Running as unit: rb-build-amd64_7-72323.service; invocation ID: ed5e6268ac8448b6a067ffb142b49b34 ==================================================================================== Sun Sep 14 22:04:24 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_amd64_7) on jenkins, called using "ionos11-amd64 ionos15-amd64" as arguments. Sun Sep 14 22:04:24 UTC 2025 - actually running "reproducible_build.sh" (md5sum cc591790ab2c8e13f5e554202b95c89c) as "/tmp/jenkins-script-OoIX9446" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Sun Sep 14 22:04:24 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos11-amd64.debian.net is marked as down. Sun Sep 14 22:04:24 UTC 2025 - checking via ssh if ionos11-amd64.debian.net is up. removed '/tmp/read-only-fs-test-csEguK' Sun Sep 14 22:04:24 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos15-amd64.debian.net is marked as down. Sun Sep 14 22:04:24 UTC 2025 - checking via ssh if ionos15-amd64.debian.net is up. removed '/tmp/read-only-fs-test-rSfRwL' ok, let's check if changeo is building anywhere yet… ok, changeo is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of changeo in forky on amd64 on jenkins now. 1st build will be done on ionos11-amd64.debian.net. 2nd build will be done on ionos15-amd64.debian.net. ============================================================================= Sun Sep 14 22:04:37 UTC 2025 I: starting to build changeo/forky/amd64 on jenkins on '2025-09-14 22:04' Sun Sep 14 22:04:37 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_7/72323/console.log 1757887477 amd64 forky changeo Sun Sep 14 22:04:37 UTC 2025 I: Downloading source for forky/changeo=1.3.0-3 --2025-09-14 22:04:37-- http://deb.debian.org/debian/pool/main/c/changeo/changeo_1.3.0-3.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2324 (2.3K) [text/prs.lines.tag] Saving to: ‘changeo_1.3.0-3.dsc’ 0K .. 100% 248M=0s 2025-09-14 22:04:37 (248 MB/s) - ‘changeo_1.3.0-3.dsc’ saved [2324/2324] --2025-09-14 22:04:37-- http://deb.debian.org/debian/pool/main/c/changeo/changeo_1.3.0-3.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2324 (2.3K) [text/prs.lines.tag] Saving to: ‘changeo_1.3.0-3.dsc’ 0K .. 100% 248M=0s 2025-09-14 22:04:37 (248 MB/s) - ‘changeo_1.3.0-3.dsc’ saved [2324/2324] Sun Sep 14 22:04:37 UTC 2025 I: changeo_1.3.0-3.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: changeo Binary: changeo Architecture: all Version: 1.3.0-3 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller Homepage: https://changeo.readthedocs.io Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/changeo Vcs-Git: https://salsa.debian.org/med-team/changeo.git Testsuite: autopkgtest, autopkgtest-pkg-python Build-Depends: debhelper-compat (= 13), dh-sequence-python3, python3-all, python3-setuptools Package-List: changeo deb science optional arch=all Checksums-Sha1: ccb0dda221c2d753b0b79a5bd57b53ee86f7c12e 514141 changeo_1.3.0.orig-debian-tests-data.tar.gz 0515fd1ce642820f26adf4c400c911f1222e5a90 151532 changeo_1.3.0.orig.tar.gz 247c7c8757c7ba1508649a4df72fe16f1b450e2f 15296 changeo_1.3.0-3.debian.tar.xz Checksums-Sha256: 71083354ae0f3bc015f95c1c404fdba4c29f7a934d57b6e206f7c23d01888074 514141 changeo_1.3.0.orig-debian-tests-data.tar.gz febec2503086b4d76a177d60f9bcb742645d24417750e976409790e9b68288ad 151532 changeo_1.3.0.orig.tar.gz e9f92cb6612cdee2ae85eacbe8912cc4a6b5fa650da348309490ab750a001e84 15296 changeo_1.3.0-3.debian.tar.xz Files: d43661a4b5ba2823f87f98cef12fbe5c 514141 changeo_1.3.0.orig-debian-tests-data.tar.gz 8d2d964d79803f3dcbbc506a9d0ccca6 151532 changeo_1.3.0.orig.tar.gz bc94b4e812961d8109a69dcb05844794 15296 changeo_1.3.0-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmdR8hsRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtGZqw/+JXjoU2w0eksPuevljRJz56SNXhYnCyjE 5nd7ZCI09slPbLI37nG5PZo3isCjeWUMfXiLyN10HF5ueg0M3CHZwxlYdPXK6buH 8PD982/uh6UJXfXBUgQCzWsO+Dl7xkyWGCQbegYl1lynrN52kl5FliaUQjd+8s+J wkGELvrDZ0qm3nW2R0579Ql1fXGpiezIRhOIS1FoG6CyR0TQuRRLldDWP8zWhv0N kut9qQ89yUeTQXNTV4SN5Du3cFikcNDVLYMz+jGztL68Vcif6L/Ke6JqAVUOLJqr zFYRB1Zi8iS4DXSSjAlF2cETh1ql42IE5DrQmcHlY32Qldktr8Rzw7RCsbe/ytJ2 MPJ8FAp5TZ1SrObRFXTF8F5vE9gB7/TYzFNbg/N6T4Z91tHwjclu8/IDV4zikagt X/L1FzJHgInl+uSFh6yWFPuj9didn7K/3oj06OY89NtK8CtCxEi8LdFp+bjUhZN/ 2rG6pco9A0AeTy6gnJVT5ris40HcbPD98jDctUPWHyQRmVJTnBewAKqwjoZyMezK T8LodVjkX51nNHUCR+S44XUlL1S9h+AGQfzZU818MeQ3zLmTyXkdl8YEmtr4hGky ZUyf9jA8pbZKg/OUA2JAkDsX4wsTYeztjiUgICnJ1N2/opSYMcBRgJpnSIHd3co/ tnpq2GewO8Q= =+dKO -----END PGP SIGNATURE----- Sun Sep 14 22:04:37 UTC 2025 I: Checking whether the package is not for us Sun Sep 14 22:04:37 UTC 2025 I: Starting 1st build on remote node ionos11-amd64.debian.net. Sun Sep 14 22:04:37 UTC 2025 I: Preparing to do remote build '1' on ionos11-amd64.debian.net. Sun Sep 14 22:04:37 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos11-amd64.debian.net is marked as down. Sun Sep 14 22:04:37 UTC 2025 - checking via ssh if ionos11-amd64.debian.net is up. removed '/tmp/read-only-fs-test-pRhZhs' ==================================================================================== Sun Sep 14 22:04:38 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos11-amd64, called using "1 changeo forky /srv/reproducible-results/rbuild-debian/r-b-build.bIMVg8g0 1.3.0-3" as arguments. Sun Sep 14 22:04:38 UTC 2025 - actually running "reproducible_build.sh" (md5sum cc591790ab2c8e13f5e554202b95c89c) as "/tmp/jenkins-script-A3jz2mQk" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Sun Sep 14 22:04:38 UTC 2025 I: Downloading source for forky/changeo=1.3.0-3 Reading package lists... NOTICE: 'changeo' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/changeo.git Please use: git clone https://salsa.debian.org/med-team/changeo.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 683 kB of source archives. Get:1 http://deb.debian.org/debian forky/main changeo 1.3.0-3 (dsc) [2324 B] Get:2 http://deb.debian.org/debian forky/main changeo 1.3.0-3 (tar) [514 kB] Get:3 http://deb.debian.org/debian forky/main changeo 1.3.0-3 (tar) [152 kB] Get:4 http://deb.debian.org/debian forky/main changeo 1.3.0-3 (diff) [15.3 kB] Fetched 683 kB in 0s (8156 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'changeo' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/changeo.git Please use: git clone https://salsa.debian.org/med-team/changeo.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 683 kB of source archives. Get:1 http://deb.debian.org/debian forky/main changeo 1.3.0-3 (dsc) [2324 B] Get:2 http://deb.debian.org/debian forky/main changeo 1.3.0-3 (tar) [514 kB] Get:3 http://deb.debian.org/debian forky/main changeo 1.3.0-3 (tar) [152 kB] Get:4 http://deb.debian.org/debian forky/main changeo 1.3.0-3 (diff) [15.3 kB] Fetched 683 kB in 0s (8156 kB/s) Download complete and in download only mode ============================================================================= Building changeo in forky on amd64 on ionos11-amd64 now. Date: Sun Sep 14 22:04:38 UTC 2025 Date UTC: Sun Sep 14 22:04:38 UTC 2025 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Sun Sep 14 10:04:38 -12 2025 I: pbuilder-time-stamp: 1757887478 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [changeo_1.3.0-3.dsc] I: copying [./changeo_1.3.0.orig-debian-tests-data.tar.gz] I: copying [./changeo_1.3.0.orig.tar.gz] I: copying [./changeo_1.3.0-3.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./changeo_1.3.0-3.dsc: no acceptable signature found dpkg-source: info: extracting changeo in changeo-1.3.0 dpkg-source: info: unpacking changeo_1.3.0.orig.tar.gz dpkg-source: info: unpacking changeo_1.3.0.orig-debian-tests-data.tar.gz dpkg-source: info: unpacking changeo_1.3.0-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying rm-setuptools.patch dpkg-source: info: applying python3.12-syntax.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/971949/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' DISTRIBUTION='forky' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='6507106ece4b43e2bf0310793e75747b' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='971949' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.bIMVg8g0/pbuilderrc_TwuC --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.bIMVg8g0/b1 --logfile b1/build.log changeo_1.3.0-3.dsc' SUDO_GID='111' SUDO_HOME='/var/lib/jenkins' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos11-amd64 6.12.43+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.43-1 (2025-08-27) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/971949/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, python3-all, python3-setuptools dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19917 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libpython3-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2-16{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-all{a} python3-autocommand{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-pkg-resources{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.13{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 56 newly installed, 0 to remove and 0 not upgraded. Need to get 19.2 MB of archives. After unpacking 74.7 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian forky/main amd64 libexpat1 amd64 2.7.1-2 [108 kB] Get: 2 http://deb.debian.org/debian forky/main amd64 libpython3.13-minimal amd64 3.13.7-1 [864 kB] Get: 3 http://deb.debian.org/debian forky/main amd64 python3.13-minimal amd64 3.13.7-1 [2216 kB] Get: 4 http://deb.debian.org/debian forky/main amd64 python3-minimal amd64 3.13.5-1 [27.2 kB] Get: 5 http://deb.debian.org/debian forky/main amd64 media-types all 13.0.0 [29.3 kB] Get: 6 http://deb.debian.org/debian forky/main amd64 netbase all 6.5 [12.4 kB] Get: 7 http://deb.debian.org/debian forky/main amd64 tzdata all 2025b-5 [260 kB] Get: 8 http://deb.debian.org/debian forky/main amd64 libffi8 amd64 3.5.2-2 [25.5 kB] Get: 9 http://deb.debian.org/debian forky/main amd64 readline-common all 8.3-3 [74.8 kB] Get: 10 http://deb.debian.org/debian forky/main amd64 libreadline8t64 amd64 8.3-3 [191 kB] Get: 11 http://deb.debian.org/debian forky/main amd64 libpython3.13-stdlib amd64 3.13.7-1 [1960 kB] Get: 12 http://deb.debian.org/debian forky/main amd64 python3.13 amd64 3.13.7-1 [761 kB] Get: 13 http://deb.debian.org/debian forky/main amd64 libpython3-stdlib amd64 3.13.5-1 [10.2 kB] Get: 14 http://deb.debian.org/debian forky/main amd64 python3 amd64 3.13.5-1 [28.2 kB] Get: 15 http://deb.debian.org/debian forky/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get: 16 http://deb.debian.org/debian forky/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 17 http://deb.debian.org/debian forky/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 18 http://deb.debian.org/debian forky/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 19 http://deb.debian.org/debian forky/main amd64 gettext-base amd64 0.23.1-2+b1 [244 kB] Get: 20 http://deb.debian.org/debian forky/main amd64 libuchardet0 amd64 0.0.8-2 [68.5 kB] Get: 21 http://deb.debian.org/debian forky/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 22 http://deb.debian.org/debian forky/main amd64 bsdextrautils amd64 2.41.1-2 [95.0 kB] Get: 23 http://deb.debian.org/debian forky/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 24 http://deb.debian.org/debian forky/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 25 http://deb.debian.org/debian forky/main amd64 m4 amd64 1.4.20-1 [324 kB] Get: 26 http://deb.debian.org/debian forky/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 27 http://deb.debian.org/debian forky/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 28 http://deb.debian.org/debian forky/main amd64 automake all 1:1.17-4 [862 kB] Get: 29 http://deb.debian.org/debian forky/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 30 http://deb.debian.org/debian forky/main amd64 libdebhelper-perl all 13.26 [91.8 kB] Get: 31 http://deb.debian.org/debian forky/main amd64 libtool all 2.5.4-5 [540 kB] Get: 32 http://deb.debian.org/debian forky/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 33 http://deb.debian.org/debian forky/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 34 http://deb.debian.org/debian forky/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 35 http://deb.debian.org/debian forky/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 36 http://deb.debian.org/debian forky/main amd64 libelf1t64 amd64 0.193-3 [192 kB] Get: 37 http://deb.debian.org/debian forky/main amd64 dwz amd64 0.16-2 [108 kB] Get: 38 http://deb.debian.org/debian forky/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 39 http://deb.debian.org/debian forky/main amd64 libxml2-16 amd64 2.14.5+dfsg-0.2 [638 kB] Get: 40 http://deb.debian.org/debian forky/main amd64 gettext amd64 0.23.1-2+b1 [1680 kB] Get: 41 http://deb.debian.org/debian forky/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 42 http://deb.debian.org/debian forky/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 43 http://deb.debian.org/debian forky/main amd64 debhelper all 13.26 [939 kB] Get: 44 http://deb.debian.org/debian forky/main amd64 dh-python all 6.20250414 [116 kB] Get: 45 http://deb.debian.org/debian forky/main amd64 python3-all amd64 3.13.5-1 [1048 B] Get: 46 http://deb.debian.org/debian forky/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 47 http://deb.debian.org/debian forky/main amd64 python3-more-itertools all 10.8.0-1 [71.7 kB] Get: 48 http://deb.debian.org/debian forky/main amd64 python3-typing-extensions all 4.15.0-1 [92.4 kB] Get: 49 http://deb.debian.org/debian forky/main amd64 python3-typeguard all 4.4.4-1 [37.1 kB] Get: 50 http://deb.debian.org/debian forky/main amd64 python3-inflect all 7.5.0-1 [33.0 kB] Get: 51 http://deb.debian.org/debian forky/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 52 http://deb.debian.org/debian forky/main amd64 python3-pkg-resources all 78.1.1-0.1 [224 kB] Get: 53 http://deb.debian.org/debian forky/main amd64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 54 http://deb.debian.org/debian forky/main amd64 python3-zipp all 3.23.0-1 [11.0 kB] Get: 55 http://deb.debian.org/debian forky/main amd64 python3-setuptools all 78.1.1-0.1 [738 kB] Get: 56 http://deb.debian.org/debian forky/main amd64 python3-jaraco.context all 6.0.1-1 [8276 B] Fetched 19.2 MB in 0s (111 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19917 files and directories currently installed.) Preparing to unpack .../libexpat1_2.7.1-2_amd64.deb ... Unpacking libexpat1:amd64 (2.7.1-2) ... Selecting previously unselected package libpython3.13-minimal:amd64. Preparing to unpack .../libpython3.13-minimal_3.13.7-1_amd64.deb ... Unpacking libpython3.13-minimal:amd64 (3.13.7-1) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../python3.13-minimal_3.13.7-1_amd64.deb ... Unpacking python3.13-minimal (3.13.7-1) ... Setting up libpython3.13-minimal:amd64 (3.13.7-1) ... Setting up libexpat1:amd64 (2.7.1-2) ... Setting up python3.13-minimal (3.13.7-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20251 files and directories currently installed.) 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Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.3-3) ... Selecting previously unselected package libpython3.13-stdlib:amd64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.7-1_amd64.deb ... Unpacking libpython3.13-stdlib:amd64 (3.13.7-1) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.7-1_amd64.deb ... Unpacking python3.13 (3.13.7-1) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../9-libpython3-stdlib_3.13.5-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.13.5-1) ... Setting up python3-minimal (3.13.5-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21266 files and directories currently installed.) Preparing to unpack .../00-python3_3.13.5-1_amd64.deb ... Unpacking python3 (3.13.5-1) ... Selecting previously unselected package sensible-utils. 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Setting up libarchive-zip-perl (1.68-1) ... Setting up libxml2-16:amd64 (2.14.5+dfsg-0.2) ... Setting up libdebhelper-perl (13.26) ... Setting up libmagic1t64:amd64 (1:5.46-5) ... Setting up gettext-base (0.23.1-2+b1) ... Setting up m4 (1.4.20-1) ... Setting up file (1:5.46-5) ... Setting up libelf1t64:amd64 (0.193-3) ... Setting up tzdata (2025b-5) ... Current default time zone: 'Etc/UTC' Local time is now: Sun Sep 14 22:05:32 UTC 2025. Universal Time is now: Sun Sep 14 22:05:32 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20240727.1) ... Setting up libunistring5:amd64 (1.3-2) ... Setting up autopoint (0.23.1-2) ... Setting up autoconf (2.72-3.1) ... Setting up libffi8:amd64 (3.5.2-2) ... Setting up dwz (0.16-2) ... Setting up sensible-utils (0.0.26) ... Setting up libuchardet0:amd64 (0.0.8-2) ... Setting up netbase (6.5) ... Setting up readline-common (8.3-3) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up gettext (0.23.1-2+b1) ... Setting up libtool (2.5.4-5) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libreadline8t64:amd64 (8.3-3) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up groff-base (1.23.0-9) ... Setting up libpython3.13-stdlib:amd64 (3.13.7-1) ... Setting up libpython3-stdlib:amd64 (3.13.5-1) ... Setting up python3.13 (3.13.7-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up python3 (3.13.5-1) ... Setting up python3-zipp (3.23.0-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up python3-typing-extensions (4.15.0-1) ... Setting up dh-python (6.20250414) ... Setting up python3-more-itertools (10.8.0-1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.1-1) ... Setting up python3-typeguard (4.4.4-1) ... Setting up python3-all (3.13.5-1) ... Setting up debhelper (13.26) ... Setting up python3-inflect (7.5.0-1) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-pkg-resources (78.1.1-0.1) ... Setting up python3-setuptools (78.1.1-0.1) ... Processing triggers for libc-bin (2.41-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/changeo-1.3.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../changeo_1.3.0-3_source.changes dpkg-buildpackage: info: source package changeo dpkg-buildpackage: info: source version 1.3.0-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 dpkg-source: info: using options from changeo-1.3.0/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ debian/rules clean dh clean --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py clean running clean removing '/build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.13' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py config running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py build running build running build_py creating /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo copying changeo/IO.py -> /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo copying changeo/__init__.py -> /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo copying changeo/Alignment.py -> /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo copying changeo/Multiprocessing.py -> /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo copying changeo/Gene.py -> /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo copying changeo/Defaults.py -> /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo copying changeo/Applications.py -> /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo copying changeo/Version.py -> /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo copying changeo/Commandline.py -> /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo copying changeo/Receptor.py -> /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo copying changeo/Distance.py -> /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo creating /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo/data copying changeo/data/m1n_compat_dist.tsv -> /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo/data copying changeo/data/mk_rs5nf_dist.tsv -> /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo/data copying changeo/data/hs1f_compat_dist.tsv -> /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo/data copying changeo/data/hh_s1f_dist.tsv -> /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo/data copying changeo/data/mk_rs1nf_dist.tsv -> /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo/data copying changeo/data/hh_s5f_dist.tsv -> /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo/data running build_scripts creating build/scripts-3.13 copying and adjusting bin/AlignRecords.py -> build/scripts-3.13 copying and adjusting bin/AssignGenes.py -> build/scripts-3.13 copying and adjusting bin/BuildTrees.py -> build/scripts-3.13 copying and adjusting bin/ConvertDb.py -> build/scripts-3.13 copying and adjusting bin/CreateGermlines.py -> build/scripts-3.13 copying and adjusting bin/DefineClones.py -> build/scripts-3.13 copying and adjusting bin/MakeDb.py -> build/scripts-3.13 copying and adjusting bin/ParseDb.py -> build/scripts-3.13 changing mode of build/scripts-3.13/AlignRecords.py from 644 to 755 changing mode of build/scripts-3.13/AssignGenes.py from 644 to 755 changing mode of build/scripts-3.13/BuildTrees.py from 644 to 755 changing mode of build/scripts-3.13/ConvertDb.py from 644 to 755 changing mode of build/scripts-3.13/CreateGermlines.py from 644 to 755 changing mode of build/scripts-3.13/DefineClones.py from 644 to 755 changing mode of build/scripts-3.13/MakeDb.py from 644 to 755 changing mode of build/scripts-3.13/ParseDb.py from 644 to 755 dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: cd /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build; python3.13 -m unittest discover -v ---------------------------------------------------------------------- Ran 0 tests in 0.000s NO TESTS RAN create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/changeo/ -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/changeo-1.3.0/debian/changeo running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running build_scripts running install_lib creating /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages creating /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo copying /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo/IO.py -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo copying /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo/__init__.py -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo copying /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo/Alignment.py -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo copying /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo/Multiprocessing.py -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo copying /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo/Gene.py -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo copying /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo/Defaults.py -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo copying /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo/Applications.py -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo copying /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo/Version.py -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo creating /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo/__pycache__ copying /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo/__pycache__/Defaults.cpython-313.pyc -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo/__pycache__ copying /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo/__pycache__/Version.cpython-313.pyc -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo/__pycache__ copying /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo/__pycache__ creating /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo/data copying /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo/data/m1n_compat_dist.tsv -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo/data copying /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo/data/mk_rs5nf_dist.tsv -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo/data copying /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo/data/hs1f_compat_dist.tsv -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo/data copying /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo/data/hh_s1f_dist.tsv -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo/data copying /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo/data/mk_rs1nf_dist.tsv -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo/data copying /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo/data/hh_s5f_dist.tsv -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo/data copying /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo/Commandline.py -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo copying /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo/Receptor.py -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo copying /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo/Distance.py -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo byte-compiling /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo/IO.py to IO.cpython-313.pyc byte-compiling /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo/Alignment.py to Alignment.cpython-313.pyc byte-compiling /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo/Multiprocessing.py to Multiprocessing.cpython-313.pyc byte-compiling /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo/Gene.py to Gene.cpython-313.pyc byte-compiling /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo/Defaults.py to Defaults.cpython-313.pyc byte-compiling /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo/Applications.py to Applications.cpython-313.pyc byte-compiling /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo/Version.py to Version.cpython-313.pyc byte-compiling /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo/Commandline.py to Commandline.cpython-313.pyc byte-compiling /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo/Receptor.py to Receptor.cpython-313.pyc byte-compiling /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo/Distance.py to Distance.cpython-313.pyc running install_egg_info running egg_info creating changeo.egg-info writing changeo.egg-info/PKG-INFO writing dependency_links to changeo.egg-info/dependency_links.txt writing requirements to changeo.egg-info/requires.txt writing top-level names to changeo.egg-info/top_level.txt writing manifest file 'changeo.egg-info/SOURCES.txt' reading manifest file 'changeo.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'changeo.egg-info/SOURCES.txt' Copying changeo.egg-info to /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo-1.3.0.egg-info Skipping SOURCES.txt running install_scripts creating /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/bin copying build/scripts-3.13/AlignRecords.py -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/bin copying build/scripts-3.13/ConvertDb.py -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/bin copying build/scripts-3.13/CreateGermlines.py -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/bin copying build/scripts-3.13/BuildTrees.py -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/bin copying build/scripts-3.13/ParseDb.py -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/bin copying build/scripts-3.13/AssignGenes.py -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/bin copying build/scripts-3.13/MakeDb.py -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/bin copying build/scripts-3.13/DefineClones.py -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/bin changing mode of /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/bin/AlignRecords.py to 755 changing mode of /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/bin/ConvertDb.py to 755 changing mode of /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/bin/CreateGermlines.py to 755 changing mode of /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/bin/BuildTrees.py to 755 changing mode of /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/bin/ParseDb.py to 755 changing mode of /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/bin/AssignGenes.py to 755 changing mode of /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/bin/MakeDb.py to 755 changing mode of /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/bin/DefineClones.py to 755 dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild debian/rules override_dh_installman make[1]: Entering directory '/build/reproducible-path/changeo-1.3.0' # Trick to avoid manpage to assume files with extension .py is a language dh_installman --language=C make[1]: Leaving directory '/build/reproducible-path/changeo-1.3.0' dh_python3 -O--buildsystem=pybuild I: dh_python3 tools:114: replacing shebang in debian/changeo/usr/bin/AlignRecords.py I: dh_python3 tools:114: replacing shebang in debian/changeo/usr/bin/ConvertDb.py I: dh_python3 tools:114: replacing shebang in debian/changeo/usr/bin/CreateGermlines.py I: dh_python3 tools:114: replacing shebang in debian/changeo/usr/bin/BuildTrees.py I: dh_python3 tools:114: replacing shebang in debian/changeo/usr/bin/ParseDb.py I: dh_python3 tools:114: replacing shebang in debian/changeo/usr/bin/AssignGenes.py I: dh_python3 tools:114: replacing shebang in debian/changeo/usr/bin/MakeDb.py I: dh_python3 tools:114: replacing shebang in debian/changeo/usr/bin/DefineClones.py dh_installsystemduser -O--buildsystem=pybuild dh_lintian -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'changeo' in '../changeo_1.3.0-3_all.deb'. dpkg-genbuildinfo --build=binary -O../changeo_1.3.0-3_amd64.buildinfo dpkg-genchanges --build=binary -O../changeo_1.3.0-3_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-source: info: using options from changeo-1.3.0/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/971949 and its subdirectories I: Current time: Sun Sep 14 10:06:03 -12 2025 I: pbuilder-time-stamp: 1757887563 Sun Sep 14 22:06:03 UTC 2025 I: Signing ./b1/changeo_1.3.0-3_amd64.buildinfo as changeo_1.3.0-3_amd64.buildinfo.asc Sun Sep 14 22:06:03 UTC 2025 I: Signed ./b1/changeo_1.3.0-3_amd64.buildinfo as ./b1/changeo_1.3.0-3_amd64.buildinfo.asc Sun Sep 14 22:06:03 UTC 2025 - build #1 for changeo/forky/amd64 on ionos11-amd64 done. Starting cleanup. All cleanup done. Sun Sep 14 22:06:03 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-A3jz2mQk, removing. /srv/reproducible-results/rbuild-debian/r-b-build.bIMVg8g0: total 16 drwxrwxr-x 2 jenkins jenkins 4096 Sep 14 22:06 b1 drwxrwxr-x 2 jenkins jenkins 4096 Sep 14 22:04 b2 -rw-rw-r-- 1 jenkins jenkins 2324 Dec 5 2024 changeo_1.3.0-3.dsc -rw------- 1 jenkins jenkins 3419 Sep 14 22:04 rbuildlog.zZDm7gk /srv/reproducible-results/rbuild-debian/r-b-build.bIMVg8g0/b1: total 196 -rw-r--r-- 1 jenkins jenkins 43640 Sep 14 22:06 build.log -rw-r--r-- 1 jenkins jenkins 15296 Sep 14 22:06 changeo_1.3.0-3.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2324 Sep 14 22:06 changeo_1.3.0-3.dsc -rw-r--r-- 1 jenkins jenkins 108280 Sep 14 22:06 changeo_1.3.0-3_all.deb -rw-r--r-- 1 jenkins jenkins 5427 Sep 14 22:06 changeo_1.3.0-3_amd64.buildinfo -rw-rw-r-- 1 jenkins jenkins 6309 Sep 14 22:06 changeo_1.3.0-3_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1140 Sep 14 22:06 changeo_1.3.0-3_amd64.changes -rw-r--r-- 1 jenkins jenkins 1301 Sep 14 22:06 changeo_1.3.0-3_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.bIMVg8g0/b2: total 0 Sun Sep 14 22:06:03 UTC 2025 I: Deleting $TMPDIR on ionos11-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sun Sep 14 10:04:38 -12 2025 I: pbuilder-time-stamp: 1757887478 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [changeo_1.3.0-3.dsc] I: copying [./changeo_1.3.0.orig-debian-tests-data.tar.gz] I: copying [./changeo_1.3.0.orig.tar.gz] I: copying [./changeo_1.3.0-3.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./changeo_1.3.0-3.dsc: no acceptable signature found dpkg-source: info: extracting changeo in changeo-1.3.0 dpkg-source: info: unpacking changeo_1.3.0.orig.tar.gz dpkg-source: info: unpacking changeo_1.3.0.orig-debian-tests-data.tar.gz dpkg-source: info: unpacking changeo_1.3.0-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying rm-setuptools.patch dpkg-source: info: applying python3.12-syntax.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/971949/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' DISTRIBUTION='forky' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='6507106ece4b43e2bf0310793e75747b' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='971949' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.bIMVg8g0/pbuilderrc_TwuC --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.bIMVg8g0/b1 --logfile b1/build.log changeo_1.3.0-3.dsc' SUDO_GID='111' SUDO_HOME='/var/lib/jenkins' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos11-amd64 6.12.43+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.43-1 (2025-08-27) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/971949/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, python3-all, python3-setuptools dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19917 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libpython3-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2-16{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-all{a} python3-autocommand{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-pkg-resources{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.13{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 56 newly installed, 0 to remove and 0 not upgraded. Need to get 19.2 MB of archives. After unpacking 74.7 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian forky/main amd64 libexpat1 amd64 2.7.1-2 [108 kB] Get: 2 http://deb.debian.org/debian forky/main amd64 libpython3.13-minimal amd64 3.13.7-1 [864 kB] Get: 3 http://deb.debian.org/debian forky/main amd64 python3.13-minimal amd64 3.13.7-1 [2216 kB] Get: 4 http://deb.debian.org/debian forky/main amd64 python3-minimal amd64 3.13.5-1 [27.2 kB] Get: 5 http://deb.debian.org/debian forky/main amd64 media-types all 13.0.0 [29.3 kB] Get: 6 http://deb.debian.org/debian forky/main amd64 netbase all 6.5 [12.4 kB] Get: 7 http://deb.debian.org/debian forky/main amd64 tzdata all 2025b-5 [260 kB] Get: 8 http://deb.debian.org/debian forky/main amd64 libffi8 amd64 3.5.2-2 [25.5 kB] Get: 9 http://deb.debian.org/debian forky/main amd64 readline-common all 8.3-3 [74.8 kB] Get: 10 http://deb.debian.org/debian forky/main amd64 libreadline8t64 amd64 8.3-3 [191 kB] Get: 11 http://deb.debian.org/debian forky/main amd64 libpython3.13-stdlib amd64 3.13.7-1 [1960 kB] Get: 12 http://deb.debian.org/debian forky/main amd64 python3.13 amd64 3.13.7-1 [761 kB] Get: 13 http://deb.debian.org/debian forky/main amd64 libpython3-stdlib amd64 3.13.5-1 [10.2 kB] Get: 14 http://deb.debian.org/debian forky/main amd64 python3 amd64 3.13.5-1 [28.2 kB] Get: 15 http://deb.debian.org/debian forky/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get: 16 http://deb.debian.org/debian forky/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 17 http://deb.debian.org/debian forky/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 18 http://deb.debian.org/debian forky/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 19 http://deb.debian.org/debian forky/main amd64 gettext-base amd64 0.23.1-2+b1 [244 kB] Get: 20 http://deb.debian.org/debian forky/main amd64 libuchardet0 amd64 0.0.8-2 [68.5 kB] Get: 21 http://deb.debian.org/debian forky/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 22 http://deb.debian.org/debian forky/main amd64 bsdextrautils amd64 2.41.1-2 [95.0 kB] Get: 23 http://deb.debian.org/debian forky/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 24 http://deb.debian.org/debian forky/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 25 http://deb.debian.org/debian forky/main amd64 m4 amd64 1.4.20-1 [324 kB] Get: 26 http://deb.debian.org/debian forky/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 27 http://deb.debian.org/debian forky/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 28 http://deb.debian.org/debian forky/main amd64 automake all 1:1.17-4 [862 kB] Get: 29 http://deb.debian.org/debian forky/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 30 http://deb.debian.org/debian forky/main amd64 libdebhelper-perl all 13.26 [91.8 kB] Get: 31 http://deb.debian.org/debian forky/main amd64 libtool all 2.5.4-5 [540 kB] Get: 32 http://deb.debian.org/debian forky/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 33 http://deb.debian.org/debian forky/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 34 http://deb.debian.org/debian forky/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 35 http://deb.debian.org/debian forky/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 36 http://deb.debian.org/debian forky/main amd64 libelf1t64 amd64 0.193-3 [192 kB] Get: 37 http://deb.debian.org/debian forky/main amd64 dwz amd64 0.16-2 [108 kB] Get: 38 http://deb.debian.org/debian forky/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 39 http://deb.debian.org/debian forky/main amd64 libxml2-16 amd64 2.14.5+dfsg-0.2 [638 kB] Get: 40 http://deb.debian.org/debian forky/main amd64 gettext amd64 0.23.1-2+b1 [1680 kB] Get: 41 http://deb.debian.org/debian forky/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 42 http://deb.debian.org/debian forky/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 43 http://deb.debian.org/debian forky/main amd64 debhelper all 13.26 [939 kB] Get: 44 http://deb.debian.org/debian forky/main amd64 dh-python all 6.20250414 [116 kB] Get: 45 http://deb.debian.org/debian forky/main amd64 python3-all amd64 3.13.5-1 [1048 B] Get: 46 http://deb.debian.org/debian forky/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 47 http://deb.debian.org/debian forky/main amd64 python3-more-itertools all 10.8.0-1 [71.7 kB] Get: 48 http://deb.debian.org/debian forky/main amd64 python3-typing-extensions all 4.15.0-1 [92.4 kB] Get: 49 http://deb.debian.org/debian forky/main amd64 python3-typeguard all 4.4.4-1 [37.1 kB] Get: 50 http://deb.debian.org/debian forky/main amd64 python3-inflect all 7.5.0-1 [33.0 kB] Get: 51 http://deb.debian.org/debian forky/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 52 http://deb.debian.org/debian forky/main amd64 python3-pkg-resources all 78.1.1-0.1 [224 kB] Get: 53 http://deb.debian.org/debian forky/main amd64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 54 http://deb.debian.org/debian forky/main amd64 python3-zipp all 3.23.0-1 [11.0 kB] Get: 55 http://deb.debian.org/debian forky/main amd64 python3-setuptools all 78.1.1-0.1 [738 kB] Get: 56 http://deb.debian.org/debian forky/main amd64 python3-jaraco.context all 6.0.1-1 [8276 B] Fetched 19.2 MB in 0s (111 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19917 files and directories currently installed.) Preparing to unpack .../libexpat1_2.7.1-2_amd64.deb ... Unpacking libexpat1:amd64 (2.7.1-2) ... Selecting previously unselected package libpython3.13-minimal:amd64. Preparing to unpack .../libpython3.13-minimal_3.13.7-1_amd64.deb ... Unpacking libpython3.13-minimal:amd64 (3.13.7-1) ... 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Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.3-3) ... Selecting previously unselected package libpython3.13-stdlib:amd64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.7-1_amd64.deb ... Unpacking libpython3.13-stdlib:amd64 (3.13.7-1) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.7-1_amd64.deb ... Unpacking python3.13 (3.13.7-1) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../9-libpython3-stdlib_3.13.5-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.13.5-1) ... Setting up python3-minimal (3.13.5-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21266 files and directories currently installed.) Preparing to unpack .../00-python3_3.13.5-1_amd64.deb ... Unpacking python3 (3.13.5-1) ... Selecting previously unselected package sensible-utils. 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Setting up libarchive-zip-perl (1.68-1) ... Setting up libxml2-16:amd64 (2.14.5+dfsg-0.2) ... Setting up libdebhelper-perl (13.26) ... Setting up libmagic1t64:amd64 (1:5.46-5) ... Setting up gettext-base (0.23.1-2+b1) ... Setting up m4 (1.4.20-1) ... Setting up file (1:5.46-5) ... Setting up libelf1t64:amd64 (0.193-3) ... Setting up tzdata (2025b-5) ... Current default time zone: 'Etc/UTC' Local time is now: Sun Sep 14 22:05:32 UTC 2025. Universal Time is now: Sun Sep 14 22:05:32 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20240727.1) ... Setting up libunistring5:amd64 (1.3-2) ... Setting up autopoint (0.23.1-2) ... Setting up autoconf (2.72-3.1) ... Setting up libffi8:amd64 (3.5.2-2) ... Setting up dwz (0.16-2) ... Setting up sensible-utils (0.0.26) ... Setting up libuchardet0:amd64 (0.0.8-2) ... Setting up netbase (6.5) ... Setting up readline-common (8.3-3) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up gettext (0.23.1-2+b1) ... Setting up libtool (2.5.4-5) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libreadline8t64:amd64 (8.3-3) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up groff-base (1.23.0-9) ... Setting up libpython3.13-stdlib:amd64 (3.13.7-1) ... Setting up libpython3-stdlib:amd64 (3.13.5-1) ... Setting up python3.13 (3.13.7-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up python3 (3.13.5-1) ... Setting up python3-zipp (3.23.0-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up python3-typing-extensions (4.15.0-1) ... Setting up dh-python (6.20250414) ... Setting up python3-more-itertools (10.8.0-1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.1-1) ... Setting up python3-typeguard (4.4.4-1) ... Setting up python3-all (3.13.5-1) ... Setting up debhelper (13.26) ... Setting up python3-inflect (7.5.0-1) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-pkg-resources (78.1.1-0.1) ... Setting up python3-setuptools (78.1.1-0.1) ... Processing triggers for libc-bin (2.41-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/changeo-1.3.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../changeo_1.3.0-3_source.changes dpkg-buildpackage: info: source package changeo dpkg-buildpackage: info: source version 1.3.0-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 dpkg-source: info: using options from changeo-1.3.0/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ debian/rules clean dh clean --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py clean running clean removing '/build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.13' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py config running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py build running build running build_py creating /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo copying changeo/IO.py -> /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo copying changeo/__init__.py -> /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo copying changeo/Alignment.py -> /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo copying changeo/Multiprocessing.py -> /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo copying changeo/Gene.py -> /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo copying changeo/Defaults.py -> /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo copying changeo/Applications.py -> /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo copying changeo/Version.py -> /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo copying changeo/Commandline.py -> /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo copying changeo/Receptor.py -> /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo copying changeo/Distance.py -> /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo creating /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo/data copying changeo/data/m1n_compat_dist.tsv -> /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo/data copying changeo/data/mk_rs5nf_dist.tsv -> /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo/data copying changeo/data/hs1f_compat_dist.tsv -> /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo/data copying changeo/data/hh_s1f_dist.tsv -> /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo/data copying changeo/data/mk_rs1nf_dist.tsv -> /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo/data copying changeo/data/hh_s5f_dist.tsv -> /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo/data running build_scripts creating build/scripts-3.13 copying and adjusting bin/AlignRecords.py -> build/scripts-3.13 copying and adjusting bin/AssignGenes.py -> build/scripts-3.13 copying and adjusting bin/BuildTrees.py -> build/scripts-3.13 copying and adjusting bin/ConvertDb.py -> build/scripts-3.13 copying and adjusting bin/CreateGermlines.py -> build/scripts-3.13 copying and adjusting bin/DefineClones.py -> build/scripts-3.13 copying and adjusting bin/MakeDb.py -> build/scripts-3.13 copying and adjusting bin/ParseDb.py -> build/scripts-3.13 changing mode of build/scripts-3.13/AlignRecords.py from 644 to 755 changing mode of build/scripts-3.13/AssignGenes.py from 644 to 755 changing mode of build/scripts-3.13/BuildTrees.py from 644 to 755 changing mode of build/scripts-3.13/ConvertDb.py from 644 to 755 changing mode of build/scripts-3.13/CreateGermlines.py from 644 to 755 changing mode of build/scripts-3.13/DefineClones.py from 644 to 755 changing mode of build/scripts-3.13/MakeDb.py from 644 to 755 changing mode of build/scripts-3.13/ParseDb.py from 644 to 755 dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: cd /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build; python3.13 -m unittest discover -v ---------------------------------------------------------------------- Ran 0 tests in 0.000s NO TESTS RAN create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/changeo/ -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/changeo-1.3.0/debian/changeo running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running build_scripts running install_lib creating /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages creating /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo copying /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo/IO.py -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo copying /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo/__init__.py -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo copying /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo/Alignment.py -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo copying /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo/Multiprocessing.py -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo copying /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo/Gene.py -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo copying /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo/Defaults.py -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo copying /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo/Applications.py -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo copying /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo/Version.py -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo creating /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo/__pycache__ copying /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo/__pycache__/Defaults.cpython-313.pyc -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo/__pycache__ copying /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo/__pycache__/Version.cpython-313.pyc -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo/__pycache__ copying /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo/__pycache__ creating /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo/data copying /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo/data/m1n_compat_dist.tsv -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo/data copying /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo/data/mk_rs5nf_dist.tsv -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo/data copying /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo/data/hs1f_compat_dist.tsv -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo/data copying /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo/data/hh_s1f_dist.tsv -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo/data copying /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo/data/mk_rs1nf_dist.tsv -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo/data copying /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo/data/hh_s5f_dist.tsv -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo/data copying /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo/Commandline.py -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo copying /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo/Receptor.py -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo copying /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo/Distance.py -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo byte-compiling /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo/IO.py to IO.cpython-313.pyc byte-compiling /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo/Alignment.py to Alignment.cpython-313.pyc byte-compiling /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo/Multiprocessing.py to Multiprocessing.cpython-313.pyc byte-compiling /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo/Gene.py to Gene.cpython-313.pyc byte-compiling /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo/Defaults.py to Defaults.cpython-313.pyc byte-compiling /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo/Applications.py to Applications.cpython-313.pyc byte-compiling /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo/Version.py to Version.cpython-313.pyc byte-compiling /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo/Commandline.py to Commandline.cpython-313.pyc byte-compiling /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo/Receptor.py to Receptor.cpython-313.pyc byte-compiling /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo/Distance.py to Distance.cpython-313.pyc running install_egg_info running egg_info creating changeo.egg-info writing changeo.egg-info/PKG-INFO writing dependency_links to changeo.egg-info/dependency_links.txt writing requirements to changeo.egg-info/requires.txt writing top-level names to changeo.egg-info/top_level.txt writing manifest file 'changeo.egg-info/SOURCES.txt' reading manifest file 'changeo.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'changeo.egg-info/SOURCES.txt' Copying changeo.egg-info to /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo-1.3.0.egg-info Skipping SOURCES.txt running install_scripts creating /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/bin copying build/scripts-3.13/AlignRecords.py -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/bin copying build/scripts-3.13/ConvertDb.py -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/bin copying build/scripts-3.13/CreateGermlines.py -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/bin copying build/scripts-3.13/BuildTrees.py -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/bin copying build/scripts-3.13/ParseDb.py -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/bin copying build/scripts-3.13/AssignGenes.py -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/bin copying build/scripts-3.13/MakeDb.py -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/bin copying build/scripts-3.13/DefineClones.py -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/bin changing mode of /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/bin/AlignRecords.py to 755 changing mode of /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/bin/ConvertDb.py to 755 changing mode of /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/bin/CreateGermlines.py to 755 changing mode of /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/bin/BuildTrees.py to 755 changing mode of /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/bin/ParseDb.py to 755 changing mode of /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/bin/AssignGenes.py to 755 changing mode of /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/bin/MakeDb.py to 755 changing mode of /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/bin/DefineClones.py to 755 dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild debian/rules override_dh_installman make[1]: Entering directory '/build/reproducible-path/changeo-1.3.0' # Trick to avoid manpage to assume files with extension .py is a language dh_installman --language=C make[1]: Leaving directory '/build/reproducible-path/changeo-1.3.0' dh_python3 -O--buildsystem=pybuild I: dh_python3 tools:114: replacing shebang in debian/changeo/usr/bin/AlignRecords.py I: dh_python3 tools:114: replacing shebang in debian/changeo/usr/bin/ConvertDb.py I: dh_python3 tools:114: replacing shebang in debian/changeo/usr/bin/CreateGermlines.py I: dh_python3 tools:114: replacing shebang in debian/changeo/usr/bin/BuildTrees.py I: dh_python3 tools:114: replacing shebang in debian/changeo/usr/bin/ParseDb.py I: dh_python3 tools:114: replacing shebang in debian/changeo/usr/bin/AssignGenes.py I: dh_python3 tools:114: replacing shebang in debian/changeo/usr/bin/MakeDb.py I: dh_python3 tools:114: replacing shebang in debian/changeo/usr/bin/DefineClones.py dh_installsystemduser -O--buildsystem=pybuild dh_lintian -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'changeo' in '../changeo_1.3.0-3_all.deb'. dpkg-genbuildinfo --build=binary -O../changeo_1.3.0-3_amd64.buildinfo dpkg-genchanges --build=binary -O../changeo_1.3.0-3_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-source: info: using options from changeo-1.3.0/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/971949 and its subdirectories I: Current time: Sun Sep 14 10:06:03 -12 2025 I: pbuilder-time-stamp: 1757887563 Sun Sep 14 22:06:03 UTC 2025 I: 1st build successful. Starting 2nd build on remote node ionos15-amd64.debian.net. Sun Sep 14 22:06:03 UTC 2025 I: Preparing to do remote build '2' on ionos15-amd64.debian.net. Sun Sep 14 22:06:03 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos15-amd64.debian.net is marked as down. Sun Sep 14 22:06:03 UTC 2025 - checking via ssh if ionos15-amd64.debian.net is up. removed '/tmp/read-only-fs-test-xeFf0B' ==================================================================================== Sun Oct 18 04:29:03 UTC 2026 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos15-amd64, called using "2 changeo forky /srv/reproducible-results/rbuild-debian/r-b-build.bIMVg8g0 1.3.0-3" as arguments. Sun Oct 18 04:29:03 UTC 2026 - actually running "reproducible_build.sh" (md5sum cc591790ab2c8e13f5e554202b95c89c) as "/tmp/jenkins-script-5vXez6Ek" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Sun Oct 18 04:29:03 UTC 2026 I: Downloading source for forky/changeo=1.3.0-3 Reading package lists... NOTICE: 'changeo' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/changeo.git Please use: git clone https://salsa.debian.org/med-team/changeo.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 683 kB of source archives. Get:1 http://deb.debian.org/debian forky/main changeo 1.3.0-3 (dsc) [2324 B] Get:2 http://deb.debian.org/debian forky/main changeo 1.3.0-3 (tar) [514 kB] Get:3 http://deb.debian.org/debian forky/main changeo 1.3.0-3 (tar) [152 kB] Get:4 http://deb.debian.org/debian forky/main changeo 1.3.0-3 (diff) [15.3 kB] Fetched 683 kB in 0s (15.1 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'changeo' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/changeo.git Please use: git clone https://salsa.debian.org/med-team/changeo.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 683 kB of source archives. Get:1 http://deb.debian.org/debian forky/main changeo 1.3.0-3 (dsc) [2324 B] Get:2 http://deb.debian.org/debian forky/main changeo 1.3.0-3 (tar) [514 kB] Get:3 http://deb.debian.org/debian forky/main changeo 1.3.0-3 (tar) [152 kB] Get:4 http://deb.debian.org/debian forky/main changeo 1.3.0-3 (diff) [15.3 kB] Fetched 683 kB in 0s (15.1 MB/s) Download complete and in download only mode ============================================================================= Re-Building changeo in forky on amd64 on ionos15-amd64 now. Date: Sun Oct 18 04:29:03 UTC 2026 Date UTC: Sun Oct 18 04:29:03 UTC 2026 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.bIMVg8g0 + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.bIMVg8g0/pbuilderrc_kpEj + case ${ARCH} in + case $ARCH in + locale=et_EE + language=et + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' changeo = debian-installer -o changeo = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' changeo = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.bIMVg8g0/pbuilderrc_kpEj --distribution forky --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.bIMVg8g0/b2 --logfile b2/build.log changeo_1.3.0-3.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Sun Oct 18 18:29:03 +14 2026 I: pbuilder-time-stamp: 1792297743 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [changeo_1.3.0-3.dsc] I: copying [./changeo_1.3.0.orig-debian-tests-data.tar.gz] I: copying [./changeo_1.3.0.orig.tar.gz] I: copying [./changeo_1.3.0-3.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./changeo_1.3.0-3.dsc: no acceptable signature found dpkg-source: info: extracting changeo in changeo-1.3.0 dpkg-source: info: unpacking changeo_1.3.0.orig.tar.gz dpkg-source: info: unpacking changeo_1.3.0.orig-debian-tests-data.tar.gz dpkg-source: info: unpacking changeo_1.3.0-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying rm-setuptools.patch dpkg-source: info: applying python3.12-syntax.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1312152/tmp/hooks/D01_modify_environment starting debug: Running on ionos15-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Oct 18 04:29 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/1312152/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/1312152/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.3.3(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DIRSTACK=() DISTRIBUTION=forky EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=75126f1e9ec24d97b9a0e566aa6338fb LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=1312152 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.bIMVg8g0/pbuilderrc_kpEj --distribution forky --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.bIMVg8g0/b2 --logfile b2/build.log changeo_1.3.0-3.dsc' SUDO_GID=111 SUDO_HOME=/var/lib/jenkins SUDO_UID=106 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://213.165.73.152:3128 I: uname -a Linux i-capture-the-hostname 6.12.43+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.43-1 (2025-08-27) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1312152/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, python3-all, python3-setuptools dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19917 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libpython3-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2-16{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-all{a} python3-autocommand{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-pkg-resources{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.13{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 56 newly installed, 0 to remove and 0 not upgraded. Need to get 19.2 MB of archives. After unpacking 74.7 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian forky/main amd64 libexpat1 amd64 2.7.1-2 [108 kB] Get: 2 http://deb.debian.org/debian forky/main amd64 libpython3.13-minimal amd64 3.13.7-1 [864 kB] Get: 3 http://deb.debian.org/debian forky/main amd64 python3.13-minimal amd64 3.13.7-1 [2216 kB] Get: 4 http://deb.debian.org/debian forky/main amd64 python3-minimal amd64 3.13.5-1 [27.2 kB] Get: 5 http://deb.debian.org/debian forky/main amd64 media-types all 13.0.0 [29.3 kB] Get: 6 http://deb.debian.org/debian forky/main amd64 netbase all 6.5 [12.4 kB] Get: 7 http://deb.debian.org/debian forky/main amd64 tzdata all 2025b-5 [260 kB] Get: 8 http://deb.debian.org/debian forky/main amd64 libffi8 amd64 3.5.2-2 [25.5 kB] Get: 9 http://deb.debian.org/debian forky/main amd64 readline-common all 8.3-3 [74.8 kB] Get: 10 http://deb.debian.org/debian forky/main amd64 libreadline8t64 amd64 8.3-3 [191 kB] Get: 11 http://deb.debian.org/debian forky/main amd64 libpython3.13-stdlib amd64 3.13.7-1 [1960 kB] Get: 12 http://deb.debian.org/debian forky/main amd64 python3.13 amd64 3.13.7-1 [761 kB] Get: 13 http://deb.debian.org/debian forky/main amd64 libpython3-stdlib amd64 3.13.5-1 [10.2 kB] Get: 14 http://deb.debian.org/debian forky/main amd64 python3 amd64 3.13.5-1 [28.2 kB] Get: 15 http://deb.debian.org/debian forky/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get: 16 http://deb.debian.org/debian forky/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 17 http://deb.debian.org/debian forky/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 18 http://deb.debian.org/debian forky/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 19 http://deb.debian.org/debian forky/main amd64 gettext-base amd64 0.23.1-2+b1 [244 kB] Get: 20 http://deb.debian.org/debian forky/main amd64 libuchardet0 amd64 0.0.8-2 [68.5 kB] Get: 21 http://deb.debian.org/debian forky/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 22 http://deb.debian.org/debian forky/main amd64 bsdextrautils amd64 2.41.1-2 [95.0 kB] Get: 23 http://deb.debian.org/debian forky/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 24 http://deb.debian.org/debian forky/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 25 http://deb.debian.org/debian forky/main amd64 m4 amd64 1.4.20-1 [324 kB] Get: 26 http://deb.debian.org/debian forky/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 27 http://deb.debian.org/debian forky/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 28 http://deb.debian.org/debian forky/main amd64 automake all 1:1.17-4 [862 kB] Get: 29 http://deb.debian.org/debian forky/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 30 http://deb.debian.org/debian forky/main amd64 libdebhelper-perl all 13.26 [91.8 kB] Get: 31 http://deb.debian.org/debian forky/main amd64 libtool all 2.5.4-5 [540 kB] Get: 32 http://deb.debian.org/debian forky/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 33 http://deb.debian.org/debian forky/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 34 http://deb.debian.org/debian forky/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 35 http://deb.debian.org/debian forky/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 36 http://deb.debian.org/debian forky/main amd64 libelf1t64 amd64 0.193-3 [192 kB] Get: 37 http://deb.debian.org/debian forky/main amd64 dwz amd64 0.16-2 [108 kB] Get: 38 http://deb.debian.org/debian forky/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 39 http://deb.debian.org/debian forky/main amd64 libxml2-16 amd64 2.14.5+dfsg-0.2 [638 kB] Get: 40 http://deb.debian.org/debian forky/main amd64 gettext amd64 0.23.1-2+b1 [1680 kB] Get: 41 http://deb.debian.org/debian forky/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 42 http://deb.debian.org/debian forky/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 43 http://deb.debian.org/debian forky/main amd64 debhelper all 13.26 [939 kB] Get: 44 http://deb.debian.org/debian forky/main amd64 dh-python all 6.20250414 [116 kB] Get: 45 http://deb.debian.org/debian forky/main amd64 python3-all amd64 3.13.5-1 [1048 B] Get: 46 http://deb.debian.org/debian forky/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 47 http://deb.debian.org/debian forky/main amd64 python3-more-itertools all 10.8.0-1 [71.7 kB] Get: 48 http://deb.debian.org/debian forky/main amd64 python3-typing-extensions all 4.15.0-1 [92.4 kB] Get: 49 http://deb.debian.org/debian forky/main amd64 python3-typeguard all 4.4.4-1 [37.1 kB] Get: 50 http://deb.debian.org/debian forky/main amd64 python3-inflect all 7.5.0-1 [33.0 kB] Get: 51 http://deb.debian.org/debian forky/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 52 http://deb.debian.org/debian forky/main amd64 python3-pkg-resources all 78.1.1-0.1 [224 kB] Get: 53 http://deb.debian.org/debian forky/main amd64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 54 http://deb.debian.org/debian forky/main amd64 python3-zipp all 3.23.0-1 [11.0 kB] Get: 55 http://deb.debian.org/debian forky/main amd64 python3-setuptools all 78.1.1-0.1 [738 kB] Get: 56 http://deb.debian.org/debian forky/main amd64 python3-jaraco.context all 6.0.1-1 [8276 B] Fetched 19.2 MB in 12s (1577 kB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19917 files and directories currently installed.) Preparing to unpack .../libexpat1_2.7.1-2_amd64.deb ... Unpacking libexpat1:amd64 (2.7.1-2) ... Selecting previously unselected package libpython3.13-minimal:amd64. Preparing to unpack .../libpython3.13-minimal_3.13.7-1_amd64.deb ... Unpacking libpython3.13-minimal:amd64 (3.13.7-1) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../python3.13-minimal_3.13.7-1_amd64.deb ... Unpacking python3.13-minimal (3.13.7-1) ... Setting up libpython3.13-minimal:amd64 (3.13.7-1) ... Setting up libexpat1:amd64 (2.7.1-2) ... Setting up python3.13-minimal (3.13.7-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20251 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.13.5-1_amd64.deb ... Unpacking python3-minimal (3.13.5-1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_13.0.0_all.deb ... Unpacking media-types (13.0.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.5_all.deb ... Unpacking netbase (6.5) ... Selecting previously unselected package tzdata. Preparing to unpack .../3-tzdata_2025b-5_all.deb ... Unpacking tzdata (2025b-5) ... Selecting previously unselected package libffi8:amd64. Preparing to unpack .../4-libffi8_3.5.2-2_amd64.deb ... Unpacking libffi8:amd64 (3.5.2-2) ... Selecting previously unselected package readline-common. Preparing to unpack .../5-readline-common_8.3-3_all.deb ... Unpacking readline-common (8.3-3) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../6-libreadline8t64_8.3-3_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.3-3) ... Selecting previously unselected package libpython3.13-stdlib:amd64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.7-1_amd64.deb ... Unpacking libpython3.13-stdlib:amd64 (3.13.7-1) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.7-1_amd64.deb ... Unpacking python3.13 (3.13.7-1) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../9-libpython3-stdlib_3.13.5-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.13.5-1) ... Setting up python3-minimal (3.13.5-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21266 files and directories currently installed.) Preparing to unpack .../00-python3_3.13.5-1_amd64.deb ... Unpacking python3 (3.13.5-1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.46-5_amd64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../03-libmagic1t64_1%3a5.46-5_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.46-5_amd64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../05-gettext-base_0.23.1-2+b1_amd64.deb ... Unpacking gettext-base (0.23.1-2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../06-libuchardet0_0.0.8-2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-2) ... Selecting previously unselected package groff-base. Preparing to unpack .../07-groff-base_1.23.0-9_amd64.deb ... Unpacking groff-base (1.23.0-9) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../08-bsdextrautils_2.41.1-2_amd64.deb ... Unpacking bsdextrautils (2.41.1-2) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../09-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../10-man-db_2.13.1-1_amd64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../11-m4_1.4.20-1_amd64.deb ... Unpacking m4 (1.4.20-1) ... Selecting previously unselected package autoconf. Preparing to unpack .../12-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../13-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. 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Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.15.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.15.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../21-dh-strip-nondeterminism_1.15.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.15.0-1) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../22-libelf1t64_0.193-3_amd64.deb ... Unpacking libelf1t64:amd64 (0.193-3) ... Selecting previously unselected package dwz. Preparing to unpack .../23-dwz_0.16-2_amd64.deb ... Unpacking dwz (0.16-2) ... Selecting previously unselected package libunistring5:amd64. Preparing to unpack .../24-libunistring5_1.3-2_amd64.deb ... Unpacking libunistring5:amd64 (1.3-2) ... Selecting previously unselected package libxml2-16:amd64. Preparing to unpack .../25-libxml2-16_2.14.5+dfsg-0.2_amd64.deb ... Unpacking libxml2-16:amd64 (2.14.5+dfsg-0.2) ... Selecting previously unselected package gettext. Preparing to unpack .../26-gettext_0.23.1-2+b1_amd64.deb ... Unpacking gettext (0.23.1-2+b1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../27-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../28-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../29-debhelper_13.26_all.deb ... Unpacking debhelper (13.26) ... Selecting previously unselected package dh-python. Preparing to unpack .../30-dh-python_6.20250414_all.deb ... Unpacking dh-python (6.20250414) ... Selecting previously unselected package python3-all. Preparing to unpack .../31-python3-all_3.13.5-1_amd64.deb ... Unpacking python3-all (3.13.5-1) ... Selecting previously unselected package python3-autocommand. Preparing to unpack .../32-python3-autocommand_2.2.2-3_all.deb ... Unpacking python3-autocommand (2.2.2-3) ... Selecting previously unselected package python3-more-itertools. Preparing to unpack .../33-python3-more-itertools_10.8.0-1_all.deb ... Unpacking python3-more-itertools (10.8.0-1) ... Selecting previously unselected package python3-typing-extensions. Preparing to unpack .../34-python3-typing-extensions_4.15.0-1_all.deb ... Unpacking python3-typing-extensions (4.15.0-1) ... Selecting previously unselected package python3-typeguard. Preparing to unpack .../35-python3-typeguard_4.4.4-1_all.deb ... Unpacking python3-typeguard (4.4.4-1) ... Selecting previously unselected package python3-inflect. Preparing to unpack .../36-python3-inflect_7.5.0-1_all.deb ... Unpacking python3-inflect (7.5.0-1) ... Selecting previously unselected package python3-jaraco.functools. Preparing to unpack .../37-python3-jaraco.functools_4.1.0-1_all.deb ... Unpacking python3-jaraco.functools (4.1.0-1) ... Selecting previously unselected package python3-pkg-resources. Preparing to unpack .../38-python3-pkg-resources_78.1.1-0.1_all.deb ... Unpacking python3-pkg-resources (78.1.1-0.1) ... Selecting previously unselected package python3-jaraco.text. Preparing to unpack .../39-python3-jaraco.text_4.0.0-1_all.deb ... Unpacking python3-jaraco.text (4.0.0-1) ... Selecting previously unselected package python3-zipp. Preparing to unpack .../40-python3-zipp_3.23.0-1_all.deb ... Unpacking python3-zipp (3.23.0-1) ... Selecting previously unselected package python3-setuptools. Preparing to unpack .../41-python3-setuptools_78.1.1-0.1_all.deb ... Unpacking python3-setuptools (78.1.1-0.1) ... Selecting previously unselected package python3-jaraco.context. Preparing to unpack .../42-python3-jaraco.context_6.0.1-1_all.deb ... Unpacking python3-jaraco.context (6.0.1-1) ... Setting up media-types (13.0.0) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up bsdextrautils (2.41.1-2) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libxml2-16:amd64 (2.14.5+dfsg-0.2) ... Setting up libdebhelper-perl (13.26) ... Setting up libmagic1t64:amd64 (1:5.46-5) ... Setting up gettext-base (0.23.1-2+b1) ... Setting up m4 (1.4.20-1) ... Setting up file (1:5.46-5) ... Setting up libelf1t64:amd64 (0.193-3) ... Setting up tzdata (2025b-5) ... Current default time zone: 'Etc/UTC' Local time is now: Sun Oct 18 04:32:34 UTC 2026. Universal Time is now: Sun Oct 18 04:32:34 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20240727.1) ... Setting up libunistring5:amd64 (1.3-2) ... Setting up autopoint (0.23.1-2) ... Setting up autoconf (2.72-3.1) ... Setting up libffi8:amd64 (3.5.2-2) ... Setting up dwz (0.16-2) ... Setting up sensible-utils (0.0.26) ... Setting up libuchardet0:amd64 (0.0.8-2) ... Setting up netbase (6.5) ... Setting up readline-common (8.3-3) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up gettext (0.23.1-2+b1) ... Setting up libtool (2.5.4-5) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libreadline8t64:amd64 (8.3-3) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up groff-base (1.23.0-9) ... Setting up libpython3.13-stdlib:amd64 (3.13.7-1) ... Setting up libpython3-stdlib:amd64 (3.13.5-1) ... Setting up python3.13 (3.13.7-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up python3 (3.13.5-1) ... Setting up python3-zipp (3.23.0-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up python3-typing-extensions (4.15.0-1) ... Setting up dh-python (6.20250414) ... Setting up python3-more-itertools (10.8.0-1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.1-1) ... Setting up python3-typeguard (4.4.4-1) ... Setting up python3-all (3.13.5-1) ... Setting up debhelper (13.26) ... Setting up python3-inflect (7.5.0-1) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-pkg-resources (78.1.1-0.1) ... Setting up python3-setuptools (78.1.1-0.1) ... Processing triggers for libc-bin (2.41-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/1312152/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for forky I: user script /srv/workspace/pbuilder/1312152/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/changeo-1.3.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../changeo_1.3.0-3_source.changes dpkg-buildpackage: info: source package changeo dpkg-buildpackage: info: source version 1.3.0-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 dpkg-source: info: using options from changeo-1.3.0/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ debian/rules clean dh clean --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py clean running clean removing '/build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.13' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py config running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py build running build running build_py creating /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo copying changeo/Alignment.py -> /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo copying changeo/Multiprocessing.py -> /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo copying changeo/IO.py -> /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo copying changeo/Commandline.py -> /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo copying changeo/Receptor.py -> /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo copying changeo/Distance.py -> /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo copying changeo/Version.py -> /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo copying changeo/Gene.py -> /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo copying changeo/__init__.py -> /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo copying changeo/Defaults.py -> /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo copying changeo/Applications.py -> /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo creating /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo/data copying changeo/data/m1n_compat_dist.tsv -> /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo/data copying changeo/data/hs1f_compat_dist.tsv -> /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo/data copying changeo/data/mk_rs1nf_dist.tsv -> /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo/data copying changeo/data/hh_s5f_dist.tsv -> /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo/data copying changeo/data/mk_rs5nf_dist.tsv -> /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo/data copying changeo/data/hh_s1f_dist.tsv -> /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo/data running build_scripts creating build/scripts-3.13 copying and adjusting bin/AlignRecords.py -> build/scripts-3.13 copying and adjusting bin/AssignGenes.py -> build/scripts-3.13 copying and adjusting bin/BuildTrees.py -> build/scripts-3.13 copying and adjusting bin/ConvertDb.py -> build/scripts-3.13 copying and adjusting bin/CreateGermlines.py -> build/scripts-3.13 copying and adjusting bin/DefineClones.py -> build/scripts-3.13 copying and adjusting bin/MakeDb.py -> build/scripts-3.13 copying and adjusting bin/ParseDb.py -> build/scripts-3.13 changing mode of build/scripts-3.13/AlignRecords.py from 644 to 755 changing mode of build/scripts-3.13/AssignGenes.py from 644 to 755 changing mode of build/scripts-3.13/BuildTrees.py from 644 to 755 changing mode of build/scripts-3.13/ConvertDb.py from 644 to 755 changing mode of build/scripts-3.13/CreateGermlines.py from 644 to 755 changing mode of build/scripts-3.13/DefineClones.py from 644 to 755 changing mode of build/scripts-3.13/MakeDb.py from 644 to 755 changing mode of build/scripts-3.13/ParseDb.py from 644 to 755 dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: cd /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build; python3.13 -m unittest discover -v ---------------------------------------------------------------------- Ran 0 tests in 0.000s NO TESTS RAN create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/changeo/ -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/changeo-1.3.0/debian/changeo running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running build_scripts running install_lib creating /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages creating /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo copying /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo/Alignment.py -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo copying /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo/Multiprocessing.py -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo copying /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo/IO.py -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo copying /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo/Commandline.py -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo copying /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo/Receptor.py -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo copying /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo/Distance.py -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo creating /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo/__pycache__ copying /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo/__pycache__ copying /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo/__pycache__/Version.cpython-313.pyc -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo/__pycache__ copying /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo/__pycache__/Defaults.cpython-313.pyc -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo/__pycache__ creating /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo/data copying /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo/data/m1n_compat_dist.tsv -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo/data copying /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo/data/hs1f_compat_dist.tsv -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo/data copying /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo/data/mk_rs1nf_dist.tsv -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo/data copying /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo/data/hh_s5f_dist.tsv -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo/data copying /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo/data/mk_rs5nf_dist.tsv -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo/data copying /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo/data/hh_s1f_dist.tsv -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo/data copying /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo/Version.py -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo copying /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo/Gene.py -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo copying /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo/__init__.py -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo copying /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo/Defaults.py -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo copying /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo/Applications.py -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo byte-compiling /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo/Alignment.py to Alignment.cpython-313.pyc byte-compiling /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo/Multiprocessing.py to Multiprocessing.cpython-313.pyc byte-compiling /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo/IO.py to IO.cpython-313.pyc byte-compiling /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo/Commandline.py to Commandline.cpython-313.pyc byte-compiling /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo/Receptor.py to Receptor.cpython-313.pyc byte-compiling /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo/Distance.py to Distance.cpython-313.pyc byte-compiling /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo/Version.py to Version.cpython-313.pyc byte-compiling /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo/Gene.py to Gene.cpython-313.pyc byte-compiling /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo/Defaults.py to Defaults.cpython-313.pyc byte-compiling /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo/Applications.py to Applications.cpython-313.pyc running install_egg_info running egg_info creating changeo.egg-info writing changeo.egg-info/PKG-INFO writing dependency_links to changeo.egg-info/dependency_links.txt writing requirements to changeo.egg-info/requires.txt writing top-level names to changeo.egg-info/top_level.txt writing manifest file 'changeo.egg-info/SOURCES.txt' reading manifest file 'changeo.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'changeo.egg-info/SOURCES.txt' Copying changeo.egg-info to /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo-1.3.0.egg-info Skipping SOURCES.txt running install_scripts creating /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/bin copying build/scripts-3.13/AssignGenes.py -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/bin copying build/scripts-3.13/BuildTrees.py -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/bin copying build/scripts-3.13/AlignRecords.py -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/bin copying build/scripts-3.13/DefineClones.py -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/bin copying build/scripts-3.13/ParseDb.py -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/bin copying build/scripts-3.13/CreateGermlines.py -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/bin copying build/scripts-3.13/ConvertDb.py -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/bin copying build/scripts-3.13/MakeDb.py -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/bin changing mode of /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/bin/AssignGenes.py to 755 changing mode of /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/bin/BuildTrees.py to 755 changing mode of /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/bin/AlignRecords.py to 755 changing mode of /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/bin/DefineClones.py to 755 changing mode of /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/bin/ParseDb.py to 755 changing mode of /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/bin/CreateGermlines.py to 755 changing mode of /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/bin/ConvertDb.py to 755 changing mode of /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/bin/MakeDb.py to 755 dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild debian/rules override_dh_installman make[1]: Entering directory '/build/reproducible-path/changeo-1.3.0' # Trick to avoid manpage to assume files with extension .py is a language dh_installman --language=C make[1]: Leaving directory '/build/reproducible-path/changeo-1.3.0' dh_python3 -O--buildsystem=pybuild I: dh_python3 tools:114: replacing shebang in debian/changeo/usr/bin/AssignGenes.py I: dh_python3 tools:114: replacing shebang in debian/changeo/usr/bin/BuildTrees.py I: dh_python3 tools:114: replacing shebang in debian/changeo/usr/bin/AlignRecords.py I: dh_python3 tools:114: replacing shebang in debian/changeo/usr/bin/DefineClones.py I: dh_python3 tools:114: replacing shebang in debian/changeo/usr/bin/ParseDb.py I: dh_python3 tools:114: replacing shebang in debian/changeo/usr/bin/CreateGermlines.py I: dh_python3 tools:114: replacing shebang in debian/changeo/usr/bin/ConvertDb.py I: dh_python3 tools:114: replacing shebang in debian/changeo/usr/bin/MakeDb.py dh_installsystemduser -O--buildsystem=pybuild dh_lintian -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'changeo' in '../changeo_1.3.0-3_all.deb'. dpkg-genbuildinfo --build=binary -O../changeo_1.3.0-3_amd64.buildinfo dpkg-genchanges --build=binary -O../changeo_1.3.0-3_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-source: info: using options from changeo-1.3.0/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/1312152/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/1312152/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1312152 and its subdirectories I: Current time: Sun Oct 18 18:33:52 +14 2026 I: pbuilder-time-stamp: 1792298032 + false + set +x Sun Oct 18 04:33:52 UTC 2026 I: Signing ./b2/changeo_1.3.0-3_amd64.buildinfo as changeo_1.3.0-3_amd64.buildinfo.asc Sun Oct 18 04:33:52 UTC 2026 I: Signed ./b2/changeo_1.3.0-3_amd64.buildinfo as ./b2/changeo_1.3.0-3_amd64.buildinfo.asc Sun Oct 18 04:33:52 UTC 2026 - build #2 for changeo/forky/amd64 on ionos15-amd64 done. Starting cleanup. All cleanup done. Sun Oct 18 04:33:52 UTC 2026 - reproducible_build.sh stopped running as /tmp/jenkins-script-5vXez6Ek, removing. /srv/reproducible-results/rbuild-debian/r-b-build.bIMVg8g0: total 60 drwxrwxr-x 2 jenkins jenkins 4096 Sep 14 22:06 b1 drwxrwxr-x 2 jenkins jenkins 4096 Sep 14 22:10 b2 -rw-rw-r-- 1 jenkins jenkins 2324 Dec 5 2024 changeo_1.3.0-3.dsc -rw------- 1 jenkins jenkins 47348 Sep 14 22:06 rbuildlog.zZDm7gk /srv/reproducible-results/rbuild-debian/r-b-build.bIMVg8g0/b1: total 200 -rw-r--r-- 1 jenkins jenkins 43640 Sep 14 22:06 build.log -rw-r--r-- 1 jenkins jenkins 15296 Sep 14 22:06 changeo_1.3.0-3.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2324 Sep 14 22:06 changeo_1.3.0-3.dsc -rw-r--r-- 1 jenkins jenkins 108280 Sep 14 22:06 changeo_1.3.0-3_all.deb -rw-r--r-- 1 jenkins jenkins 5427 Sep 14 22:06 changeo_1.3.0-3_amd64.buildinfo -rw-rw-r-- 1 jenkins jenkins 6309 Sep 14 22:06 changeo_1.3.0-3_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1140 Sep 14 22:06 changeo_1.3.0-3_amd64.changes -rw-r--r-- 1 jenkins jenkins 1301 Sep 14 22:06 changeo_1.3.0-3_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.bIMVg8g0/b2: total 200 -rw-rw-r-- 1 jenkins jenkins 45573 Sep 14 22:10 build.log -rw-r--r-- 1 jenkins jenkins 15296 Sep 14 22:10 changeo_1.3.0-3.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2324 Sep 14 22:10 changeo_1.3.0-3.dsc -rw-r--r-- 1 jenkins jenkins 108280 Sep 14 22:10 changeo_1.3.0-3_all.deb -rw-rw-r-- 1 jenkins jenkins 5427 Sep 14 22:10 changeo_1.3.0-3_amd64.buildinfo -rw-rw-r-- 1 jenkins jenkins 6309 Sep 14 22:10 changeo_1.3.0-3_amd64.buildinfo.asc -rw-rw-r-- 1 jenkins jenkins 1140 Sep 14 22:10 changeo_1.3.0-3_amd64.changes -rw-rw-r-- 1 jenkins jenkins 1301 Sep 14 22:10 changeo_1.3.0-3_source.changes Sun Sep 14 22:10:54 UTC 2025 I: Deleting $TMPDIR on ionos15-amd64.debian.net. Sun Sep 14 22:10:54 UTC 2025 I: changeo_1.3.0-3_amd64.changes: Format: 1.8 Date: Thu, 05 Dec 2024 17:39:21 +0100 Source: changeo Binary: changeo Architecture: all Version: 1.3.0-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: changeo - Repertoire clonal assignment toolkit (Python 3) Closes: 1085416 Changes: changeo (1.3.0-3) unstable; urgency=medium . * Team upload. * Fix Python3.12 string syntax Closes: #1085416 * Build-Depends: s/dh-python/dh-sequence-python3/ (routine-update) Checksums-Sha1: 167502cd01cc905fd002dc12de1354c952f774fc 108280 changeo_1.3.0-3_all.deb 5008990db7857ae7a163717726b632edc260bed3 5427 changeo_1.3.0-3_amd64.buildinfo Checksums-Sha256: 842453f60ded3d81a48585072a830d030012c8a0d0166bea49a64839cee4b9a3 108280 changeo_1.3.0-3_all.deb 8ea74dff8968b4f9523b17bd31a6a01c1fad053bf371ba604e99cc25276752f4 5427 changeo_1.3.0-3_amd64.buildinfo Files: 51e25a3373dfbb982a79360176178760 108280 science optional changeo_1.3.0-3_all.deb 5e5dc97fe776e7cf5a62520b495fa918 5427 science optional changeo_1.3.0-3_amd64.buildinfo removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/forky/amd64/changeo_1.3.0-3.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/forky/amd64/changeo_1.3.0-3.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/forky/amd64/changeo_1.3.0-3.build1.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/forky/amd64/changeo_1.3.0-3.build2.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/buildinfo/forky/amd64/changeo_1.3.0-3_amd64.buildinfo' removed '/var/lib/jenkins/userContent/reproducible/debian/logdiffs/forky/amd64/changeo_1.3.0-3.diff.gz' Diff of the two buildlogs: -- --- b1/build.log 2025-09-14 22:06:03.356487120 +0000 +++ b2/build.log 2025-09-14 22:10:53.964847493 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sun Sep 14 10:04:38 -12 2025 -I: pbuilder-time-stamp: 1757887478 +I: Current time: Sun Oct 18 18:29:03 +14 2026 +I: pbuilder-time-stamp: 1792297743 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration @@ -27,53 +27,85 @@ dpkg-source: info: applying python3.12-syntax.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/971949/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/1312152/tmp/hooks/D01_modify_environment starting +debug: Running on ionos15-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Oct 18 04:29 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/1312152/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/1312152/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' - DISTRIBUTION='forky' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.3.3(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' + DIRSTACK=() + DISTRIBUTION=forky + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='6507106ece4b43e2bf0310793e75747b' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='971949' - PS1='# ' - PS2='> ' + INVOCATION_ID=75126f1e9ec24d97b9a0e566aa6338fb + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=1312152 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.bIMVg8g0/pbuilderrc_TwuC --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.bIMVg8g0/b1 --logfile b1/build.log changeo_1.3.0-3.dsc' - SUDO_GID='111' - SUDO_HOME='/var/lib/jenkins' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://46.16.76.132:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.bIMVg8g0/pbuilderrc_kpEj --distribution forky --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.bIMVg8g0/b2 --logfile b2/build.log changeo_1.3.0-3.dsc' + SUDO_GID=111 + SUDO_HOME=/var/lib/jenkins + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://213.165.73.152:3128 I: uname -a - Linux ionos11-amd64 6.12.43+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.43-1 (2025-08-27) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.12.43+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.43-1 (2025-08-27) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/971949/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/1312152/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -171,7 +203,7 @@ Get: 54 http://deb.debian.org/debian forky/main amd64 python3-zipp all 3.23.0-1 [11.0 kB] Get: 55 http://deb.debian.org/debian forky/main amd64 python3-setuptools all 78.1.1-0.1 [738 kB] Get: 56 http://deb.debian.org/debian forky/main amd64 python3-jaraco.context all 6.0.1-1 [8276 B] -Fetched 19.2 MB in 0s (111 MB/s) +Fetched 19.2 MB in 12s (1577 kB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19917 files and directories currently installed.) @@ -367,8 +399,8 @@ Setting up tzdata (2025b-5) ... Current default time zone: 'Etc/UTC' -Local time is now: Sun Sep 14 22:05:32 UTC 2025. -Universal Time is now: Sun Sep 14 22:05:32 UTC 2025. +Local time is now: Sun Oct 18 04:32:34 UTC 2026. +Universal Time is now: Sun Oct 18 04:32:34 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20240727.1) ... @@ -422,7 +454,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/changeo-1.3.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../changeo_1.3.0-3_source.changes +I: user script /srv/workspace/pbuilder/1312152/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for forky +I: user script /srv/workspace/pbuilder/1312152/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/changeo-1.3.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../changeo_1.3.0-3_source.changes dpkg-buildpackage: info: source package changeo dpkg-buildpackage: info: source version 1.3.0-3 dpkg-buildpackage: info: source distribution unstable @@ -452,24 +488,24 @@ running build running build_py creating /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo -copying changeo/IO.py -> /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo -copying changeo/__init__.py -> /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo copying changeo/Alignment.py -> /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo copying changeo/Multiprocessing.py -> /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo -copying changeo/Gene.py -> /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo -copying changeo/Defaults.py -> /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo -copying changeo/Applications.py -> /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo -copying changeo/Version.py -> /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo +copying changeo/IO.py -> /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo copying changeo/Commandline.py -> /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo copying changeo/Receptor.py -> /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo copying changeo/Distance.py -> /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo +copying changeo/Version.py -> /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo +copying changeo/Gene.py -> /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo +copying changeo/__init__.py -> /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo +copying changeo/Defaults.py -> /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo +copying changeo/Applications.py -> /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo creating /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo/data copying changeo/data/m1n_compat_dist.tsv -> /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo/data -copying changeo/data/mk_rs5nf_dist.tsv -> /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo/data copying changeo/data/hs1f_compat_dist.tsv -> /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo/data -copying changeo/data/hh_s1f_dist.tsv -> /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo/data copying changeo/data/mk_rs1nf_dist.tsv -> /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo/data copying changeo/data/hh_s5f_dist.tsv -> /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo/data +copying changeo/data/mk_rs5nf_dist.tsv -> /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo/data +copying changeo/data/hh_s1f_dist.tsv -> /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo/data running build_scripts creating build/scripts-3.13 copying and adjusting bin/AlignRecords.py -> build/scripts-3.13 @@ -520,39 +556,39 @@ running install_lib creating /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages creating /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo -copying /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo/IO.py -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo -copying /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo/__init__.py -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo copying /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo/Alignment.py -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo copying /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo/Multiprocessing.py -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo -copying /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo/Gene.py -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo -copying /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo/Defaults.py -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo -copying /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo/Applications.py -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo -copying /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo/Version.py -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo +copying /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo/IO.py -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo +copying /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo/Commandline.py -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo +copying /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo/Receptor.py -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo +copying /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo/Distance.py -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo creating /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo/__pycache__ -copying /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo/__pycache__/Defaults.cpython-313.pyc -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo/__pycache__ -copying /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo/__pycache__/Version.cpython-313.pyc -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo/__pycache__ copying /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo/__pycache__ +copying /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo/__pycache__/Version.cpython-313.pyc -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo/__pycache__ +copying /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo/__pycache__/Defaults.cpython-313.pyc -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo/__pycache__ creating /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo/data copying /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo/data/m1n_compat_dist.tsv -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo/data -copying /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo/data/mk_rs5nf_dist.tsv -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo/data copying /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo/data/hs1f_compat_dist.tsv -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo/data -copying /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo/data/hh_s1f_dist.tsv -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo/data copying /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo/data/mk_rs1nf_dist.tsv -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo/data copying /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo/data/hh_s5f_dist.tsv -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo/data -copying /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo/Commandline.py -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo -copying /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo/Receptor.py -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo -copying /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo/Distance.py -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo -byte-compiling /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo/IO.py to IO.cpython-313.pyc -byte-compiling /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo/__init__.py to __init__.cpython-313.pyc +copying /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo/data/mk_rs5nf_dist.tsv -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo/data +copying /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo/data/hh_s1f_dist.tsv -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo/data +copying /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo/Version.py -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo +copying /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo/Gene.py -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo +copying /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo/__init__.py -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo +copying /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo/Defaults.py -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo +copying /build/reproducible-path/changeo-1.3.0/.pybuild/cpython3_3.13_changeo/build/changeo/Applications.py -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo byte-compiling /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo/Alignment.py to Alignment.cpython-313.pyc byte-compiling /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo/Multiprocessing.py to Multiprocessing.cpython-313.pyc -byte-compiling /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo/Gene.py to Gene.cpython-313.pyc -byte-compiling /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo/Defaults.py to Defaults.cpython-313.pyc -byte-compiling /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo/Applications.py to Applications.cpython-313.pyc -byte-compiling /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo/Version.py to Version.cpython-313.pyc +byte-compiling /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo/IO.py to IO.cpython-313.pyc byte-compiling /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo/Commandline.py to Commandline.cpython-313.pyc byte-compiling /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo/Receptor.py to Receptor.cpython-313.pyc byte-compiling /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo/Distance.py to Distance.cpython-313.pyc +byte-compiling /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo/Version.py to Version.cpython-313.pyc +byte-compiling /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo/Gene.py to Gene.cpython-313.pyc +byte-compiling /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo/Defaults.py to Defaults.cpython-313.pyc +byte-compiling /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/lib/python3.13/dist-packages/changeo/Applications.py to Applications.cpython-313.pyc running install_egg_info running egg_info creating changeo.egg-info @@ -569,22 +605,22 @@ Skipping SOURCES.txt running install_scripts creating /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/bin -copying build/scripts-3.13/AlignRecords.py -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/bin -copying build/scripts-3.13/ConvertDb.py -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/bin -copying build/scripts-3.13/CreateGermlines.py -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/bin +copying build/scripts-3.13/AssignGenes.py -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/bin copying build/scripts-3.13/BuildTrees.py -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/bin +copying build/scripts-3.13/AlignRecords.py -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/bin +copying build/scripts-3.13/DefineClones.py -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/bin copying build/scripts-3.13/ParseDb.py -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/bin -copying build/scripts-3.13/AssignGenes.py -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/bin +copying build/scripts-3.13/CreateGermlines.py -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/bin +copying build/scripts-3.13/ConvertDb.py -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/bin copying build/scripts-3.13/MakeDb.py -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/bin -copying build/scripts-3.13/DefineClones.py -> /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/bin -changing mode of /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/bin/AlignRecords.py to 755 -changing mode of /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/bin/ConvertDb.py to 755 -changing mode of /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/bin/CreateGermlines.py to 755 +changing mode of /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/bin/AssignGenes.py to 755 changing mode of /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/bin/BuildTrees.py to 755 +changing mode of /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/bin/AlignRecords.py to 755 +changing mode of /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/bin/DefineClones.py to 755 changing mode of /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/bin/ParseDb.py to 755 -changing mode of /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/bin/AssignGenes.py to 755 +changing mode of /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/bin/CreateGermlines.py to 755 +changing mode of /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/bin/ConvertDb.py to 755 changing mode of /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/bin/MakeDb.py to 755 -changing mode of /build/reproducible-path/changeo-1.3.0/debian/changeo/usr/bin/DefineClones.py to 755 dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild debian/rules override_dh_installman @@ -593,14 +629,14 @@ dh_installman --language=C make[1]: Leaving directory '/build/reproducible-path/changeo-1.3.0' dh_python3 -O--buildsystem=pybuild -I: dh_python3 tools:114: replacing shebang in debian/changeo/usr/bin/AlignRecords.py -I: dh_python3 tools:114: replacing shebang in debian/changeo/usr/bin/ConvertDb.py -I: dh_python3 tools:114: replacing shebang in debian/changeo/usr/bin/CreateGermlines.py +I: dh_python3 tools:114: replacing shebang in debian/changeo/usr/bin/AssignGenes.py I: dh_python3 tools:114: replacing shebang in debian/changeo/usr/bin/BuildTrees.py +I: dh_python3 tools:114: replacing shebang in debian/changeo/usr/bin/AlignRecords.py +I: dh_python3 tools:114: replacing shebang in debian/changeo/usr/bin/DefineClones.py I: dh_python3 tools:114: replacing shebang in debian/changeo/usr/bin/ParseDb.py -I: dh_python3 tools:114: replacing shebang in debian/changeo/usr/bin/AssignGenes.py +I: dh_python3 tools:114: replacing shebang in debian/changeo/usr/bin/CreateGermlines.py +I: dh_python3 tools:114: replacing shebang in debian/changeo/usr/bin/ConvertDb.py I: dh_python3 tools:114: replacing shebang in debian/changeo/usr/bin/MakeDb.py -I: dh_python3 tools:114: replacing shebang in debian/changeo/usr/bin/DefineClones.py dh_installsystemduser -O--buildsystem=pybuild dh_lintian -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild @@ -622,12 +658,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/1312152/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/1312152/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/971949 and its subdirectories -I: Current time: Sun Sep 14 10:06:03 -12 2025 -I: pbuilder-time-stamp: 1757887563 +I: removing directory /srv/workspace/pbuilder/1312152 and its subdirectories +I: Current time: Sun Oct 18 18:33:52 +14 2026 +I: pbuilder-time-stamp: 1792298032 Compressing the 2nd log... /var/lib/jenkins/userContent/reproducible/debian/logdiffs/forky/amd64/changeo_1.3.0-3.diff: 83.9% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/forky/amd64/changeo_1.3.0-3.diff.gz b2/build.log: 81.8% -- replaced with stdout Compressing the 1st log... b1/build.log: 82.4% -- replaced with stdout Sun Sep 14 22:10:55 UTC 2025 I: diffoscope 306 will be used to compare the two builds: ++ date -u +%s + DIFFOSCOPE_STAMP=/var/log/reproducible-builds/diffoscope_stamp_changeo_forky_amd64_1757887855 + touch /var/log/reproducible-builds/diffoscope_stamp_changeo_forky_amd64_1757887855 + RESULT=0 + systemd-run '--description=diffoscope on changeo/1.3.0-3 in forky/amd64' --slice=rb-build-diffoscope.slice -u rb-diffoscope-amd64_7-72323 '--property=SuccessExitStatus=1 124' --user --send-sighup --pipe --wait -E TMPDIR timeout 155m nice schroot --directory /srv/reproducible-results/rbuild-debian/r-b-build.bIMVg8g0 --run-session -c jenkins-reproducible-forky-diffoscope-aeeb649b-40b1-4e87-8e25-c13b89b18c81 -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian/r-b-build.bIMVg8g0/dbd-tmp-yP1sSY5 ; timeout 150m diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.bIMVg8g0/changeo_1.3.0-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.bIMVg8g0/changeo_1.3.0-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.bIMVg8g0/changeo_1.3.0-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.bIMVg8g0/b1/changeo_1.3.0-3_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.bIMVg8g0/b2/changeo_1.3.0-3_amd64.changes' + false + set +x Running as unit: rb-diffoscope-amd64_7-72323.service; invocation ID: d40e19ce579c4b13a650689ef30a876a # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.bIMVg8g0/changeo_1.3.0-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.bIMVg8g0/changeo_1.3.0-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.bIMVg8g0/changeo_1.3.0-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.bIMVg8g0/b1/changeo_1.3.0-3_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.bIMVg8g0/b2/changeo_1.3.0-3_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited, status=0/SUCCESS Service runtime: 212ms CPU time consumed: 169ms Memory peak: 17.4M (swap: 0B) _ ___| |__ __ _ _ __ __ _ ___ ___ / __| '_ \ / _` | '_ \ / _` |/ _ \/ _ \ | (__| | | | (_| | | | | (_| | __/ (_) | \___|_| |_|\__,_|_| |_|\__, |\___|\___/ |___/ Sun Sep 14 22:10:55 UTC 2025 I: diffoscope 306 found no differences in the changes files, and a .buildinfo file also exists. Sun Sep 14 22:10:55 UTC 2025 I: changeo from forky built successfully and reproducibly on amd64. INSERT 0 1 INSERT 0 1 DELETE 1 [2025-09-14 22:10:55] INFO: Starting at 2025-09-14 22:10:55.935250 [2025-09-14 22:10:56] INFO: Generating the pages of 1 package(s) [2025-09-14 22:10:56] CRITICAL: https://tests.reproducible-builds.org/debian/forky/amd64/changeo didn't produce a buildlog, even though it has been built. [2025-09-14 22:10:56] CRITICAL: https://tests.reproducible-builds.org/debian/forky/arm64/changeo didn't produce a buildlog, even though it has been built. [2025-09-14 22:10:56] INFO: Finished at 2025-09-14 22:10:56.192182, took: 0:00:00.256935 Sun Sep 14 22:10:56 UTC 2025 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/forky/amd64/changeo.html Sun Sep 14 22:10:56 UTC 2025 I: Removing signed changeo_1.3.0-3_amd64.buildinfo.asc files: removed './b1/changeo_1.3.0-3_amd64.buildinfo.asc' removed './b2/changeo_1.3.0-3_amd64.buildinfo.asc' 1757887856 amd64 forky changeo Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/forky/amd64/changeo_1.3.0-3.rbuild.log: 79.0% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/forky/amd64/changeo_1.3.0-3.rbuild.log.gz [2025-09-14 22:10:56] INFO: Starting at 2025-09-14 22:10:56.517729 [2025-09-14 22:10:56] INFO: Generating the pages of 1 package(s) [2025-09-14 22:10:56] CRITICAL: https://tests.reproducible-builds.org/debian/forky/arm64/changeo didn't produce a buildlog, even though it has been built. [2025-09-14 22:10:56] INFO: Finished at 2025-09-14 22:10:56.763091, took: 0:00:00.245365 All cleanup done. Sun Sep 14 22:10:56 UTC 2025 - total duration: 0h 6m 31s. Sun Sep 14 22:10:56 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-OoIX9446, removing. Finished with result: success Main processes terminated with: code=exited, status=0/SUCCESS Service runtime: 6min 32.436s CPU time consumed: 3.060s Memory peak: 38M (swap: 0B)