC 2025 I: Downloading source for trixie/python-cgecore=1.5.6+ds-1 Reading package lists... NOTICE: 'python-cgecore' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/python-cgecore.git Please use: git clone https://salsa.debian.org/med-team/python-cgecore.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 30.3 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main python-cgecore 1.5.6+ds-1 (dsc) [2142 B] Get:2 http://deb.debian.org/debian trixie/main python-cgecore 1.5.6+ds-1 (tar) [26.3 kB] Get:3 http://deb.debian.org/debian trixie/main python-cgecore 1.5.6+ds-1 (diff) [1844 B] Fetched 30.3 kB in 0s (1012 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'python-cgecore' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/python-cgecore.git Please use: git clone https://salsa.debian.org/med-team/python-cgecore.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 30.3 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main python-cgecore 1.5.6+ds-1 (dsc) [2142 B] Get:2 http://deb.debian.org/debian trixie/main python-cgecore 1.5.6+ds-1 (tar) [26.3 kB] Get:3 http://deb.debian.org/debian trixie/main python-cgecore 1.5.6+ds-1 (diff) [1844 B] Fetched 30.3 kB in 0s (1012 kB/s) Download complete and in download only mode ============================================================================= Re-Building python-cgecore in trixie on amd64 on ionos15-amd64 now. Date: Sat Dec 27 22:53:05 UTC 2025 Date UTC: Sat Dec 27 22:53:05 UTC 2025 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.4OYPMk8L + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.4OYPMk8L/pbuilderrc_cKqX + case ${ARCH} in + case $ARCH in + locale=et_EE + language=et + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' python-cgecore = debian-installer -o python-cgecore = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' python-cgecore = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.4OYPMk8L/pbuilderrc_cKqX --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.4OYPMk8L/b2 --logfile b2/build.log python-cgecore_1.5.6+ds-1.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Sun Dec 28 12:53:05 +14 2025 I: pbuilder-time-stamp: 1766875985 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [python-cgecore_1.5.6+ds-1.dsc] I: copying [./python-cgecore_1.5.6+ds.orig.tar.xz] I: copying [./python-cgecore_1.5.6+ds-1.debian.tar.xz] I: Extracting source gpgv: Signature made Fri Nov 27 21:48:24 2020 gpgv: using RSA key 84C1977A89E7EFED3E5CA62E2FD8BEDAC020EED1 gpgv: issuer "moeller@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./python-cgecore_1.5.6+ds-1.dsc: no acceptable signature found dpkg-source: info: extracting python-cgecore in python-cgecore-1.5.6+ds dpkg-source: info: unpacking python-cgecore_1.5.6+ds.orig.tar.xz dpkg-source: info: unpacking python-cgecore_1.5.6+ds-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3606145/tmp/hooks/D01_modify_environment starting debug: Running on ionos15-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Dec 27 22:53 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/3606145/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/3606145/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.2.32(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DIRSTACK=() DISTRIBUTION=trixie EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=87180ed1595f43de8e340e0b36ec2da9 LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=3606145 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.4OYPMk8L/pbuilderrc_cKqX --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.4OYPMk8L/b2 --logfile b2/build.log python-cgecore_1.5.6+ds-1.dsc' SUDO_GID=111 SUDO_UID=106 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://213.165.73.152:3128 I: uname -a Linux i-capture-the-hostname 6.11.5+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.11.5-1~bpo12+1 (2024-11-11) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3606145/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, python3, python3-setuptools, python3-biopython dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19969 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3; however: Package python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-biopython; however: Package python3-biopython is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-urw-base35{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libcairo2{a} libcom-err2{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfontenc1{a} libfreetype6{a} libfribidi0{a} libgfortran5{a} libglib2.0-0t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libicu72{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} liblcms2-2{a} liblerc4{a} libmagic-mgc{a} libmagic1t64{a} libnsl2{a} libopenjp2-7{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libraqm0{a} libreadline8t64{a} libsharpyuv0{a} libtiff6{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxml2{a} libxrender1{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-autocommand{a} python3-biopython{a} python3-cairo{a} python3-chardet{a} python3-freetype{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-minimal{a} python3-more-itertools{a} python3-numpy{a} python3-pil{a} python3-pkg-resources{a} python3-reportlab{a} python3-rlpycairo{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.12{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} tzdata{a} w3c-sgml-lib{a} x11-common{a} xfonts-encodings{a} xfonts-utils{a} xml-core{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl fonts-dejavu-extra krb5-locales libarchive-cpio-perl libglib2.0-data libltdl-dev libmail-sendmail-perl lynx ncbi-blast+ python-biopython-doc python3-olefile shared-mime-info wget xdg-user-dirs 0 packages upgraded, 116 newly installed, 0 to remove and 0 not upgraded. Need to get 61.5 MB of archives. After unpacking 227 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 libpython3.12-minimal amd64 3.12.7-3 [815 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.6.4-1 [106 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 python3.12-minimal amd64 3.12.7-3 [2162 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 python3-minimal amd64 3.12.6-1 [26.7 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 tzdata all 2024b-3 [255 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 libkrb5support0 amd64 1.21.3-3 [32.5 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 libcom-err2 amd64 1.47.1-1+b1 [23.2 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 libk5crypto3 amd64 1.21.3-3 [79.9 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get: 12 http://deb.debian.org/debian trixie/main amd64 libkrb5-3 amd64 1.21.3-3 [324 kB] Get: 13 http://deb.debian.org/debian trixie/main amd64 libgssapi-krb5-2 amd64 1.21.3-3 [136 kB] Get: 14 http://deb.debian.org/debian trixie/main amd64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 15 http://deb.debian.org/debian trixie/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.3+b1 [83.1 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 libnsl2 amd64 1.3.0-3+b3 [40.6 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 readline-common all 8.2-5 [69.3 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 libreadline8t64 amd64 8.2-5 [169 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 libpython3.12-stdlib amd64 3.12.7-3 [1966 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 python3.12 amd64 3.12.7-3 [671 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 libpython3-stdlib amd64 3.12.6-1 [9692 B] Get: 22 http://deb.debian.org/debian trixie/main amd64 python3 amd64 3.12.6-1 [27.8 kB] Get: 23 http://deb.debian.org/debian trixie/main amd64 sgml-base all 1.31 [15.4 kB] Get: 24 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get: 26 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get: 27 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get: 28 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.22.5-2 [200 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 30 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-5 [1181 kB] Get: 31 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.40.2-11 [91.5 kB] Get: 32 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 33 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 34 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 35 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.72-3 [493 kB] Get: 36 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 37 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 38 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.22.5-2 [723 kB] Get: 39 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.20 [89.7 kB] Get: 40 http://deb.debian.org/debian trixie/main amd64 libtool all 2.4.7-8 [517 kB] Get: 41 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 42 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 43 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 44 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 45 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 46 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 47 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-5+b1 [9423 kB] Get: 48 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB] Get: 49 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.22.5-2 [1601 kB] Get: 50 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 51 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 52 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.20 [915 kB] Get: 53 http://deb.debian.org/debian trixie/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 54 http://deb.debian.org/debian trixie/main amd64 python3-more-itertools all 10.5.0-1 [63.8 kB] Get: 55 http://deb.debian.org/debian trixie/main amd64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 56 http://deb.debian.org/debian trixie/main amd64 python3-typeguard all 4.4.1-1 [37.0 kB] Get: 57 http://deb.debian.org/debian trixie/main amd64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 58 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 59 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 60 http://deb.debian.org/debian trixie/main amd64 python3-pkg-resources all 74.1.2-2 [213 kB] Get: 61 http://deb.debian.org/debian trixie/main amd64 python3-zipp all 3.21.0-1 [10.6 kB] Get: 62 http://deb.debian.org/debian trixie/main amd64 python3-setuptools all 74.1.2-2 [736 kB] Get: 63 http://deb.debian.org/debian trixie/main amd64 dh-python all 6.20241024 [109 kB] Get: 64 http://deb.debian.org/debian trixie/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 65 http://deb.debian.org/debian trixie/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 66 http://deb.debian.org/debian trixie/main amd64 libfontenc1 amd64 1:1.1.8-1+b1 [23.3 kB] Get: 67 http://deb.debian.org/debian trixie/main amd64 libbrotli1 amd64 1.1.0-2+b6 [302 kB] Get: 68 http://deb.debian.org/debian trixie/main amd64 libpng16-16t64 amd64 1.6.44-2 [280 kB] Get: 69 http://deb.debian.org/debian trixie/main amd64 libfreetype6 amd64 2.13.3+dfsg-1 [452 kB] Get: 70 http://deb.debian.org/debian trixie/main amd64 x11-common all 1:7.7+23.1 [216 kB] Get: 71 http://deb.debian.org/debian trixie/main amd64 xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get: 72 http://deb.debian.org/debian trixie/main amd64 xfonts-utils amd64 1:7.7+7 [93.3 kB] Get: 73 http://deb.debian.org/debian trixie/main amd64 fonts-urw-base35 all 20200910-8 [10.8 MB] Get: 74 http://deb.debian.org/debian trixie/main amd64 fontconfig-config amd64 2.15.0-1.1+b1 [318 kB] Get: 75 http://deb.debian.org/debian trixie/main amd64 libblas3 amd64 3.12.0-3+b1 [152 kB] Get: 76 http://deb.debian.org/debian trixie/main amd64 libfontconfig1 amd64 2.15.0-1.1+b1 [391 kB] Get: 77 http://deb.debian.org/debian trixie/main amd64 libpixman-1-0 amd64 0.44.0-3 [248 kB] Get: 78 http://deb.debian.org/debian trixie/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB] Get: 79 http://deb.debian.org/debian trixie/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB] Get: 80 http://deb.debian.org/debian trixie/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB] Get: 81 http://deb.debian.org/debian trixie/main amd64 libx11-data all 2:1.8.10-2 [337 kB] Get: 82 http://deb.debian.org/debian trixie/main amd64 libx11-6 amd64 2:1.8.10-2 [813 kB] Get: 83 http://deb.debian.org/debian trixie/main amd64 libxcb-render0 amd64 1.17.0-2+b1 [115 kB] Get: 84 http://deb.debian.org/debian trixie/main amd64 libxcb-shm0 amd64 1.17.0-2+b1 [105 kB] Get: 85 http://deb.debian.org/debian trixie/main amd64 libxext6 amd64 2:1.3.4-1+b2 [50.5 kB] Get: 86 http://deb.debian.org/debian trixie/main amd64 libxrender1 amd64 1:0.9.10-1.1+b2 [27.8 kB] Get: 87 http://deb.debian.org/debian trixie/main amd64 libcairo2 amd64 1.18.2-2 [535 kB] Get: 88 http://deb.debian.org/debian trixie/main amd64 libdeflate0 amd64 1.22-1 [47.3 kB] Get: 89 http://deb.debian.org/debian trixie/main amd64 libfribidi0 amd64 1.0.15-1 [71.8 kB] Get: 90 http://deb.debian.org/debian trixie/main amd64 libgfortran5 amd64 14.2.0-8 [836 kB] Get: 91 http://deb.debian.org/debian trixie/main amd64 libglib2.0-0t64 amd64 2.82.2-2 [1501 kB] Get: 92 http://deb.debian.org/debian trixie/main amd64 libgraphite2-3 amd64 1.3.14-2+b1 [75.4 kB] Get: 93 http://deb.debian.org/debian trixie/main amd64 libharfbuzz0b amd64 10.0.1-1 [477 kB] Get: 94 http://deb.debian.org/debian trixie/main amd64 libimagequant0 amd64 2.18.0-1+b2 [35.2 kB] Get: 95 http://deb.debian.org/debian trixie/main amd64 libjbig0 amd64 2.1-6.1+b2 [32.1 kB] Get: 96 http://deb.debian.org/debian trixie/main amd64 libjpeg62-turbo amd64 1:2.1.5-3+b1 [168 kB] Get: 97 http://deb.debian.org/debian trixie/main amd64 liblapack3 amd64 3.12.0-3+b1 [2450 kB] Get: 98 http://deb.debian.org/debian trixie/main amd64 liblcms2-2 amd64 2.16-2 [160 kB] Get: 99 http://deb.debian.org/debian trixie/main amd64 liblerc4 amd64 4.0.0+ds-5 [183 kB] Get: 100 http://deb.debian.org/debian trixie/main amd64 libopenjp2-7 amd64 2.5.0-2+b4 [199 kB] Get: 101 http://deb.debian.org/debian trixie/main amd64 libraqm0 amd64 0.10.1-1+b2 [14.1 kB] Get: 102 http://deb.debian.org/debian trixie/main amd64 libsharpyuv0 amd64 1.4.0-0.1+b1 [113 kB] Get: 103 http://deb.debian.org/debian trixie/main amd64 libwebp7 amd64 1.4.0-0.1+b1 [313 kB] Get: 104 http://deb.debian.org/debian trixie/main amd64 libtiff6 amd64 4.5.1+git230720-5 [324 kB] Get: 105 http://deb.debian.org/debian trixie/main amd64 libwebpdemux2 amd64 1.4.0-0.1+b1 [111 kB] Get: 106 http://deb.debian.org/debian trixie/main amd64 libwebpmux3 amd64 1.4.0-0.1+b1 [123 kB] Get: 107 http://deb.debian.org/debian trixie/main amd64 python3-numpy amd64 1:1.26.4+ds-12 [4738 kB] Get: 108 http://deb.debian.org/debian trixie/main amd64 python3-chardet all 5.2.0+dfsg-1 [107 kB] Get: 109 http://deb.debian.org/debian trixie/main amd64 python3-pil amd64 10.4.0-1+b1 [522 kB] Get: 110 http://deb.debian.org/debian trixie/main amd64 python3-cairo amd64 1.26.1-2+b1 [130 kB] Get: 111 http://deb.debian.org/debian trixie/main amd64 python3-freetype all 2.5.1-1 [89.3 kB] Get: 112 http://deb.debian.org/debian trixie/main amd64 python3-rlpycairo all 0.3.0-3 [9904 B] Get: 113 http://deb.debian.org/debian trixie/main amd64 python3-reportlab all 4.2.5-1 [1117 kB] Get: 114 http://deb.debian.org/debian trixie/main amd64 xml-core all 0.19 [20.1 kB] Get: 115 http://deb.debian.org/debian trixie/main amd64 w3c-sgml-lib all 1.3-3 [273 kB] Get: 116 http://deb.debian.org/debian trixie/main amd64 python3-biopython amd64 1.84+dfsg-4+b1 [1651 kB] Fetched 61.5 MB in 2s (29.6 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.12-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19969 files and directories currently installed.) Preparing to unpack .../libpython3.12-minimal_3.12.7-3_amd64.deb ... Unpacking libpython3.12-minimal:amd64 (3.12.7-3) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.6.4-1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.4-1) ... Selecting previously unselected package python3.12-minimal. 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Unpacking libwebpdemux2:amd64 (1.4.0-0.1+b1) ... Selecting previously unselected package libwebpmux3:amd64. Preparing to unpack .../84-libwebpmux3_1.4.0-0.1+b1_amd64.deb ... Unpacking libwebpmux3:amd64 (1.4.0-0.1+b1) ... Selecting previously unselected package python3-numpy. Preparing to unpack .../85-python3-numpy_1%3a1.26.4+ds-12_amd64.deb ... Unpacking python3-numpy (1:1.26.4+ds-12) ... Selecting previously unselected package python3-chardet. Preparing to unpack .../86-python3-chardet_5.2.0+dfsg-1_all.deb ... Unpacking python3-chardet (5.2.0+dfsg-1) ... Selecting previously unselected package python3-pil:amd64. Preparing to unpack .../87-python3-pil_10.4.0-1+b1_amd64.deb ... Unpacking python3-pil:amd64 (10.4.0-1+b1) ... Selecting previously unselected package python3-cairo. Preparing to unpack .../88-python3-cairo_1.26.1-2+b1_amd64.deb ... Unpacking python3-cairo (1.26.1-2+b1) ... Selecting previously unselected package python3-freetype. 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Setting up libgraphite2-3:amd64 (1.3.14-2+b1) ... Setting up liblcms2-2:amd64 (2.16-2) ... Setting up libpixman-1-0:amd64 (0.44.0-3) ... Setting up libsharpyuv0:amd64 (1.4.0-0.1+b1) ... Setting up libxau6:amd64 (1:1.0.11-1) ... Setting up libxdmcp6:amd64 (1:1.1.5-1) ... Setting up libkeyutils1:amd64 (1.6.3-4) ... Setting up libxcb1:amd64 (1.17.0-2+b1) ... Setting up libicu72:amd64 (72.1-5+b1) ... Setting up liblerc4:amd64 (4.0.0+ds-5) ... Setting up bsdextrautils (2.40.2-11) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libxcb-render0:amd64 (1.17.0-2+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libtirpc-common (1.3.4+ds-1.3) ... Setting up libdebhelper-perl (13.20) ... Setting up libbrotli1:amd64 (1.1.0-2+b6) ... Setting up libmagic1t64:amd64 (1:5.45-3+b1) ... Setting up x11-common (1:7.7+23.1) ... invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libdeflate0:amd64 (1.22-1) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up libxcb-shm0:amd64 (1.17.0-2+b1) ... Setting up libcom-err2:amd64 (1.47.1-1+b1) ... Setting up file (1:5.45-3+b1) ... Setting up libjbig0:amd64 (2.1-6.1+b2) ... Setting up libelf1t64:amd64 (0.192-4) ... Setting up libkrb5support0:amd64 (1.21.3-3) ... Setting up tzdata (2024b-3) ... Current default time zone: 'Etc/UTC' Local time is now: Sat Dec 27 22:54:59 UTC 2025. Universal Time is now: Sat Dec 27 22:54:59 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libfontenc1:amd64 (1:1.1.8-1+b1) ... Setting up autotools-dev (20220109.1) ... Setting up libglib2.0-0t64:amd64 (2.82.2-2) ... No schema files found: doing nothing. Setting up libblas3:amd64 (3.12.0-3+b1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libjpeg62-turbo:amd64 (1:2.1.5-3+b1) ... Setting up libx11-data (2:1.8.10-2) ... Setting up xfonts-encodings (1:1.0.4-2.2) ... Setting up libfribidi0:amd64 (1.0.15-1) ... Setting up libimagequant0:amd64 (2.18.0-1+b2) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libpng16-16t64:amd64 (1.6.44-2) ... Setting up autopoint (0.22.5-2) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up libk5crypto3:amd64 (1.21.3-3) ... Setting up libgfortran5:amd64 (14.2.0-8) ... Setting up autoconf (2.72-3) ... Setting up libwebp7:amd64 (1.4.0-0.1+b1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libtiff6:amd64 (4.5.1+git230720-5) ... Setting up libuchardet0:amd64 (0.0.8-1+b2) ... Setting up libopenjp2-7:amd64 (2.5.0-2+b4) ... Setting up libx11-6:amd64 (2:1.8.10-2) ... Setting up netbase (6.4) ... Setting up sgml-base (1.31) ... Setting up libkrb5-3:amd64 (1.21.3-3) ... Setting up libwebpmux3:amd64 (1.4.0-0.1+b1) ... Setting up readline-common (8.2-5) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up liblapack3:amd64 (3.12.0-3+b1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up gettext (0.22.5-2) ... Setting up libxrender1:amd64 (1:0.9.10-1.1+b2) ... Setting up libtool (2.4.7-8) ... Setting up fontconfig-config (2.15.0-1.1+b1) ... Setting up libwebpdemux2:amd64 (1.4.0-0.1+b1) ... Setting up libxext6:amd64 (2:1.3.4-1+b2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libfreetype6:amd64 (2.13.3+dfsg-1) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-3) ... Setting up libreadline8t64:amd64 (8.2-5) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up xml-core (0.19) ... Setting up libharfbuzz0b:amd64 (10.0.1-1) ... Setting up libfontconfig1:amd64 (2.15.0-1.1+b1) ... Setting up libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up xfonts-utils (1:7.7+7) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libcairo2:amd64 (1.18.2-2) ... Setting up libraqm0:amd64 (0.10.1-1+b2) ... Setting up libnsl2:amd64 (1.3.0-3+b3) ... Setting up libpython3.12-stdlib:amd64 (3.12.7-3) ... Setting up python3.12 (3.12.7-3) ... Setting up debhelper (13.20) ... Setting up fonts-urw-base35 (20200910-8) ... Setting up libpython3-stdlib:amd64 (3.12.6-1) ... Setting up python3 (3.12.6-1) ... Setting up python3-zipp (3.21.0-1) ... Setting up python3-freetype (2.5.1-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up python3-pil:amd64 (10.4.0-1+b1) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up python3-more-itertools (10.5.0-1) ... Setting up python3-cairo (1.26.1-2+b1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up python3-typeguard (4.4.1-1) ... Setting up python3-inflect (7.3.1-2) ... Setting up python3-rlpycairo (0.3.0-3) ... Setting up python3-pkg-resources (74.1.2-2) ... Setting up python3-setuptools (74.1.2-2) ... Setting up python3-chardet (5.2.0+dfsg-1) ... Setting up python3-numpy (1:1.26.4+ds-12) ... Setting up python3-reportlab (4.2.5-1) ... Setting up dh-python (6.20241024) ... Processing triggers for libc-bin (2.40-3) ... Processing triggers for sgml-base (1.31) ... Setting up w3c-sgml-lib (1.3-3) ... Setting up python3-biopython (1.84+dfsg-4+b1) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/3606145/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for trixie I: user script /srv/workspace/pbuilder/3606145/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/python-cgecore-1.5.6+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../python-cgecore_1.5.6+ds-1_source.changes dpkg-buildpackage: info: source package python-cgecore dpkg-buildpackage: info: source version 1.5.6+ds-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Steffen Moeller dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --with python3 --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/python-cgecore-1.5.6+ds' dh_auto_clean I: pybuild base:311: python3.12 setup.py clean running clean removing '/build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.12' does not exist -- can't clean it rm -rf cgecore.egg-info make[1]: Leaving directory '/build/reproducible-path/python-cgecore-1.5.6+ds' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.12 setup.py config running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py build running build running build_py creating /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore copying cgecore/utility.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore copying cgecore/cgefinder.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore copying cgecore/argumentparsing.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore copying cgecore/__init__.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore copying cgecore/alignment.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore copying cgecore/cmdline.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore creating /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/blaster copying cgecore/blaster/run_blaster.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/blaster copying cgecore/blaster/blaster.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/blaster copying cgecore/blaster/__init__.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/blaster creating /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/organisminfo copying cgecore/organisminfo/species.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/organisminfo copying cgecore/organisminfo/__init__.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/organisminfo copying cgecore/organisminfo/gramstain.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/organisminfo copying cgecore/organisminfo/gram_neg.txt -> /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/organisminfo copying cgecore/organisminfo/gram_pos.txt -> /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/organisminfo dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: cd /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build; python3.12 -m unittest discover -v /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/utility.py:137: SyntaxWarning: invalid escape sequence '\{' """ /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/utility.py:491: SyntaxWarning: invalid escape sequence '\w' src = re.sub('[^\w/\-\.\*]', '', src) /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/utility.py:492: SyntaxWarning: invalid escape sequence '\w' dst = re.sub('[^\w/\-\.\*]', '', dst) /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/utility.py:493: SyntaxWarning: invalid escape sequence '\W' if len(re.sub('[\W]', '', src)) < 5 or len(re.sub('[\W]', '', dst)) < 5: /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/utility.py:493: SyntaxWarning: invalid escape sequence '\W' if len(re.sub('[\W]', '', src)) < 5 or len(re.sub('[\W]', '', dst)) < 5: /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/utility.py:520: SyntaxWarning: invalid escape sequence '\w' invalid_chars = re.findall('[^\w/\-\.\*]', os.path.basename(file_)) /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/utility.py:539: SyntaxWarning: invalid escape sequence '\w' src = re.sub('[^\w/\-\.\*]', '', src) /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/utility.py:540: SyntaxWarning: invalid escape sequence '\w' dst = re.sub('[^\w/\-\.\*]', '', dst) /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/utility.py:541: SyntaxWarning: invalid escape sequence '\W' if len(re.sub('[\W]', '', src)) < 5 or len(re.sub('[\W]', '', dst)) < 5: /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/utility.py:541: SyntaxWarning: invalid escape sequence '\W' if len(re.sub('[\W]', '', src)) < 5 or len(re.sub('[\W]', '', dst)) < 5: ---------------------------------------------------------------------- Ran 0 tests in 0.000s NO TESTS RAN create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/python3-cgecore/ -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running install_lib creating /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr creating /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib creating /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12 creating /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages creating /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/utility.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore creating /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/__pycache__ copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/__pycache__/cmdline.cpython-312.pyc -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/__pycache__ copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/__pycache__ copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/__pycache__/utility.cpython-312.pyc -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/__pycache__ copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/__pycache__/argumentparsing.cpython-312.pyc -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/__pycache__ copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/cgefinder.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/argumentparsing.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore creating /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/organisminfo creating /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/organisminfo/__pycache__ copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/organisminfo/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/organisminfo/__pycache__ copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/organisminfo/species.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/organisminfo copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/organisminfo/gram_neg.txt -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/organisminfo copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/organisminfo/gram_pos.txt -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/organisminfo copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/organisminfo/__init__.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/organisminfo copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/organisminfo/gramstain.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/organisminfo creating /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/blaster copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/blaster/run_blaster.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/blaster copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/blaster/blaster.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/blaster creating /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/blaster/__pycache__ copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/blaster/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/blaster/__pycache__ copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/blaster/__pycache__/blaster.cpython-312.pyc -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/blaster/__pycache__ copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/blaster/__init__.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/blaster copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/__init__.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/alignment.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/cmdline.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore byte-compiling /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/utility.py to utility.cpython-312.pyc /usr/lib/python3.12/dist-packages/cgecore/utility.py:137: SyntaxWarning: invalid escape sequence '\{' /usr/lib/python3.12/dist-packages/cgecore/utility.py:491: SyntaxWarning: invalid escape sequence '\w' /usr/lib/python3.12/dist-packages/cgecore/utility.py:492: SyntaxWarning: invalid escape sequence '\w' /usr/lib/python3.12/dist-packages/cgecore/utility.py:493: SyntaxWarning: invalid escape sequence '\W' /usr/lib/python3.12/dist-packages/cgecore/utility.py:493: SyntaxWarning: invalid escape sequence '\W' /usr/lib/python3.12/dist-packages/cgecore/utility.py:520: SyntaxWarning: invalid escape sequence '\w' /usr/lib/python3.12/dist-packages/cgecore/utility.py:539: SyntaxWarning: invalid escape sequence '\w' /usr/lib/python3.12/dist-packages/cgecore/utility.py:540: SyntaxWarning: invalid escape sequence '\w' /usr/lib/python3.12/dist-packages/cgecore/utility.py:541: SyntaxWarning: invalid escape sequence '\W' /usr/lib/python3.12/dist-packages/cgecore/utility.py:541: SyntaxWarning: invalid escape sequence '\W' byte-compiling /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/cgefinder.py to cgefinder.cpython-312.pyc /usr/lib/python3.12/dist-packages/cgecore/cgefinder.py:242: SyntaxWarning: invalid escape sequence '\w' /usr/lib/python3.12/dist-packages/cgecore/cgefinder.py:243: SyntaxWarning: invalid escape sequence '\w' byte-compiling /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/argumentparsing.py to argumentparsing.cpython-312.pyc byte-compiling /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/organisminfo/species.py to species.cpython-312.pyc byte-compiling /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/organisminfo/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/organisminfo/gramstain.py to gramstain.cpython-312.pyc byte-compiling /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/blaster/run_blaster.py to run_blaster.cpython-312.pyc byte-compiling /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/blaster/blaster.py to blaster.cpython-312.pyc byte-compiling /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/blaster/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/alignment.py to alignment.cpython-312.pyc byte-compiling /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/cmdline.py to cmdline.cpython-312.pyc running install_egg_info running egg_info creating cgecore.egg-info writing cgecore.egg-info/PKG-INFO writing dependency_links to cgecore.egg-info/dependency_links.txt writing top-level names to cgecore.egg-info/top_level.txt writing manifest file 'cgecore.egg-info/SOURCES.txt' reading manifest file 'cgecore.egg-info/SOURCES.txt' writing manifest file 'cgecore.egg-info/SOURCES.txt' Copying cgecore.egg-info to /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore-1.5.6.egg-info Skipping SOURCES.txt running install_scripts dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-cgecore' in '../python3-cgecore_1.5.6+ds-1_all.deb'. dpkg-genbuildinfo --build=binary -O../python-cgecore_1.5.6+ds-1_amd64.buildinfo dpkg-genchanges --build=binary -O../python-cgecore_1.5.6+ds-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/3606145/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/3606145/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3606145 and its subdirectories I: Current time: Sun Dec 28 12:58:58 +14 2025 I: pbuilder-time-stamp: 1766876338 + false + set +x Sat Dec 27 22:58:58 UTC 2025 I: Signing ./b2/python-cgecore_1.5.6+ds-1_amd64.buildinfo as python-cgecore_1.5.6+ds-1_amd64.buildinfo.asc Sat Dec 27 22:58:59 UTC 2025 I: Signed ./b2/python-cgecore_1.5.6+ds-1_amd64.buildinfo as ./b2/python-cgecore_1.5.6+ds-1_amd64.buildinfo.asc Sat Dec 27 22:58:59 UTC 2025 - build #2 for python-cgecore/trixie/amd64 on ionos15-amd64 done. Starting cleanup. All cleanup done. Sat Dec 27 22:58:59 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-u7dEOBnG, removing. /srv/reproducible-results/rbuild-debian/r-b-build.4OYPMk8L: total 88 drwxr-xr-x 2 jenkins jenkins 4096 Nov 24 16:30 b1 drwxr-xr-x 2 jenkins jenkins 4096 Nov 24 16:35 b2 -rw-r--r-- 1 jenkins jenkins 2142 Nov 27 2020 python-cgecore_1.5.6+ds-1.dsc -rw------- 1 jenkins jenkins 69842 Nov 24 16:30 rbuildlog.5OLC5wB /srv/reproducible-results/rbuild-debian/r-b-build.4OYPMk8L/b1: total 164 -rw-r--r-- 1 jenkins jenkins 66248 Nov 24 16:30 build.log -rw-r--r-- 1 jenkins jenkins 1844 Nov 24 16:30 python-cgecore_1.5.6+ds-1.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2142 Nov 24 16:30 python-cgecore_1.5.6+ds-1.dsc -rw-r--r-- 1 jenkins jenkins 7416 Nov 24 16:30 python-cgecore_1.5.6+ds-1_amd64.buildinfo -rw-r--r-- 1 jenkins jenkins 8298 Nov 24 16:30 python-cgecore_1.5.6+ds-1_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1173 Nov 24 16:30 python-cgecore_1.5.6+ds-1_amd64.changes -rw-r--r-- 1 jenkins jenkins 1624 Nov 24 16:30 python-cgecore_1.5.6+ds-1_source.changes -rw-r--r-- 1 jenkins jenkins 26276 Nov 24 16:30 python-cgecore_1.5.6+ds.orig.tar.xz -rw-r--r-- 1 jenkins jenkins 28628 Nov 24 16:30 python3-cgecore_1.5.6+ds-1_all.deb /srv/reproducible-results/rbuild-debian/r-b-build.4OYPMk8L/b2: total 160 -rw-r--r-- 1 jenkins jenkins 68189 Nov 24 16:35 build.log -rw-r--r-- 1 jenkins jenkins 1844 Nov 24 16:35 python-cgecore_1.5.6+ds-1.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2142 Nov 24 16:35 python-cgecore_1.5.6+ds-1.dsc -rw-r--r-- 1 jenkins jenkins 7425 Nov 24 16:35 python-cgecore_1.5.6+ds-1_amd64.buildinfo -rw-r--r-- 1 jenkins jenkins 8307 Nov 24 16:35 python-cgecore_1.5.6+ds-1_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1173 Nov 24 16:35 python-cgecore_1.5.6+ds-1_amd64.changes -rw-r--r-- 1 jenkins jenkins 1624 Nov 24 16:35 python-cgecore_1.5.6+ds-1_source.changes -rw-r--r-- 1 jenkins jenkins 26276 Nov 24 16:35 python-cgecore_1.5.6+ds.orig.tar.xz -rw-r--r-- 1 jenkins jenkins 28628 Nov 24 16:35 python3-cgecore_1.5.6+ds-1_all.deb Sun Nov 24 16:35:59 UTC 2024 I: Deleting $TMPDIR on ionos15-amd64.debian.net. Sun Nov 24 16:36:00 UTC 2024 I: python-cgecore_1.5.6+ds-1_amd64.changes: Format: 1.8 Date: Fri, 27 Nov 2020 22:43:08 +0100 Source: python-cgecore Binary: python3-cgecore Architecture: all Version: 1.5.6+ds-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Steffen Moeller Description: python3-cgecore - Python3 module for the Center for Genomic Epidemiology Changes: python-cgecore (1.5.6+ds-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.5.1 (routine-update) Checksums-Sha1: e3cd1ae6d41c0fde3d7187363a04a83f8e6c28af 7416 python-cgecore_1.5.6+ds-1_amd64.buildinfo c22fb6f6c53ba9b8f6c7020b5fe2d47bf9a148ac 28628 python3-cgecore_1.5.6+ds-1_all.deb Checksums-Sha256: ee8c9def9dbcfecd411466dbcb82f2e18c7924194a7cca6471bbecc0da953a34 7416 python-cgecore_1.5.6+ds-1_amd64.buildinfo 7ad444debf5832d92e784ca0086678b95a07475c429df2bb5288b2841aa5d939 28628 python3-cgecore_1.5.6+ds-1_all.deb Files: 21f73161ce1ba44b93180ca893e40562 7416 python optional python-cgecore_1.5.6+ds-1_amd64.buildinfo aa81f6f5ddabd6a86095ae5b41fa2036 28628 python optional python3-cgecore_1.5.6+ds-1_all.deb removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/amd64/python-cgecore_1.5.6+ds-1.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/amd64/python-cgecore_1.5.6+ds-1.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/trixie/amd64/python-cgecore_1.5.6+ds-1.build1.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/trixie/amd64/python-cgecore_1.5.6+ds-1.build2.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/buildinfo/trixie/amd64/python-cgecore_1.5.6+ds-1_amd64.buildinfo' removed '/var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/amd64/python-cgecore_1.5.6+ds-1.diff.gz' Diff of the two buildlogs: -- --- b1/build.log 2024-11-24 16:30:01.586834383 +0000 +++ b2/build.log 2024-11-24 16:35:59.870619792 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sun Nov 24 04:27:49 -12 2024 -I: pbuilder-time-stamp: 1732465669 +I: Current time: Sun Dec 28 12:53:05 +14 2025 +I: pbuilder-time-stamp: 1766875985 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -26,52 +26,84 @@ dpkg-source: info: unpacking python-cgecore_1.5.6+ds-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/3961677/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/3606145/tmp/hooks/D01_modify_environment starting +debug: Running on ionos15-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Dec 27 22:53 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/3606145/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/3606145/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.32(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='a5b97edb980f4704957d9f66ee235709' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='3961677' - PS1='# ' - PS2='> ' + INVOCATION_ID=87180ed1595f43de8e340e0b36ec2da9 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=3606145 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.4OYPMk8L/pbuilderrc_kOA6 --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.4OYPMk8L/b1 --logfile b1/build.log python-cgecore_1.5.6+ds-1.dsc' - SUDO_GID='111' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://46.16.76.132:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.4OYPMk8L/pbuilderrc_cKqX --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.4OYPMk8L/b2 --logfile b2/build.log python-cgecore_1.5.6+ds-1.dsc' + SUDO_GID=111 + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://213.165.73.152:3128 I: uname -a - Linux ionos11-amd64 6.1.0-27-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.115-1 (2024-11-01) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.11.5+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.11.5-1~bpo12+1 (2024-11-11) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/3961677/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/3606145/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -231,7 +263,7 @@ Get: 114 http://deb.debian.org/debian trixie/main amd64 xml-core all 0.19 [20.1 kB] Get: 115 http://deb.debian.org/debian trixie/main amd64 w3c-sgml-lib all 1.3-3 [273 kB] Get: 116 http://deb.debian.org/debian trixie/main amd64 python3-biopython amd64 1.84+dfsg-4+b1 [1651 kB] -Fetched 61.5 MB in 1s (72.4 MB/s) +Fetched 61.5 MB in 2s (29.6 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.12-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19969 files and directories currently installed.) @@ -629,8 +661,8 @@ Setting up tzdata (2024b-3) ... Current default time zone: 'Etc/UTC' -Local time is now: Sun Nov 24 16:28:32 UTC 2024. -Universal Time is now: Sun Nov 24 16:28:32 UTC 2024. +Local time is now: Sat Dec 27 22:54:59 UTC 2025. +Universal Time is now: Sat Dec 27 22:54:59 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libfontenc1:amd64 (1:1.1.8-1+b1) ... @@ -730,7 +762,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/python-cgecore-1.5.6+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-cgecore_1.5.6+ds-1_source.changes +I: user script /srv/workspace/pbuilder/3606145/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/3606145/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/python-cgecore-1.5.6+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../python-cgecore_1.5.6+ds-1_source.changes dpkg-buildpackage: info: source package python-cgecore dpkg-buildpackage: info: source version 1.5.6+ds-1 dpkg-buildpackage: info: source distribution unstable @@ -763,20 +799,20 @@ running build running build_py creating /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore +copying cgecore/utility.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore +copying cgecore/cgefinder.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore copying cgecore/argumentparsing.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore copying cgecore/__init__.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore -copying cgecore/utility.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore -copying cgecore/cmdline.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore copying cgecore/alignment.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore -copying cgecore/cgefinder.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore +copying cgecore/cmdline.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore creating /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/blaster -copying cgecore/blaster/__init__.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/blaster -copying cgecore/blaster/blaster.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/blaster copying cgecore/blaster/run_blaster.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/blaster +copying cgecore/blaster/blaster.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/blaster +copying cgecore/blaster/__init__.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/blaster creating /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/organisminfo +copying cgecore/organisminfo/species.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/organisminfo copying cgecore/organisminfo/__init__.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/organisminfo copying cgecore/organisminfo/gramstain.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/organisminfo -copying cgecore/organisminfo/species.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/organisminfo copying cgecore/organisminfo/gram_neg.txt -> /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/organisminfo copying cgecore/organisminfo/gram_pos.txt -> /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/organisminfo dh_auto_test -O--buildsystem=pybuild @@ -833,34 +869,32 @@ creating /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12 creating /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages creating /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore -copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/argumentparsing.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore -copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/__init__.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/utility.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore creating /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/__pycache__ copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/__pycache__/cmdline.cpython-312.pyc -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/__pycache__ -copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/__pycache__/utility.cpython-312.pyc -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/__pycache__ copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/__pycache__ +copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/__pycache__/utility.cpython-312.pyc -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/__pycache__ copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/__pycache__/argumentparsing.cpython-312.pyc -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/__pycache__ -creating /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/blaster -copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/blaster/__init__.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/blaster -copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/blaster/blaster.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/blaster -creating /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/blaster/__pycache__ -copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/blaster/__pycache__/blaster.cpython-312.pyc -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/blaster/__pycache__ -copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/blaster/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/blaster/__pycache__ -copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/blaster/run_blaster.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/blaster -copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/cmdline.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore -copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/alignment.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore +copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/cgefinder.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore +copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/argumentparsing.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore creating /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/organisminfo -copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/organisminfo/__init__.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/organisminfo -copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/organisminfo/gramstain.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/organisminfo -copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/organisminfo/gram_neg.txt -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/organisminfo creating /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/organisminfo/__pycache__ copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/organisminfo/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/organisminfo/__pycache__ copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/organisminfo/species.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/organisminfo +copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/organisminfo/gram_neg.txt -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/organisminfo copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/organisminfo/gram_pos.txt -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/organisminfo -copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/cgefinder.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore -byte-compiling /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/argumentparsing.py to argumentparsing.cpython-312.pyc -byte-compiling /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/__init__.py to __init__.cpython-312.pyc +copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/organisminfo/__init__.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/organisminfo +copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/organisminfo/gramstain.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/organisminfo +creating /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/blaster +copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/blaster/run_blaster.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/blaster +copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/blaster/blaster.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/blaster +creating /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/blaster/__pycache__ +copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/blaster/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/blaster/__pycache__ +copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/blaster/__pycache__/blaster.cpython-312.pyc -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/blaster/__pycache__ +copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/blaster/__init__.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/blaster +copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/__init__.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore +copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/alignment.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore +copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/cmdline.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore byte-compiling /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/utility.py to utility.cpython-312.pyc /usr/lib/python3.12/dist-packages/cgecore/utility.py:137: SyntaxWarning: invalid escape sequence '\{' /usr/lib/python3.12/dist-packages/cgecore/utility.py:491: SyntaxWarning: invalid escape sequence '\w' @@ -872,17 +906,19 @@ /usr/lib/python3.12/dist-packages/cgecore/utility.py:540: SyntaxWarning: invalid escape sequence '\w' /usr/lib/python3.12/dist-packages/cgecore/utility.py:541: SyntaxWarning: invalid escape sequence '\W' /usr/lib/python3.12/dist-packages/cgecore/utility.py:541: SyntaxWarning: invalid escape sequence '\W' -byte-compiling /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/blaster/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/blaster/blaster.py to blaster.cpython-312.pyc -byte-compiling /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/blaster/run_blaster.py to run_blaster.cpython-312.pyc -byte-compiling /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/cmdline.py to cmdline.cpython-312.pyc -byte-compiling /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/alignment.py to alignment.cpython-312.pyc -byte-compiling /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/organisminfo/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/organisminfo/gramstain.py to gramstain.cpython-312.pyc -byte-compiling /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/organisminfo/species.py to species.cpython-312.pyc byte-compiling /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/cgefinder.py to cgefinder.cpython-312.pyc /usr/lib/python3.12/dist-packages/cgecore/cgefinder.py:242: SyntaxWarning: invalid escape sequence '\w' /usr/lib/python3.12/dist-packages/cgecore/cgefinder.py:243: SyntaxWarning: invalid escape sequence '\w' +byte-compiling /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/argumentparsing.py to argumentparsing.cpython-312.pyc +byte-compiling /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/organisminfo/species.py to species.cpython-312.pyc +byte-compiling /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/organisminfo/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/organisminfo/gramstain.py to gramstain.cpython-312.pyc +byte-compiling /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/blaster/run_blaster.py to run_blaster.cpython-312.pyc +byte-compiling /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/blaster/blaster.py to blaster.cpython-312.pyc +byte-compiling /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/blaster/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/alignment.py to alignment.cpython-312.pyc +byte-compiling /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/cmdline.py to cmdline.cpython-312.pyc running install_egg_info running egg_info creating cgecore.egg-info @@ -917,12 +953,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/3606145/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/3606145/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/3961677 and its subdirectories -I: Current time: Sun Nov 24 04:30:00 -12 2024 -I: pbuilder-time-stamp: 1732465800 +I: removing directory /srv/workspace/pbuilder/3606145 and its subdirectories +I: Current time: Sun Dec 28 12:58:58 +14 2025 +I: pbuilder-time-stamp: 1766876338 Compressing the 2nd log... /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/amd64/python-cgecore_1.5.6+ds-1.diff: 84.9% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/amd64/python-cgecore_1.5.6+ds-1.diff.gz b2/build.log: 83.0% -- replaced with stdout Compressing the 1st log... b1/build.log: 83.5% -- replaced with stdout Sun Nov 24 16:36:01 UTC 2024 I: diffoscope 283 will be used to compare the two builds: ++ date -u +%s + DIFFOSCOPE_STAMP=/var/log/reproducible-builds/diffoscope_stamp_python-cgecore_trixie_amd64_1732466161 + touch /var/log/reproducible-builds/diffoscope_stamp_python-cgecore_trixie_amd64_1732466161 + RESULT=0 + systemd-run '--description=diffoscope on python-cgecore/1.5.6+ds-1 in trixie/amd64' --slice=rb-build-diffoscope.slice -u rb-diffoscope-amd64_7-40078 '--property=SuccessExitStatus=1 124' --user --send-sighup --pipe --wait -E TMPDIR timeout 155m nice schroot --directory /srv/reproducible-results/rbuild-debian/r-b-build.4OYPMk8L --run-session -c jenkins-reproducible-trixie-diffoscope-4123edeb-d2a6-4a2c-949d-e87fe1c13e93 -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian/r-b-build.4OYPMk8L/dbd-tmp-lE7lNw6 ; timeout 150m diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.4OYPMk8L/python-cgecore_1.5.6+ds-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.4OYPMk8L/python-cgecore_1.5.6+ds-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.4OYPMk8L/python-cgecore_1.5.6+ds-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.4OYPMk8L/b1/python-cgecore_1.5.6+ds-1_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.4OYPMk8L/b2/python-cgecore_1.5.6+ds-1_amd64.changes' + false + set +x Running as unit: rb-diffoscope-amd64_7-40078.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.4OYPMk8L/python-cgecore_1.5.6+ds-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.4OYPMk8L/python-cgecore_1.5.6+ds-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.4OYPMk8L/python-cgecore_1.5.6+ds-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.4OYPMk8L/b1/python-cgecore_1.5.6+ds-1_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.4OYPMk8L/b2/python-cgecore_1.5.6+ds-1_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.407s) 0.407s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.016s) 0.016s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 769ms CPU time consumed: 770ms _ _ _ __ _ _| |_| |__ ___ _ __ ___ __ _ ___ ___ ___ _ __ ___ | '_ \| | | | __| '_ \ / _ \| '_ \ _____ / __/ _` |/ _ \/ __/ _ \| '__/ _ \ | |_) | |_| | |_| | | | (_) | | | |_____| (_| (_| | __/ (_| (_) | | | __/ | .__/ \__, |\__|_| |_|\___/|_| |_| \___\__, |\___|\___\___/|_| \___| |_| |___/ |___/ Sun Nov 24 16:36:03 UTC 2024 I: diffoscope 283 found no differences in the changes files, and a .buildinfo file also exists. Sun Nov 24 16:36:03 UTC 2024 I: python-cgecore from trixie built successfully and reproducibly on amd64. INSERT 0 1 INSERT 0 1 DELETE 1 [2024-11-24 16:36:04] INFO: Starting at 2024-11-24 16:36:04.604593 [2024-11-24 16:36:04] INFO: Generating the pages of 1 package(s) [2024-11-24 16:36:04] CRITICAL: https://tests.reproducible-builds.org/debian/trixie/amd64/python-cgecore didn't produce a buildlog, even though it has been built. [2024-11-24 16:36:04] INFO: Finished at 2024-11-24 16:36:04.989849, took: 0:00:00.385270 Sun Nov 24 16:36:05 UTC 2024 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/trixie/amd64/python-cgecore.html Sun Nov 24 16:36:05 UTC 2024 I: Submitting .buildinfo files to external archives: Sun Nov 24 16:36:05 UTC 2024 I: Submitting 12K b1/python-cgecore_1.5.6+ds-1_amd64.buildinfo.asc https://buildinfo.debian.net/e3cd1ae6d41c0fde3d7187363a04a83f8e6c28af/python-cgecore_1.5.6+ds-1_all Sun Nov 24 16:36:05 UTC 2024 I: Submitting 12K b2/python-cgecore_1.5.6+ds-1_amd64.buildinfo.asc https://buildinfo.debian.net/a0ee1f5be2ac7cf7c177a79eaae12a844ef52ab9/python-cgecore_1.5.6+ds-1_all Sun Nov 24 16:36:06 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sun Nov 24 16:36:06 UTC 2024 I: Done submitting .buildinfo files. Sun Nov 24 16:36:06 UTC 2024 I: Removing signed python-cgecore_1.5.6+ds-1_amd64.buildinfo.asc files: removed './b1/python-cgecore_1.5.6+ds-1_amd64.buildinfo.asc' removed './b2/python-cgecore_1.5.6+ds-1_amd64.buildinfo.asc' 1732466166 amd64 trixie python-cgecore Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/amd64/python-cgecore_1.5.6+ds-1.rbuild.log: 80.9% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/amd64/python-cgecore_1.5.6+ds-1.rbuild.log.gz [2024-11-24 16:36:06] INFO: Starting at 2024-11-24 16:36:06.896628 [2024-11-24 16:36:06] INFO: Generating the pages of 1 package(s) [2024-11-24 16:36:07] INFO: Finished at 2024-11-24 16:36:07.254702, took: 0:00:00.358081 All cleanup done. Sun Nov 24 16:36:07 UTC 2024 - total duration: 0h 8m 22s. Sun Nov 24 16:36:07 UTC 2024 - reproducible_build.sh stopped running as /tmp/jenkins-script-MLxgUK4r, removing. Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 8min 25.600s CPU time consumed: 7.561s