Running as unit: rb-build-amd64_7-77426.service; invocation ID: 43d11c94268a473490af22cc931d7b19 ==================================================================================== Fri Oct 31 03:44:39 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_amd64_7) on jenkins, called using "ionos11-amd64 ionos15-amd64" as arguments. Fri Oct 31 03:44:39 UTC 2025 - actually running "reproducible_build.sh" (md5sum cc591790ab2c8e13f5e554202b95c89c) as "/tmp/jenkins-script-01G0fe7a" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Fri Oct 31 03:44:39 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos11-amd64.debian.net is marked as down. Fri Oct 31 03:44:39 UTC 2025 - checking via ssh if ionos11-amd64.debian.net is up. removed '/tmp/read-only-fs-test-pMS1J5' Fri Oct 31 03:44:40 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos15-amd64.debian.net is marked as down. Fri Oct 31 03:44:40 UTC 2025 - checking via ssh if ionos15-amd64.debian.net is up. removed '/tmp/read-only-fs-test-LIiAb7' ok, let's check if r-bioc-keggrest is building anywhere yet… ok, r-bioc-keggrest is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of r-bioc-keggrest in forky on amd64 on jenkins now. 1st build will be done on ionos11-amd64.debian.net. 2nd build will be done on ionos15-amd64.debian.net. ============================================================================= Fri Oct 31 03:44:50 UTC 2025 I: starting to build r-bioc-keggrest/forky/amd64 on jenkins on '2025-10-31 03:44' Fri Oct 31 03:44:50 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_7/77426/console.log 1761882290 amd64 forky r-bioc-keggrest Fri Oct 31 03:44:50 UTC 2025 I: Downloading source for forky/r-bioc-keggrest=1.46.0+dfsg-3 --2025-10-31 03:44:50-- http://deb.debian.org/debian/pool/main/r/r-bioc-keggrest/r-bioc-keggrest_1.46.0%2bdfsg-3.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2156 (2.1K) [text/prs.lines.tag] Saving to: ‘r-bioc-keggrest_1.46.0+dfsg-3.dsc’ 0K .. 100% 262M=0s 2025-10-31 03:44:50 (262 MB/s) - ‘r-bioc-keggrest_1.46.0+dfsg-3.dsc’ saved [2156/2156] --2025-10-31 03:44:50-- http://deb.debian.org/debian/pool/main/r/r-bioc-keggrest/r-bioc-keggrest_1.46.0%2bdfsg-3.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2156 (2.1K) [text/prs.lines.tag] Saving to: ‘r-bioc-keggrest_1.46.0+dfsg-3.dsc’ 0K .. 100% 262M=0s 2025-10-31 03:44:50 (262 MB/s) - ‘r-bioc-keggrest_1.46.0+dfsg-3.dsc’ saved [2156/2156] Fri Oct 31 03:44:50 UTC 2025 I: r-bioc-keggrest_1.46.0+dfsg-3.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: r-bioc-keggrest Binary: r-bioc-keggrest Architecture: all Version: 1.46.0+dfsg-3 Maintainer: Debian R Packages Maintainers Uploaders: Andreas Tille Homepage: https://bioconductor.org/packages/KEGGREST/ Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/r-pkg-team/r-bioc-keggrest Vcs-Git: https://salsa.debian.org/r-pkg-team/r-bioc-keggrest.git Testsuite: autopkgtest-pkg-r Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-cran-httr, r-cran-png, r-bioc-biostrings Package-List: r-bioc-keggrest deb gnu-r optional arch=all Checksums-Sha1: 17fa9ccda081ba57ee7e056eda5effeae78a2d67 16372 r-bioc-keggrest_1.46.0+dfsg.orig.tar.xz a63d9536425988dc3c7dea106deb3cf1ba4bda0a 6596 r-bioc-keggrest_1.46.0+dfsg-3.debian.tar.xz Checksums-Sha256: 480fe4cde6b1990837c3c95593fa4ef801bfed4d351faa6c61a6d35379aff3aa 16372 r-bioc-keggrest_1.46.0+dfsg.orig.tar.xz 36d1beaa8e486008c8686e3361bf7d31d71aee11159454f4061c44e1cd2d1f2c 6596 r-bioc-keggrest_1.46.0+dfsg-3.debian.tar.xz Files: 914bf6b9b5b1fb0f4eef820423c9816c 16372 r-bioc-keggrest_1.46.0+dfsg.orig.tar.xz 05833ac76a71c23b8798d9185c1f0235 6596 r-bioc-keggrest_1.46.0+dfsg-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJMBAEBCgA2FiEEZ8sxEAXE7b4yF1MI3uUNDVZ+omYFAmgTSOUYHHJlYmVjY2Ff cGFsbWVyQHpvaG8uY29tAAoJEN7lDQ1WfqJmaEYQALbfqy42WGm8yzOf9R0sViN4 JQ62zdCAhmxtcqj7BVp6Uz+2eY9BRvhAHDYm/phYs9k68nQRmpWQc+klhWEzjun9 6W1iGq6YXB8l6YEGk+ebEvw+fqnhObgCo0/h/GQtLRvqrdd7EYZBSp9QNYeZjagF Pw36XqCCgin6FebphFu+7vNQ4jL0VpBaL1C5TkAf99Jjgf3YCEKCn2g6K0fA2EB0 /tsloRJX4p+CuFJsyjh3VWjPKTQf+IZ1JK6c3YyZOBLcaXxUajnYDTWjlJAVdQLz mistyAlvxxhrAoZ3Q0hJsQKoJ2hmlQ3J45/qefBQb/Pi1h/hIddbbU3xdks59yCq tLHSlBNOcXNOwLeSIRJeOTf6Grw2ImA2o8EZ/VGhgFcvhXuV4iDQrP3FY9pVnWcz Vkee4koRZ8UhpKnQJO4L5+vaLwBPmY7PggxQ4K8QthLLXKpUYhHILFzDv8YW4MKz O8ptnZ/uA5TosphmIKRt7xwQVimGm2MS8ifKekZmM5V9OzW7YRGd9gXkWyRUwODO MuHlkjGC4kbr8b21EQ5s/t9EsIwds7znVYgdbQhOWXMogaRVAKrwfRdnyJNb69lr CFZEx9AiPPV+ZESA3tTaJTIHM+LtxWQT1y2ciWMrwh5PuxOiQ+rIc8huFB0BVVOa 9zn2rsTYJ7Jo6Wau8UCg =5XT1 -----END PGP SIGNATURE----- Fri Oct 31 03:44:50 UTC 2025 I: Checking whether the package is not for us Fri Oct 31 03:44:50 UTC 2025 I: Starting 1st build on remote node ionos11-amd64.debian.net. Fri Oct 31 03:44:50 UTC 2025 I: Preparing to do remote build '1' on ionos11-amd64.debian.net. Fri Oct 31 03:44:50 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos11-amd64.debian.net is marked as down. Fri Oct 31 03:44:50 UTC 2025 - checking via ssh if ionos11-amd64.debian.net is up. removed '/tmp/read-only-fs-test-XmGdme' ==================================================================================== Fri Oct 31 03:44:51 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos11-amd64, called using "1 r-bioc-keggrest forky /srv/reproducible-results/rbuild-debian/r-b-build.IQgZXEkR 1.46.0+dfsg-3" as arguments. Fri Oct 31 03:44:51 UTC 2025 - actually running "reproducible_build.sh" (md5sum cc591790ab2c8e13f5e554202b95c89c) as "/tmp/jenkins-script-l7I835II" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Fri Oct 31 03:44:51 UTC 2025 I: Downloading source for forky/r-bioc-keggrest=1.46.0+dfsg-3 Reading package lists... NOTICE: 'r-bioc-keggrest' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/r-pkg-team/r-bioc-keggrest.git Please use: git clone https://salsa.debian.org/r-pkg-team/r-bioc-keggrest.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 25.1 kB of source archives. Get:1 http://deb.debian.org/debian forky/main r-bioc-keggrest 1.46.0+dfsg-3 (dsc) [2156 B] Get:2 http://deb.debian.org/debian forky/main r-bioc-keggrest 1.46.0+dfsg-3 (tar) [16.4 kB] Get:3 http://deb.debian.org/debian forky/main r-bioc-keggrest 1.46.0+dfsg-3 (diff) [6596 B] Fetched 25.1 kB in 0s (1281 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'r-bioc-keggrest' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/r-pkg-team/r-bioc-keggrest.git Please use: git clone https://salsa.debian.org/r-pkg-team/r-bioc-keggrest.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 25.1 kB of source archives. Get:1 http://deb.debian.org/debian forky/main r-bioc-keggrest 1.46.0+dfsg-3 (dsc) [2156 B] Get:2 http://deb.debian.org/debian forky/main r-bioc-keggrest 1.46.0+dfsg-3 (tar) [16.4 kB] Get:3 http://deb.debian.org/debian forky/main r-bioc-keggrest 1.46.0+dfsg-3 (diff) [6596 B] Fetched 25.1 kB in 0s (1281 kB/s) Download complete and in download only mode ============================================================================= Building r-bioc-keggrest in forky on amd64 on ionos11-amd64 now. Date: Fri Oct 31 03:44:51 UTC 2025 Date UTC: Fri Oct 31 03:44:51 UTC 2025 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Thu Oct 30 15:44:51 -12 2025 I: pbuilder-time-stamp: 1761882291 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [r-bioc-keggrest_1.46.0+dfsg-3.dsc] I: copying [./r-bioc-keggrest_1.46.0+dfsg.orig.tar.xz] I: copying [./r-bioc-keggrest_1.46.0+dfsg-3.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./r-bioc-keggrest_1.46.0+dfsg-3.dsc: no acceptable signature found dpkg-source: info: extracting r-bioc-keggrest in r-bioc-keggrest-1.46.0+dfsg dpkg-source: info: unpacking r-bioc-keggrest_1.46.0+dfsg.orig.tar.xz dpkg-source: info: unpacking r-bioc-keggrest_1.46.0+dfsg-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 1104334.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1814357/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' DISTRIBUTION='forky' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='b808cec69a5a471dbcb8cbed7bc1a656' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1814357' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.IQgZXEkR/pbuilderrc_whAG --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.IQgZXEkR/b1 --logfile b1/build.log r-bioc-keggrest_1.46.0+dfsg-3.dsc' SUDO_GID='111' SUDO_HOME='/var/lib/jenkins' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos11-amd64 6.12.48+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.48-1 (2025-09-20) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1814357/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-cran-httr, r-cran-png, r-bioc-biostrings dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19869 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-r; however: Package dh-r is not installed. pbuilder-satisfydepends-dummy depends on r-base-dev; however: Package r-base-dev is not installed. pbuilder-satisfydepends-dummy depends on r-cran-httr; however: Package r-cran-httr is not installed. pbuilder-satisfydepends-dummy depends on r-cran-png; however: Package r-cran-png is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-biostrings; however: Package r-bioc-biostrings is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} dctrl-tools{a} debhelper{a} dh-autoreconf{a} dh-r{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} gettext{a} gettext-base{a} gfortran{a} gfortran-15{a} gfortran-15-x86-64-linux-gnu{a} gfortran-x86-64-linux-gnu{a} groff-base{a} icu-devtools{a} intltool-debian{a} libalgorithm-c3-perl{a} libarchive-zip-perl{a} libb-hooks-endofscope-perl{a} libb-hooks-op-check-perl{a} libblas-dev{a} libblas3{a} libbrotli1{a} libbz2-dev{a} libcairo2{a} libclass-c3-perl{a} libclass-load-perl{a} libclass-load-xs-perl{a} libclone-perl{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4t64{a} libdata-optlist-perl{a} libdatrie1{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libdevel-callchecker-perl{a} libdevel-globaldestruction-perl{a} libdevel-overloadinfo-perl{a} libdevel-stacktrace-perl{a} libdist-checkconflicts-perl{a} libdynaloader-functions-perl{a} libelf1t64{a} libencode-locale-perl{a} libeval-closure-perl{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran-15-dev{a} libgfortran5{a} libglib2.0-0t64{a} libgnutls30t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhttp-date-perl{a} libhttp-message-perl{a} libice6{a} libicu-dev{a} libicu76{a} libidn2-0{a} libio-html-perl{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} libldap2{a} liblerc4{a} liblwp-mediatypes-perl{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libmodule-implementation-perl{a} libmodule-runtime-conflicts-perl{a} libmodule-runtime-perl{a} libmoose-perl{a} libmro-compat-perl{a} libnamespace-clean-perl{a} libncurses-dev{a} libncurses6{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libngtcp2-crypto-ossl0{a} libp11-kit0{a} libpackage-deprecationmanager-perl{a} libpackage-stash-perl{a} libpackage-stash-xs-perl{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper2{a} libparams-classify-perl{a} libparams-util-perl{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpipeline1{a} libpixman-1-0{a} libpkgconf3{a} libpng-dev{a} libpng16-16t64{a} libproc2-0{a} libpsl5t64{a} libreadline-dev{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libsm6{a} libssh2-1t64{a} libsub-exporter-perl{a} libsub-exporter-progressive-perl{a} libsub-identify-perl{a} libsub-install-perl{a} libsub-name-perl{a} libswitch-perl{a} libtasn1-6{a} libtcl8.6{a} libtext-charwidth-perl{a} libtext-wrapi18n-perl{a} libthai-data{a} libthai0{a} libtiff6{a} libtimedate-perl{a} libtirpc-common{a} libtirpc-dev{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} libunistring5{a} liburi-perl{a} libvariable-magic-perl{a} libwebp7{a} libwww-curl-perl{a} libwww-curl-simple-perl{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2-16{a} libxmuu1{a} libxrender1{a} libxss1{a} libxt6t64{a} libzstd-dev{a} m4{a} man-db{a} openssl{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} r-base-core{a} r-base-dev{a} r-bioc-biocgenerics{a} r-bioc-biostrings{a} r-bioc-genomeinfodb{a} r-bioc-genomeinfodbdata{a} r-bioc-iranges{a} r-bioc-s4vectors{a} r-bioc-ucsc.utils{a} r-bioc-xvector{a} r-bioc-zlibbioc{a} r-cran-askpass{a} r-cran-crayon{a} r-cran-curl{a} r-cran-httr{a} r-cran-jsonlite{a} r-cran-mime{a} r-cran-openssl{a} r-cran-png{a} r-cran-r6{a} r-cran-sys{a} readline-common{a} sensible-utils{a} tzdata{a} ucf{a} unzip{a} x11-common{a} xauth{a} xdg-utils{a} zip{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc cme curl devscripts git-buildpackage krb5-locales libarchive-cpio-perl libclass-c3-xs-perl libdevel-lexalias-perl libdevel-partialdump-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libio-compress-brotli-perl libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools libsasl2-modules libx11-protocol-perl linux-sysctl-defaults lynx psmisc publicsuffix r-cran-covr r-cran-digest r-cran-httpuv r-cran-jpeg r-cran-knitr r-cran-lobstr r-cran-mockery r-cran-r.rsp r-cran-readr r-cran-rmarkdown r-cran-rstudioapi r-cran-sf r-cran-sodium r-cran-spelling r-cran-testthat r-cran-vctrs r-cran-withr r-cran-xml2 r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 216 newly installed, 0 to remove and 0 not upgraded. Need to get 150 MB of archives. After unpacking 394 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian forky/main amd64 libexpat1 amd64 2.7.3-1 [112 kB] Get: 2 http://deb.debian.org/debian forky/main amd64 tzdata all 2025b-5 [260 kB] Get: 3 http://deb.debian.org/debian forky/main amd64 libproc2-0 amd64 2:4.0.4-9 [65.6 kB] Get: 4 http://deb.debian.org/debian forky/main amd64 procps amd64 2:4.0.4-9 [882 kB] Get: 5 http://deb.debian.org/debian forky/main amd64 readline-common all 8.3-3 [74.8 kB] Get: 6 http://deb.debian.org/debian forky/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get: 7 http://deb.debian.org/debian forky/main amd64 openssl amd64 3.5.4-1 [1496 kB] Get: 8 http://deb.debian.org/debian forky/main amd64 ca-certificates all 20250419 [162 kB] Get: 9 http://deb.debian.org/debian forky/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 10 http://deb.debian.org/debian forky/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 11 http://deb.debian.org/debian forky/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 12 http://deb.debian.org/debian forky/main amd64 gettext-base amd64 0.23.1-2+b1 [244 kB] Get: 13 http://deb.debian.org/debian forky/main amd64 libuchardet0 amd64 0.0.8-2 [68.5 kB] Get: 14 http://deb.debian.org/debian forky/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 15 http://deb.debian.org/debian forky/main amd64 bsdextrautils amd64 2.41.2-4 [98.5 kB] Get: 16 http://deb.debian.org/debian forky/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 17 http://deb.debian.org/debian forky/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 18 http://deb.debian.org/debian forky/main amd64 libtext-charwidth-perl amd64 0.04-11+b4 [9476 B] Get: 19 http://deb.debian.org/debian forky/main amd64 libtext-wrapi18n-perl all 0.06-10 [8808 B] Get: 20 http://deb.debian.org/debian forky/main amd64 ucf all 3.0052 [43.3 kB] Get: 21 http://deb.debian.org/debian forky/main amd64 m4 amd64 1.4.20-2 [325 kB] Get: 22 http://deb.debian.org/debian forky/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 23 http://deb.debian.org/debian forky/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 24 http://deb.debian.org/debian forky/main amd64 automake all 1:1.18.1-2 [877 kB] Get: 25 http://deb.debian.org/debian forky/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 26 http://deb.debian.org/debian forky/main amd64 dctrl-tools amd64 2.24-3+b1 [104 kB] Get: 27 http://deb.debian.org/debian forky/main amd64 libdebhelper-perl all 13.28 [92.4 kB] Get: 28 http://deb.debian.org/debian forky/main amd64 libtool all 2.5.4-7 [540 kB] Get: 29 http://deb.debian.org/debian forky/main amd64 dh-autoreconf all 21 [12.2 kB] Get: 30 http://deb.debian.org/debian forky/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 31 http://deb.debian.org/debian forky/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 32 http://deb.debian.org/debian forky/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 33 http://deb.debian.org/debian forky/main amd64 libelf1t64 amd64 0.193-3 [192 kB] Get: 34 http://deb.debian.org/debian forky/main amd64 dwz amd64 0.16-2 [108 kB] Get: 35 http://deb.debian.org/debian forky/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 36 http://deb.debian.org/debian forky/main amd64 libxml2-16 amd64 2.14.6+dfsg-0.1 [651 kB] Get: 37 http://deb.debian.org/debian forky/main amd64 gettext amd64 0.23.1-2+b1 [1680 kB] Get: 38 http://deb.debian.org/debian forky/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 39 http://deb.debian.org/debian forky/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 40 http://deb.debian.org/debian forky/main amd64 debhelper all 13.28 [941 kB] Get: 41 http://deb.debian.org/debian forky/main amd64 zip amd64 3.0-15 [235 kB] Get: 42 http://deb.debian.org/debian forky/main amd64 unzip amd64 6.0-29 [173 kB] Get: 43 http://deb.debian.org/debian forky/main amd64 libpaper2 amd64 2.2.5-0.3+b2 [16.7 kB] Get: 44 http://deb.debian.org/debian forky/main amd64 libpaper-utils amd64 2.2.5-0.3+b2 [16.5 kB] Get: 45 http://deb.debian.org/debian forky/main amd64 xdg-utils all 1.2.1-2 [75.8 kB] Get: 46 http://deb.debian.org/debian forky/main amd64 libblas3 amd64 3.12.1-7 [215 kB] Get: 47 http://deb.debian.org/debian forky/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get: 48 http://deb.debian.org/debian forky/main amd64 libpng16-16t64 amd64 1.6.50-1 [282 kB] Get: 49 http://deb.debian.org/debian forky/main amd64 libfreetype6 amd64 2.13.3+dfsg-1 [452 kB] Get: 50 http://deb.debian.org/debian forky/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 51 http://deb.debian.org/debian forky/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 52 http://deb.debian.org/debian forky/main amd64 fontconfig-config amd64 2.15.0-2.4 [318 kB] Get: 53 http://deb.debian.org/debian forky/main amd64 libfontconfig1 amd64 2.15.0-2.4 [401 kB] Get: 54 http://deb.debian.org/debian forky/main amd64 libpixman-1-0 amd64 0.46.4-1 [259 kB] Get: 55 http://deb.debian.org/debian forky/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB] Get: 56 http://deb.debian.org/debian forky/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB] Get: 57 http://deb.debian.org/debian forky/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB] Get: 58 http://deb.debian.org/debian forky/main amd64 libx11-data all 2:1.8.12-1 [343 kB] Get: 59 http://deb.debian.org/debian forky/main amd64 libx11-6 amd64 2:1.8.12-1 [815 kB] Get: 60 http://deb.debian.org/debian forky/main amd64 libxcb-render0 amd64 1.17.0-2+b1 [115 kB] Get: 61 http://deb.debian.org/debian forky/main amd64 libxcb-shm0 amd64 1.17.0-2+b1 [105 kB] Get: 62 http://deb.debian.org/debian forky/main amd64 libxext6 amd64 2:1.3.4-1+b3 [50.4 kB] Get: 63 http://deb.debian.org/debian forky/main amd64 libxrender1 amd64 1:0.9.12-1 [27.9 kB] Get: 64 http://deb.debian.org/debian forky/main amd64 libcairo2 amd64 1.18.4-1+b1 [538 kB] Get: 65 http://deb.debian.org/debian forky/main amd64 libnghttp3-9 amd64 1.12.0-1 [68.4 kB] Get: 66 http://deb.debian.org/debian forky/main amd64 libngtcp2-16 amd64 1.16.0-1 [136 kB] Get: 67 http://deb.debian.org/debian forky/main amd64 libkrb5support0 amd64 1.21.3-5 [33.0 kB] Get: 68 http://deb.debian.org/debian forky/main amd64 libcom-err2 amd64 1.47.2-3+b3 [25.0 kB] Get: 69 http://deb.debian.org/debian forky/main amd64 libk5crypto3 amd64 1.21.3-5 [81.5 kB] Get: 70 http://deb.debian.org/debian forky/main amd64 libkeyutils1 amd64 1.6.3-6 [9456 B] Get: 71 http://deb.debian.org/debian forky/main amd64 libkrb5-3 amd64 1.21.3-5 [326 kB] Get: 72 http://deb.debian.org/debian forky/main amd64 libgssapi-krb5-2 amd64 1.21.3-5 [138 kB] Get: 73 http://deb.debian.org/debian forky/main amd64 libidn2-0 amd64 2.3.8-4 [110 kB] Get: 74 http://deb.debian.org/debian forky/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-10 [19.8 kB] Get: 75 http://deb.debian.org/debian forky/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-10 [57.8 kB] Get: 76 http://deb.debian.org/debian forky/main amd64 libldap2 amd64 2.6.10+dfsg-1 [194 kB] Get: 77 http://deb.debian.org/debian forky/main amd64 libnghttp2-14 amd64 1.64.0-1.1+b1 [76.2 kB] Get: 78 http://deb.debian.org/debian forky/main amd64 libngtcp2-crypto-ossl0 amd64 1.16.0-1 [27.5 kB] Get: 79 http://deb.debian.org/debian forky/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 80 http://deb.debian.org/debian forky/main amd64 libffi8 amd64 3.5.2-2 [25.5 kB] Get: 81 http://deb.debian.org/debian forky/main amd64 libp11-kit0 amd64 0.25.9-2 [443 kB] Get: 82 http://deb.debian.org/debian forky/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get: 83 http://deb.debian.org/debian forky/main amd64 libgnutls30t64 amd64 3.8.10-3 [1493 kB] Get: 84 http://deb.debian.org/debian forky/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-3 [58.3 kB] Get: 85 http://deb.debian.org/debian forky/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 86 http://deb.debian.org/debian forky/main amd64 libcurl4t64 amd64 8.17.0~rc2-1 [408 kB] Get: 87 http://deb.debian.org/debian forky/main amd64 libdeflate0 amd64 1.23-2 [47.3 kB] Get: 88 http://deb.debian.org/debian forky/main amd64 libglib2.0-0t64 amd64 2.86.1-1 [1546 kB] Get: 89 http://deb.debian.org/debian forky/main amd64 libicu76 amd64 76.1-4 [9722 kB] Get: 90 http://deb.debian.org/debian forky/main amd64 libjpeg62-turbo amd64 1:2.1.5-4 [168 kB] Get: 91 http://deb.debian.org/debian forky/main amd64 libgfortran5 amd64 15.2.0-7 [862 kB] Get: 92 http://deb.debian.org/debian forky/main amd64 liblapack3 amd64 3.12.1-7 [2785 kB] Get: 93 http://deb.debian.org/debian forky/main amd64 fontconfig amd64 2.15.0-2.4 [464 kB] Get: 94 http://deb.debian.org/debian forky/main amd64 libfribidi0 amd64 1.0.16-3 [26.6 kB] Get: 95 http://deb.debian.org/debian forky/main amd64 libgraphite2-3 amd64 1.3.14-11 [76.7 kB] Get: 96 http://deb.debian.org/debian forky/main amd64 libharfbuzz0b amd64 12.1.0-1 [530 kB] Get: 97 http://deb.debian.org/debian forky/main amd64 libthai-data all 0.1.29-2 [168 kB] Get: 98 http://deb.debian.org/debian forky/main amd64 libdatrie1 amd64 0.2.13-4 [38.0 kB] Get: 99 http://deb.debian.org/debian forky/main amd64 libthai0 amd64 0.1.29-2+b1 [49.4 kB] Get: 100 http://deb.debian.org/debian forky/main amd64 libpango-1.0-0 amd64 1.56.3-2 [239 kB] Get: 101 http://deb.debian.org/debian forky/main amd64 libpangoft2-1.0-0 amd64 1.56.3-2 [62.0 kB] Get: 102 http://deb.debian.org/debian forky/main amd64 libpangocairo-1.0-0 amd64 1.56.3-2 [38.1 kB] Get: 103 http://deb.debian.org/debian forky/main amd64 libreadline8t64 amd64 8.3-3 [191 kB] Get: 104 http://deb.debian.org/debian forky/main amd64 libtcl8.6 amd64 8.6.17+dfsg-1 [1041 kB] Get: 105 http://deb.debian.org/debian forky/main amd64 libjbig0 amd64 2.1-6.1+b2 [32.1 kB] Get: 106 http://deb.debian.org/debian forky/main amd64 liblerc4 amd64 4.0.0+ds-5 [183 kB] Get: 107 http://deb.debian.org/debian forky/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [116 kB] Get: 108 http://deb.debian.org/debian forky/main amd64 libwebp7 amd64 1.5.0-0.1 [318 kB] Get: 109 http://deb.debian.org/debian forky/main amd64 libtiff6 amd64 4.7.1-1 [361 kB] Get: 110 http://deb.debian.org/debian forky/main amd64 libtirpc-common all 1.3.6+ds-1 [11.0 kB] Get: 111 http://deb.debian.org/debian forky/main amd64 libtirpc3t64 amd64 1.3.6+ds-1 [83.3 kB] Get: 112 http://deb.debian.org/debian forky/main amd64 libxft2 amd64 2.3.6-1+b4 [54.5 kB] Get: 113 http://deb.debian.org/debian forky/main amd64 x11-common all 1:7.7+26 [217 kB] Get: 114 http://deb.debian.org/debian forky/main amd64 libxss1 amd64 1:1.2.3-1+b3 [17.0 kB] Get: 115 http://deb.debian.org/debian forky/main amd64 libtk8.6 amd64 8.6.17-1 [794 kB] Get: 116 http://deb.debian.org/debian forky/main amd64 libice6 amd64 2:1.1.1-1 [65.4 kB] Get: 117 http://deb.debian.org/debian forky/main amd64 libsm6 amd64 2:1.2.6-1 [37.3 kB] Get: 118 http://deb.debian.org/debian forky/main amd64 libxt6t64 amd64 1:1.2.1-1.3 [208 kB] Get: 119 http://deb.debian.org/debian forky/main amd64 r-base-core amd64 4.5.1-1 [28.7 MB] Get: 120 http://deb.debian.org/debian forky/main amd64 libgfortran-15-dev amd64 15.2.0-7 [886 kB] Get: 121 http://deb.debian.org/debian forky/main amd64 gfortran-15-x86-64-linux-gnu amd64 15.2.0-7 [12.7 MB] Get: 122 http://deb.debian.org/debian forky/main amd64 gfortran-15 amd64 15.2.0-7 [18.0 kB] Get: 123 http://deb.debian.org/debian forky/main amd64 gfortran-x86-64-linux-gnu amd64 4:15.2.0-4 [1276 B] Get: 124 http://deb.debian.org/debian forky/main amd64 gfortran amd64 4:15.2.0-4 [1436 B] Get: 125 http://deb.debian.org/debian forky/main amd64 libblas-dev amd64 3.12.1-7 [229 kB] Get: 126 http://deb.debian.org/debian forky/main amd64 liblapack-dev amd64 3.12.1-7 [5894 kB] Get: 127 http://deb.debian.org/debian forky/main amd64 libncurses6 amd64 6.5+20250216-2 [105 kB] Get: 128 http://deb.debian.org/debian forky/main amd64 libncurses-dev amd64 6.5+20250216-2 [353 kB] Get: 129 http://deb.debian.org/debian forky/main amd64 libreadline-dev amd64 8.3-3 [175 kB] Get: 130 http://deb.debian.org/debian forky/main amd64 libjpeg62-turbo-dev amd64 1:2.1.5-4 [292 kB] Get: 131 http://deb.debian.org/debian forky/main amd64 libjpeg-dev amd64 1:2.1.5-4 [72.2 kB] Get: 132 http://deb.debian.org/debian forky/main amd64 libpcre2-16-0 amd64 10.46-1 [281 kB] Get: 133 http://deb.debian.org/debian forky/main amd64 libpcre2-32-0 amd64 10.46-1 [268 kB] Get: 134 http://deb.debian.org/debian forky/main amd64 libpcre2-posix3 amd64 10.46-1 [63.9 kB] Get: 135 http://deb.debian.org/debian forky/main amd64 libpcre2-dev amd64 10.46-1 [853 kB] Get: 136 http://deb.debian.org/debian forky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Get: 137 http://deb.debian.org/debian forky/main amd64 libpng-dev amd64 1.6.50-1 [366 kB] Get: 138 http://deb.debian.org/debian forky/main amd64 libbz2-dev amd64 1.0.8-6 [31.4 kB] Get: 139 http://deb.debian.org/debian forky/main amd64 liblzma-dev amd64 5.8.1-2 [349 kB] Get: 140 http://deb.debian.org/debian forky/main amd64 icu-devtools amd64 76.1-4 [215 kB] Get: 141 http://deb.debian.org/debian forky/main amd64 libicu-dev amd64 76.1-4 [10.8 MB] Get: 142 http://deb.debian.org/debian forky/main amd64 libxmuu1 amd64 2:1.1.3-3+b4 [21.9 kB] Get: 143 http://deb.debian.org/debian forky/main amd64 xauth amd64 1:1.1.2-1.1 [35.9 kB] Get: 144 http://deb.debian.org/debian forky/main amd64 libpkgconf3 amd64 1.8.1-4 [36.4 kB] Get: 145 http://deb.debian.org/debian forky/main amd64 pkgconf-bin amd64 1.8.1-4 [30.2 kB] Get: 146 http://deb.debian.org/debian forky/main amd64 pkgconf amd64 1.8.1-4 [26.2 kB] Get: 147 http://deb.debian.org/debian forky/main amd64 libtirpc-dev amd64 1.3.6+ds-1 [191 kB] Get: 148 http://deb.debian.org/debian forky/main amd64 libdeflate-dev amd64 1.23-2 [55.9 kB] Get: 149 http://deb.debian.org/debian forky/main amd64 libzstd-dev amd64 1.5.7+dfsg-2 [375 kB] Get: 150 http://deb.debian.org/debian forky/main amd64 r-base-dev all 4.5.1-1 [4360 B] Get: 151 http://deb.debian.org/debian forky/main amd64 libfile-which-perl all 1.27-2 [15.1 kB] Get: 152 http://deb.debian.org/debian forky/main amd64 libswitch-perl all 2.17-3 [20.3 kB] Get: 153 http://deb.debian.org/debian forky/main amd64 libclone-perl amd64 0.47-1+b1 [13.9 kB] Get: 154 http://deb.debian.org/debian forky/main amd64 libencode-locale-perl all 1.05-3 [12.9 kB] Get: 155 http://deb.debian.org/debian forky/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB] Get: 156 http://deb.debian.org/debian forky/main amd64 libhttp-date-perl all 6.06-1 [10.7 kB] Get: 157 http://deb.debian.org/debian forky/main amd64 libio-html-perl all 1.004-3 [16.2 kB] Get: 158 http://deb.debian.org/debian forky/main amd64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get: 159 http://deb.debian.org/debian forky/main amd64 liburi-perl all 5.30-1 [105 kB] Get: 160 http://deb.debian.org/debian forky/main amd64 libhttp-message-perl all 7.01-1 [80.0 kB] Get: 161 http://deb.debian.org/debian forky/main amd64 libparams-util-perl amd64 1.102-3+b1 [24.4 kB] Get: 162 http://deb.debian.org/debian forky/main amd64 libsub-install-perl all 0.929-1 [10.5 kB] Get: 163 http://deb.debian.org/debian forky/main amd64 libdata-optlist-perl all 0.114-1 [10.6 kB] Get: 164 http://deb.debian.org/debian forky/main amd64 libb-hooks-op-check-perl amd64 0.22-3+b2 [10.6 kB] Get: 165 http://deb.debian.org/debian forky/main amd64 libdynaloader-functions-perl all 0.004-2 [12.2 kB] Get: 166 http://deb.debian.org/debian forky/main amd64 libdevel-callchecker-perl amd64 0.009-2 [15.6 kB] Get: 167 http://deb.debian.org/debian forky/main amd64 libparams-classify-perl amd64 0.015-2+b4 [22.5 kB] Get: 168 http://deb.debian.org/debian forky/main amd64 libmodule-runtime-perl all 0.018-1 [17.8 kB] Get: 169 http://deb.debian.org/debian forky/main amd64 libtry-tiny-perl all 0.32-1 [22.9 kB] Get: 170 http://deb.debian.org/debian forky/main amd64 libmodule-implementation-perl all 0.09-2 [12.6 kB] Get: 171 http://deb.debian.org/debian forky/main amd64 libpackage-stash-perl all 0.40-1 [22.0 kB] Get: 172 http://deb.debian.org/debian forky/main amd64 libclass-load-perl all 0.25-2 [15.3 kB] Get: 173 http://deb.debian.org/debian forky/main amd64 libclass-load-xs-perl amd64 0.10-2+b4 [14.2 kB] Get: 174 http://deb.debian.org/debian forky/main amd64 libsub-exporter-progressive-perl all 0.001013-3 [7496 B] Get: 175 http://deb.debian.org/debian forky/main amd64 libdevel-globaldestruction-perl all 0.14-4 [7144 B] Get: 176 http://deb.debian.org/debian forky/main amd64 libalgorithm-c3-perl all 0.11-2 [10.8 kB] Get: 177 http://deb.debian.org/debian forky/main amd64 libclass-c3-perl all 0.35-2 [21.0 kB] Get: 178 http://deb.debian.org/debian forky/main amd64 libmro-compat-perl all 0.15-2 [11.8 kB] Get: 179 http://deb.debian.org/debian forky/main amd64 libdevel-overloadinfo-perl all 0.008-1 [7748 B] Get: 180 http://deb.debian.org/debian forky/main amd64 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB] Get: 181 http://deb.debian.org/debian forky/main amd64 libsub-exporter-perl all 0.990-1 [50.6 kB] Get: 182 http://deb.debian.org/debian forky/main amd64 libeval-closure-perl all 0.14-3 [11.2 kB] Get: 183 http://deb.debian.org/debian forky/main amd64 libdist-checkconflicts-perl all 0.11-2 [10.5 kB] Get: 184 http://deb.debian.org/debian forky/main amd64 libmodule-runtime-conflicts-perl all 0.003-2 [7356 B] Get: 185 http://deb.debian.org/debian forky/main amd64 libpackage-deprecationmanager-perl all 0.18-1 [17.6 kB] Get: 186 http://deb.debian.org/debian forky/main amd64 libpackage-stash-xs-perl amd64 0.30-1+b4 [20.9 kB] Get: 187 http://deb.debian.org/debian forky/main amd64 libmoose-perl amd64 2.4000-1 [767 kB] Get: 188 http://deb.debian.org/debian forky/main amd64 libvariable-magic-perl amd64 0.64-1+b1 [44.9 kB] Get: 189 http://deb.debian.org/debian forky/main amd64 libb-hooks-endofscope-perl all 0.28-2 [17.6 kB] Get: 190 http://deb.debian.org/debian forky/main amd64 libsub-identify-perl amd64 0.14-3+b3 [11.3 kB] Get: 191 http://deb.debian.org/debian forky/main amd64 libsub-name-perl amd64 0.28-1 [12.2 kB] Get: 192 http://deb.debian.org/debian forky/main amd64 libnamespace-clean-perl all 0.27-2 [17.8 kB] Get: 193 http://deb.debian.org/debian forky/main amd64 libngtcp2-crypto-gnutls8 amd64 1.16.0-1 [25.2 kB] Get: 194 http://deb.debian.org/debian forky/main amd64 libcurl3t64-gnutls amd64 8.17.0~rc2-1 [400 kB] Get: 195 http://deb.debian.org/debian forky/main amd64 libwww-curl-perl amd64 4.17-12 [58.4 kB] Get: 196 http://deb.debian.org/debian forky/main amd64 libwww-curl-simple-perl all 0.100191-3 [12.6 kB] Get: 197 http://deb.debian.org/debian forky/main amd64 dh-r all 20250812 [42.6 kB] Get: 198 http://deb.debian.org/debian forky/main amd64 r-bioc-biocgenerics all 0.52.0-2 [627 kB] Get: 199 http://deb.debian.org/debian forky/main amd64 r-bioc-s4vectors amd64 0.44.0+dfsg-2 [2061 kB] Get: 200 http://deb.debian.org/debian forky/main amd64 r-bioc-iranges amd64 2.40.1-3 [2310 kB] Get: 201 http://deb.debian.org/debian forky/main amd64 r-bioc-zlibbioc all 1.52.0+dfsg-2 [9968 B] Get: 202 http://deb.debian.org/debian forky/main amd64 r-bioc-xvector amd64 0.46.0-2 [620 kB] Get: 203 http://deb.debian.org/debian forky/main amd64 r-cran-curl amd64 7.0.0+dfsg-1 [203 kB] Get: 204 http://deb.debian.org/debian forky/main amd64 r-cran-jsonlite amd64 1.9.1+dfsg-1 [445 kB] Get: 205 http://deb.debian.org/debian forky/main amd64 r-cran-mime amd64 0.12-2 [35.6 kB] Get: 206 http://deb.debian.org/debian forky/main amd64 r-cran-sys amd64 3.4.3-1 [44.4 kB] Get: 207 http://deb.debian.org/debian forky/main amd64 r-cran-askpass amd64 1.2.1-1 [24.2 kB] Get: 208 http://deb.debian.org/debian forky/main amd64 r-cran-openssl amd64 2.3.2+dfsg-1 [402 kB] Get: 209 http://deb.debian.org/debian forky/main amd64 r-cran-r6 all 2.6.1-1 [106 kB] Get: 210 http://deb.debian.org/debian forky/main amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] Get: 211 http://deb.debian.org/debian forky/main amd64 r-bioc-ucsc.utils all 1.2.0+ds-2 [77.3 kB] Get: 212 http://deb.debian.org/debian forky/main amd64 r-bioc-genomeinfodbdata all 1.2.13-2 [12.9 MB] Get: 213 http://deb.debian.org/debian forky/main amd64 r-bioc-genomeinfodb all 1.42.3+dfsg-1 [3848 kB] Get: 214 http://deb.debian.org/debian forky/main amd64 r-cran-crayon all 1.5.3-1 [165 kB] Get: 215 http://deb.debian.org/debian forky/main amd64 r-bioc-biostrings amd64 2.74.1+dfsg-2 [13.4 MB] Get: 216 http://deb.debian.org/debian forky/main amd64 r-cran-png amd64 0.1-8-1+b1 [41.5 kB] Fetched 150 MB in 10s (15.4 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19869 files and directories currently installed.) Preparing to unpack .../000-libexpat1_2.7.3-1_amd64.deb ... Unpacking libexpat1:amd64 (2.7.3-1) ... Selecting previously unselected package tzdata. Preparing to unpack .../001-tzdata_2025b-5_all.deb ... Unpacking tzdata (2025b-5) ... Selecting previously unselected package libproc2-0:amd64. 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Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.3-3) ... Selecting previously unselected package libtcl8.6:amd64. Preparing to unpack .../103-libtcl8.6_8.6.17+dfsg-1_amd64.deb ... Unpacking libtcl8.6:amd64 (8.6.17+dfsg-1) ... Selecting previously unselected package libjbig0:amd64. Preparing to unpack .../104-libjbig0_2.1-6.1+b2_amd64.deb ... Unpacking libjbig0:amd64 (2.1-6.1+b2) ... Selecting previously unselected package liblerc4:amd64. 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Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:amd64 (1.3.6+ds-1) ... Selecting previously unselected package libxft2:amd64. Preparing to unpack .../111-libxft2_2.3.6-1+b4_amd64.deb ... Unpacking libxft2:amd64 (2.3.6-1+b4) ... Selecting previously unselected package x11-common. Preparing to unpack .../112-x11-common_1%3a7.7+26_all.deb ... Unpacking x11-common (1:7.7+26) ... Selecting previously unselected package libxss1:amd64. Preparing to unpack .../113-libxss1_1%3a1.2.3-1+b3_amd64.deb ... Unpacking libxss1:amd64 (1:1.2.3-1+b3) ... Selecting previously unselected package libtk8.6:amd64. Preparing to unpack .../114-libtk8.6_8.6.17-1_amd64.deb ... Unpacking libtk8.6:amd64 (8.6.17-1) ... Selecting previously unselected package libice6:amd64. 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Setting up r-cran-askpass (1.2.1-1) ... Setting up r-cran-png (0.1-8-1+b1) ... Setting up r-cran-jsonlite (1.9.1+dfsg-1) ... Setting up r-bioc-s4vectors (0.44.0+dfsg-2) ... Setting up libnamespace-clean-perl (0.27-2) ... Setting up r-bioc-iranges (2.40.1-3) ... Setting up r-cran-openssl (2.3.2+dfsg-1) ... Setting up libwww-curl-simple-perl (0.100191-3) ... Setting up r-cran-httr (1.4.7+dfsg-1) ... Setting up r-bioc-xvector (0.46.0-2) ... Setting up dh-r (20250812) ... Setting up r-bioc-ucsc.utils (1.2.0+ds-2) ... Setting up r-bioc-genomeinfodb (1.42.3+dfsg-1) ... Setting up r-bioc-biostrings (2.74.1+dfsg-2) ... Processing triggers for libc-bin (2.41-12) ... Processing triggers for ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/r-bioc-keggrest-1.46.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../r-bioc-keggrest_1.46.0+dfsg-3_source.changes dpkg-buildpackage: info: source package r-bioc-keggrest dpkg-buildpackage: info: source version 1.46.0+dfsg-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Rebecca N. Palmer dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem R dh_auto_clean -O--buildsystem=R dh_autoreconf_clean -O--buildsystem=R dh_clean -O--buildsystem=R debian/rules binary dh binary --buildsystem R dh_update_autotools_config -O--buildsystem=R dh_autoreconf -O--buildsystem=R dh_auto_configure -O--buildsystem=R dh_auto_build -O--buildsystem=R dh_auto_test -O--buildsystem=R create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=R dh_prep -O--buildsystem=R dh_auto_install --destdir=debian/r-bioc-keggrest/ -O--buildsystem=R I: R Package: KEGGREST Version: 1.46.0 I: Building using R version 4.5.1-1 I: R API version: r-api-4.0 I: Using built-time from d/changelog: Wed, 30 Apr 2025 22:08:26 +0100 mkdir -p /build/reproducible-path/r-bioc-keggrest-1.46.0\+dfsg/debian/r-bioc-keggrest/usr/lib/R/site-library R CMD INSTALL -l /build/reproducible-path/r-bioc-keggrest-1.46.0\+dfsg/debian/r-bioc-keggrest/usr/lib/R/site-library --clean . --built-timestamp="'Wed, 30 Apr 2025 22:08:26 +0100'" * installing *source* package 'KEGGREST' ... ** this is package 'KEGGREST' version '1.46.0' file 'inst/doc/KEGGREST-vignette.html' is missing file 'R/parsers.R' has the wrong MD5 checksum ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading code for methods in class "KEGGFlatFileRecord" was not checked for suspicious field assignments (recommended package 'codetools' not available?) ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (KEGGREST) W: Ignoring specified R dependency: R (>= 3.5.0) I: Using r-cran-runit for Suggests:RUnit I: Using r-bioc-biocgenerics for Suggests:BiocGenerics I: Using r-bioc-biocstyle for Suggests:BiocStyle I: Using r-cran-knitr for Suggests:knitr I: Using r-cran-markdown for Suggests:markdown I: Using r-cran-httr for Imports:httr I: Using r-cran-png for Imports:png I: Using r-bioc-biostrings for Imports:Biostrings I: BioConductor API version: r-api-bioc-3.20 I: Use r-bioc-keggrest as Debian binary package for variables substitution dh_installdocs -O--buildsystem=R dh_installchangelogs -O--buildsystem=R dh_installsystemduser -O--buildsystem=R dh_perl -O--buildsystem=R dh_link -O--buildsystem=R dh_strip_nondeterminism -O--buildsystem=R dh_compress -O--buildsystem=R debian/rules override_dh_fixperms make[1]: Entering directory '/build/reproducible-path/r-bioc-keggrest-1.46.0+dfsg' dh_fixperms find debian -name "*.R" -exec chmod -x \{\} \; make[1]: Leaving directory '/build/reproducible-path/r-bioc-keggrest-1.46.0+dfsg' dh_missing -O--buildsystem=R dh_installdeb -O--buildsystem=R dh_gencontrol -O--buildsystem=R dh_md5sums -O--buildsystem=R dh_builddeb -O--buildsystem=R dpkg-deb: building package 'r-bioc-keggrest' in '../r-bioc-keggrest_1.46.0+dfsg-3_all.deb'. dpkg-genbuildinfo --build=binary -O../r-bioc-keggrest_1.46.0+dfsg-3_amd64.buildinfo dpkg-genchanges --build=binary -O../r-bioc-keggrest_1.46.0+dfsg-3_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1814357 and its subdirectories I: Current time: Thu Oct 30 15:47:05 -12 2025 I: pbuilder-time-stamp: 1761882425 Fri Oct 31 03:47:05 UTC 2025 I: Signing ./b1/r-bioc-keggrest_1.46.0+dfsg-3_amd64.buildinfo as r-bioc-keggrest_1.46.0+dfsg-3_amd64.buildinfo.asc Fri Oct 31 03:47:05 UTC 2025 I: Signed ./b1/r-bioc-keggrest_1.46.0+dfsg-3_amd64.buildinfo as ./b1/r-bioc-keggrest_1.46.0+dfsg-3_amd64.buildinfo.asc Fri Oct 31 03:47:05 UTC 2025 - build #1 for r-bioc-keggrest/forky/amd64 on ionos11-amd64 done. Starting cleanup. All cleanup done. Fri Oct 31 03:47:05 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-l7I835II, removing. /srv/reproducible-results/rbuild-debian/r-b-build.IQgZXEkR: total 16 drwxrwxr-x 2 jenkins jenkins 4096 Oct 31 03:47 b1 drwxrwxr-x 2 jenkins jenkins 4096 Oct 31 03:44 b2 -rw-rw-r-- 1 jenkins jenkins 2156 May 1 2025 r-bioc-keggrest_1.46.0+dfsg-3.dsc -rw------- 1 jenkins jenkins 3339 Oct 31 03:44 rbuildlog.7AujPik /srv/reproducible-results/rbuild-debian/r-b-build.IQgZXEkR/b1: total 316 -rw-r--r-- 1 jenkins jenkins 85408 Oct 31 03:47 build.log -rw-r--r-- 1 jenkins jenkins 6596 Oct 31 03:47 r-bioc-keggrest_1.46.0+dfsg-3.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2156 Oct 31 03:47 r-bioc-keggrest_1.46.0+dfsg-3.dsc -rw-r--r-- 1 jenkins jenkins 191500 Oct 31 03:47 r-bioc-keggrest_1.46.0+dfsg-3_all.deb -rw-r--r-- 1 jenkins jenkins 10421 Oct 31 03:47 r-bioc-keggrest_1.46.0+dfsg-3_amd64.buildinfo -rw-rw-r-- 1 jenkins jenkins 11303 Oct 31 03:47 r-bioc-keggrest_1.46.0+dfsg-3_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1275 Oct 31 03:47 r-bioc-keggrest_1.46.0+dfsg-3_amd64.changes -rw-r--r-- 1 jenkins jenkins 1470 Oct 31 03:47 r-bioc-keggrest_1.46.0+dfsg-3_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.IQgZXEkR/b2: total 0 Fri Oct 31 03:47:05 UTC 2025 I: Deleting $TMPDIR on ionos11-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Oct 30 15:44:51 -12 2025 I: pbuilder-time-stamp: 1761882291 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [r-bioc-keggrest_1.46.0+dfsg-3.dsc] I: copying [./r-bioc-keggrest_1.46.0+dfsg.orig.tar.xz] I: copying [./r-bioc-keggrest_1.46.0+dfsg-3.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./r-bioc-keggrest_1.46.0+dfsg-3.dsc: no acceptable signature found dpkg-source: info: extracting r-bioc-keggrest in r-bioc-keggrest-1.46.0+dfsg dpkg-source: info: unpacking r-bioc-keggrest_1.46.0+dfsg.orig.tar.xz dpkg-source: info: unpacking r-bioc-keggrest_1.46.0+dfsg-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 1104334.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1814357/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' DISTRIBUTION='forky' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='b808cec69a5a471dbcb8cbed7bc1a656' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1814357' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.IQgZXEkR/pbuilderrc_whAG --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.IQgZXEkR/b1 --logfile b1/build.log r-bioc-keggrest_1.46.0+dfsg-3.dsc' SUDO_GID='111' SUDO_HOME='/var/lib/jenkins' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos11-amd64 6.12.48+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.48-1 (2025-09-20) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1814357/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-cran-httr, r-cran-png, r-bioc-biostrings dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19869 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-r; however: Package dh-r is not installed. pbuilder-satisfydepends-dummy depends on r-base-dev; however: Package r-base-dev is not installed. pbuilder-satisfydepends-dummy depends on r-cran-httr; however: Package r-cran-httr is not installed. pbuilder-satisfydepends-dummy depends on r-cran-png; however: Package r-cran-png is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-biostrings; however: Package r-bioc-biostrings is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} dctrl-tools{a} debhelper{a} dh-autoreconf{a} dh-r{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} gettext{a} gettext-base{a} gfortran{a} gfortran-15{a} gfortran-15-x86-64-linux-gnu{a} gfortran-x86-64-linux-gnu{a} groff-base{a} icu-devtools{a} intltool-debian{a} libalgorithm-c3-perl{a} libarchive-zip-perl{a} libb-hooks-endofscope-perl{a} libb-hooks-op-check-perl{a} libblas-dev{a} libblas3{a} libbrotli1{a} libbz2-dev{a} libcairo2{a} libclass-c3-perl{a} libclass-load-perl{a} libclass-load-xs-perl{a} libclone-perl{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4t64{a} libdata-optlist-perl{a} libdatrie1{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libdevel-callchecker-perl{a} libdevel-globaldestruction-perl{a} libdevel-overloadinfo-perl{a} libdevel-stacktrace-perl{a} libdist-checkconflicts-perl{a} libdynaloader-functions-perl{a} libelf1t64{a} libencode-locale-perl{a} libeval-closure-perl{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran-15-dev{a} libgfortran5{a} libglib2.0-0t64{a} libgnutls30t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhttp-date-perl{a} libhttp-message-perl{a} libice6{a} libicu-dev{a} libicu76{a} libidn2-0{a} libio-html-perl{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} libldap2{a} liblerc4{a} liblwp-mediatypes-perl{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libmodule-implementation-perl{a} libmodule-runtime-conflicts-perl{a} libmodule-runtime-perl{a} libmoose-perl{a} libmro-compat-perl{a} libnamespace-clean-perl{a} libncurses-dev{a} libncurses6{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libngtcp2-crypto-ossl0{a} libp11-kit0{a} libpackage-deprecationmanager-perl{a} libpackage-stash-perl{a} libpackage-stash-xs-perl{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper2{a} libparams-classify-perl{a} libparams-util-perl{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpipeline1{a} libpixman-1-0{a} libpkgconf3{a} libpng-dev{a} libpng16-16t64{a} libproc2-0{a} libpsl5t64{a} libreadline-dev{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libsm6{a} libssh2-1t64{a} libsub-exporter-perl{a} libsub-exporter-progressive-perl{a} libsub-identify-perl{a} libsub-install-perl{a} libsub-name-perl{a} libswitch-perl{a} libtasn1-6{a} libtcl8.6{a} libtext-charwidth-perl{a} libtext-wrapi18n-perl{a} libthai-data{a} libthai0{a} libtiff6{a} libtimedate-perl{a} libtirpc-common{a} libtirpc-dev{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} libunistring5{a} liburi-perl{a} libvariable-magic-perl{a} libwebp7{a} libwww-curl-perl{a} libwww-curl-simple-perl{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2-16{a} libxmuu1{a} libxrender1{a} libxss1{a} libxt6t64{a} libzstd-dev{a} m4{a} man-db{a} openssl{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} r-base-core{a} r-base-dev{a} r-bioc-biocgenerics{a} r-bioc-biostrings{a} r-bioc-genomeinfodb{a} r-bioc-genomeinfodbdata{a} r-bioc-iranges{a} r-bioc-s4vectors{a} r-bioc-ucsc.utils{a} r-bioc-xvector{a} r-bioc-zlibbioc{a} r-cran-askpass{a} r-cran-crayon{a} r-cran-curl{a} r-cran-httr{a} r-cran-jsonlite{a} r-cran-mime{a} r-cran-openssl{a} r-cran-png{a} r-cran-r6{a} r-cran-sys{a} readline-common{a} sensible-utils{a} tzdata{a} ucf{a} unzip{a} x11-common{a} xauth{a} xdg-utils{a} zip{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc cme curl devscripts git-buildpackage krb5-locales libarchive-cpio-perl libclass-c3-xs-perl libdevel-lexalias-perl libdevel-partialdump-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libio-compress-brotli-perl libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools libsasl2-modules libx11-protocol-perl linux-sysctl-defaults lynx psmisc publicsuffix r-cran-covr r-cran-digest r-cran-httpuv r-cran-jpeg r-cran-knitr r-cran-lobstr r-cran-mockery r-cran-r.rsp r-cran-readr r-cran-rmarkdown r-cran-rstudioapi r-cran-sf r-cran-sodium r-cran-spelling r-cran-testthat r-cran-vctrs r-cran-withr r-cran-xml2 r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 216 newly installed, 0 to remove and 0 not upgraded. Need to get 150 MB of archives. After unpacking 394 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian forky/main amd64 libexpat1 amd64 2.7.3-1 [112 kB] Get: 2 http://deb.debian.org/debian forky/main amd64 tzdata all 2025b-5 [260 kB] Get: 3 http://deb.debian.org/debian forky/main amd64 libproc2-0 amd64 2:4.0.4-9 [65.6 kB] Get: 4 http://deb.debian.org/debian forky/main amd64 procps amd64 2:4.0.4-9 [882 kB] Get: 5 http://deb.debian.org/debian forky/main amd64 readline-common all 8.3-3 [74.8 kB] Get: 6 http://deb.debian.org/debian forky/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get: 7 http://deb.debian.org/debian forky/main amd64 openssl amd64 3.5.4-1 [1496 kB] Get: 8 http://deb.debian.org/debian forky/main amd64 ca-certificates all 20250419 [162 kB] Get: 9 http://deb.debian.org/debian forky/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 10 http://deb.debian.org/debian forky/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 11 http://deb.debian.org/debian forky/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 12 http://deb.debian.org/debian forky/main amd64 gettext-base amd64 0.23.1-2+b1 [244 kB] Get: 13 http://deb.debian.org/debian forky/main amd64 libuchardet0 amd64 0.0.8-2 [68.5 kB] Get: 14 http://deb.debian.org/debian forky/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 15 http://deb.debian.org/debian forky/main amd64 bsdextrautils amd64 2.41.2-4 [98.5 kB] Get: 16 http://deb.debian.org/debian forky/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 17 http://deb.debian.org/debian forky/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 18 http://deb.debian.org/debian forky/main amd64 libtext-charwidth-perl amd64 0.04-11+b4 [9476 B] Get: 19 http://deb.debian.org/debian forky/main amd64 libtext-wrapi18n-perl all 0.06-10 [8808 B] Get: 20 http://deb.debian.org/debian forky/main amd64 ucf all 3.0052 [43.3 kB] Get: 21 http://deb.debian.org/debian forky/main amd64 m4 amd64 1.4.20-2 [325 kB] Get: 22 http://deb.debian.org/debian forky/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 23 http://deb.debian.org/debian forky/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 24 http://deb.debian.org/debian forky/main amd64 automake all 1:1.18.1-2 [877 kB] Get: 25 http://deb.debian.org/debian forky/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 26 http://deb.debian.org/debian forky/main amd64 dctrl-tools amd64 2.24-3+b1 [104 kB] Get: 27 http://deb.debian.org/debian forky/main amd64 libdebhelper-perl all 13.28 [92.4 kB] Get: 28 http://deb.debian.org/debian forky/main amd64 libtool all 2.5.4-7 [540 kB] Get: 29 http://deb.debian.org/debian forky/main amd64 dh-autoreconf all 21 [12.2 kB] Get: 30 http://deb.debian.org/debian forky/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 31 http://deb.debian.org/debian forky/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 32 http://deb.debian.org/debian forky/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 33 http://deb.debian.org/debian forky/main amd64 libelf1t64 amd64 0.193-3 [192 kB] Get: 34 http://deb.debian.org/debian forky/main amd64 dwz amd64 0.16-2 [108 kB] Get: 35 http://deb.debian.org/debian forky/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 36 http://deb.debian.org/debian forky/main amd64 libxml2-16 amd64 2.14.6+dfsg-0.1 [651 kB] Get: 37 http://deb.debian.org/debian forky/main amd64 gettext amd64 0.23.1-2+b1 [1680 kB] Get: 38 http://deb.debian.org/debian forky/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 39 http://deb.debian.org/debian forky/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 40 http://deb.debian.org/debian forky/main amd64 debhelper all 13.28 [941 kB] Get: 41 http://deb.debian.org/debian forky/main amd64 zip amd64 3.0-15 [235 kB] Get: 42 http://deb.debian.org/debian forky/main amd64 unzip amd64 6.0-29 [173 kB] Get: 43 http://deb.debian.org/debian forky/main amd64 libpaper2 amd64 2.2.5-0.3+b2 [16.7 kB] Get: 44 http://deb.debian.org/debian forky/main amd64 libpaper-utils amd64 2.2.5-0.3+b2 [16.5 kB] Get: 45 http://deb.debian.org/debian forky/main amd64 xdg-utils all 1.2.1-2 [75.8 kB] Get: 46 http://deb.debian.org/debian forky/main amd64 libblas3 amd64 3.12.1-7 [215 kB] Get: 47 http://deb.debian.org/debian forky/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get: 48 http://deb.debian.org/debian forky/main amd64 libpng16-16t64 amd64 1.6.50-1 [282 kB] Get: 49 http://deb.debian.org/debian forky/main amd64 libfreetype6 amd64 2.13.3+dfsg-1 [452 kB] Get: 50 http://deb.debian.org/debian forky/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 51 http://deb.debian.org/debian forky/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 52 http://deb.debian.org/debian forky/main amd64 fontconfig-config amd64 2.15.0-2.4 [318 kB] Get: 53 http://deb.debian.org/debian forky/main amd64 libfontconfig1 amd64 2.15.0-2.4 [401 kB] Get: 54 http://deb.debian.org/debian forky/main amd64 libpixman-1-0 amd64 0.46.4-1 [259 kB] Get: 55 http://deb.debian.org/debian forky/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB] Get: 56 http://deb.debian.org/debian forky/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB] Get: 57 http://deb.debian.org/debian forky/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB] Get: 58 http://deb.debian.org/debian forky/main amd64 libx11-data all 2:1.8.12-1 [343 kB] Get: 59 http://deb.debian.org/debian forky/main amd64 libx11-6 amd64 2:1.8.12-1 [815 kB] Get: 60 http://deb.debian.org/debian forky/main amd64 libxcb-render0 amd64 1.17.0-2+b1 [115 kB] Get: 61 http://deb.debian.org/debian forky/main amd64 libxcb-shm0 amd64 1.17.0-2+b1 [105 kB] Get: 62 http://deb.debian.org/debian forky/main amd64 libxext6 amd64 2:1.3.4-1+b3 [50.4 kB] Get: 63 http://deb.debian.org/debian forky/main amd64 libxrender1 amd64 1:0.9.12-1 [27.9 kB] Get: 64 http://deb.debian.org/debian forky/main amd64 libcairo2 amd64 1.18.4-1+b1 [538 kB] Get: 65 http://deb.debian.org/debian forky/main amd64 libnghttp3-9 amd64 1.12.0-1 [68.4 kB] Get: 66 http://deb.debian.org/debian forky/main amd64 libngtcp2-16 amd64 1.16.0-1 [136 kB] Get: 67 http://deb.debian.org/debian forky/main amd64 libkrb5support0 amd64 1.21.3-5 [33.0 kB] Get: 68 http://deb.debian.org/debian forky/main amd64 libcom-err2 amd64 1.47.2-3+b3 [25.0 kB] Get: 69 http://deb.debian.org/debian forky/main amd64 libk5crypto3 amd64 1.21.3-5 [81.5 kB] Get: 70 http://deb.debian.org/debian forky/main amd64 libkeyutils1 amd64 1.6.3-6 [9456 B] Get: 71 http://deb.debian.org/debian forky/main amd64 libkrb5-3 amd64 1.21.3-5 [326 kB] Get: 72 http://deb.debian.org/debian forky/main amd64 libgssapi-krb5-2 amd64 1.21.3-5 [138 kB] Get: 73 http://deb.debian.org/debian forky/main amd64 libidn2-0 amd64 2.3.8-4 [110 kB] Get: 74 http://deb.debian.org/debian forky/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-10 [19.8 kB] Get: 75 http://deb.debian.org/debian forky/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-10 [57.8 kB] Get: 76 http://deb.debian.org/debian forky/main amd64 libldap2 amd64 2.6.10+dfsg-1 [194 kB] Get: 77 http://deb.debian.org/debian forky/main amd64 libnghttp2-14 amd64 1.64.0-1.1+b1 [76.2 kB] Get: 78 http://deb.debian.org/debian forky/main amd64 libngtcp2-crypto-ossl0 amd64 1.16.0-1 [27.5 kB] Get: 79 http://deb.debian.org/debian forky/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 80 http://deb.debian.org/debian forky/main amd64 libffi8 amd64 3.5.2-2 [25.5 kB] Get: 81 http://deb.debian.org/debian forky/main amd64 libp11-kit0 amd64 0.25.9-2 [443 kB] Get: 82 http://deb.debian.org/debian forky/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get: 83 http://deb.debian.org/debian forky/main amd64 libgnutls30t64 amd64 3.8.10-3 [1493 kB] Get: 84 http://deb.debian.org/debian forky/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-3 [58.3 kB] Get: 85 http://deb.debian.org/debian forky/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 86 http://deb.debian.org/debian forky/main amd64 libcurl4t64 amd64 8.17.0~rc2-1 [408 kB] Get: 87 http://deb.debian.org/debian forky/main amd64 libdeflate0 amd64 1.23-2 [47.3 kB] Get: 88 http://deb.debian.org/debian forky/main amd64 libglib2.0-0t64 amd64 2.86.1-1 [1546 kB] Get: 89 http://deb.debian.org/debian forky/main amd64 libicu76 amd64 76.1-4 [9722 kB] Get: 90 http://deb.debian.org/debian forky/main amd64 libjpeg62-turbo amd64 1:2.1.5-4 [168 kB] Get: 91 http://deb.debian.org/debian forky/main amd64 libgfortran5 amd64 15.2.0-7 [862 kB] Get: 92 http://deb.debian.org/debian forky/main amd64 liblapack3 amd64 3.12.1-7 [2785 kB] Get: 93 http://deb.debian.org/debian forky/main amd64 fontconfig amd64 2.15.0-2.4 [464 kB] Get: 94 http://deb.debian.org/debian forky/main amd64 libfribidi0 amd64 1.0.16-3 [26.6 kB] Get: 95 http://deb.debian.org/debian forky/main amd64 libgraphite2-3 amd64 1.3.14-11 [76.7 kB] Get: 96 http://deb.debian.org/debian forky/main amd64 libharfbuzz0b amd64 12.1.0-1 [530 kB] Get: 97 http://deb.debian.org/debian forky/main amd64 libthai-data all 0.1.29-2 [168 kB] Get: 98 http://deb.debian.org/debian forky/main amd64 libdatrie1 amd64 0.2.13-4 [38.0 kB] Get: 99 http://deb.debian.org/debian forky/main amd64 libthai0 amd64 0.1.29-2+b1 [49.4 kB] Get: 100 http://deb.debian.org/debian forky/main amd64 libpango-1.0-0 amd64 1.56.3-2 [239 kB] Get: 101 http://deb.debian.org/debian forky/main amd64 libpangoft2-1.0-0 amd64 1.56.3-2 [62.0 kB] Get: 102 http://deb.debian.org/debian forky/main amd64 libpangocairo-1.0-0 amd64 1.56.3-2 [38.1 kB] Get: 103 http://deb.debian.org/debian forky/main amd64 libreadline8t64 amd64 8.3-3 [191 kB] Get: 104 http://deb.debian.org/debian forky/main amd64 libtcl8.6 amd64 8.6.17+dfsg-1 [1041 kB] Get: 105 http://deb.debian.org/debian forky/main amd64 libjbig0 amd64 2.1-6.1+b2 [32.1 kB] Get: 106 http://deb.debian.org/debian forky/main amd64 liblerc4 amd64 4.0.0+ds-5 [183 kB] Get: 107 http://deb.debian.org/debian forky/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [116 kB] Get: 108 http://deb.debian.org/debian forky/main amd64 libwebp7 amd64 1.5.0-0.1 [318 kB] Get: 109 http://deb.debian.org/debian forky/main amd64 libtiff6 amd64 4.7.1-1 [361 kB] Get: 110 http://deb.debian.org/debian forky/main amd64 libtirpc-common all 1.3.6+ds-1 [11.0 kB] Get: 111 http://deb.debian.org/debian forky/main amd64 libtirpc3t64 amd64 1.3.6+ds-1 [83.3 kB] Get: 112 http://deb.debian.org/debian forky/main amd64 libxft2 amd64 2.3.6-1+b4 [54.5 kB] Get: 113 http://deb.debian.org/debian forky/main amd64 x11-common all 1:7.7+26 [217 kB] Get: 114 http://deb.debian.org/debian forky/main amd64 libxss1 amd64 1:1.2.3-1+b3 [17.0 kB] Get: 115 http://deb.debian.org/debian forky/main amd64 libtk8.6 amd64 8.6.17-1 [794 kB] Get: 116 http://deb.debian.org/debian forky/main amd64 libice6 amd64 2:1.1.1-1 [65.4 kB] Get: 117 http://deb.debian.org/debian forky/main amd64 libsm6 amd64 2:1.2.6-1 [37.3 kB] Get: 118 http://deb.debian.org/debian forky/main amd64 libxt6t64 amd64 1:1.2.1-1.3 [208 kB] Get: 119 http://deb.debian.org/debian forky/main amd64 r-base-core amd64 4.5.1-1 [28.7 MB] Get: 120 http://deb.debian.org/debian forky/main amd64 libgfortran-15-dev amd64 15.2.0-7 [886 kB] Get: 121 http://deb.debian.org/debian forky/main amd64 gfortran-15-x86-64-linux-gnu amd64 15.2.0-7 [12.7 MB] Get: 122 http://deb.debian.org/debian forky/main amd64 gfortran-15 amd64 15.2.0-7 [18.0 kB] Get: 123 http://deb.debian.org/debian forky/main amd64 gfortran-x86-64-linux-gnu amd64 4:15.2.0-4 [1276 B] Get: 124 http://deb.debian.org/debian forky/main amd64 gfortran amd64 4:15.2.0-4 [1436 B] Get: 125 http://deb.debian.org/debian forky/main amd64 libblas-dev amd64 3.12.1-7 [229 kB] Get: 126 http://deb.debian.org/debian forky/main amd64 liblapack-dev amd64 3.12.1-7 [5894 kB] Get: 127 http://deb.debian.org/debian forky/main amd64 libncurses6 amd64 6.5+20250216-2 [105 kB] Get: 128 http://deb.debian.org/debian forky/main amd64 libncurses-dev amd64 6.5+20250216-2 [353 kB] Get: 129 http://deb.debian.org/debian forky/main amd64 libreadline-dev amd64 8.3-3 [175 kB] Get: 130 http://deb.debian.org/debian forky/main amd64 libjpeg62-turbo-dev amd64 1:2.1.5-4 [292 kB] Get: 131 http://deb.debian.org/debian forky/main amd64 libjpeg-dev amd64 1:2.1.5-4 [72.2 kB] Get: 132 http://deb.debian.org/debian forky/main amd64 libpcre2-16-0 amd64 10.46-1 [281 kB] Get: 133 http://deb.debian.org/debian forky/main amd64 libpcre2-32-0 amd64 10.46-1 [268 kB] Get: 134 http://deb.debian.org/debian forky/main amd64 libpcre2-posix3 amd64 10.46-1 [63.9 kB] Get: 135 http://deb.debian.org/debian forky/main amd64 libpcre2-dev amd64 10.46-1 [853 kB] Get: 136 http://deb.debian.org/debian forky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Get: 137 http://deb.debian.org/debian forky/main amd64 libpng-dev amd64 1.6.50-1 [366 kB] Get: 138 http://deb.debian.org/debian forky/main amd64 libbz2-dev amd64 1.0.8-6 [31.4 kB] Get: 139 http://deb.debian.org/debian forky/main amd64 liblzma-dev amd64 5.8.1-2 [349 kB] Get: 140 http://deb.debian.org/debian forky/main amd64 icu-devtools amd64 76.1-4 [215 kB] Get: 141 http://deb.debian.org/debian forky/main amd64 libicu-dev amd64 76.1-4 [10.8 MB] Get: 142 http://deb.debian.org/debian forky/main amd64 libxmuu1 amd64 2:1.1.3-3+b4 [21.9 kB] Get: 143 http://deb.debian.org/debian forky/main amd64 xauth amd64 1:1.1.2-1.1 [35.9 kB] Get: 144 http://deb.debian.org/debian forky/main amd64 libpkgconf3 amd64 1.8.1-4 [36.4 kB] Get: 145 http://deb.debian.org/debian forky/main amd64 pkgconf-bin amd64 1.8.1-4 [30.2 kB] Get: 146 http://deb.debian.org/debian forky/main amd64 pkgconf amd64 1.8.1-4 [26.2 kB] Get: 147 http://deb.debian.org/debian forky/main amd64 libtirpc-dev amd64 1.3.6+ds-1 [191 kB] Get: 148 http://deb.debian.org/debian forky/main amd64 libdeflate-dev amd64 1.23-2 [55.9 kB] Get: 149 http://deb.debian.org/debian forky/main amd64 libzstd-dev amd64 1.5.7+dfsg-2 [375 kB] Get: 150 http://deb.debian.org/debian forky/main amd64 r-base-dev all 4.5.1-1 [4360 B] Get: 151 http://deb.debian.org/debian forky/main amd64 libfile-which-perl all 1.27-2 [15.1 kB] Get: 152 http://deb.debian.org/debian forky/main amd64 libswitch-perl all 2.17-3 [20.3 kB] Get: 153 http://deb.debian.org/debian forky/main amd64 libclone-perl amd64 0.47-1+b1 [13.9 kB] Get: 154 http://deb.debian.org/debian forky/main amd64 libencode-locale-perl all 1.05-3 [12.9 kB] Get: 155 http://deb.debian.org/debian forky/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB] Get: 156 http://deb.debian.org/debian forky/main amd64 libhttp-date-perl all 6.06-1 [10.7 kB] Get: 157 http://deb.debian.org/debian forky/main amd64 libio-html-perl all 1.004-3 [16.2 kB] Get: 158 http://deb.debian.org/debian forky/main amd64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get: 159 http://deb.debian.org/debian forky/main amd64 liburi-perl all 5.30-1 [105 kB] Get: 160 http://deb.debian.org/debian forky/main amd64 libhttp-message-perl all 7.01-1 [80.0 kB] Get: 161 http://deb.debian.org/debian forky/main amd64 libparams-util-perl amd64 1.102-3+b1 [24.4 kB] Get: 162 http://deb.debian.org/debian forky/main amd64 libsub-install-perl all 0.929-1 [10.5 kB] Get: 163 http://deb.debian.org/debian forky/main amd64 libdata-optlist-perl all 0.114-1 [10.6 kB] Get: 164 http://deb.debian.org/debian forky/main amd64 libb-hooks-op-check-perl amd64 0.22-3+b2 [10.6 kB] Get: 165 http://deb.debian.org/debian forky/main amd64 libdynaloader-functions-perl all 0.004-2 [12.2 kB] Get: 166 http://deb.debian.org/debian forky/main amd64 libdevel-callchecker-perl amd64 0.009-2 [15.6 kB] Get: 167 http://deb.debian.org/debian forky/main amd64 libparams-classify-perl amd64 0.015-2+b4 [22.5 kB] Get: 168 http://deb.debian.org/debian forky/main amd64 libmodule-runtime-perl all 0.018-1 [17.8 kB] Get: 169 http://deb.debian.org/debian forky/main amd64 libtry-tiny-perl all 0.32-1 [22.9 kB] Get: 170 http://deb.debian.org/debian forky/main amd64 libmodule-implementation-perl all 0.09-2 [12.6 kB] Get: 171 http://deb.debian.org/debian forky/main amd64 libpackage-stash-perl all 0.40-1 [22.0 kB] Get: 172 http://deb.debian.org/debian forky/main amd64 libclass-load-perl all 0.25-2 [15.3 kB] Get: 173 http://deb.debian.org/debian forky/main amd64 libclass-load-xs-perl amd64 0.10-2+b4 [14.2 kB] Get: 174 http://deb.debian.org/debian forky/main amd64 libsub-exporter-progressive-perl all 0.001013-3 [7496 B] Get: 175 http://deb.debian.org/debian forky/main amd64 libdevel-globaldestruction-perl all 0.14-4 [7144 B] Get: 176 http://deb.debian.org/debian forky/main amd64 libalgorithm-c3-perl all 0.11-2 [10.8 kB] Get: 177 http://deb.debian.org/debian forky/main amd64 libclass-c3-perl all 0.35-2 [21.0 kB] Get: 178 http://deb.debian.org/debian forky/main amd64 libmro-compat-perl all 0.15-2 [11.8 kB] Get: 179 http://deb.debian.org/debian forky/main amd64 libdevel-overloadinfo-perl all 0.008-1 [7748 B] Get: 180 http://deb.debian.org/debian forky/main amd64 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB] Get: 181 http://deb.debian.org/debian forky/main amd64 libsub-exporter-perl all 0.990-1 [50.6 kB] Get: 182 http://deb.debian.org/debian forky/main amd64 libeval-closure-perl all 0.14-3 [11.2 kB] Get: 183 http://deb.debian.org/debian forky/main amd64 libdist-checkconflicts-perl all 0.11-2 [10.5 kB] Get: 184 http://deb.debian.org/debian forky/main amd64 libmodule-runtime-conflicts-perl all 0.003-2 [7356 B] Get: 185 http://deb.debian.org/debian forky/main amd64 libpackage-deprecationmanager-perl all 0.18-1 [17.6 kB] Get: 186 http://deb.debian.org/debian forky/main amd64 libpackage-stash-xs-perl amd64 0.30-1+b4 [20.9 kB] Get: 187 http://deb.debian.org/debian forky/main amd64 libmoose-perl amd64 2.4000-1 [767 kB] Get: 188 http://deb.debian.org/debian forky/main amd64 libvariable-magic-perl amd64 0.64-1+b1 [44.9 kB] Get: 189 http://deb.debian.org/debian forky/main amd64 libb-hooks-endofscope-perl all 0.28-2 [17.6 kB] Get: 190 http://deb.debian.org/debian forky/main amd64 libsub-identify-perl amd64 0.14-3+b3 [11.3 kB] Get: 191 http://deb.debian.org/debian forky/main amd64 libsub-name-perl amd64 0.28-1 [12.2 kB] Get: 192 http://deb.debian.org/debian forky/main amd64 libnamespace-clean-perl all 0.27-2 [17.8 kB] Get: 193 http://deb.debian.org/debian forky/main amd64 libngtcp2-crypto-gnutls8 amd64 1.16.0-1 [25.2 kB] Get: 194 http://deb.debian.org/debian forky/main amd64 libcurl3t64-gnutls amd64 8.17.0~rc2-1 [400 kB] Get: 195 http://deb.debian.org/debian forky/main amd64 libwww-curl-perl amd64 4.17-12 [58.4 kB] Get: 196 http://deb.debian.org/debian forky/main amd64 libwww-curl-simple-perl all 0.100191-3 [12.6 kB] Get: 197 http://deb.debian.org/debian forky/main amd64 dh-r all 20250812 [42.6 kB] Get: 198 http://deb.debian.org/debian forky/main amd64 r-bioc-biocgenerics all 0.52.0-2 [627 kB] Get: 199 http://deb.debian.org/debian forky/main amd64 r-bioc-s4vectors amd64 0.44.0+dfsg-2 [2061 kB] Get: 200 http://deb.debian.org/debian forky/main amd64 r-bioc-iranges amd64 2.40.1-3 [2310 kB] Get: 201 http://deb.debian.org/debian forky/main amd64 r-bioc-zlibbioc all 1.52.0+dfsg-2 [9968 B] Get: 202 http://deb.debian.org/debian forky/main amd64 r-bioc-xvector amd64 0.46.0-2 [620 kB] Get: 203 http://deb.debian.org/debian forky/main amd64 r-cran-curl amd64 7.0.0+dfsg-1 [203 kB] Get: 204 http://deb.debian.org/debian forky/main amd64 r-cran-jsonlite amd64 1.9.1+dfsg-1 [445 kB] Get: 205 http://deb.debian.org/debian forky/main amd64 r-cran-mime amd64 0.12-2 [35.6 kB] Get: 206 http://deb.debian.org/debian forky/main amd64 r-cran-sys amd64 3.4.3-1 [44.4 kB] Get: 207 http://deb.debian.org/debian forky/main amd64 r-cran-askpass amd64 1.2.1-1 [24.2 kB] Get: 208 http://deb.debian.org/debian forky/main amd64 r-cran-openssl amd64 2.3.2+dfsg-1 [402 kB] Get: 209 http://deb.debian.org/debian forky/main amd64 r-cran-r6 all 2.6.1-1 [106 kB] Get: 210 http://deb.debian.org/debian forky/main amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] Get: 211 http://deb.debian.org/debian forky/main amd64 r-bioc-ucsc.utils all 1.2.0+ds-2 [77.3 kB] Get: 212 http://deb.debian.org/debian forky/main amd64 r-bioc-genomeinfodbdata all 1.2.13-2 [12.9 MB] Get: 213 http://deb.debian.org/debian forky/main amd64 r-bioc-genomeinfodb all 1.42.3+dfsg-1 [3848 kB] Get: 214 http://deb.debian.org/debian forky/main amd64 r-cran-crayon all 1.5.3-1 [165 kB] Get: 215 http://deb.debian.org/debian forky/main amd64 r-bioc-biostrings amd64 2.74.1+dfsg-2 [13.4 MB] Get: 216 http://deb.debian.org/debian forky/main amd64 r-cran-png amd64 0.1-8-1+b1 [41.5 kB] Fetched 150 MB in 10s (15.4 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19869 files and directories currently installed.) Preparing to unpack .../000-libexpat1_2.7.3-1_amd64.deb ... Unpacking libexpat1:amd64 (2.7.3-1) ... Selecting previously unselected package tzdata. Preparing to unpack .../001-tzdata_2025b-5_all.deb ... Unpacking tzdata (2025b-5) ... Selecting previously unselected package libproc2-0:amd64. 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Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.3-3) ... Selecting previously unselected package libtcl8.6:amd64. Preparing to unpack .../103-libtcl8.6_8.6.17+dfsg-1_amd64.deb ... Unpacking libtcl8.6:amd64 (8.6.17+dfsg-1) ... Selecting previously unselected package libjbig0:amd64. Preparing to unpack .../104-libjbig0_2.1-6.1+b2_amd64.deb ... Unpacking libjbig0:amd64 (2.1-6.1+b2) ... Selecting previously unselected package liblerc4:amd64. 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Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:amd64 (1.3.6+ds-1) ... Selecting previously unselected package libxft2:amd64. Preparing to unpack .../111-libxft2_2.3.6-1+b4_amd64.deb ... Unpacking libxft2:amd64 (2.3.6-1+b4) ... Selecting previously unselected package x11-common. Preparing to unpack .../112-x11-common_1%3a7.7+26_all.deb ... Unpacking x11-common (1:7.7+26) ... Selecting previously unselected package libxss1:amd64. Preparing to unpack .../113-libxss1_1%3a1.2.3-1+b3_amd64.deb ... Unpacking libxss1:amd64 (1:1.2.3-1+b3) ... Selecting previously unselected package libtk8.6:amd64. Preparing to unpack .../114-libtk8.6_8.6.17-1_amd64.deb ... Unpacking libtk8.6:amd64 (8.6.17-1) ... Selecting previously unselected package libice6:amd64. 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Setting up gfortran (4:15.2.0-4) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libclass-load-perl (0.25-2) ... Setting up r-base-core (4.5.1-1) ... Creating config file /etc/R/Renviron with new version Setting up r-cran-crayon (1.5.3-1) ... Setting up libpackage-deprecationmanager-perl (0.18-1) ... Setting up libdevel-overloadinfo-perl (0.008-1) ... Setting up libclass-load-xs-perl (0.10-2+b4) ... Setting up r-cran-r6 (2.6.1-1) ... Setting up libb-hooks-endofscope-perl (0.28-2) ... Setting up r-bioc-genomeinfodbdata (1.2.13-2) ... Setting up r-cran-curl (7.0.0+dfsg-1) ... Setting up r-bioc-biocgenerics (0.52.0-2) ... Setting up r-base-dev (4.5.1-1) ... Setting up r-cran-sys (3.4.3-1) ... Setting up r-cran-mime (0.12-2) ... Setting up libmoose-perl:amd64 (2.4000-1) ... Setting up r-bioc-zlibbioc (1.52.0+dfsg-2) ... Setting up r-cran-askpass (1.2.1-1) ... Setting up r-cran-png (0.1-8-1+b1) ... Setting up r-cran-jsonlite (1.9.1+dfsg-1) ... Setting up r-bioc-s4vectors (0.44.0+dfsg-2) ... Setting up libnamespace-clean-perl (0.27-2) ... Setting up r-bioc-iranges (2.40.1-3) ... Setting up r-cran-openssl (2.3.2+dfsg-1) ... Setting up libwww-curl-simple-perl (0.100191-3) ... Setting up r-cran-httr (1.4.7+dfsg-1) ... Setting up r-bioc-xvector (0.46.0-2) ... Setting up dh-r (20250812) ... Setting up r-bioc-ucsc.utils (1.2.0+ds-2) ... Setting up r-bioc-genomeinfodb (1.42.3+dfsg-1) ... Setting up r-bioc-biostrings (2.74.1+dfsg-2) ... Processing triggers for libc-bin (2.41-12) ... Processing triggers for ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/r-bioc-keggrest-1.46.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../r-bioc-keggrest_1.46.0+dfsg-3_source.changes dpkg-buildpackage: info: source package r-bioc-keggrest dpkg-buildpackage: info: source version 1.46.0+dfsg-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Rebecca N. Palmer dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem R dh_auto_clean -O--buildsystem=R dh_autoreconf_clean -O--buildsystem=R dh_clean -O--buildsystem=R debian/rules binary dh binary --buildsystem R dh_update_autotools_config -O--buildsystem=R dh_autoreconf -O--buildsystem=R dh_auto_configure -O--buildsystem=R dh_auto_build -O--buildsystem=R dh_auto_test -O--buildsystem=R create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=R dh_prep -O--buildsystem=R dh_auto_install --destdir=debian/r-bioc-keggrest/ -O--buildsystem=R I: R Package: KEGGREST Version: 1.46.0 I: Building using R version 4.5.1-1 I: R API version: r-api-4.0 I: Using built-time from d/changelog: Wed, 30 Apr 2025 22:08:26 +0100 mkdir -p /build/reproducible-path/r-bioc-keggrest-1.46.0\+dfsg/debian/r-bioc-keggrest/usr/lib/R/site-library R CMD INSTALL -l /build/reproducible-path/r-bioc-keggrest-1.46.0\+dfsg/debian/r-bioc-keggrest/usr/lib/R/site-library --clean . --built-timestamp="'Wed, 30 Apr 2025 22:08:26 +0100'" * installing *source* package 'KEGGREST' ... ** this is package 'KEGGREST' version '1.46.0' file 'inst/doc/KEGGREST-vignette.html' is missing file 'R/parsers.R' has the wrong MD5 checksum ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading code for methods in class "KEGGFlatFileRecord" was not checked for suspicious field assignments (recommended package 'codetools' not available?) ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (KEGGREST) W: Ignoring specified R dependency: R (>= 3.5.0) I: Using r-cran-runit for Suggests:RUnit I: Using r-bioc-biocgenerics for Suggests:BiocGenerics I: Using r-bioc-biocstyle for Suggests:BiocStyle I: Using r-cran-knitr for Suggests:knitr I: Using r-cran-markdown for Suggests:markdown I: Using r-cran-httr for Imports:httr I: Using r-cran-png for Imports:png I: Using r-bioc-biostrings for Imports:Biostrings I: BioConductor API version: r-api-bioc-3.20 I: Use r-bioc-keggrest as Debian binary package for variables substitution dh_installdocs -O--buildsystem=R dh_installchangelogs -O--buildsystem=R dh_installsystemduser -O--buildsystem=R dh_perl -O--buildsystem=R dh_link -O--buildsystem=R dh_strip_nondeterminism -O--buildsystem=R dh_compress -O--buildsystem=R debian/rules override_dh_fixperms make[1]: Entering directory '/build/reproducible-path/r-bioc-keggrest-1.46.0+dfsg' dh_fixperms find debian -name "*.R" -exec chmod -x \{\} \; make[1]: Leaving directory '/build/reproducible-path/r-bioc-keggrest-1.46.0+dfsg' dh_missing -O--buildsystem=R dh_installdeb -O--buildsystem=R dh_gencontrol -O--buildsystem=R dh_md5sums -O--buildsystem=R dh_builddeb -O--buildsystem=R dpkg-deb: building package 'r-bioc-keggrest' in '../r-bioc-keggrest_1.46.0+dfsg-3_all.deb'. dpkg-genbuildinfo --build=binary -O../r-bioc-keggrest_1.46.0+dfsg-3_amd64.buildinfo dpkg-genchanges --build=binary -O../r-bioc-keggrest_1.46.0+dfsg-3_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1814357 and its subdirectories I: Current time: Thu Oct 30 15:47:05 -12 2025 I: pbuilder-time-stamp: 1761882425 Fri Oct 31 03:47:05 UTC 2025 I: 1st build successful. Starting 2nd build on remote node ionos15-amd64.debian.net. Fri Oct 31 03:47:05 UTC 2025 I: Preparing to do remote build '2' on ionos15-amd64.debian.net. Fri Oct 31 03:47:05 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos15-amd64.debian.net is marked as down. Fri Oct 31 03:47:06 UTC 2025 - checking via ssh if ionos15-amd64.debian.net is up. removed '/tmp/read-only-fs-test-AEiTlb' ==================================================================================== Fri Oct 31 03:47:06 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos15-amd64, called using "2 r-bioc-keggrest forky /srv/reproducible-results/rbuild-debian/r-b-build.IQgZXEkR 1.46.0+dfsg-3" as arguments. Fri Oct 31 03:47:06 UTC 2025 - actually running "reproducible_build.sh" (md5sum cc591790ab2c8e13f5e554202b95c89c) as "/tmp/jenkins-script-wrlvSgEn" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Fri Oct 31 03:47:06 UTC 2025 I: Downloading source for forky/r-bioc-keggrest=1.46.0+dfsg-3 Reading package lists... NOTICE: 'r-bioc-keggrest' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/r-pkg-team/r-bioc-keggrest.git Please use: git clone https://salsa.debian.org/r-pkg-team/r-bioc-keggrest.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 25.1 kB of source archives. Get:1 http://deb.debian.org/debian forky/main r-bioc-keggrest 1.46.0+dfsg-3 (dsc) [2156 B] Get:2 http://deb.debian.org/debian forky/main r-bioc-keggrest 1.46.0+dfsg-3 (tar) [16.4 kB] Get:3 http://deb.debian.org/debian forky/main r-bioc-keggrest 1.46.0+dfsg-3 (diff) [6596 B] Fetched 25.1 kB in 0s (1439 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'r-bioc-keggrest' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/r-pkg-team/r-bioc-keggrest.git Please use: git clone https://salsa.debian.org/r-pkg-team/r-bioc-keggrest.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 25.1 kB of source archives. Get:1 http://deb.debian.org/debian forky/main r-bioc-keggrest 1.46.0+dfsg-3 (dsc) [2156 B] Get:2 http://deb.debian.org/debian forky/main r-bioc-keggrest 1.46.0+dfsg-3 (tar) [16.4 kB] Get:3 http://deb.debian.org/debian forky/main r-bioc-keggrest 1.46.0+dfsg-3 (diff) [6596 B] Fetched 25.1 kB in 0s (1439 kB/s) Download complete and in download only mode ============================================================================= Re-Building r-bioc-keggrest in forky on amd64 on ionos15-amd64 now. Date: Fri Oct 31 03:47:08 UTC 2025 Date UTC: Fri Oct 31 03:47:08 UTC 2025 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.IQgZXEkR + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.IQgZXEkR/pbuilderrc_ZjYm + case ${ARCH} in + case $ARCH in + locale=et_EE + language=et + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' r-bioc-keggrest = debian-installer -o r-bioc-keggrest = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' r-bioc-keggrest = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.IQgZXEkR/pbuilderrc_ZjYm --distribution forky --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.IQgZXEkR/b2 --logfile b2/build.log r-bioc-keggrest_1.46.0+dfsg-3.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Fri Oct 31 17:47:09 +14 2025 I: pbuilder-time-stamp: 1761882429 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] tar: ./build: time stamp 2026-11-29 07:50:53 is 34005823.113826792 s in the future tar: ./dev/ptmx: time stamp 2026-11-29 07:46:28 is 34005558.11361597 s in the future tar: ./dev/zero: time stamp 2026-11-29 07:46:28 is 34005558.113464699 s in the future tar: ./dev/null: time stamp 2026-11-29 07:46:28 is 34005558.113412683 s in the future tar: ./dev/console: time stamp 2026-11-29 07:46:28 is 34005558.113335729 s in the future tar: ./dev/random: time stamp 2026-11-29 07:46:28 is 34005558.113289662 s in the future tar: ./dev/full: time stamp 2026-11-29 07:46:28 is 34005558.113247404 s in the future tar: ./dev/pts: time stamp 2026-11-29 07:46:28 is 34005558.113148638 s in the future tar: ./dev/tty: time stamp 2026-11-29 07:46:28 is 34005558.113060826 s in the future tar: ./dev/urandom: time stamp 2026-11-29 07:46:28 is 34005558.113004157 s in the future tar: ./etc/terminfo: time stamp 2026-11-29 07:46:38 is 34005568.112695757 s in the future tar: ./etc/opt: time stamp 2026-11-29 07:46:28 is 34005558.11118848 s in the future tar: ./etc/security/opasswd: time stamp 2026-11-29 07:46:40 is 34005570.110801619 s in the future tar: ./etc/security: time stamp 2026-11-29 07:46:40 is 34005570.110162298 s in the future tar: ./etc/shadow: time stamp 2026-11-29 07:51:36 is 34005866.109952671 s in the future tar: ./etc/cron.daily: time stamp 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the future tar: ./etc/shells: time stamp 2026-11-29 07:46:39 is 34005569.107201461 s in the future tar: ./etc/default: time stamp 2026-11-29 07:51:35 is 34005865.106868844 s in the future tar: ./etc/group: time stamp 2026-11-29 07:51:36 is 34005866.106750345 s in the future tar: ./etc/ld.so.cache: time stamp 2026-12-02 23:31:27 is 34321457.106533385 s in the future tar: ./etc/.pwd.lock: time stamp 2026-11-29 07:51:36 is 34005866.106416035 s in the future tar: ./etc/skel: time stamp 2026-11-29 07:46:39 is 34005569.106193444 s in the future tar: ./etc/group-: time stamp 2026-11-29 07:46:28 is 34005558.106072086 s in the future tar: ./etc/subuid: time stamp 2026-11-29 07:46:28 is 34005558.106014458 s in the future tar: ./etc/logrotate.d: time stamp 2026-11-30 23:31:29 is 34148659.10539425 s in the future tar: ./etc/pam.d/common-session: time stamp 2026-11-29 07:46:40 is 34005570.105250848 s in the future tar: ./etc/pam.d/common-password: time stamp 2026-11-29 07:46:40 is 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stamp 2026-11-29 07:46:41 is 34005571.103660852 s in the future tar: ./etc/passwd: time stamp 2026-11-29 07:51:36 is 34005866.103588762 s in the future tar: ./etc/dpkg/origins/default: time stamp 2026-11-29 07:46:28 is 34005558.103396542 s in the future tar: ./etc/dpkg/origins: time stamp 2026-11-29 07:46:39 is 34005569.103312518 s in the future tar: ./etc/dpkg/dpkg.cfg.d/02speedup: time stamp 2026-11-29 07:52:40 is 34005930.103059458 s in the future tar: ./etc/dpkg/dpkg.cfg.d: time stamp 2026-11-29 07:52:40 is 34005930.103026086 s in the future tar: ./etc/dpkg: time stamp 2026-11-29 07:50:27 is 34005797.103007118 s in the future tar: ./media: time stamp 2026-11-29 07:46:28 is 34005558.102715042 s in the future tar: ./mnt: time stamp 2026-11-29 07:46:28 is 34005558.102640144 s in the future tar: ./opt: time stamp 2026-11-29 07:46:28 is 34005558.102583035 s in the future tar: ./root: time stamp 2026-11-29 07:46:28 is 34005558.102376976 s in the future tar: ./run/lock: time stamp 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34005567.100112324 s in the future tar: ./usr/share/terminfo/c: time stamp 2026-11-29 07:46:37 is 34005567.099941129 s in the future tar: ./usr/share/terminfo/v: time stamp 2026-11-29 07:46:37 is 34005567.099636058 s in the future tar: ./usr/share/terminfo/w: time stamp 2026-11-29 07:46:37 is 34005567.099482437 s in the future tar: ./usr/share/terminfo/x: time stamp 2026-11-29 07:46:37 is 34005567.099001181 s in the future tar: ./usr/share/terminfo/t: time stamp 2026-11-29 07:46:37 is 34005567.098800957 s in the future tar: ./usr/share/terminfo/r: time stamp 2026-11-29 07:46:37 is 34005567.098498357 s in the future tar: ./usr/share/gdb/auto-load/usr/lib/x86_64-linux-gnu: time stamp 2026-12-02 23:31:17 is 34321447.098145231 s in the future tar: ./usr/share/gdb/auto-load/usr/lib: time stamp 2026-11-29 07:47:59 is 34005649.098117763 s in the future tar: ./usr/share/gdb/auto-load/usr: time stamp 2026-11-29 07:47:59 is 34005649.098102184 s in the future tar: 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./usr/share/man/fr/man7: time stamp 2026-11-30 23:31:29 is 34148659.092880681 s in the future tar: ./usr/share/man/fr/man5: time stamp 2026-11-30 23:31:29 is 34148659.087117927 s in the future tar: ./usr/share/man/fi/man1: time stamp 2026-11-29 07:51:34 is 34005864.086783472 s in the future tar: ./usr/share/man/id/man8: time stamp 2026-11-29 07:51:34 is 34005864.086149128 s in the future tar: ./usr/share/man/id/man1: time stamp 2026-11-29 07:51:34 is 34005864.086029257 s in the future tar: ./usr/share/man/id: time stamp 2026-11-29 07:51:34 is 34005864.086009446 s in the future tar: ./usr/share/man/uk/man8: time stamp 2026-11-29 07:51:34 is 34005864.085183473 s in the future tar: ./usr/share/man/uk/man1: time stamp 2026-11-29 07:51:34 is 34005864.084475391 s in the future tar: ./usr/share/man/uk/man5: time stamp 2026-11-29 07:51:34 is 34005864.084217603 s in the future tar: ./usr/share/man/uk: time stamp 2026-11-29 07:51:34 is 34005864.084192112 s in the future tar: 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future tar: ./usr/include/arm-linux-gnueabi: time stamp 2026-11-29 07:50:00 is 34005761.240807143 s in the future tar: ./usr/include/i386-linux-gnu/asm: time stamp 2026-11-29 07:50:02 is 34005763.240791325 s in the future tar: ./usr/include/i386-linux-gnu: time stamp 2026-11-29 07:50:00 is 34005761.240778481 s in the future tar: ./usr/include/x86_64-linux-gnu/asm: time stamp 2026-11-29 07:50:02 is 34005763.240763892 s in the future tar: ./usr/include/x86_64-linux-gnu: time stamp 2026-11-29 07:50:01 is 34005762.240749771 s in the future tar: ./usr/include/loongarch64-linux-gnu/asm: time stamp 2026-11-29 07:50:02 is 34005763.240727116 s in the future tar: ./usr/include/loongarch64-linux-gnu: time stamp 2026-11-29 07:50:01 is 34005762.240712097 s in the future tar: ./usr/include/s390x-linux-gnu/asm: time stamp 2026-11-29 07:50:02 is 34005763.2406953 s in the future tar: ./usr/include/s390x-linux-gnu: time stamp 2026-11-29 07:50:01 is 34005762.240679808 s in the future tar: ./usr/include/powerpc-linux-gnu/asm: time stamp 2026-11-29 07:50:02 is 34005763.24066338 s in the future tar: ./usr/include/powerpc-linux-gnu: time stamp 2026-11-29 07:50:01 is 34005762.240648903 s in the future tar: ./usr/include: time stamp 2026-11-29 07:50:05 is 34005766.240632636 s in the future tar: ./usr/sbin: time stamp 2026-12-02 20:29:29 is 34310530.240616949 s in the future tar: ./usr/share/aptitude: time stamp 2026-11-29 07:51:39 is 34005860.240599946 s in the future tar: ./usr/share/doc/aptitude: time stamp 2026-11-29 07:51:41 is 34005862.240582562 s in the future tar: ./usr/share/doc/cpp-x86-64-linux-gnu: time stamp 2026-11-29 07:47:05 is 34005586.240566144 s in the future tar: ./usr/share/doc/build-essential: time stamp 2026-11-29 07:46:42 is 34005563.240550237 s in the future tar: ./usr/share/doc: time stamp 2026-11-29 07:51:59 is 34005880.240534387 s in the future tar: ./usr/share/locale/ga/LC_TIME: time stamp 2026-11-29 07:46:31 is 34005552.240515262 s in the future tar: ./usr/share/locale/ga: time stamp 2026-11-29 07:46:26 is 34005547.240502723 s in the future tar: ./usr/share/locale/ru/LC_TIME: time stamp 2026-11-29 07:46:31 is 34005552.240486859 s in the future tar: ./usr/share/locale/ru: time stamp 2026-11-29 07:46:26 is 34005547.240472187 s in the future tar: ./usr/share/locale/af/LC_TIME: time stamp 2026-11-29 07:46:31 is 34005552.240456639 s in the future tar: ./usr/share/locale/af: time stamp 2026-11-29 07:46:26 is 34005547.240440978 s in the future tar: ./usr/share/locale/pt_BR/LC_TIME: time stamp 2026-11-29 07:46:31 is 34005552.240426614 s in the future tar: ./usr/share/locale/pt_BR: time stamp 2026-11-29 07:46:26 is 34005547.240414248 s in the future tar: ./usr/share/locale/hr/LC_TIME: time stamp 2026-11-29 07:46:31 is 34005552.240397433 s in the future tar: ./usr/share/locale/hr: time stamp 2026-11-29 07:46:26 is 34005547.240382598 s in the future tar: ./usr/share/locale/vi/LC_TIME: time stamp 2026-11-29 07:46:31 is 34005552.240366142 s in the future tar: ./usr/share/locale/vi: time stamp 2026-11-29 07:46:26 is 34005547.240350867 s in the future tar: ./usr/share/locale/eo/LC_TIME: time stamp 2026-11-29 07:46:31 is 34005552.240334056 s in the future tar: ./usr/share/locale/eo: time stamp 2026-11-29 07:46:26 is 34005547.240318545 s in the future tar: ./usr/share/locale/eu/LC_TIME: time stamp 2026-11-29 07:46:31 is 34005552.240302421 s in the future tar: ./usr/share/locale/sl/LC_TIME: time stamp 2026-11-29 07:46:31 is 34005552.240277384 s in the future tar: ./usr/share/locale/sl: time stamp 2026-11-29 07:46:26 is 34005547.240263089 s in the future tar: ./usr/share/locale/el/LC_TIME: time stamp 2026-11-29 07:46:31 is 34005552.240249069 s in the future tar: ./usr/share/locale/el: time stamp 2026-11-29 07:46:26 is 34005547.240236784 s in the future tar: ./usr/share/locale/cs/LC_TIME: time stamp 2026-11-29 07:46:31 is 34005552.240222366 s in the future tar: ./usr/share/locale/cs: time stamp 2026-11-29 07:46:26 is 34005547.240210233 s in the future tar: ./usr/share/locale/da/LC_TIME: time stamp 2026-11-29 07:46:31 is 34005552.240196951 s in the future tar: ./usr/share/locale/da: time stamp 2026-11-29 07:46:26 is 34005547.24018508 s in the future tar: ./usr/share/locale/ms/LC_TIME: time stamp 2026-11-29 07:46:31 is 34005552.240170906 s in the future tar: ./usr/share/locale/bg/LC_TIME: time stamp 2026-11-29 07:46:31 is 34005552.240149182 s in the future tar: ./usr/share/locale/bg: time stamp 2026-11-29 07:46:26 is 34005547.240137353 s in the future tar: ./usr/share/locale/lg/LC_TIME: time stamp 2026-11-29 07:46:31 is 34005552.240124998 s in the future tar: ./usr/share/locale/it/LC_TIME: time stamp 2026-11-29 07:46:31 is 34005552.240101992 s in the future tar: ./usr/share/locale/it: time stamp 2026-11-29 07:46:26 is 34005547.240089791 s in the future tar: ./usr/share/locale/ja/LC_TIME: time stamp 2026-11-29 07:46:31 is 34005552.240075887 s in the future tar: ./usr/share/locale/ja: time stamp 2026-11-29 07:46:26 is 34005547.240064217 s in the future tar: ./usr/share/locale/sk/LC_TIME: time stamp 2026-11-29 07:46:31 is 34005552.240050955 s in the future tar: ./usr/share/locale/sk: time stamp 2026-11-29 07:46:26 is 34005547.240038441 s in the future tar: ./usr/share/locale/gl/LC_TIME: time stamp 2026-11-29 07:46:31 is 34005552.240021581 s in the future tar: ./usr/share/locale/gl: time stamp 2026-11-29 07:46:26 is 34005547.240006654 s in the future tar: ./usr/share/locale/ka/LC_TIME: time stamp 2026-11-29 07:46:31 is 34005552.239989767 s in the future tar: ./usr/share/locale/ka: time stamp 2026-11-29 07:46:26 is 34005547.239974528 s in the future tar: ./usr/share/locale/ca/LC_TIME: time stamp 2026-11-29 07:46:31 is 34005552.239957283 s in the future tar: ./usr/share/locale/ca: time stamp 2026-11-29 07:46:26 is 34005547.239942482 s in the future tar: ./usr/share/locale/pl/LC_TIME: time stamp 2026-11-29 07:46:31 is 34005552.239925722 s in the future tar: ./usr/share/locale/pl: time stamp 2026-11-29 07:46:26 is 34005547.239911166 s in the future tar: ./usr/share/locale/ta/LC_TIME: time stamp 2026-11-29 07:46:31 is 34005552.239898157 s in the future tar: ./usr/share/locale/zh_TW/LC_TIME: time stamp 2026-11-29 07:46:31 is 34005552.239875529 s in the future tar: ./usr/share/locale/zh_TW: time stamp 2026-11-29 07:46:26 is 34005547.239861033 s in the future tar: ./usr/share/locale/kk/LC_TIME: time stamp 2026-11-29 07:46:31 is 34005552.239842395 s in the future tar: ./usr/share/locale/ia/LC_TIME: time stamp 2026-11-29 07:46:31 is 34005552.239794549 s in the future tar: ./usr/share/locale/de/LC_TIME: time stamp 2026-11-29 07:46:31 is 34005552.239766459 s in the future tar: ./usr/share/locale/de: time stamp 2026-11-29 07:46:26 is 34005547.239748608 s in the future tar: ./usr/share/locale/ko/LC_TIME: time stamp 2026-11-29 07:46:31 is 34005552.239731576 s in the future tar: ./usr/share/locale/ko: time stamp 2026-11-29 07:46:26 is 34005547.239715957 s in the future tar: ./usr/share/locale/ro/LC_TIME: time stamp 2026-11-29 07:46:31 is 34005552.239697486 s in the future tar: ./usr/share/locale/ro: time stamp 2026-11-29 07:46:26 is 34005547.239682488 s in the future tar: ./usr/share/locale/lt/LC_TIME: time stamp 2026-11-29 07:46:31 is 34005552.239665188 s in the future tar: ./usr/share/locale/lt: time stamp 2026-11-29 07:46:26 is 34005547.239650045 s in the future tar: ./usr/share/locale/es/LC_TIME: time stamp 2026-11-29 07:46:31 is 34005552.23963325 s in the future tar: ./usr/share/locale/es: time stamp 2026-11-29 07:46:26 is 34005547.239618222 s in the future tar: ./usr/share/locale/be/LC_TIME: time stamp 2026-11-29 07:46:31 is 34005552.239602816 s in the future tar: ./usr/share/locale/sv/LC_TIME: time stamp 2026-11-29 07:46:31 is 34005552.239577933 s in the future tar: ./usr/share/locale/sv: time stamp 2026-11-29 07:46:26 is 34005547.239563303 s in the future tar: ./usr/share/locale/hu/LC_TIME: time stamp 2026-11-29 07:46:31 is 34005552.239549037 s in the future tar: ./usr/share/locale/hu: time stamp 2026-11-29 07:46:26 is 34005547.239536488 s in the future tar: ./usr/share/locale/tr/LC_TIME: time stamp 2026-11-29 07:46:31 is 34005552.239522559 s in the future tar: ./usr/share/locale/tr: time stamp 2026-11-29 07:46:26 is 34005547.239510473 s in the future tar: ./usr/share/locale/nb/LC_TIME: time stamp 2026-11-29 07:46:31 is 34005552.239496548 s in the future tar: ./usr/share/locale/nb: time stamp 2026-11-29 07:46:26 is 34005547.239484157 s in the future tar: ./usr/share/locale/et/LC_TIME: time stamp 2026-11-29 07:46:31 is 34005552.239471406 s in the future tar: ./usr/share/locale/et: time stamp 2026-11-29 07:46:26 is 34005547.239459074 s in the future tar: ./usr/share/locale/zh_CN/LC_TIME: time stamp 2026-11-29 07:46:31 is 34005552.239444944 s in the future tar: ./usr/share/locale/zh_CN: time stamp 2026-11-29 07:46:26 is 34005547.239432512 s in the future tar: ./usr/share/locale/nl/LC_TIME: time stamp 2026-11-29 07:46:31 is 34005552.239417791 s in the future tar: ./usr/share/locale/nl: time stamp 2026-11-29 07:46:26 is 34005547.239405345 s in the future tar: ./usr/share/locale/sr/LC_TIME: time stamp 2026-11-29 07:46:31 is 34005552.239390398 s in the future tar: ./usr/share/locale/sr: time stamp 2026-11-29 07:46:26 is 34005547.239377563 s in the future tar: ./usr/share/locale/pt/LC_TIME: time stamp 2026-11-29 07:46:31 is 34005552.239363083 s in the future tar: ./usr/share/locale/pt: time stamp 2026-11-29 07:46:26 is 34005547.239350578 s in the future tar: ./usr/share/locale/uk/LC_TIME: time stamp 2026-11-29 07:46:31 is 34005552.239336531 s in the future tar: ./usr/share/locale/uk: time stamp 2026-11-29 07:46:26 is 34005547.239324495 s in the future tar: ./usr/share/locale/id/LC_TIME: time stamp 2026-11-29 07:46:31 is 34005552.239309809 s in the future tar: ./usr/share/locale/id: time stamp 2026-11-29 07:46:26 is 34005547.239294083 s in the future tar: ./usr/share/locale/fi/LC_TIME: time stamp 2026-11-29 07:46:31 is 34005552.239273534 s in the future tar: ./usr/share/locale/fi: time stamp 2026-11-29 07:46:26 is 34005547.239258162 s in the future tar: ./usr/share/locale/fr/LC_TIME: time stamp 2026-11-29 07:46:31 is 34005552.239244306 s in the future tar: ./usr/share/locale/fr: time stamp 2026-11-29 07:46:26 is 34005547.239229797 s in the future tar: ./usr/share/locale: time stamp 2026-11-29 07:51:38 is 34005859.239211783 s in the future tar: ./usr/share/man/sl/man1: time stamp 2026-11-29 07:46:39 is 34005560.239193639 s in the future tar: ./usr/share/man/cs/man8: time stamp 2026-11-29 07:52:01 is 34005882.239165995 s in the future tar: ./usr/share/man/cs: time stamp 2026-11-29 07:51:34 is 34005855.23914973 s in the future tar: ./usr/share/man/it/man1: time stamp 2026-11-29 07:51:39 is 34005860.23913268 s in the future tar: ./usr/share/man/it/man8: time stamp 2026-11-30 23:31:29 is 34148650.239115686 s in the future tar: ./usr/share/man/it: time stamp 2026-11-29 07:46:27 is 34005548.239100777 s in the future tar: ./usr/share/man/ja/man1: time stamp 2026-11-29 07:51:34 is 34005855.239083747 s in the future tar: ./usr/share/man/ja/man8: time stamp 2026-11-30 23:31:29 is 34148650.239066936 s in the future tar: ./usr/share/man/ja: time stamp 2026-11-29 07:46:27 is 34005548.239051615 s in the future tar: ./usr/share/man/gl/man8: time stamp 2026-11-29 07:52:01 is 34005882.23903614 s in the future tar: ./usr/share/man/gl: time stamp 2026-11-29 07:51:39 is 34005860.239021425 s in the future tar: ./usr/share/man/pl/man1: time stamp 2026-11-29 07:51:34 is 34005855.239004352 s in the future tar: ./usr/share/man/pl/man8: time stamp 2026-11-30 23:31:29 is 34148650.238988136 s in the future tar: ./usr/share/man/pl: time stamp 2026-11-29 07:46:27 is 34005548.238972648 s in the future tar: ./usr/share/man/man1: time stamp 2026-12-02 23:31:24 is 34321445.238955459 s in the future tar: ./usr/share/man/man8: time stamp 2026-12-02 20:29:29 is 34310530.238938551 s in the future tar: ./usr/share/man/de/man1: time stamp 2026-11-30 23:31:29 is 34148650.238921299 s in the future tar: ./usr/share/man/de/man8: time stamp 2026-11-30 23:31:29 is 34148650.238907032 s in the future tar: ./usr/share/man/de: time stamp 2026-11-29 07:46:41 is 34005562.238891869 s in the future tar: ./usr/share/man/es/man1: time stamp 2026-11-29 07:52:00 is 34005881.238877286 s in the future tar: ./usr/share/man/es/man8: time stamp 2026-11-30 23:31:29 is 34148650.23886327 s in the future tar: ./usr/share/man/es: time stamp 2026-11-29 07:46:27 is 34005548.238850801 s in the future tar: ./usr/share/man/sv/man1: time stamp 2026-11-29 07:52:00 is 34005881.238836418 s in the future tar: ./usr/share/man/sv: time stamp 2026-11-29 07:46:47 is 34005568.238822973 s in the future tar: ./usr/share/man/man7: time stamp 2026-11-30 23:31:29 is 34148650.238808764 s in the future tar: ./usr/share/man/fi/man8: time stamp 2026-11-29 07:52:01 is 34005882.238796024 s in the future tar: ./usr/share/man/fi: time stamp 2026-11-29 07:51:39 is 34005860.238784044 s in the future tar: ./usr/share/man/fr/man1: time stamp 2026-11-30 23:31:29 is 34148650.238769516 s in the future tar: ./usr/share/man/fr/man8: time stamp 2026-11-30 23:31:29 is 34148650.238755681 s in the future tar: ./usr/share/man/fr: time stamp 2026-11-29 07:46:41 is 34005562.238743627 s in the future tar: ./usr/share/man: time stamp 2026-11-29 07:51:39 is 34005860.238731767 s in the future tar: ./usr/share: time stamp 2026-11-29 07:51:42 is 34005863.238718746 s in the future tar: ./usr: time stamp 2026-11-29 07:46:28 is 34005549.238706919 s in the future tar: ./etc/systemd/system/timers.target.wants: time stamp 2026-11-29 07:50:27 is 34005788.238682879 s in the future tar: ./etc/systemd/system: time stamp 2026-11-29 07:46:29 is 34005550.23867039 s in the future tar: ./etc/alternatives: time stamp 2026-11-29 07:52:01 is 34005882.238648171 s in the future I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [r-bioc-keggrest_1.46.0+dfsg-3.dsc] I: copying [./r-bioc-keggrest_1.46.0+dfsg.orig.tar.xz] I: copying [./r-bioc-keggrest_1.46.0+dfsg-3.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./r-bioc-keggrest_1.46.0+dfsg-3.dsc: no acceptable signature found dpkg-source: info: extracting r-bioc-keggrest in r-bioc-keggrest-1.46.0+dfsg dpkg-source: info: unpacking r-bioc-keggrest_1.46.0+dfsg.orig.tar.xz dpkg-source: info: unpacking r-bioc-keggrest_1.46.0+dfsg-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 1104334.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2032377/tmp/hooks/D01_modify_environment starting debug: Running on ionos15-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Oct 31 03:47 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/2032377/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/2032377/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.3.3(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DIRSTACK=() DISTRIBUTION=forky EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=3b57f8e38c9644f0a6d2f14206a24748 LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=2032377 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.IQgZXEkR/pbuilderrc_ZjYm --distribution forky --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.IQgZXEkR/b2 --logfile b2/build.log r-bioc-keggrest_1.46.0+dfsg-3.dsc' SUDO_GID=111 SUDO_HOME=/var/lib/jenkins SUDO_UID=106 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://213.165.73.152:3128 I: uname -a Linux i-capture-the-hostname 6.12.48+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.48-1 (2025-09-20) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2032377/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-cran-httr, r-cran-png, r-bioc-biostrings dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19869 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-r; however: Package dh-r is not installed. pbuilder-satisfydepends-dummy depends on r-base-dev; however: Package r-base-dev is not installed. pbuilder-satisfydepends-dummy depends on r-cran-httr; however: Package r-cran-httr is not installed. pbuilder-satisfydepends-dummy depends on r-cran-png; however: Package r-cran-png is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-biostrings; however: Package r-bioc-biostrings is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} dctrl-tools{a} debhelper{a} dh-autoreconf{a} dh-r{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} gettext{a} gettext-base{a} gfortran{a} gfortran-15{a} gfortran-15-x86-64-linux-gnu{a} gfortran-x86-64-linux-gnu{a} groff-base{a} icu-devtools{a} intltool-debian{a} libalgorithm-c3-perl{a} libarchive-zip-perl{a} libb-hooks-endofscope-perl{a} libb-hooks-op-check-perl{a} libblas-dev{a} libblas3{a} libbrotli1{a} libbz2-dev{a} libcairo2{a} libclass-c3-perl{a} libclass-load-perl{a} libclass-load-xs-perl{a} libclone-perl{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4t64{a} libdata-optlist-perl{a} libdatrie1{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libdevel-callchecker-perl{a} libdevel-globaldestruction-perl{a} libdevel-overloadinfo-perl{a} libdevel-stacktrace-perl{a} libdist-checkconflicts-perl{a} libdynaloader-functions-perl{a} libelf1t64{a} libencode-locale-perl{a} libeval-closure-perl{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran-15-dev{a} libgfortran5{a} libglib2.0-0t64{a} libgnutls30t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhttp-date-perl{a} libhttp-message-perl{a} libice6{a} libicu-dev{a} libicu76{a} libidn2-0{a} libio-html-perl{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} libldap2{a} liblerc4{a} liblwp-mediatypes-perl{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libmodule-implementation-perl{a} libmodule-runtime-conflicts-perl{a} libmodule-runtime-perl{a} libmoose-perl{a} libmro-compat-perl{a} libnamespace-clean-perl{a} libncurses-dev{a} libncurses6{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libngtcp2-crypto-ossl0{a} libp11-kit0{a} libpackage-deprecationmanager-perl{a} libpackage-stash-perl{a} libpackage-stash-xs-perl{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper2{a} libparams-classify-perl{a} libparams-util-perl{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpipeline1{a} libpixman-1-0{a} libpkgconf3{a} libpng-dev{a} libpng16-16t64{a} libproc2-0{a} libpsl5t64{a} libreadline-dev{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libsm6{a} libssh2-1t64{a} libsub-exporter-perl{a} libsub-exporter-progressive-perl{a} libsub-identify-perl{a} libsub-install-perl{a} libsub-name-perl{a} libswitch-perl{a} libtasn1-6{a} libtcl8.6{a} libtext-charwidth-perl{a} libtext-wrapi18n-perl{a} libthai-data{a} libthai0{a} libtiff6{a} libtimedate-perl{a} libtirpc-common{a} libtirpc-dev{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} libunistring5{a} liburi-perl{a} libvariable-magic-perl{a} libwebp7{a} libwww-curl-perl{a} libwww-curl-simple-perl{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2-16{a} libxmuu1{a} libxrender1{a} libxss1{a} libxt6t64{a} libzstd-dev{a} m4{a} man-db{a} openssl{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} r-base-core{a} r-base-dev{a} r-bioc-biocgenerics{a} r-bioc-biostrings{a} r-bioc-genomeinfodb{a} r-bioc-genomeinfodbdata{a} r-bioc-iranges{a} r-bioc-s4vectors{a} r-bioc-ucsc.utils{a} r-bioc-xvector{a} r-bioc-zlibbioc{a} r-cran-askpass{a} r-cran-crayon{a} r-cran-curl{a} r-cran-httr{a} r-cran-jsonlite{a} r-cran-mime{a} r-cran-openssl{a} r-cran-png{a} r-cran-r6{a} r-cran-sys{a} readline-common{a} sensible-utils{a} tzdata{a} ucf{a} unzip{a} x11-common{a} xauth{a} xdg-utils{a} zip{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc cme curl devscripts git-buildpackage krb5-locales libarchive-cpio-perl libclass-c3-xs-perl libdevel-lexalias-perl libdevel-partialdump-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libio-compress-brotli-perl libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools libsasl2-modules libx11-protocol-perl linux-sysctl-defaults lynx psmisc publicsuffix r-cran-covr r-cran-digest r-cran-httpuv r-cran-jpeg r-cran-knitr r-cran-lobstr r-cran-mockery r-cran-r.rsp r-cran-readr r-cran-rmarkdown r-cran-rstudioapi r-cran-sf r-cran-sodium r-cran-spelling r-cran-testthat r-cran-vctrs r-cran-withr r-cran-xml2 r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 216 newly installed, 0 to remove and 0 not upgraded. Need to get 150 MB of archives. After unpacking 394 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian forky/main amd64 libexpat1 amd64 2.7.3-1 [112 kB] Get: 2 http://deb.debian.org/debian forky/main amd64 tzdata all 2025b-5 [260 kB] Get: 3 http://deb.debian.org/debian forky/main amd64 libproc2-0 amd64 2:4.0.4-9 [65.6 kB] Get: 4 http://deb.debian.org/debian forky/main amd64 procps amd64 2:4.0.4-9 [882 kB] Get: 5 http://deb.debian.org/debian forky/main amd64 readline-common all 8.3-3 [74.8 kB] Get: 6 http://deb.debian.org/debian forky/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get: 7 http://deb.debian.org/debian forky/main amd64 openssl amd64 3.5.4-1 [1496 kB] Get: 8 http://deb.debian.org/debian forky/main amd64 ca-certificates all 20250419 [162 kB] Get: 9 http://deb.debian.org/debian forky/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 10 http://deb.debian.org/debian forky/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 11 http://deb.debian.org/debian forky/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 12 http://deb.debian.org/debian forky/main amd64 gettext-base amd64 0.23.1-2+b1 [244 kB] Get: 13 http://deb.debian.org/debian forky/main amd64 libuchardet0 amd64 0.0.8-2 [68.5 kB] Get: 14 http://deb.debian.org/debian forky/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 15 http://deb.debian.org/debian forky/main amd64 bsdextrautils amd64 2.41.2-4 [98.5 kB] Get: 16 http://deb.debian.org/debian forky/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 17 http://deb.debian.org/debian forky/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 18 http://deb.debian.org/debian forky/main amd64 libtext-charwidth-perl amd64 0.04-11+b4 [9476 B] Get: 19 http://deb.debian.org/debian forky/main amd64 libtext-wrapi18n-perl all 0.06-10 [8808 B] Get: 20 http://deb.debian.org/debian forky/main amd64 ucf all 3.0052 [43.3 kB] Get: 21 http://deb.debian.org/debian forky/main amd64 m4 amd64 1.4.20-2 [325 kB] Get: 22 http://deb.debian.org/debian forky/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 23 http://deb.debian.org/debian forky/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 24 http://deb.debian.org/debian forky/main amd64 automake all 1:1.18.1-2 [877 kB] Get: 25 http://deb.debian.org/debian forky/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 26 http://deb.debian.org/debian forky/main amd64 dctrl-tools amd64 2.24-3+b1 [104 kB] Get: 27 http://deb.debian.org/debian forky/main amd64 libdebhelper-perl all 13.28 [92.4 kB] Get: 28 http://deb.debian.org/debian forky/main amd64 libtool all 2.5.4-7 [540 kB] Get: 29 http://deb.debian.org/debian forky/main amd64 dh-autoreconf all 21 [12.2 kB] Get: 30 http://deb.debian.org/debian forky/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 31 http://deb.debian.org/debian forky/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 32 http://deb.debian.org/debian forky/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 33 http://deb.debian.org/debian forky/main amd64 libelf1t64 amd64 0.193-3 [192 kB] Get: 34 http://deb.debian.org/debian forky/main amd64 dwz amd64 0.16-2 [108 kB] Get: 35 http://deb.debian.org/debian forky/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 36 http://deb.debian.org/debian forky/main amd64 libxml2-16 amd64 2.14.6+dfsg-0.1 [651 kB] Get: 37 http://deb.debian.org/debian forky/main amd64 gettext amd64 0.23.1-2+b1 [1680 kB] Get: 38 http://deb.debian.org/debian forky/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 39 http://deb.debian.org/debian forky/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 40 http://deb.debian.org/debian forky/main amd64 debhelper all 13.28 [941 kB] Get: 41 http://deb.debian.org/debian forky/main amd64 zip amd64 3.0-15 [235 kB] Get: 42 http://deb.debian.org/debian forky/main amd64 unzip amd64 6.0-29 [173 kB] Get: 43 http://deb.debian.org/debian forky/main amd64 libpaper2 amd64 2.2.5-0.3+b2 [16.7 kB] Get: 44 http://deb.debian.org/debian forky/main amd64 libpaper-utils amd64 2.2.5-0.3+b2 [16.5 kB] Get: 45 http://deb.debian.org/debian forky/main amd64 xdg-utils all 1.2.1-2 [75.8 kB] Get: 46 http://deb.debian.org/debian forky/main amd64 libblas3 amd64 3.12.1-7 [215 kB] Get: 47 http://deb.debian.org/debian forky/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get: 48 http://deb.debian.org/debian forky/main amd64 libpng16-16t64 amd64 1.6.50-1 [282 kB] Get: 49 http://deb.debian.org/debian forky/main amd64 libfreetype6 amd64 2.13.3+dfsg-1 [452 kB] Get: 50 http://deb.debian.org/debian forky/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 51 http://deb.debian.org/debian forky/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 52 http://deb.debian.org/debian forky/main amd64 fontconfig-config amd64 2.15.0-2.4 [318 kB] Get: 53 http://deb.debian.org/debian forky/main amd64 libfontconfig1 amd64 2.15.0-2.4 [401 kB] Get: 54 http://deb.debian.org/debian forky/main amd64 libpixman-1-0 amd64 0.46.4-1 [259 kB] Get: 55 http://deb.debian.org/debian forky/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB] Get: 56 http://deb.debian.org/debian forky/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB] Get: 57 http://deb.debian.org/debian forky/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB] Get: 58 http://deb.debian.org/debian forky/main amd64 libx11-data all 2:1.8.12-1 [343 kB] Get: 59 http://deb.debian.org/debian forky/main amd64 libx11-6 amd64 2:1.8.12-1 [815 kB] Get: 60 http://deb.debian.org/debian forky/main amd64 libxcb-render0 amd64 1.17.0-2+b1 [115 kB] Get: 61 http://deb.debian.org/debian forky/main amd64 libxcb-shm0 amd64 1.17.0-2+b1 [105 kB] Get: 62 http://deb.debian.org/debian forky/main amd64 libxext6 amd64 2:1.3.4-1+b3 [50.4 kB] Get: 63 http://deb.debian.org/debian forky/main amd64 libxrender1 amd64 1:0.9.12-1 [27.9 kB] Get: 64 http://deb.debian.org/debian forky/main amd64 libcairo2 amd64 1.18.4-1+b1 [538 kB] Get: 65 http://deb.debian.org/debian forky/main amd64 libnghttp3-9 amd64 1.12.0-1 [68.4 kB] Get: 66 http://deb.debian.org/debian forky/main amd64 libngtcp2-16 amd64 1.16.0-1 [136 kB] Get: 67 http://deb.debian.org/debian forky/main amd64 libkrb5support0 amd64 1.21.3-5 [33.0 kB] Get: 68 http://deb.debian.org/debian forky/main amd64 libcom-err2 amd64 1.47.2-3+b3 [25.0 kB] Get: 69 http://deb.debian.org/debian forky/main amd64 libk5crypto3 amd64 1.21.3-5 [81.5 kB] Get: 70 http://deb.debian.org/debian forky/main amd64 libkeyutils1 amd64 1.6.3-6 [9456 B] Get: 71 http://deb.debian.org/debian forky/main amd64 libkrb5-3 amd64 1.21.3-5 [326 kB] Get: 72 http://deb.debian.org/debian forky/main amd64 libgssapi-krb5-2 amd64 1.21.3-5 [138 kB] Get: 73 http://deb.debian.org/debian forky/main amd64 libidn2-0 amd64 2.3.8-4 [110 kB] Get: 74 http://deb.debian.org/debian forky/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-10 [19.8 kB] Get: 75 http://deb.debian.org/debian forky/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-10 [57.8 kB] Get: 76 http://deb.debian.org/debian forky/main amd64 libldap2 amd64 2.6.10+dfsg-1 [194 kB] Get: 77 http://deb.debian.org/debian forky/main amd64 libnghttp2-14 amd64 1.64.0-1.1+b1 [76.2 kB] Get: 78 http://deb.debian.org/debian forky/main amd64 libngtcp2-crypto-ossl0 amd64 1.16.0-1 [27.5 kB] Get: 79 http://deb.debian.org/debian forky/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 80 http://deb.debian.org/debian forky/main amd64 libffi8 amd64 3.5.2-2 [25.5 kB] Get: 81 http://deb.debian.org/debian forky/main amd64 libp11-kit0 amd64 0.25.9-2 [443 kB] Get: 82 http://deb.debian.org/debian forky/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get: 83 http://deb.debian.org/debian forky/main amd64 libgnutls30t64 amd64 3.8.10-3 [1493 kB] Get: 84 http://deb.debian.org/debian forky/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-3 [58.3 kB] Get: 85 http://deb.debian.org/debian forky/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 86 http://deb.debian.org/debian forky/main amd64 libcurl4t64 amd64 8.17.0~rc2-1 [408 kB] Get: 87 http://deb.debian.org/debian forky/main amd64 libdeflate0 amd64 1.23-2 [47.3 kB] Get: 88 http://deb.debian.org/debian forky/main amd64 libglib2.0-0t64 amd64 2.86.1-1 [1546 kB] Get: 89 http://deb.debian.org/debian forky/main amd64 libicu76 amd64 76.1-4 [9722 kB] Get: 90 http://deb.debian.org/debian forky/main amd64 libjpeg62-turbo amd64 1:2.1.5-4 [168 kB] Get: 91 http://deb.debian.org/debian forky/main amd64 libgfortran5 amd64 15.2.0-7 [862 kB] Get: 92 http://deb.debian.org/debian forky/main amd64 liblapack3 amd64 3.12.1-7 [2785 kB] Get: 93 http://deb.debian.org/debian forky/main amd64 fontconfig amd64 2.15.0-2.4 [464 kB] Get: 94 http://deb.debian.org/debian forky/main amd64 libfribidi0 amd64 1.0.16-3 [26.6 kB] Get: 95 http://deb.debian.org/debian forky/main amd64 libgraphite2-3 amd64 1.3.14-11 [76.7 kB] Get: 96 http://deb.debian.org/debian forky/main amd64 libharfbuzz0b amd64 12.1.0-1 [530 kB] Get: 97 http://deb.debian.org/debian forky/main amd64 libthai-data all 0.1.29-2 [168 kB] Get: 98 http://deb.debian.org/debian forky/main amd64 libdatrie1 amd64 0.2.13-4 [38.0 kB] Get: 99 http://deb.debian.org/debian forky/main amd64 libthai0 amd64 0.1.29-2+b1 [49.4 kB] Get: 100 http://deb.debian.org/debian forky/main amd64 libpango-1.0-0 amd64 1.56.3-2 [239 kB] Get: 101 http://deb.debian.org/debian forky/main amd64 libpangoft2-1.0-0 amd64 1.56.3-2 [62.0 kB] Get: 102 http://deb.debian.org/debian forky/main amd64 libpangocairo-1.0-0 amd64 1.56.3-2 [38.1 kB] Get: 103 http://deb.debian.org/debian forky/main amd64 libreadline8t64 amd64 8.3-3 [191 kB] Get: 104 http://deb.debian.org/debian forky/main amd64 libtcl8.6 amd64 8.6.17+dfsg-1 [1041 kB] Get: 105 http://deb.debian.org/debian forky/main amd64 libjbig0 amd64 2.1-6.1+b2 [32.1 kB] Get: 106 http://deb.debian.org/debian forky/main amd64 liblerc4 amd64 4.0.0+ds-5 [183 kB] Get: 107 http://deb.debian.org/debian forky/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [116 kB] Get: 108 http://deb.debian.org/debian forky/main amd64 libwebp7 amd64 1.5.0-0.1 [318 kB] Get: 109 http://deb.debian.org/debian forky/main amd64 libtiff6 amd64 4.7.1-1 [361 kB] Get: 110 http://deb.debian.org/debian forky/main amd64 libtirpc-common all 1.3.6+ds-1 [11.0 kB] Get: 111 http://deb.debian.org/debian forky/main amd64 libtirpc3t64 amd64 1.3.6+ds-1 [83.3 kB] Get: 112 http://deb.debian.org/debian forky/main amd64 libxft2 amd64 2.3.6-1+b4 [54.5 kB] Get: 113 http://deb.debian.org/debian forky/main amd64 x11-common all 1:7.7+26 [217 kB] Get: 114 http://deb.debian.org/debian forky/main amd64 libxss1 amd64 1:1.2.3-1+b3 [17.0 kB] Get: 115 http://deb.debian.org/debian forky/main amd64 libtk8.6 amd64 8.6.17-1 [794 kB] Get: 116 http://deb.debian.org/debian forky/main amd64 libice6 amd64 2:1.1.1-1 [65.4 kB] Get: 117 http://deb.debian.org/debian forky/main amd64 libsm6 amd64 2:1.2.6-1 [37.3 kB] Get: 118 http://deb.debian.org/debian forky/main amd64 libxt6t64 amd64 1:1.2.1-1.3 [208 kB] Get: 119 http://deb.debian.org/debian forky/main amd64 r-base-core amd64 4.5.1-1 [28.7 MB] Get: 120 http://deb.debian.org/debian forky/main amd64 libgfortran-15-dev amd64 15.2.0-7 [886 kB] Get: 121 http://deb.debian.org/debian forky/main amd64 gfortran-15-x86-64-linux-gnu amd64 15.2.0-7 [12.7 MB] Get: 122 http://deb.debian.org/debian forky/main amd64 gfortran-15 amd64 15.2.0-7 [18.0 kB] Get: 123 http://deb.debian.org/debian forky/main amd64 gfortran-x86-64-linux-gnu amd64 4:15.2.0-4 [1276 B] Get: 124 http://deb.debian.org/debian forky/main amd64 gfortran amd64 4:15.2.0-4 [1436 B] Get: 125 http://deb.debian.org/debian forky/main amd64 libblas-dev amd64 3.12.1-7 [229 kB] Get: 126 http://deb.debian.org/debian forky/main amd64 liblapack-dev amd64 3.12.1-7 [5894 kB] Get: 127 http://deb.debian.org/debian forky/main amd64 libncurses6 amd64 6.5+20250216-2 [105 kB] Get: 128 http://deb.debian.org/debian forky/main amd64 libncurses-dev amd64 6.5+20250216-2 [353 kB] Get: 129 http://deb.debian.org/debian forky/main amd64 libreadline-dev amd64 8.3-3 [175 kB] Get: 130 http://deb.debian.org/debian forky/main amd64 libjpeg62-turbo-dev amd64 1:2.1.5-4 [292 kB] Get: 131 http://deb.debian.org/debian forky/main amd64 libjpeg-dev amd64 1:2.1.5-4 [72.2 kB] Get: 132 http://deb.debian.org/debian forky/main amd64 libpcre2-16-0 amd64 10.46-1 [281 kB] Get: 133 http://deb.debian.org/debian forky/main amd64 libpcre2-32-0 amd64 10.46-1 [268 kB] Get: 134 http://deb.debian.org/debian forky/main amd64 libpcre2-posix3 amd64 10.46-1 [63.9 kB] Get: 135 http://deb.debian.org/debian forky/main amd64 libpcre2-dev amd64 10.46-1 [853 kB] Get: 136 http://deb.debian.org/debian forky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Get: 137 http://deb.debian.org/debian forky/main amd64 libpng-dev amd64 1.6.50-1 [366 kB] Get: 138 http://deb.debian.org/debian forky/main amd64 libbz2-dev amd64 1.0.8-6 [31.4 kB] Get: 139 http://deb.debian.org/debian forky/main amd64 liblzma-dev amd64 5.8.1-2 [349 kB] Get: 140 http://deb.debian.org/debian forky/main amd64 icu-devtools amd64 76.1-4 [215 kB] Get: 141 http://deb.debian.org/debian forky/main amd64 libicu-dev amd64 76.1-4 [10.8 MB] Get: 142 http://deb.debian.org/debian forky/main amd64 libxmuu1 amd64 2:1.1.3-3+b4 [21.9 kB] Get: 143 http://deb.debian.org/debian forky/main amd64 xauth amd64 1:1.1.2-1.1 [35.9 kB] Get: 144 http://deb.debian.org/debian forky/main amd64 libpkgconf3 amd64 1.8.1-4 [36.4 kB] Get: 145 http://deb.debian.org/debian forky/main amd64 pkgconf-bin amd64 1.8.1-4 [30.2 kB] Get: 146 http://deb.debian.org/debian forky/main amd64 pkgconf amd64 1.8.1-4 [26.2 kB] Get: 147 http://deb.debian.org/debian forky/main amd64 libtirpc-dev amd64 1.3.6+ds-1 [191 kB] Get: 148 http://deb.debian.org/debian forky/main amd64 libdeflate-dev amd64 1.23-2 [55.9 kB] Get: 149 http://deb.debian.org/debian forky/main amd64 libzstd-dev amd64 1.5.7+dfsg-2 [375 kB] Get: 150 http://deb.debian.org/debian forky/main amd64 r-base-dev all 4.5.1-1 [4360 B] Get: 151 http://deb.debian.org/debian forky/main amd64 libfile-which-perl all 1.27-2 [15.1 kB] Get: 152 http://deb.debian.org/debian forky/main amd64 libswitch-perl all 2.17-3 [20.3 kB] Get: 153 http://deb.debian.org/debian forky/main amd64 libclone-perl amd64 0.47-1+b1 [13.9 kB] Get: 154 http://deb.debian.org/debian forky/main amd64 libencode-locale-perl all 1.05-3 [12.9 kB] Get: 155 http://deb.debian.org/debian forky/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB] Get: 156 http://deb.debian.org/debian forky/main amd64 libhttp-date-perl all 6.06-1 [10.7 kB] Get: 157 http://deb.debian.org/debian forky/main amd64 libio-html-perl all 1.004-3 [16.2 kB] Get: 158 http://deb.debian.org/debian forky/main amd64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get: 159 http://deb.debian.org/debian forky/main amd64 liburi-perl all 5.30-1 [105 kB] Get: 160 http://deb.debian.org/debian forky/main amd64 libhttp-message-perl all 7.01-1 [80.0 kB] Get: 161 http://deb.debian.org/debian forky/main amd64 libparams-util-perl amd64 1.102-3+b1 [24.4 kB] Get: 162 http://deb.debian.org/debian forky/main amd64 libsub-install-perl all 0.929-1 [10.5 kB] Get: 163 http://deb.debian.org/debian forky/main amd64 libdata-optlist-perl all 0.114-1 [10.6 kB] Get: 164 http://deb.debian.org/debian forky/main amd64 libb-hooks-op-check-perl amd64 0.22-3+b2 [10.6 kB] Get: 165 http://deb.debian.org/debian forky/main amd64 libdynaloader-functions-perl all 0.004-2 [12.2 kB] Get: 166 http://deb.debian.org/debian forky/main amd64 libdevel-callchecker-perl amd64 0.009-2 [15.6 kB] Get: 167 http://deb.debian.org/debian forky/main amd64 libparams-classify-perl amd64 0.015-2+b4 [22.5 kB] Get: 168 http://deb.debian.org/debian forky/main amd64 libmodule-runtime-perl all 0.018-1 [17.8 kB] Get: 169 http://deb.debian.org/debian forky/main amd64 libtry-tiny-perl all 0.32-1 [22.9 kB] Get: 170 http://deb.debian.org/debian forky/main amd64 libmodule-implementation-perl all 0.09-2 [12.6 kB] Get: 171 http://deb.debian.org/debian forky/main amd64 libpackage-stash-perl all 0.40-1 [22.0 kB] Get: 172 http://deb.debian.org/debian forky/main amd64 libclass-load-perl all 0.25-2 [15.3 kB] Get: 173 http://deb.debian.org/debian forky/main amd64 libclass-load-xs-perl amd64 0.10-2+b4 [14.2 kB] Get: 174 http://deb.debian.org/debian forky/main amd64 libsub-exporter-progressive-perl all 0.001013-3 [7496 B] Get: 175 http://deb.debian.org/debian forky/main amd64 libdevel-globaldestruction-perl all 0.14-4 [7144 B] Get: 176 http://deb.debian.org/debian forky/main amd64 libalgorithm-c3-perl all 0.11-2 [10.8 kB] Get: 177 http://deb.debian.org/debian forky/main amd64 libclass-c3-perl all 0.35-2 [21.0 kB] Get: 178 http://deb.debian.org/debian forky/main amd64 libmro-compat-perl all 0.15-2 [11.8 kB] Get: 179 http://deb.debian.org/debian forky/main amd64 libdevel-overloadinfo-perl all 0.008-1 [7748 B] Get: 180 http://deb.debian.org/debian forky/main amd64 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB] Get: 181 http://deb.debian.org/debian forky/main amd64 libsub-exporter-perl all 0.990-1 [50.6 kB] Get: 182 http://deb.debian.org/debian forky/main amd64 libeval-closure-perl all 0.14-3 [11.2 kB] Get: 183 http://deb.debian.org/debian forky/main amd64 libdist-checkconflicts-perl all 0.11-2 [10.5 kB] Get: 184 http://deb.debian.org/debian forky/main amd64 libmodule-runtime-conflicts-perl all 0.003-2 [7356 B] Get: 185 http://deb.debian.org/debian forky/main amd64 libpackage-deprecationmanager-perl all 0.18-1 [17.6 kB] Get: 186 http://deb.debian.org/debian forky/main amd64 libpackage-stash-xs-perl amd64 0.30-1+b4 [20.9 kB] Get: 187 http://deb.debian.org/debian forky/main amd64 libmoose-perl amd64 2.4000-1 [767 kB] Get: 188 http://deb.debian.org/debian forky/main amd64 libvariable-magic-perl amd64 0.64-1+b1 [44.9 kB] Get: 189 http://deb.debian.org/debian forky/main amd64 libb-hooks-endofscope-perl all 0.28-2 [17.6 kB] Get: 190 http://deb.debian.org/debian forky/main amd64 libsub-identify-perl amd64 0.14-3+b3 [11.3 kB] Get: 191 http://deb.debian.org/debian forky/main amd64 libsub-name-perl amd64 0.28-1 [12.2 kB] Get: 192 http://deb.debian.org/debian forky/main amd64 libnamespace-clean-perl all 0.27-2 [17.8 kB] Get: 193 http://deb.debian.org/debian forky/main amd64 libngtcp2-crypto-gnutls8 amd64 1.16.0-1 [25.2 kB] Get: 194 http://deb.debian.org/debian forky/main amd64 libcurl3t64-gnutls amd64 8.17.0~rc2-1 [400 kB] Get: 195 http://deb.debian.org/debian forky/main amd64 libwww-curl-perl amd64 4.17-12 [58.4 kB] Get: 196 http://deb.debian.org/debian forky/main amd64 libwww-curl-simple-perl all 0.100191-3 [12.6 kB] Get: 197 http://deb.debian.org/debian forky/main amd64 dh-r all 20250812 [42.6 kB] Get: 198 http://deb.debian.org/debian forky/main amd64 r-bioc-biocgenerics all 0.52.0-2 [627 kB] Get: 199 http://deb.debian.org/debian forky/main amd64 r-bioc-s4vectors amd64 0.44.0+dfsg-2 [2061 kB] Get: 200 http://deb.debian.org/debian forky/main amd64 r-bioc-iranges amd64 2.40.1-3 [2310 kB] Get: 201 http://deb.debian.org/debian forky/main amd64 r-bioc-zlibbioc all 1.52.0+dfsg-2 [9968 B] Get: 202 http://deb.debian.org/debian forky/main amd64 r-bioc-xvector amd64 0.46.0-2 [620 kB] Get: 203 http://deb.debian.org/debian forky/main amd64 r-cran-curl amd64 7.0.0+dfsg-1 [203 kB] Get: 204 http://deb.debian.org/debian forky/main amd64 r-cran-jsonlite amd64 1.9.1+dfsg-1 [445 kB] Get: 205 http://deb.debian.org/debian forky/main amd64 r-cran-mime amd64 0.12-2 [35.6 kB] Get: 206 http://deb.debian.org/debian forky/main amd64 r-cran-sys amd64 3.4.3-1 [44.4 kB] Get: 207 http://deb.debian.org/debian forky/main amd64 r-cran-askpass amd64 1.2.1-1 [24.2 kB] Get: 208 http://deb.debian.org/debian forky/main amd64 r-cran-openssl amd64 2.3.2+dfsg-1 [402 kB] Get: 209 http://deb.debian.org/debian forky/main amd64 r-cran-r6 all 2.6.1-1 [106 kB] Get: 210 http://deb.debian.org/debian forky/main amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] Get: 211 http://deb.debian.org/debian forky/main amd64 r-bioc-ucsc.utils all 1.2.0+ds-2 [77.3 kB] Get: 212 http://deb.debian.org/debian forky/main amd64 r-bioc-genomeinfodbdata all 1.2.13-2 [12.9 MB] Get: 213 http://deb.debian.org/debian forky/main amd64 r-bioc-genomeinfodb all 1.42.3+dfsg-1 [3848 kB] Get: 214 http://deb.debian.org/debian forky/main amd64 r-cran-crayon all 1.5.3-1 [165 kB] Get: 215 http://deb.debian.org/debian forky/main amd64 r-bioc-biostrings amd64 2.74.1+dfsg-2 [13.4 MB] Get: 216 http://deb.debian.org/debian forky/main amd64 r-cran-png amd64 0.1-8-1+b1 [41.5 kB] Fetched 150 MB in 8s (18.9 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19869 files and directories currently installed.) Preparing to unpack .../000-libexpat1_2.7.3-1_amd64.deb ... Unpacking libexpat1:amd64 (2.7.3-1) ... Selecting previously unselected package tzdata. Preparing to unpack .../001-tzdata_2025b-5_all.deb ... Unpacking tzdata (2025b-5) ... Selecting previously unselected package libproc2-0:amd64. Preparing to unpack .../002-libproc2-0_2%3a4.0.4-9_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.4-9) ... Selecting previously unselected package procps. Preparing to unpack .../003-procps_2%3a4.0.4-9_amd64.deb ... Unpacking procps (2:4.0.4-9) ... Selecting previously unselected package readline-common. Preparing to unpack .../004-readline-common_8.3-3_all.deb ... Unpacking readline-common (8.3-3) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../005-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package openssl. Preparing to unpack .../006-openssl_3.5.4-1_amd64.deb ... Unpacking openssl (3.5.4-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../007-ca-certificates_20250419_all.deb ... Unpacking ca-certificates (20250419) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../008-libmagic-mgc_1%3a5.46-5_amd64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../009-libmagic1t64_1%3a5.46-5_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../010-file_1%3a5.46-5_amd64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../011-gettext-base_0.23.1-2+b1_amd64.deb ... Unpacking gettext-base (0.23.1-2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../012-libuchardet0_0.0.8-2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-2) ... Selecting previously unselected package groff-base. Preparing to unpack .../013-groff-base_1.23.0-9_amd64.deb ... Unpacking groff-base (1.23.0-9) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../014-bsdextrautils_2.41.2-4_amd64.deb ... Unpacking bsdextrautils (2.41.2-4) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../015-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../016-man-db_2.13.1-1_amd64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package libtext-charwidth-perl:amd64. Preparing to unpack .../017-libtext-charwidth-perl_0.04-11+b4_amd64.deb ... Unpacking libtext-charwidth-perl:amd64 (0.04-11+b4) ... Selecting previously unselected package libtext-wrapi18n-perl. Preparing to unpack .../018-libtext-wrapi18n-perl_0.06-10_all.deb ... Unpacking libtext-wrapi18n-perl (0.06-10) ... Selecting previously unselected package ucf. Preparing to unpack .../019-ucf_3.0052_all.deb ... Moving old data out of the way Unpacking ucf (3.0052) ... Selecting previously unselected package m4. Preparing to unpack .../020-m4_1.4.20-2_amd64.deb ... Unpacking m4 (1.4.20-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../021-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../022-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../023-automake_1%3a1.18.1-2_all.deb ... Unpacking automake (1:1.18.1-2) ... Selecting previously unselected package autopoint. Preparing to unpack .../024-autopoint_0.23.1-2_all.deb ... Unpacking autopoint (0.23.1-2) ... Selecting previously unselected package dctrl-tools. Preparing to unpack .../025-dctrl-tools_2.24-3+b1_amd64.deb ... Unpacking dctrl-tools (2.24-3+b1) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../026-libdebhelper-perl_13.28_all.deb ... Unpacking libdebhelper-perl (13.28) ... Selecting previously unselected package libtool. Preparing to unpack .../027-libtool_2.5.4-7_all.deb ... Unpacking libtool (2.5.4-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../028-dh-autoreconf_21_all.deb ... Unpacking dh-autoreconf (21) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../029-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../030-libfile-stripnondeterminism-perl_1.15.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.15.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../031-dh-strip-nondeterminism_1.15.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.15.0-1) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../032-libelf1t64_0.193-3_amd64.deb ... Unpacking libelf1t64:amd64 (0.193-3) ... 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Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.3-3) ... Selecting previously unselected package libtcl8.6:amd64. Preparing to unpack .../103-libtcl8.6_8.6.17+dfsg-1_amd64.deb ... Unpacking libtcl8.6:amd64 (8.6.17+dfsg-1) ... Selecting previously unselected package libjbig0:amd64. Preparing to unpack .../104-libjbig0_2.1-6.1+b2_amd64.deb ... Unpacking libjbig0:amd64 (2.1-6.1+b2) ... Selecting previously unselected package liblerc4:amd64. 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Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:amd64 (1.3.6+ds-1) ... Selecting previously unselected package libxft2:amd64. Preparing to unpack .../111-libxft2_2.3.6-1+b4_amd64.deb ... Unpacking libxft2:amd64 (2.3.6-1+b4) ... Selecting previously unselected package x11-common. Preparing to unpack .../112-x11-common_1%3a7.7+26_all.deb ... Unpacking x11-common (1:7.7+26) ... Selecting previously unselected package libxss1:amd64. Preparing to unpack .../113-libxss1_1%3a1.2.3-1+b3_amd64.deb ... Unpacking libxss1:amd64 (1:1.2.3-1+b3) ... Selecting previously unselected package libtk8.6:amd64. Preparing to unpack .../114-libtk8.6_8.6.17-1_amd64.deb ... Unpacking libtk8.6:amd64 (8.6.17-1) ... Selecting previously unselected package libice6:amd64. 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Setting up libxml2-16:amd64 (2.14.6+dfsg-0.1) ... Setting up libtirpc-common (1.3.6+ds-1) ... Setting up unzip (6.0-29) ... Setting up libdebhelper-perl (13.28) ... Setting up libbrotli1:amd64 (1.1.0-2+b7) ... Setting up liblwp-mediatypes-perl (6.04-2) ... Setting up libmagic1t64:amd64 (1:5.46-5) ... Setting up x11-common (1:7.7+26) ... invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libtry-tiny-perl (0.32-1) ... Setting up libnghttp2-14:amd64 (1.64.0-1.1+b1) ... Setting up libdeflate0:amd64 (1.23-2) ... Setting up gettext-base (0.23.1-2+b1) ... Setting up m4 (1.4.20-2) ... Setting up libencode-locale-perl (1.05-3) ... Setting up libxcb-shm0:amd64 (1.17.0-2+b1) ... Setting up libcom-err2:amd64 (1.47.2-3+b3) ... Setting up file (1:5.46-5) ... Setting up libtext-wrapi18n-perl (0.06-10) ... Setting up libjbig0:amd64 (2.1-6.1+b2) ... Setting up libpcre2-16-0:amd64 (10.46-1) ... Setting up libsub-install-perl (0.929-1) ... Setting up libelf1t64:amd64 (0.193-3) ... Setting up libkrb5support0:amd64 (1.21.3-5) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-10) ... Setting up tzdata (2025b-5) ... Current default time zone: 'Etc/UTC' Local time is now: Fri Oct 31 03:49:51 UTC 2025. Universal Time is now: Fri Oct 31 03:49:51 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up zip (3.0-15) ... Setting up libpackage-stash-xs-perl:amd64 (0.30-1+b4) ... Setting up autotools-dev (20240727.1) ... Setting up libpcre2-32-0:amd64 (10.46-1) ... Setting up libblas3:amd64 (3.12.1-7) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libpkgconf3:amd64 (1.8.1-4) ... Setting up libalgorithm-c3-perl (0.11-2) ... Setting up libjpeg62-turbo:amd64 (1:2.1.5-4) ... Setting up libswitch-perl (2.17-3) ... 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Setting up libssh2-1t64:amd64 (1.11.1-1) ... Setting up openssl (3.5.4-1) ... Setting up libdeflate-dev:amd64 (1.23-2) ... Setting up readline-common (8.3-3) ... Setting up xdg-utils (1.2.1-2) ... update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode Setting up libldap2:amd64 (2.6.10+dfsg-1) ... Setting up liburi-perl (5.30-1) ... Setting up libxmuu1:amd64 (2:1.1.3-3+b4) ... Setting up libblas-dev:amd64 (3.12.1-7) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode Setting up dctrl-tools (2.24-3+b1) ... Setting up libbz2-dev:amd64 (1.0.8-6) ... Setting up automake (1:1.18.1-2) ... update-alternatives: using /usr/bin/automake-1.18 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up libice6:amd64 (2:1.1.1-1) ... Setting up libhttp-date-perl (6.06-1) ... Setting up liblapack3:amd64 (3.12.1-7) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libncurses-dev:amd64 (6.5+20250216-2) ... Setting up gettext (0.23.1-2+b1) ... Setting up libpcre2-dev:amd64 (10.46-1) ... Setting up libxrender1:amd64 (1:0.9.12-1) ... Setting up libtool (2.5.4-7) ... Setting up fontconfig-config (2.15.0-2.4) ... Setting up libpng-dev:amd64 (1.6.50-1) ... Setting up libjpeg-dev:amd64 (1:2.1.5-4) ... Setting up libxext6:amd64 (2:1.3.4-1+b3) ... Setting up libidn2-0:amd64 (2.3.8-4) ... Setting up libpaper-utils (2.2.5-0.3+b2) ... Setting up libclass-c3-perl (0.35-2) ... Setting up libdevel-callchecker-perl:amd64 (0.009-2) ... Setting up libgfortran-15-dev:amd64 (15.2.0-7) ... Setting up pkgconf:amd64 (1.8.1-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (21) ... Setting up libthai0:amd64 (0.1.29-2+b1) ... Setting up ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 150 added, 0 removed; done. Setting up libglib2.0-0t64:amd64 (2.86.1-1) ... No schema files found: doing nothing. Setting up libfreetype6:amd64 (2.13.3+dfsg-1) ... Setting up libp11-kit0:amd64 (0.25.9-2) ... Setting up liblapack-dev:amd64 (3.12.1-7) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode Setting up libgssapi-krb5-2:amd64 (1.21.3-5) ... Setting up libdata-optlist-perl (0.114-1) ... Setting up icu-devtools (76.1-4) ... Setting up ucf (3.0052) ... Setting up libngtcp2-crypto-ossl0:amd64 (1.16.0-1) ... Setting up libreadline8t64:amd64 (8.3-3) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up xauth (1:1.1.2-1.1) ... Setting up groff-base (1.23.0-9) ... Setting up libharfbuzz0b:amd64 (12.1.0-1) ... Setting up libxss1:amd64 (1:1.2.3-1+b3) ... Setting up libfontconfig1:amd64 (2.15.0-2.4) ... Setting up libmro-compat-perl (0.15-2) ... Setting up libsm6:amd64 (2:1.2.6-1) ... Setting up libicu-dev:amd64 (76.1-4) ... Setting up libsub-exporter-perl (0.990-1) ... Setting up libhttp-message-perl (7.01-1) ... Setting up libeval-closure-perl (0.14-3) ... Setting up libgnutls30t64:amd64 (3.8.10-3) ... Setting up gfortran-15-x86-64-linux-gnu (15.2.0-7) ... Setting up fontconfig (2.15.0-2.4) ... Regenerating fonts cache... done. Setting up libxft2:amd64 (2.3.6-1+b4) ... Setting up libtirpc3t64:amd64 (1.3.6+ds-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libtk8.6:amd64 (8.6.17-1) ... Setting up libparams-classify-perl:amd64 (0.015-2+b4) ... Setting up libpango-1.0-0:amd64 (1.56.3-2) ... Setting up libpsl5t64:amd64 (0.21.2-1.1+b1) ... Setting up libreadline-dev:amd64 (8.3-3) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up gfortran-x86-64-linux-gnu (4:15.2.0-4) ... Setting up libcairo2:amd64 (1.18.4-1+b1) ... Setting up libtirpc-dev:amd64 (1.3.6+ds-1) ... Setting up libmodule-runtime-perl (0.018-1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-3) ... Setting up libxt6t64:amd64 (1:1.2.1-1.3) ... Setting up libdist-checkconflicts-perl (0.11-2) ... Setting up libpangoft2-1.0-0:amd64 (1.56.3-2) ... Setting up libngtcp2-crypto-gnutls8:amd64 (1.16.0-1) ... Setting up gfortran-15 (15.2.0-7) ... Setting up libpangocairo-1.0-0:amd64 (1.56.3-2) ... Setting up libcurl4t64:amd64 (8.17.0~rc2-1) ... Setting up libmodule-implementation-perl (0.09-2) ... Setting up libpackage-stash-perl (0.40-1) ... Setting up libcurl3t64-gnutls:amd64 (8.17.0~rc2-1) ... Setting up libwww-curl-perl:amd64 (4.17-12) ... Setting up debhelper (13.28) ... Setting up libmodule-runtime-conflicts-perl (0.003-2) ... Setting up gfortran (4:15.2.0-4) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libclass-load-perl (0.25-2) ... Setting up r-base-core (4.5.1-1) ... Creating config file /etc/R/Renviron with new version Setting up r-cran-crayon (1.5.3-1) ... Setting up libpackage-deprecationmanager-perl (0.18-1) ... Setting up libdevel-overloadinfo-perl (0.008-1) ... Setting up libclass-load-xs-perl (0.10-2+b4) ... Setting up r-cran-r6 (2.6.1-1) ... Setting up libb-hooks-endofscope-perl (0.28-2) ... Setting up r-bioc-genomeinfodbdata (1.2.13-2) ... Setting up r-cran-curl (7.0.0+dfsg-1) ... Setting up r-bioc-biocgenerics (0.52.0-2) ... Setting up r-base-dev (4.5.1-1) ... Setting up r-cran-sys (3.4.3-1) ... Setting up r-cran-mime (0.12-2) ... Setting up libmoose-perl:amd64 (2.4000-1) ... Setting up r-bioc-zlibbioc (1.52.0+dfsg-2) ... Setting up r-cran-askpass (1.2.1-1) ... Setting up r-cran-png (0.1-8-1+b1) ... Setting up r-cran-jsonlite (1.9.1+dfsg-1) ... Setting up r-bioc-s4vectors (0.44.0+dfsg-2) ... Setting up libnamespace-clean-perl (0.27-2) ... Setting up r-bioc-iranges (2.40.1-3) ... Setting up r-cran-openssl (2.3.2+dfsg-1) ... Setting up libwww-curl-simple-perl (0.100191-3) ... Setting up r-cran-httr (1.4.7+dfsg-1) ... Setting up r-bioc-xvector (0.46.0-2) ... Setting up dh-r (20250812) ... Setting up r-bioc-ucsc.utils (1.2.0+ds-2) ... Setting up r-bioc-genomeinfodb (1.42.3+dfsg-1) ... Setting up r-bioc-biostrings (2.74.1+dfsg-2) ... Processing triggers for libc-bin (2.41-12) ... Processing triggers for ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/2032377/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for forky I: user script /srv/workspace/pbuilder/2032377/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/r-bioc-keggrest-1.46.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../r-bioc-keggrest_1.46.0+dfsg-3_source.changes dpkg-buildpackage: info: source package r-bioc-keggrest dpkg-buildpackage: info: source version 1.46.0+dfsg-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Rebecca N. Palmer dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem R dh_auto_clean -O--buildsystem=R dh_autoreconf_clean -O--buildsystem=R dh_clean -O--buildsystem=R debian/rules binary dh binary --buildsystem R dh_update_autotools_config -O--buildsystem=R dh_autoreconf -O--buildsystem=R dh_auto_configure -O--buildsystem=R dh_auto_build -O--buildsystem=R dh_auto_test -O--buildsystem=R create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=R dh_prep -O--buildsystem=R dh_auto_install --destdir=debian/r-bioc-keggrest/ -O--buildsystem=R I: R Package: KEGGREST Version: 1.46.0 I: Building using R version 4.5.1-1 I: R API version: r-api-4.0 I: Using built-time from d/changelog: Wed, 30 Apr 2025 22:08:26 +0100 mkdir -p /build/reproducible-path/r-bioc-keggrest-1.46.0\+dfsg/debian/r-bioc-keggrest/usr/lib/R/site-library R CMD INSTALL -l /build/reproducible-path/r-bioc-keggrest-1.46.0\+dfsg/debian/r-bioc-keggrest/usr/lib/R/site-library --clean . --built-timestamp="'Wed, 30 Apr 2025 22:08:26 +0100'" * installing *source* package 'KEGGREST' ... ** this is package 'KEGGREST' version '1.46.0' file 'inst/doc/KEGGREST-vignette.html' is missing file 'R/parsers.R' has the wrong MD5 checksum ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading code for methods in class "KEGGFlatFileRecord" was not checked for suspicious field assignments (recommended package 'codetools' not available?) ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (KEGGREST) W: Ignoring specified R dependency: R (>= 3.5.0) I: Using r-cran-runit for Suggests:RUnit I: Using r-bioc-biocgenerics for Suggests:BiocGenerics I: Using r-bioc-biocstyle for Suggests:BiocStyle I: Using r-cran-knitr for Suggests:knitr I: Using r-cran-markdown for Suggests:markdown I: Using r-cran-httr for Imports:httr I: Using r-cran-png for Imports:png I: Using r-bioc-biostrings for Imports:Biostrings I: BioConductor API version: r-api-bioc-3.20 I: Use r-bioc-keggrest as Debian binary package for variables substitution dh_installdocs -O--buildsystem=R dh_installchangelogs -O--buildsystem=R dh_installsystemduser -O--buildsystem=R dh_perl -O--buildsystem=R dh_link -O--buildsystem=R dh_strip_nondeterminism -O--buildsystem=R dh_compress -O--buildsystem=R debian/rules override_dh_fixperms make[1]: Entering directory '/build/reproducible-path/r-bioc-keggrest-1.46.0+dfsg' dh_fixperms find debian -name "*.R" -exec chmod -x \{\} \; make[1]: Leaving directory '/build/reproducible-path/r-bioc-keggrest-1.46.0+dfsg' dh_missing -O--buildsystem=R dh_installdeb -O--buildsystem=R dh_gencontrol -O--buildsystem=R dh_md5sums -O--buildsystem=R dh_builddeb -O--buildsystem=R dpkg-deb: building package 'r-bioc-keggrest' in '../r-bioc-keggrest_1.46.0+dfsg-3_all.deb'. dpkg-genbuildinfo --build=binary -O../r-bioc-keggrest_1.46.0+dfsg-3_amd64.buildinfo dpkg-genchanges --build=binary -O../r-bioc-keggrest_1.46.0+dfsg-3_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/2032377/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/2032377/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2032377 and its subdirectories I: Current time: Fri Oct 31 17:50:32 +14 2025 I: pbuilder-time-stamp: 1761882632 + false + set +x Fri Oct 31 03:50:32 UTC 2025 I: Signing ./b2/r-bioc-keggrest_1.46.0+dfsg-3_amd64.buildinfo as r-bioc-keggrest_1.46.0+dfsg-3_amd64.buildinfo.asc Fri Oct 31 03:50:32 UTC 2025 I: Signed ./b2/r-bioc-keggrest_1.46.0+dfsg-3_amd64.buildinfo as ./b2/r-bioc-keggrest_1.46.0+dfsg-3_amd64.buildinfo.asc Fri Oct 31 03:50:32 UTC 2025 - build #2 for r-bioc-keggrest/forky/amd64 on ionos15-amd64 done. Starting cleanup. All cleanup done. Fri Oct 31 03:50:32 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-wrlvSgEn, removing. /srv/reproducible-results/rbuild-debian/r-b-build.IQgZXEkR: total 104 drwxrwxr-x 2 jenkins jenkins 4096 Oct 31 03:47 b1 drwxrwxr-x 2 jenkins jenkins 4096 Oct 31 03:50 b2 -rw-rw-r-- 1 jenkins jenkins 2156 May 1 2025 r-bioc-keggrest_1.46.0+dfsg-3.dsc -rw------- 1 jenkins jenkins 89036 Oct 31 03:47 rbuildlog.7AujPik /srv/reproducible-results/rbuild-debian/r-b-build.IQgZXEkR/b1: total 324 -rw-r--r-- 1 jenkins jenkins 85408 Oct 31 03:47 build.log -rw-r--r-- 1 jenkins jenkins 6596 Oct 31 03:47 r-bioc-keggrest_1.46.0+dfsg-3.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2156 Oct 31 03:47 r-bioc-keggrest_1.46.0+dfsg-3.dsc -rw-r--r-- 1 jenkins jenkins 191500 Oct 31 03:47 r-bioc-keggrest_1.46.0+dfsg-3_all.deb -rw-r--r-- 1 jenkins jenkins 10421 Oct 31 03:47 r-bioc-keggrest_1.46.0+dfsg-3_amd64.buildinfo -rw-rw-r-- 1 jenkins jenkins 11303 Oct 31 03:47 r-bioc-keggrest_1.46.0+dfsg-3_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1275 Oct 31 03:47 r-bioc-keggrest_1.46.0+dfsg-3_amd64.changes -rw-r--r-- 1 jenkins jenkins 1470 Oct 31 03:47 r-bioc-keggrest_1.46.0+dfsg-3_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.IQgZXEkR/b2: total 588 -rw-rw-r-- 1 jenkins jenkins 361301 Oct 31 03:50 build.log -rw-r--r-- 1 jenkins jenkins 6596 Oct 31 03:50 r-bioc-keggrest_1.46.0+dfsg-3.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2156 Oct 31 03:50 r-bioc-keggrest_1.46.0+dfsg-3.dsc -rw-r--r-- 1 jenkins jenkins 191500 Oct 31 03:50 r-bioc-keggrest_1.46.0+dfsg-3_all.deb -rw-rw-r-- 1 jenkins jenkins 10421 Oct 31 03:50 r-bioc-keggrest_1.46.0+dfsg-3_amd64.buildinfo -rw-rw-r-- 1 jenkins jenkins 11303 Oct 31 03:50 r-bioc-keggrest_1.46.0+dfsg-3_amd64.buildinfo.asc -rw-rw-r-- 1 jenkins jenkins 1275 Oct 31 03:50 r-bioc-keggrest_1.46.0+dfsg-3_amd64.changes -rw-rw-r-- 1 jenkins jenkins 1470 Oct 31 03:50 r-bioc-keggrest_1.46.0+dfsg-3_source.changes Fri Oct 31 03:50:34 UTC 2025 I: Deleting $TMPDIR on ionos15-amd64.debian.net. Fri Oct 31 03:50:34 UTC 2025 I: r-bioc-keggrest_1.46.0+dfsg-3_amd64.changes: Format: 1.8 Date: Wed, 30 Apr 2025 22:08:26 +0100 Source: r-bioc-keggrest Binary: r-bioc-keggrest Architecture: all Version: 1.46.0+dfsg-3 Distribution: unstable Urgency: medium Maintainer: Debian R Packages Maintainers Changed-By: Rebecca N. Palmer Description: r-bioc-keggrest - GNU R client-side REST access to KEGG Closes: 1104334 Changes: r-bioc-keggrest (1.46.0+dfsg-3) unstable; urgency=medium . * Team upload. * Don't crash on blank lines between records. (Closes: #1104334) * Disable the autopkgtest, as it connects to a restricted-use service. Checksums-Sha1: c6d53fddfb7f67b8b76ee354cc5d5d07075625f4 191500 r-bioc-keggrest_1.46.0+dfsg-3_all.deb 752115d2b29f0f5f1fc62f4f24b40be99392f490 10421 r-bioc-keggrest_1.46.0+dfsg-3_amd64.buildinfo Checksums-Sha256: 05a1e4002cf7893ed82be56a44bf31a70e391dead193f1a6e0e3ffb2e4cd7155 191500 r-bioc-keggrest_1.46.0+dfsg-3_all.deb b48728a0dba2fc2651992bdf2c2231da18f82248c125d8df68ef3cd0e5f8f5c3 10421 r-bioc-keggrest_1.46.0+dfsg-3_amd64.buildinfo Files: ca0299665ae0587aa480203267e00ae2 191500 gnu-r optional r-bioc-keggrest_1.46.0+dfsg-3_all.deb 0df9a34881e697b9234a9ebe1c1c8be1 10421 gnu-r optional r-bioc-keggrest_1.46.0+dfsg-3_amd64.buildinfo removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/forky/amd64/r-bioc-keggrest_1.46.0+dfsg-3.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/forky/amd64/r-bioc-keggrest_1.46.0+dfsg-3.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/forky/amd64/r-bioc-keggrest_1.46.0+dfsg-3.build1.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/forky/amd64/r-bioc-keggrest_1.46.0+dfsg-3.build2.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/buildinfo/forky/amd64/r-bioc-keggrest_1.46.0+dfsg-3_amd64.buildinfo' removed '/var/lib/jenkins/userContent/reproducible/debian/logdiffs/forky/amd64/r-bioc-keggrest_1.46.0+dfsg-3.diff.gz' Diff of the two buildlogs: -- --- b1/build.log 2025-10-31 03:47:05.732275566 +0000 +++ b2/build.log 2025-10-31 03:50:34.096532344 +0000 @@ -1,8 +1,2550 @@ I: pbuilder: network access will be disabled during build -I: Current time: Thu Oct 30 15:44:51 -12 2025 -I: pbuilder-time-stamp: 1761882291 +I: Current time: Fri Oct 31 17:47:09 +14 2025 +I: pbuilder-time-stamp: 1761882429 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] +tar: ./build: time stamp 2026-11-29 07:50:53 is 34005823.113826792 s in the future +tar: ./dev/ptmx: time stamp 2026-11-29 07:46:28 is 34005558.11361597 s in the future +tar: ./dev/zero: time stamp 2026-11-29 07:46:28 is 34005558.113464699 s in the future +tar: ./dev/null: time stamp 2026-11-29 07:46:28 is 34005558.113412683 s in the future +tar: ./dev/console: time stamp 2026-11-29 07:46:28 is 34005558.113335729 s in the future +tar: ./dev/random: time stamp 2026-11-29 07:46:28 is 34005558.113289662 s in the future +tar: ./dev/full: time stamp 2026-11-29 07:46:28 is 34005558.113247404 s in the future +tar: ./dev/pts: time stamp 2026-11-29 07:46:28 is 34005558.113148638 s in the future +tar: ./dev/tty: time stamp 2026-11-29 07:46:28 is 34005558.113060826 s in the future +tar: ./dev/urandom: time stamp 2026-11-29 07:46:28 is 34005558.113004157 s in the future +tar: ./etc/terminfo: time stamp 2026-11-29 07:46:38 is 34005568.112695757 s in the future +tar: ./etc/opt: time stamp 2026-11-29 07:46:28 is 34005558.11118848 s in the future +tar: ./etc/security/opasswd: time stamp 2026-11-29 07:46:40 is 34005570.110801619 s in 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in the future +tar: ./usr/share/man/es/man1: time stamp 2026-11-29 07:52:00 is 34005881.238877286 s in the future +tar: ./usr/share/man/es/man8: time stamp 2026-11-30 23:31:29 is 34148650.23886327 s in the future +tar: ./usr/share/man/es: time stamp 2026-11-29 07:46:27 is 34005548.238850801 s in the future +tar: ./usr/share/man/sv/man1: time stamp 2026-11-29 07:52:00 is 34005881.238836418 s in the future +tar: ./usr/share/man/sv: time stamp 2026-11-29 07:46:47 is 34005568.238822973 s in the future +tar: ./usr/share/man/man7: time stamp 2026-11-30 23:31:29 is 34148650.238808764 s in the future +tar: ./usr/share/man/fi/man8: time stamp 2026-11-29 07:52:01 is 34005882.238796024 s in the future +tar: ./usr/share/man/fi: time stamp 2026-11-29 07:51:39 is 34005860.238784044 s in the future +tar: ./usr/share/man/fr/man1: time stamp 2026-11-30 23:31:29 is 34148650.238769516 s in the future +tar: ./usr/share/man/fr/man8: time stamp 2026-11-30 23:31:29 is 34148650.238755681 s in the future +tar: ./usr/share/man/fr: time stamp 2026-11-29 07:46:41 is 34005562.238743627 s in the future +tar: ./usr/share/man: time stamp 2026-11-29 07:51:39 is 34005860.238731767 s in the future +tar: ./usr/share: time stamp 2026-11-29 07:51:42 is 34005863.238718746 s in the future +tar: ./usr: time stamp 2026-11-29 07:46:28 is 34005549.238706919 s in the future +tar: ./etc/systemd/system/timers.target.wants: time stamp 2026-11-29 07:50:27 is 34005788.238682879 s in the future +tar: ./etc/systemd/system: time stamp 2026-11-29 07:46:29 is 34005550.23867039 s in the future +tar: ./etc/alternatives: time stamp 2026-11-29 07:52:01 is 34005882.238648171 s in the future I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem @@ -24,53 +2566,85 @@ dpkg-source: info: applying 1104334.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/1814357/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/2032377/tmp/hooks/D01_modify_environment starting +debug: Running on ionos15-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Oct 31 03:47 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/2032377/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/2032377/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' - DISTRIBUTION='forky' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.3.3(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' + DIRSTACK=() + DISTRIBUTION=forky + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='b808cec69a5a471dbcb8cbed7bc1a656' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='1814357' - PS1='# ' - PS2='> ' + INVOCATION_ID=3b57f8e38c9644f0a6d2f14206a24748 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=2032377 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.IQgZXEkR/pbuilderrc_whAG --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.IQgZXEkR/b1 --logfile b1/build.log r-bioc-keggrest_1.46.0+dfsg-3.dsc' - SUDO_GID='111' - SUDO_HOME='/var/lib/jenkins' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://46.16.76.132:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.IQgZXEkR/pbuilderrc_ZjYm --distribution forky --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.IQgZXEkR/b2 --logfile b2/build.log r-bioc-keggrest_1.46.0+dfsg-3.dsc' + SUDO_GID=111 + SUDO_HOME=/var/lib/jenkins + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://213.165.73.152:3128 I: uname -a - Linux ionos11-amd64 6.12.48+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.48-1 (2025-09-20) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.12.48+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.48-1 (2025-09-20) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/1814357/tmp/hooks/D02_print_environment finished +I: user script /srv/workspace/pbuilder/2032377/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -332,7 +2906,7 @@ Get: 214 http://deb.debian.org/debian forky/main amd64 r-cran-crayon all 1.5.3-1 [165 kB] Get: 215 http://deb.debian.org/debian forky/main amd64 r-bioc-biostrings amd64 2.74.1+dfsg-2 [13.4 MB] Get: 216 http://deb.debian.org/debian forky/main amd64 r-cran-png amd64 0.1-8-1+b1 [41.5 kB] -Fetched 150 MB in 10s (15.4 MB/s) +Fetched 150 MB in 8s (18.9 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19869 files and directories currently installed.) @@ -1040,8 +3614,8 @@ Setting up tzdata (2025b-5) ... Current default time zone: 'Etc/UTC' -Local time is now: Fri Oct 31 03:46:27 UTC 2025. -Universal Time is now: Fri Oct 31 03:46:27 UTC 2025. +Local time is now: Fri Oct 31 03:49:51 UTC 2025. +Universal Time is now: Fri Oct 31 03:49:51 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up zip (3.0-15) ... @@ -1243,7 +3817,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/r-bioc-keggrest-1.46.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../r-bioc-keggrest_1.46.0+dfsg-3_source.changes +I: user script /srv/workspace/pbuilder/2032377/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for forky +I: user script /srv/workspace/pbuilder/2032377/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/r-bioc-keggrest-1.46.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../r-bioc-keggrest_1.46.0+dfsg-3_source.changes dpkg-buildpackage: info: source package r-bioc-keggrest dpkg-buildpackage: info: source version 1.46.0+dfsg-3 dpkg-buildpackage: info: source distribution unstable @@ -1325,12 +3903,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/2032377/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/2032377/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/1814357 and its subdirectories -I: Current time: Thu Oct 30 15:47:05 -12 2025 -I: pbuilder-time-stamp: 1761882425 +I: removing directory /srv/workspace/pbuilder/2032377 and its subdirectories +I: Current time: Fri Oct 31 17:50:32 +14 2025 +I: pbuilder-time-stamp: 1761882632 Compressing the 2nd log... /var/lib/jenkins/userContent/reproducible/debian/logdiffs/forky/amd64/r-bioc-keggrest_1.46.0+dfsg-3.diff: 88.0% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/forky/amd64/r-bioc-keggrest_1.46.0+dfsg-3.diff.gz b2/build.log: 86.7% -- replaced with stdout Compressing the 1st log... b1/build.log: 81.2% -- replaced with stdout Fri Oct 31 03:50:35 UTC 2025 I: diffoscope 306 will be used to compare the two builds: ++ date -u +%s + DIFFOSCOPE_STAMP=/var/log/reproducible-builds/diffoscope_stamp_r-bioc-keggrest_forky_amd64_1761882635 + touch /var/log/reproducible-builds/diffoscope_stamp_r-bioc-keggrest_forky_amd64_1761882635 + RESULT=0 + systemd-run '--description=diffoscope on r-bioc-keggrest/1.46.0+dfsg-3 in forky/amd64' --slice=rb-build-diffoscope.slice -u rb-diffoscope-amd64_7-77426 '--property=SuccessExitStatus=1 124' --user --send-sighup --pipe --wait -E TMPDIR timeout 155m nice schroot --directory /srv/reproducible-results/rbuild-debian/r-b-build.IQgZXEkR --run-session -c jenkins-reproducible-forky-diffoscope-df1e6025-c463-449e-9986-784c07614921 -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian/r-b-build.IQgZXEkR/dbd-tmp-H9rqa0W ; timeout 150m diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.IQgZXEkR/r-bioc-keggrest_1.46.0+dfsg-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.IQgZXEkR/r-bioc-keggrest_1.46.0+dfsg-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.IQgZXEkR/r-bioc-keggrest_1.46.0+dfsg-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.IQgZXEkR/b1/r-bioc-keggrest_1.46.0+dfsg-3_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.IQgZXEkR/b2/r-bioc-keggrest_1.46.0+dfsg-3_amd64.changes' + false + set +x Running as unit: rb-diffoscope-amd64_7-77426.service; invocation ID: ae3d893601984fa7ad38eef082845728 # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.IQgZXEkR/r-bioc-keggrest_1.46.0+dfsg-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.IQgZXEkR/r-bioc-keggrest_1.46.0+dfsg-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.IQgZXEkR/r-bioc-keggrest_1.46.0+dfsg-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.IQgZXEkR/b1/r-bioc-keggrest_1.46.0+dfsg-3_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.IQgZXEkR/b2/r-bioc-keggrest_1.46.0+dfsg-3_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited, status=0/SUCCESS Service runtime: 202ms CPU time consumed: 169ms Memory peak: 17.8M (swap: 0B) _ _ _ _ _ __ | |__ (_) ___ ___ | | _____ __ _ __ _ _ __ ___ ___| |_ | '__|____| '_ \| |/ _ \ / __|____| |/ / _ \/ _` |/ _` | '__/ _ \/ __| __| | | |_____| |_) | | (_) | (_|_____| < __/ (_| | (_| | | | __/\__ \ |_ |_| |_.__/|_|\___/ \___| |_|\_\___|\__, |\__, |_| \___||___/\__| |___/ |___/ Fri Oct 31 03:50:35 UTC 2025 I: diffoscope 306 found no differences in the changes files, and a .buildinfo file also exists. Fri Oct 31 03:50:35 UTC 2025 I: r-bioc-keggrest from forky built successfully and reproducibly on amd64. INSERT 0 1 INSERT 0 1 DELETE 1 [2025-10-31 03:50:35] INFO: Starting at 2025-10-31 03:50:35.897587 [2025-10-31 03:50:36] INFO: Generating the pages of 1 package(s) [2025-10-31 03:50:36] CRITICAL: https://tests.reproducible-builds.org/debian/forky/amd64/r-bioc-keggrest didn't produce a buildlog, even though it has been built. [2025-10-31 03:50:36] INFO: Finished at 2025-10-31 03:50:36.165134, took: 0:00:00.267550 Fri Oct 31 03:50:36 UTC 2025 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/forky/amd64/r-bioc-keggrest.html Fri Oct 31 03:50:36 UTC 2025 I: Removing signed r-bioc-keggrest_1.46.0+dfsg-3_amd64.buildinfo.asc files: removed './b1/r-bioc-keggrest_1.46.0+dfsg-3_amd64.buildinfo.asc' removed './b2/r-bioc-keggrest_1.46.0+dfsg-3_amd64.buildinfo.asc' 1761882636 amd64 forky r-bioc-keggrest Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/forky/amd64/r-bioc-keggrest_1.46.0+dfsg-3.rbuild.log: 79.5% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/forky/amd64/r-bioc-keggrest_1.46.0+dfsg-3.rbuild.log.gz [2025-10-31 03:50:36] INFO: Starting at 2025-10-31 03:50:36.490319 [2025-10-31 03:50:36] INFO: Generating the pages of 1 package(s) [2025-10-31 03:50:36] INFO: Finished at 2025-10-31 03:50:36.749484, took: 0:00:00.259168 All cleanup done. Fri Oct 31 03:50:36 UTC 2025 - total duration: 0h 5m 56s. Fri Oct 31 03:50:36 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-01G0fe7a, removing. Finished with result: success Main processes terminated with: code=exited, status=0/SUCCESS Service runtime: 5min 56.945s CPU time consumed: 3.292s Memory peak: 42.3M (swap: 0B)