Running as unit: rb-build-amd64_7-77427.service; invocation ID: 2849866145654c69b70e1d07159efa0c ==================================================================================== Fri Oct 31 03:50:39 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_amd64_7) on jenkins, called using "ionos11-amd64 ionos15-amd64" as arguments. Fri Oct 31 03:50:39 UTC 2025 - actually running "reproducible_build.sh" (md5sum cc591790ab2c8e13f5e554202b95c89c) as "/tmp/jenkins-script-4an6Ysed" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Fri Oct 31 03:50:39 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos11-amd64.debian.net is marked as down. Fri Oct 31 03:50:39 UTC 2025 - checking via ssh if ionos11-amd64.debian.net is up. removed '/tmp/read-only-fs-test-4LN8en' Fri Oct 31 03:50:39 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos15-amd64.debian.net is marked as down. Fri Oct 31 03:50:39 UTC 2025 - checking via ssh if ionos15-amd64.debian.net is up. removed '/tmp/read-only-fs-test-5vwc0h' ok, let's check if mummer is building anywhere yet… ok, mummer is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of mummer in forky on amd64 on jenkins now. 1st build will be done on ionos11-amd64.debian.net. 2nd build will be done on ionos15-amd64.debian.net. ============================================================================= Fri Oct 31 03:50:42 UTC 2025 I: starting to build mummer/forky/amd64 on jenkins on '2025-10-31 03:50' Fri Oct 31 03:50:42 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_7/77427/console.log 1761882642 amd64 forky mummer Fri Oct 31 03:50:42 UTC 2025 I: Downloading source for forky/mummer=3.23+dfsg-8 --2025-10-31 03:50:42-- http://deb.debian.org/debian/pool/main/m/mummer/mummer_3.23%2bdfsg-8.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2173 (2.1K) [text/prs.lines.tag] Saving to: ‘mummer_3.23+dfsg-8.dsc’ 0K .. 100% 214M=0s 2025-10-31 03:50:42 (214 MB/s) - ‘mummer_3.23+dfsg-8.dsc’ saved [2173/2173] --2025-10-31 03:50:42-- http://deb.debian.org/debian/pool/main/m/mummer/mummer_3.23%2bdfsg-8.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2173 (2.1K) [text/prs.lines.tag] Saving to: ‘mummer_3.23+dfsg-8.dsc’ 0K .. 100% 214M=0s 2025-10-31 03:50:42 (214 MB/s) - ‘mummer_3.23+dfsg-8.dsc’ saved [2173/2173] Fri Oct 31 03:50:42 UTC 2025 I: mummer_3.23+dfsg-8.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: mummer Binary: mummer, mummer-doc Architecture: any all Version: 3.23+dfsg-8 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller , Andreas Tille , Charles Plessy Homepage: https://mummer.sourceforge.net/ Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/mummer Vcs-Git: https://salsa.debian.org/med-team/mummer.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), texlive-latex-base, texlive-latex-recommended, texlive-fonts-recommended Package-List: mummer deb science optional arch=any mummer-doc deb doc optional arch=all Checksums-Sha1: 0dc589e7ceeb59d222ec21decf225ba193527330 1112616 mummer_3.23+dfsg.orig.tar.xz 01b4363663073e877e4562a7426f715d13a2eab8 416352 mummer_3.23+dfsg-8.debian.tar.xz Checksums-Sha256: 1ef5eb11b22ff39d930ea9168ed6852a28be2c21e29ac791c4edcc86eca7d805 1112616 mummer_3.23+dfsg.orig.tar.xz 864d465c88d62db2150fe616ce20e3e640263e39b3d9eb85a3cef053d5ccec49 416352 mummer_3.23+dfsg-8.debian.tar.xz Files: 64c8ac0f462885f9978b9e49accbc71f 1112616 mummer_3.23+dfsg.orig.tar.xz 16ae45f82d20b64c4eb583a8aef7275f 416352 mummer_3.23+dfsg-8.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmOMhm8RHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtHIZA//eUDhdfkDfyZByP7wPkFgHPcx/EEPDTiY YU0jpxYvcxPwibV3gKrlK9pdycowU2xhuLgfsQ3+Iq019Dz+cL//EPGDCNAh8U7p qnXX4cnV1afFAyB5mE2Z0GDYDt9OeyV/SUTE+6qIDa7ri0PvWl8k+UYwJgZ4Qu30 N5pATtkhm0WcRSuVIBBeieFlvPT4iXVP1OrKbACY7VWoPd4xhVXVLGIIuyg6eid9 C71WxafyBNuV/klWk1f4WmcTNpM/+OuWtcfZrfiU3zc6fTX43k93MS/BZxQmsiRS b39Dw5KDii3JDPwsQDMSpvmmhW18lJkGlIRO9Pe/3zAYzyl6sB36xqFpWvszd5AY 9j7Doxc47OGoB5h9nD1VpFIXz4B2/icc8rEUjvorLMfYedfGCMB021E9YbqToGUk +l3ziWgK+Tpk+boF1jWSOqw8mjoRPoOydlSE0wyC9GiMQ02W3EuWnr1NlfWP00aW wf00Akp6s55wtU9/KWHwCR4tLrCvxaBmMUKUTY4WIUvRgSDdM18sS8RdwXDAZUBG HCMC7jqsy9adgwSuDoy49MEpkScZ3DlL0cRdlX8WP/p4WpG9NKmte6GA+8GF60RG CEqfz52Nho4jDsK6bqMLrbM/GZ/YG+QoHfDn1HTpSdaVSGvuE+S3MjcJt4bWW/tK hg8rQICZlQ4= =+dC6 -----END PGP SIGNATURE----- Fri Oct 31 03:50:42 UTC 2025 I: Checking whether the package is not for us Fri Oct 31 03:50:42 UTC 2025 I: Starting 1st build on remote node ionos11-amd64.debian.net. Fri Oct 31 03:50:42 UTC 2025 I: Preparing to do remote build '1' on ionos11-amd64.debian.net. Fri Oct 31 03:50:42 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos11-amd64.debian.net is marked as down. Fri Oct 31 03:50:42 UTC 2025 - checking via ssh if ionos11-amd64.debian.net is up. removed '/tmp/read-only-fs-test-rEWS9W' ==================================================================================== Fri Oct 31 03:50:43 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos11-amd64, called using "1 mummer forky /srv/reproducible-results/rbuild-debian/r-b-build.Dw5QbLMR 3.23+dfsg-8" as arguments. Fri Oct 31 03:50:43 UTC 2025 - actually running "reproducible_build.sh" (md5sum cc591790ab2c8e13f5e554202b95c89c) as "/tmp/jenkins-script-dOo3FDBW" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Fri Oct 31 03:50:43 UTC 2025 I: Downloading source for forky/mummer=3.23+dfsg-8 Reading package lists... NOTICE: 'mummer' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/mummer.git Please use: git clone https://salsa.debian.org/med-team/mummer.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 1531 kB of source archives. Get:1 http://deb.debian.org/debian forky/main mummer 3.23+dfsg-8 (dsc) [2173 B] Get:2 http://deb.debian.org/debian forky/main mummer 3.23+dfsg-8 (tar) [1113 kB] Get:3 http://deb.debian.org/debian forky/main mummer 3.23+dfsg-8 (diff) [416 kB] Fetched 1531 kB in 0s (79.2 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'mummer' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/mummer.git Please use: git clone https://salsa.debian.org/med-team/mummer.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 1531 kB of source archives. Get:1 http://deb.debian.org/debian forky/main mummer 3.23+dfsg-8 (dsc) [2173 B] Get:2 http://deb.debian.org/debian forky/main mummer 3.23+dfsg-8 (tar) [1113 kB] Get:3 http://deb.debian.org/debian forky/main mummer 3.23+dfsg-8 (diff) [416 kB] Fetched 1531 kB in 0s (79.2 MB/s) Download complete and in download only mode ============================================================================= Building mummer in forky on amd64 on ionos11-amd64 now. Date: Fri Oct 31 03:50:43 UTC 2025 Date UTC: Fri Oct 31 03:50:43 UTC 2025 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Thu Oct 30 15:50:43 -12 2025 I: pbuilder-time-stamp: 1761882643 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [mummer_3.23+dfsg-8.dsc] I: copying [./mummer_3.23+dfsg.orig.tar.xz] I: copying [./mummer_3.23+dfsg-8.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./mummer_3.23+dfsg-8.dsc: no acceptable signature found dpkg-source: info: extracting mummer in mummer-3.23+dfsg dpkg-source: info: unpacking mummer_3.23+dfsg.orig.tar.xz dpkg-source: info: unpacking mummer_3.23+dfsg-8.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 10_install_dirs.patch dpkg-source: info: applying 02at_docs_web.diff dpkg-source: info: applying enable_building_with_tetex.patch dpkg-source: info: applying fix_sf_privacy_breach_issue.patch dpkg-source: info: applying hardening.patch dpkg-source: info: applying spelling.patch dpkg-source: info: applying addition_from_mugsy.patch dpkg-source: info: applying 0009-improve-performance-of-delta2maf.patch dpkg-source: info: applying mummerplot.patch dpkg-source: info: applying remove-csh-dependency.patch dpkg-source: info: applying remove-csh-from-doc.patch dpkg-source: info: applying reproducible-build.patch dpkg-source: info: applying gnuplot.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1863848/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' DISTRIBUTION='forky' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='a5f9f4c6e301411d9925024a2e4889e0' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1863848' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Dw5QbLMR/pbuilderrc_W9nx --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Dw5QbLMR/b1 --logfile b1/build.log mummer_3.23+dfsg-8.dsc' SUDO_GID='111' SUDO_HOME='/var/lib/jenkins' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos11-amd64 6.12.48+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.48-1 (2025-09-20) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1863848/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), texlive-latex-base, texlive-latex-recommended, texlive-fonts-recommended dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19869 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on texlive-latex-base; however: Package texlive-latex-base is not installed. pbuilder-satisfydepends-dummy depends on texlive-latex-recommended; however: Package texlive-latex-recommended is not installed. pbuilder-satisfydepends-dummy depends on texlive-fonts-recommended; however: Package texlive-fonts-recommended is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-lmodern{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbrotli1{a} libcairo2{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfontenc1{a} libfreetype6{a} libglib2.0-0t64{a} libgraphite2-3{a} libharfbuzz0b{a} libice6{a} libicu76{a} libkpathsea6{a} libmagic-mgc{a} libmagic1t64{a} libmpfi0{a} libpaper-utils{a} libpaper2{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libpotrace0{a} libproc2-0{a} libptexenc1{a} libsm6{a} libsynctex2{a} libteckit0{a} libtexlua53-5{a} libtext-charwidth-perl{a} libtext-wrapi18n-perl{a} libtool{a} libuchardet0{a} libunistring5{a} libx11-6{a} libx11-data{a} libxau6{a} libxaw7{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxi6{a} libxml2-16{a} libxmu6{a} libxpm4{a} libxrender1{a} libxt6t64{a} libzzip-0-13t64{a} lmodern{a} m4{a} man-db{a} po-debconf{a} procps{a} sensible-utils{a} t1utils{a} tex-common{a} texlive-base{a} texlive-binaries{a} texlive-fonts-recommended{a} texlive-latex-base{a} texlive-latex-recommended{a} texlive-luatex{a} ucf{a} x11-common{a} xdg-utils{a} xfonts-encodings{a} xfonts-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl dvisvgm libarchive-cpio-perl libfile-mimeinfo-perl libglib2.0-data libltdl-dev libmail-sendmail-perl libnet-dbus-perl libx11-protocol-perl linux-sysctl-defaults lynx psmisc shared-mime-info tex-gyre tipa wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 90 newly installed, 0 to remove and 0 not upgraded. Need to get 128 MB of archives. After unpacking 364 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian forky/main amd64 libexpat1 amd64 2.7.3-1 [112 kB] Get: 2 http://deb.debian.org/debian forky/main amd64 libproc2-0 amd64 2:4.0.4-9 [65.6 kB] Get: 3 http://deb.debian.org/debian forky/main amd64 procps amd64 2:4.0.4-9 [882 kB] Get: 4 http://deb.debian.org/debian forky/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get: 5 http://deb.debian.org/debian forky/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 6 http://deb.debian.org/debian forky/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 7 http://deb.debian.org/debian forky/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 8 http://deb.debian.org/debian forky/main amd64 gettext-base amd64 0.23.1-2+b1 [244 kB] Get: 9 http://deb.debian.org/debian forky/main amd64 libuchardet0 amd64 0.0.8-2 [68.5 kB] Get: 10 http://deb.debian.org/debian forky/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 11 http://deb.debian.org/debian forky/main amd64 bsdextrautils amd64 2.41.2-4 [98.5 kB] Get: 12 http://deb.debian.org/debian forky/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 13 http://deb.debian.org/debian forky/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 14 http://deb.debian.org/debian forky/main amd64 libtext-charwidth-perl amd64 0.04-11+b4 [9476 B] Get: 15 http://deb.debian.org/debian forky/main amd64 libtext-wrapi18n-perl all 0.06-10 [8808 B] Get: 16 http://deb.debian.org/debian forky/main amd64 ucf all 3.0052 [43.3 kB] Get: 17 http://deb.debian.org/debian forky/main amd64 m4 amd64 1.4.20-2 [325 kB] Get: 18 http://deb.debian.org/debian forky/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 19 http://deb.debian.org/debian forky/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 20 http://deb.debian.org/debian forky/main amd64 automake all 1:1.18.1-2 [877 kB] Get: 21 http://deb.debian.org/debian forky/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 22 http://deb.debian.org/debian forky/main amd64 libdebhelper-perl all 13.28 [92.4 kB] Get: 23 http://deb.debian.org/debian forky/main amd64 libtool all 2.5.4-7 [540 kB] Get: 24 http://deb.debian.org/debian forky/main amd64 dh-autoreconf all 21 [12.2 kB] Get: 25 http://deb.debian.org/debian forky/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 26 http://deb.debian.org/debian forky/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 27 http://deb.debian.org/debian forky/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 28 http://deb.debian.org/debian forky/main amd64 libelf1t64 amd64 0.193-3 [192 kB] Get: 29 http://deb.debian.org/debian forky/main amd64 dwz amd64 0.16-2 [108 kB] Get: 30 http://deb.debian.org/debian forky/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 31 http://deb.debian.org/debian forky/main amd64 libxml2-16 amd64 2.14.6+dfsg-0.1 [651 kB] Get: 32 http://deb.debian.org/debian forky/main amd64 gettext amd64 0.23.1-2+b1 [1680 kB] Get: 33 http://deb.debian.org/debian forky/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 34 http://deb.debian.org/debian forky/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 35 http://deb.debian.org/debian forky/main amd64 debhelper all 13.28 [941 kB] Get: 36 http://deb.debian.org/debian forky/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 37 http://deb.debian.org/debian forky/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 38 http://deb.debian.org/debian forky/main amd64 fontconfig-config amd64 2.15.0-2.4 [318 kB] Get: 39 http://deb.debian.org/debian forky/main amd64 fonts-lmodern all 2.005-1 [4540 kB] Get: 40 http://deb.debian.org/debian forky/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get: 41 http://deb.debian.org/debian forky/main amd64 libpng16-16t64 amd64 1.6.50-1 [282 kB] Get: 42 http://deb.debian.org/debian forky/main amd64 libfreetype6 amd64 2.13.3+dfsg-1 [452 kB] Get: 43 http://deb.debian.org/debian forky/main amd64 libfontconfig1 amd64 2.15.0-2.4 [401 kB] Get: 44 http://deb.debian.org/debian forky/main amd64 libpixman-1-0 amd64 0.46.4-1 [259 kB] Get: 45 http://deb.debian.org/debian forky/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB] Get: 46 http://deb.debian.org/debian forky/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB] Get: 47 http://deb.debian.org/debian forky/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB] Get: 48 http://deb.debian.org/debian forky/main amd64 libx11-data all 2:1.8.12-1 [343 kB] Get: 49 http://deb.debian.org/debian forky/main amd64 libx11-6 amd64 2:1.8.12-1 [815 kB] Get: 50 http://deb.debian.org/debian forky/main amd64 libxcb-render0 amd64 1.17.0-2+b1 [115 kB] Get: 51 http://deb.debian.org/debian forky/main amd64 libxcb-shm0 amd64 1.17.0-2+b1 [105 kB] Get: 52 http://deb.debian.org/debian forky/main amd64 libxext6 amd64 2:1.3.4-1+b3 [50.4 kB] Get: 53 http://deb.debian.org/debian forky/main amd64 libxrender1 amd64 1:0.9.12-1 [27.9 kB] Get: 54 http://deb.debian.org/debian forky/main amd64 libcairo2 amd64 1.18.4-1+b1 [538 kB] Get: 55 http://deb.debian.org/debian forky/main amd64 libffi8 amd64 3.5.2-2 [25.5 kB] Get: 56 http://deb.debian.org/debian forky/main amd64 libfontenc1 amd64 1:1.1.8-1+b2 [23.3 kB] Get: 57 http://deb.debian.org/debian forky/main amd64 libglib2.0-0t64 amd64 2.86.1-1 [1546 kB] Get: 58 http://deb.debian.org/debian forky/main amd64 libgraphite2-3 amd64 1.3.14-11 [76.7 kB] Get: 59 http://deb.debian.org/debian forky/main amd64 libharfbuzz0b amd64 12.1.0-1 [530 kB] Get: 60 http://deb.debian.org/debian forky/main amd64 x11-common all 1:7.7+26 [217 kB] Get: 61 http://deb.debian.org/debian forky/main amd64 libice6 amd64 2:1.1.1-1 [65.4 kB] Get: 62 http://deb.debian.org/debian forky/main amd64 libicu76 amd64 76.1-4 [9722 kB] Get: 63 http://deb.debian.org/debian forky/main amd64 libkpathsea6 amd64 2025.20250727.75242+ds-4 [154 kB] Get: 64 http://deb.debian.org/debian forky/main amd64 libmpfi0 amd64 1.5.4+ds-4 [35.5 kB] Get: 65 http://deb.debian.org/debian forky/main amd64 libpaper2 amd64 2.2.5-0.3+b2 [16.7 kB] Get: 66 http://deb.debian.org/debian forky/main amd64 libpaper-utils amd64 2.2.5-0.3+b2 [16.5 kB] Get: 67 http://deb.debian.org/debian forky/main amd64 libpotrace0 amd64 1.16-2+b2 [25.6 kB] Get: 68 http://deb.debian.org/debian forky/main amd64 libptexenc1 amd64 2025.20250727.75242+ds-4 [50.5 kB] Get: 69 http://deb.debian.org/debian forky/main amd64 libsm6 amd64 2:1.2.6-1 [37.3 kB] Get: 70 http://deb.debian.org/debian forky/main amd64 libsynctex2 amd64 2025.20250727.75242+ds-4 [58.2 kB] Get: 71 http://deb.debian.org/debian forky/main amd64 libteckit0 amd64 2.5.12+ds1-1+b1 [341 kB] Get: 72 http://deb.debian.org/debian forky/main amd64 libtexlua53-5 amd64 2025.20250727.75242+ds-4 [99.4 kB] Get: 73 http://deb.debian.org/debian forky/main amd64 libxt6t64 amd64 1:1.2.1-1.3 [208 kB] Get: 74 http://deb.debian.org/debian forky/main amd64 libxmu6 amd64 2:1.1.3-3+b4 [59.0 kB] Get: 75 http://deb.debian.org/debian forky/main amd64 libxpm4 amd64 1:3.5.17-1+b3 [56.2 kB] Get: 76 http://deb.debian.org/debian forky/main amd64 libxaw7 amd64 2:1.0.16-1 [212 kB] Get: 77 http://deb.debian.org/debian forky/main amd64 libxi6 amd64 2:1.8.2-1 [78.9 kB] Get: 78 http://deb.debian.org/debian forky/main amd64 libzzip-0-13t64 amd64 0.13.78+dfsg.1-0.2 [59.2 kB] Get: 79 http://deb.debian.org/debian forky/main amd64 tex-common all 6.19 [29.4 kB] Get: 80 http://deb.debian.org/debian forky/main amd64 xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get: 81 http://deb.debian.org/debian forky/main amd64 xfonts-utils amd64 1:7.7+7 [93.3 kB] Get: 82 http://deb.debian.org/debian forky/main amd64 lmodern all 2.005-1 [9480 kB] Get: 83 http://deb.debian.org/debian forky/main amd64 t1utils amd64 1.41-4 [62.1 kB] Get: 84 http://deb.debian.org/debian forky/main amd64 texlive-binaries amd64 2025.20250727.75242+ds-4 [7261 kB] Get: 85 http://deb.debian.org/debian forky/main amd64 xdg-utils all 1.2.1-2 [75.8 kB] Get: 86 http://deb.debian.org/debian forky/main amd64 texlive-base all 2025.20250927-3 [23.1 MB] Get: 87 http://deb.debian.org/debian forky/main amd64 texlive-fonts-recommended all 2025.20250927-3 [4992 kB] Get: 88 http://deb.debian.org/debian forky/main amd64 texlive-luatex all 2025.20250927-3 [36.0 MB] Get: 89 http://deb.debian.org/debian forky/main amd64 texlive-latex-base all 2025.20250927-3 [1320 kB] Get: 90 http://deb.debian.org/debian forky/main amd64 texlive-latex-recommended all 2025.20250927-3 [8509 kB] Fetched 128 MB in 5s (27.0 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19869 files and directories currently installed.) Preparing to unpack .../00-libexpat1_2.7.3-1_amd64.deb ... Unpacking libexpat1:amd64 (2.7.3-1) ... Selecting previously unselected package libproc2-0:amd64. Preparing to unpack .../01-libproc2-0_2%3a4.0.4-9_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.4-9) ... Selecting previously unselected package procps. 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Selecting previously unselected package libgraphite2-3:amd64. Preparing to unpack .../57-libgraphite2-3_1.3.14-11_amd64.deb ... Unpacking libgraphite2-3:amd64 (1.3.14-11) ... Selecting previously unselected package libharfbuzz0b:amd64. Preparing to unpack .../58-libharfbuzz0b_12.1.0-1_amd64.deb ... Unpacking libharfbuzz0b:amd64 (12.1.0-1) ... Selecting previously unselected package x11-common. Preparing to unpack .../59-x11-common_1%3a7.7+26_all.deb ... Unpacking x11-common (1:7.7+26) ... Selecting previously unselected package libice6:amd64. Preparing to unpack .../60-libice6_2%3a1.1.1-1_amd64.deb ... Unpacking libice6:amd64 (2:1.1.1-1) ... Selecting previously unselected package libicu76:amd64. Preparing to unpack .../61-libicu76_76.1-4_amd64.deb ... Unpacking libicu76:amd64 (76.1-4) ... Selecting previously unselected package libkpathsea6:amd64. Preparing to unpack .../62-libkpathsea6_2025.20250727.75242+ds-4_amd64.deb ... Unpacking libkpathsea6:amd64 (2025.20250727.75242+ds-4) ... Selecting previously unselected package libmpfi0:amd64. Preparing to unpack .../63-libmpfi0_1.5.4+ds-4_amd64.deb ... Unpacking libmpfi0:amd64 (1.5.4+ds-4) ... Selecting previously unselected package libpaper2:amd64. Preparing to unpack .../64-libpaper2_2.2.5-0.3+b2_amd64.deb ... Unpacking libpaper2:amd64 (2.2.5-0.3+b2) ... Selecting previously unselected package libpaper-utils. Preparing to unpack .../65-libpaper-utils_2.2.5-0.3+b2_amd64.deb ... Unpacking libpaper-utils (2.2.5-0.3+b2) ... Selecting previously unselected package libpotrace0:amd64. Preparing to unpack .../66-libpotrace0_1.16-2+b2_amd64.deb ... Unpacking libpotrace0:amd64 (1.16-2+b2) ... Selecting previously unselected package libptexenc1:amd64. Preparing to unpack .../67-libptexenc1_2025.20250727.75242+ds-4_amd64.deb ... Unpacking libptexenc1:amd64 (2025.20250727.75242+ds-4) ... Selecting previously unselected package libsm6:amd64. Preparing to unpack .../68-libsm6_2%3a1.2.6-1_amd64.deb ... Unpacking libsm6:amd64 (2:1.2.6-1) ... Selecting previously unselected package libsynctex2:amd64. Preparing to unpack .../69-libsynctex2_2025.20250727.75242+ds-4_amd64.deb ... Unpacking libsynctex2:amd64 (2025.20250727.75242+ds-4) ... Selecting previously unselected package libteckit0:amd64. Preparing to unpack .../70-libteckit0_2.5.12+ds1-1+b1_amd64.deb ... Unpacking libteckit0:amd64 (2.5.12+ds1-1+b1) ... Selecting previously unselected package libtexlua53-5:amd64. Preparing to unpack .../71-libtexlua53-5_2025.20250727.75242+ds-4_amd64.deb ... Unpacking libtexlua53-5:amd64 (2025.20250727.75242+ds-4) ... Selecting previously unselected package libxt6t64:amd64. Preparing to unpack .../72-libxt6t64_1%3a1.2.1-1.3_amd64.deb ... Unpacking libxt6t64:amd64 (1:1.2.1-1.3) ... Selecting previously unselected package libxmu6:amd64. Preparing to unpack .../73-libxmu6_2%3a1.1.3-3+b4_amd64.deb ... Unpacking libxmu6:amd64 (2:1.1.3-3+b4) ... Selecting previously unselected package libxpm4:amd64. 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Setting up libxdmcp6:amd64 (1:1.1.5-1) ... Setting up libxcb1:amd64 (1.17.0-2+b1) ... Setting up bsdextrautils (2.41.2-4) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libxcb-render0:amd64 (1.17.0-2+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libxml2-16:amd64 (2.14.6+dfsg-0.1) ... Setting up libdebhelper-perl (13.28) ... Setting up libbrotli1:amd64 (1.1.0-2+b7) ... Setting up libmagic1t64:amd64 (1:5.46-5) ... Setting up x11-common (1:7.7+26) ... invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up gettext-base (0.23.1-2+b1) ... Setting up m4 (1.4.20-2) ... Setting up libxcb-shm0:amd64 (1.17.0-2+b1) ... Setting up file (1:5.46-5) ... Setting up libtext-wrapi18n-perl (0.06-10) ... Setting up libelf1t64:amd64 (0.193-3) ... Setting up libfontenc1:amd64 (1:1.1.8-1+b2) ... Setting up autotools-dev (20240727.1) ... Setting up libzzip-0-13t64:amd64 (0.13.78+dfsg.1-0.2) ... 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Setting up xdg-utils (1.2.1-2) ... update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode Setting up libsynctex2:amd64 (2025.20250727.75242+ds-4) ... Setting up libpotrace0:amd64 (1.16-2+b2) ... Setting up automake (1:1.18.1-2) ... update-alternatives: using /usr/bin/automake-1.18 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up libice6:amd64 (2:1.1.1-1) ... Setting up gettext (0.23.1-2+b1) ... Setting up libxpm4:amd64 (1:3.5.17-1+b3) ... Setting up libxrender1:amd64 (1:0.9.12-1) ... Setting up libtool (2.5.4-7) ... Setting up fontconfig-config (2.15.0-2.4) ... Setting up libxext6:amd64 (2:1.3.4-1+b3) ... Setting up libpaper-utils (2.2.5-0.3+b2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (21) ... Setting up libglib2.0-0t64:amd64 (2.86.1-1) ... No schema files found: doing nothing. Setting up libptexenc1:amd64 (2025.20250727.75242+ds-4) ... Setting up libfreetype6:amd64 (2.13.3+dfsg-1) ... Setting up ucf (3.0052) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up groff-base (1.23.0-9) ... Setting up libharfbuzz0b:amd64 (12.1.0-1) ... Setting up libfontconfig1:amd64 (2.15.0-2.4) ... Setting up libsm6:amd64 (2:1.2.6-1) ... Setting up libxi6:amd64 (2:1.8.2-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up xfonts-utils (1:7.7+7) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libcairo2:amd64 (1.18.4-1+b1) ... Setting up tex-common (6.19) ... update-language: texlive-base not installed and configured, doing nothing! Setting up libxt6t64:amd64 (1:1.2.1-1.3) ... Setting up lmodern (2.005-1) ... Setting up libxmu6:amd64 (2:1.1.3-3+b4) ... Setting up debhelper (13.28) ... Setting up libxaw7:amd64 (2:1.0.16-1) ... Setting up texlive-binaries (2025.20250727.75242+ds-4) ... update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode Setting up texlive-base (2025.20250927-3) ... tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex Setting up texlive-luatex (2025.20250927-3) ... Setting up texlive-latex-base (2025.20250927-3) ... Setting up texlive-latex-recommended (2025.20250927-3) ... Setting up texlive-fonts-recommended (2025.20250927-3) ... Processing triggers for libc-bin (2.41-12) ... Processing triggers for tex-common (6.19) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Building format(s) --all. This may take some time... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/mummer-3.23+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../mummer_3.23+dfsg-8_source.changes dpkg-buildpackage: info: source package mummer dpkg-buildpackage: info: source version 3.23+dfsg-8 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_auto_clean make -j40 clean make[1]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg' rm -f *~ core* cd /build/reproducible-path/mummer-3.23+dfsg/src/kurtz; make clean make[2]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg/src/kurtz' rm -f *~ cd libbasedir; make clean make[3]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir' rm -f *.splint rm -f *.[oa] *.dbg.o *.inc *.aux *.dvi *.log *~ make[3]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir' cd streesrc; make clean make[3]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc' rm -f *.splint rm -f *.[aox] *~ make[3]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc' cd mm3src; make clean make[3]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/mm3src' rm -f *.splint rm -f *.[ox] shit[123] *~ cd /build/reproducible-path/mummer-3.23+dfsg; rm -f maxmat3.x maxmat3.dbg.x mummer make[3]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/mm3src' make[2]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg/src/kurtz' cd /build/reproducible-path/mummer-3.23+dfsg/src/tigr; make clean make[2]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg/src/tigr' rm -f *.o *~ cd /build/reproducible-path/mummer-3.23+dfsg; rm -f annotate combineMUMs delta-filter gaps mgaps postnuc postpro prenuc prepro repeat-match show-aligns show-coords show-tiling show-snps show-diff delta2blocks delta2maf cd /build/reproducible-path/mummer-3.23+dfsg/aux_bin; rm -f annotate combineMUMs delta-filter gaps mgaps postnuc postpro prenuc prepro repeat-match show-aligns show-coords show-tiling show-snps show-diff delta2blocks delta2maf make[2]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg/src/tigr' cd /build/reproducible-path/mummer-3.23+dfsg/scripts; make clean make[2]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg/scripts' rm -f *~ cd /build/reproducible-path/mummer-3.23+dfsg; rm -f exact-tandems mapview mummerplot nucmer promer run-mummer1 run-mummer3 nucmer2xfig dnadiff make[2]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg/scripts' cd /build/reproducible-path/mummer-3.23+dfsg/docs; make clean make[2]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg/docs' rm -f *.dvi *.aux *.log *.out *~ maxmat3man.pdf make[2]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg/docs' make[1]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg' [ -d /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin ] || mkdir -p /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin [ -d /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/lib/mummer ] || mkdir -p /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/lib/mummer dh_auto_build -- BIN_DIR=/build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin AUX_BIN_DIR=/build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/lib/mummer \ FINAL_BIN_DIR=/usr/bin FINAL_AUX_BIN_DIR=/usr/lib/mummer \ FINAL_SCRIPT_DIR=/usr/share/perl5/ \ CFLAGS="-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc" CXXFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection" LDFLAGS="-Wl,-z,relro -Wl,-z,now" make -j40 INSTALL="install --strip-program=true" BIN_DIR=/build/reproducible-path/mummer-3.23\+dfsg/debian/tmp/usr/bin AUX_BIN_DIR=/build/reproducible-path/mummer-3.23\+dfsg/debian/tmp/usr/lib/mummer FINAL_BIN_DIR=/usr/bin FINAL_AUX_BIN_DIR=/usr/lib/mummer FINAL_SCRIPT_DIR=/usr/share/perl5/ CFLAGS="-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc" CXXFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection" LDFLAGS="-Wl,-z,relro -Wl,-z,now" make[2]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg' cd /build/reproducible-path/mummer-3.23+dfsg/src/kurtz; make mummer cd /build/reproducible-path/mummer-3.23+dfsg/src/tigr; make CFLAGS="-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc" CXXFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection" LDFLAGS="-Wl,-z,relro -Wl,-z,now" all cd /build/reproducible-path/mummer-3.23+dfsg/scripts; make all make[3]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg/src/kurtz' cd libbasedir; make libbase.a make[3]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg/scripts' make[3]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg/src/tigr' /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 tigrinc.cc -c -o tigrinc.o /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 delta.cc -c -o delta.o /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 sw_align.cc -c -o sw_align.o /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 translate.cc -c -o translate.o make[4]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir' /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cleanMUMcand.o cleanMUMcand.c /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o clock.o clock.c cp -a ../debian/sh-replacement-scripts/exact-tandems /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mapfile.o mapfile.c /usr/bin/sed -e 's?__PERL_PATH?/usr/bin/perl?g' \ -e 's?__SCRIPT_DIR?/usr/share/perl5/?g' \ mapview.pl > /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/mapview /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o multiseq.o multiseq.c /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o procopt.o procopt.c /usr/bin/sed -e 's?__PERL_PATH?/usr/bin/perl?g' \ -e 's?__SCRIPT_DIR?/usr/share/perl5/?g' \ -e 's?__BIN_DIR?/usr/bin?g' \ mummerplot.pl > /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/mummerplot /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o safescpy.o safescpy.c /usr/bin/sed -e 's?__PERL_PATH?/usr/bin/perl?g' \ -e 's?__SCRIPT_DIR?/usr/share/perl5/?g' \ -e 's?__AUX_BIN_DIR?/usr/lib/mummer?g' \ -e 's?__BIN_DIR?/usr/bin?g' \ nucmer.pl > /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/nucmer /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o seterror.o seterror.c chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/exact-tandems /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o space.o space.c /usr/bin/sed -e 's?__PERL_PATH?/usr/bin/perl?g' \ -e 's?__SCRIPT_DIR?/usr/share/perl5/?g' \ -e 's?__AUX_BIN_DIR?/usr/lib/mummer?g' \ -e 's?__BIN_DIR?/usr/bin?g' \ promer.pl > /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/promer chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/mapview chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/mummerplot cp -a ../debian/sh-replacement-scripts/run-mummer1 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin cp -a ../debian/sh-replacement-scripts/run-mummer3 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/nucmer /usr/bin/sed -e 's?__PERL_PATH?/usr/bin/perl?g' \ nucmer2xfig.pl > /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/nucmer2xfig /usr/bin/sed -e 's?__PERL_PATH?/usr/bin/perl?g' \ -e 's?__SCRIPT_DIR?/usr/share/perl5/?g' \ -e 's?__BIN_DIR?/usr/bin?g' \ dnadiff.pl > /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/dnadiff chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/run-mummer1 chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/promer chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/run-mummer3 chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/nucmer2xfig chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/dnadiff make[3]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg/scripts' ar sruv libbase.a cleanMUMcand.o clock.o mapfile.o multiseq.o procopt.o safescpy.o seterror.o space.o ar: `u' modifier ignored since `D' is the default (see `U') ar: creating libbase.a a - cleanMUMcand.o a - clock.o a - mapfile.o a - multiseq.o a - procopt.o a - safescpy.o a - seterror.o a - space.o make[4]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir' cd streesrc; make libstree.a make[4]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc' /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o construct.o construct.c /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o access.o access.c /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o scanpref.o scanpref.c /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o linkloc.o linkloc.c /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o depthtab.o depthtab.c /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ex2leav.o ex2leav.c /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o dfs.o dfs.c /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o overmax.o overmax.c /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o oversucc.o oversucc.c /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o addleafcount.o addleafcount.c /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o iterator.o iterator.c tigrinc.cc: In function 'int Read_String(FILE*, char*&, long int&, char*, int)': tigrinc.cc:335:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 335 | fgets (Line, MAX_LINE, fp); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ tigrinc.cc: In function 'int Read_File(FILE*, long int&, std::map, char*>&, int)': tigrinc.cc:452:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 452 | fgets (Line, MAX_LINE, fp); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ar sruv libstree.a construct.o access.o scanpref.o linkloc.o depthtab.o ex2leav.o dfs.o overmax.o oversucc.o addleafcount.o iterator.o ar: `u' modifier ignored since `D' is the default (see `U') ar: creating libstree.a a - construct.o a - access.o a - scanpref.o a - linkloc.o a - depthtab.o a - ex2leav.o a - dfs.o a - overmax.o a - oversucc.o a - addleafcount.o a - iterator.o make[4]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc' cd mm3src; make mummer make[4]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/mm3src' /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -I../streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o maxmat3.o maxmat3.c /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -I../streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o maxmatopt.o maxmatopt.c /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -I../streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o maxmatinp.o maxmatinp.c /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -I../streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o findmumcand.o findmumcand.c /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -I../streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o findmaxmat.o findmaxmat.c /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -I../streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o procmaxmat.o procmaxmat.c /usr/bin/gcc -Wl,-z,relro -Wl,-z,now maxmat3.o maxmatopt.o maxmatinp.o findmumcand.o findmaxmat.o procmaxmat.o ../streesrc/libstree.a ../libbasedir/libbase.a \ -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/mummer; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/mummer make[4]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/mm3src' make[3]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg/src/kurtz' /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now annotate.cc tigrinc.o -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/annotate; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/annotate /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now combineMUMs.cc tigrinc.o -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/combineMUMs; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/combineMUMs /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now gaps.cc tigrinc.o -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/gaps; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/gaps /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now mgaps.cc tigrinc.o -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/mgaps; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/mgaps /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now postnuc.cc tigrinc.o sw_align.o -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/lib/mummer/postnuc; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/lib/mummer/postnuc /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now postpro.cc tigrinc.o sw_align.o translate.o -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/lib/mummer/postpro; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/lib/mummer/postpro /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now prenuc.cc tigrinc.o -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/lib/mummer/prenuc; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/lib/mummer/prenuc /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now prepro.cc tigrinc.o translate.o -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/lib/mummer/prepro; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/lib/mummer/prepro /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now repeat-match.cc tigrinc.o -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/repeat-match; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/repeat-match combineMUMs.cc:26:38: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 26 | #define DEFAULT_ERROR_FILE_NAME "witherrors.gaps" | ^~~~~~~~~~~~~~~~~ combineMUMs.cc:109:27: note: in expansion of macro 'DEFAULT_ERROR_FILE_NAME' 109 | char * Error_File_Name = DEFAULT_ERROR_FILE_NAME; | ^~~~~~~~~~~~~~~~~~~~~~~ combineMUMs.cc:135:24: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 135 | char * Query_Suffix = "Query"; | ^~~~~~~ combineMUMs.cc:145:22: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 145 | char * Ref_Suffix = "Ref"; | ^~~~~ mgaps.cc: In function 'int Process_Cluster(Match_t*, int, char*)': mgaps.cc:533:20: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 533 | label = "#\n"; | ^~~~~ mgaps.cc: In function 'void Process_Matches(Match_t*, int, char*)': mgaps.cc:620:19: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 620 | label = "#\n"; | ^~~~~ combineMUMs.cc: In function 'int Read_String(FILE*, char**, long int*, char*)': combineMUMs.cc:1481:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 1481 | fgets (Line, MAX_LINE, fp); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now delta-filter.cc tigrinc.o delta.o -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/delta-filter; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/delta-filter /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now show-aligns.cc tigrinc.o translate.o delta.o -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/show-aligns; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/show-aligns /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now show-coords.cc tigrinc.o delta.o -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/show-coords; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/show-coords /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now show-tiling.cc tigrinc.o delta.o -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/show-tiling; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/show-tiling /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now show-snps.cc tigrinc.o translate.o delta.o -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/show-snps; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/show-snps /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now show-diff.cc tigrinc.o delta.o -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/show-diff; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/show-diff /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now delta2blocks.cc tigrinc.o translate.o delta.o -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/delta2blocks; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/delta2blocks /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now delta2maf.cc tigrinc.o translate.o delta.o -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/delta2maf; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/delta2maf delta2blocks.cc: In function 'void printAlignments(std::vector, char*, char*, char*, char*)': delta2blocks.cc:408:23: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long int' [-Wformat=] 408 | printf ("%s %s %d %d %d %d ",IdR,IdQ, Ap->sR,Ap->eR,Ap->sQ,Ap->eQ); | ~^ ~~~~~~ | | | | int long int | %ld delta2blocks.cc:408:26: warning: format '%d' expects argument of type 'int', but argument 5 has type 'long int' [-Wformat=] 408 | printf ("%s %s %d %d %d %d ",IdR,IdQ, Ap->sR,Ap->eR,Ap->sQ,Ap->eQ); | ~^ ~~~~~~ | | | | int long int | %ld delta2blocks.cc:408:29: warning: format '%d' expects argument of type 'int', but argument 6 has type 'long int' [-Wformat=] 408 | printf ("%s %s %d %d %d %d ",IdR,IdQ, Ap->sR,Ap->eR,Ap->sQ,Ap->eQ); | ~^ ~~~~~~ | | | | int long int | %ld delta2blocks.cc:408:32: warning: format '%d' expects argument of type 'int', but argument 7 has type 'long int' [-Wformat=] 408 | printf ("%s %s %d %d %d %d ",IdR,IdQ, Ap->sR,Ap->eR,Ap->sQ,Ap->eQ); | ~^ ~~~~~~ | | | | int long int | %ld delta2maf.cc: In function 'void printAlignments(std::vector, char*, char*, std::map, char*>&)': delta2maf.cc:547:24: warning: format '%d' expects argument of type 'int', but argument 2 has type 'long int' [-Wformat=] 547 | printf("a score=%d\n",abs(Ap->eR - Ap->sR)); | ~^ ~~~~~~~~~~~~~~~~~~~~ | | | | int long int | %ld delta2maf.cc:587:27: warning: format '%d' expects argument of type 'int', but argument 3 has type 'long int' [-Wformat=] 587 | printf("s %s %d %d %s %d ", IdQ, sQ-1, eQ-sQ+1, "-",SeqLenQ); | ~^ ~~~~ | | | | int long int | %ld delta2maf.cc:587:30: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long int' [-Wformat=] 587 | printf("s %s %d %d %s %d ", IdQ, sQ-1, eQ-sQ+1, "-",SeqLenQ); | ~^ ~~~~~~~ | | | | int long int | %ld delta2maf.cc:587:36: warning: format '%d' expects argument of type 'int', but argument 6 has type 'long int' [-Wformat=] 587 | printf("s %s %d %d %s %d ", IdQ, sQ-1, eQ-sQ+1, "-",SeqLenQ); | ~^ ~~~~~~~ | | | | int long int | %ld delta2maf.cc:590:27: warning: format '%d' expects argument of type 'int', but argument 3 has type 'long int' [-Wformat=] 590 | printf("s %s %d %d %s %d ", IdQ, sQ-1, eQ-sQ+1, "+",SeqLenQ); | ~^ ~~~~ | | | | int long int | %ld delta2maf.cc:590:30: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long int' [-Wformat=] 590 | printf("s %s %d %d %s %d ", IdQ, sQ-1, eQ-sQ+1, "+",SeqLenQ); | ~^ ~~~~~~~ | | | | int long int | %ld delta2maf.cc:590:36: warning: format '%d' expects argument of type 'int', but argument 6 has type 'long int' [-Wformat=] 590 | printf("s %s %d %d %s %d ", IdQ, sQ-1, eQ-sQ+1, "+",SeqLenQ); | ~^ ~~~~~~~ | | | | int long int | %ld delta2maf.cc:597:27: warning: format '%d' expects argument of type 'int', but argument 3 has type 'long int' [-Wformat=] 597 | printf("s %s %d %d %s %d ", IdR, sR-1, eR-sR+1, "-",SeqLenR); | ~^ ~~~~ | | | | int long int | %ld delta2maf.cc:597:30: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long int' [-Wformat=] 597 | printf("s %s %d %d %s %d ", IdR, sR-1, eR-sR+1, "-",SeqLenR); | ~^ ~~~~~~~ | | | | int long int | %ld delta2maf.cc:597:36: warning: format '%d' expects argument of type 'int', but argument 6 has type 'long int' [-Wformat=] 597 | printf("s %s %d %d %s %d ", IdR, sR-1, eR-sR+1, "-",SeqLenR); | ~^ ~~~~~~~ | | | | int long int | %ld delta2maf.cc:600:27: warning: format '%d' expects argument of type 'int', but argument 3 has type 'long int' [-Wformat=] 600 | printf("s %s %d %d %s %d ", IdR, sR-1, eR-sR+1, "+",SeqLenR); | ~^ ~~~~ | | | | int long int | %ld delta2maf.cc:600:30: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long int' [-Wformat=] 600 | printf("s %s %d %d %s %d ", IdR, sR-1, eR-sR+1, "+",SeqLenR); | ~^ ~~~~~~~ | | | | int long int | %ld delta2maf.cc:600:36: warning: format '%d' expects argument of type 'int', but argument 6 has type 'long int' [-Wformat=] 600 | printf("s %s %d %d %s %d ", IdR, sR-1, eR-sR+1, "+",SeqLenR); | ~^ ~~~~~~~ | | | | int long int | %ld delta2maf.cc:633:34: warning: format '%s' expects argument of type 'char*', but argument 2 has type 'char (*)[(Screen_Width + 1)]' [-Wformat=] 633 | printf("%s", &Buff2); | ~^ ~~~~~~ | | | | | char (*)[(Screen_Width + 1)] | char* delta2maf.cc:637:34: warning: format '%s' expects argument of type 'char*', but argument 2 has type 'char (*)[(Screen_Width + 1)]' [-Wformat=] 637 | printf("%s", &Buff1); | ~^ ~~~~~~ | | | | | char (*)[(Screen_Width + 1)] | char* delta2maf.cc:659:28: warning: format '%s' expects argument of type 'char*', but argument 2 has type 'char (*)[(Screen_Width + 1)]' [-Wformat=] 659 | printf("%s", &Buff2); | ~^ ~~~~~~ | | | | | char (*)[(Screen_Width + 1)] | char* delta2maf.cc:663:28: warning: format '%s' expects argument of type 'char*', but argument 2 has type 'char (*)[(Screen_Width + 1)]' [-Wformat=] 663 | printf("%s", &Buff1); | ~^ ~~~~~~ | | | | | char (*)[(Screen_Width + 1)] | char* show-coords.cc: In function 'void printBtab(std::vector)': show-coords.cc:799:12: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 799 | type = "NUCMER"; | ^~~~~~~~ show-coords.cc:801:12: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 801 | type = "PROMER"; | ^~~~~~~~ show-coords.cc:803:12: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 803 | type = "NULL"; | ^~~~~~ delta2maf.cc:710:30: warning: format '%s' expects argument of type 'char*', but argument 2 has type 'char (*)[(Screen_Width + 1)]' [-Wformat=] 710 | printf("%s", &Buff2); | ~^ ~~~~~~ | | | | | char (*)[(Screen_Width + 1)] | char* delta2maf.cc:714:30: warning: format '%s' expects argument of type 'char*', but argument 2 has type 'char (*)[(Screen_Width + 1)]' [-Wformat=] 714 | printf("%s", &Buff1); | ~^ ~~~~~~ | | | | | char (*)[(Screen_Width + 1)] | char* delta2maf.cc:732:24: warning: format '%s' expects argument of type 'char*', but argument 2 has type 'char (*)[(Screen_Width + 1)]' [-Wformat=] 732 | printf("%s", &Buff2); | ~^ ~~~~~~ | | | | | char (*)[(Screen_Width + 1)] | char* delta2maf.cc:736:24: warning: format '%s' expects argument of type 'char*', but argument 2 has type 'char (*)[(Screen_Width + 1)]' [-Wformat=] 736 | printf("%s", &Buff1); | ~^ ~~~~~~ | | | | | char (*)[(Screen_Width + 1)] | char* make[3]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg/src/tigr' make[2]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg' /usr/bin/make -C docs make[2]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg/docs' pdflatex maxmat3man This is pdfTeX, Version 3.141592653-2.6-1.40.28 (TeX Live 2025/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./maxmat3man.tex LaTeX2e <2025-06-01> patch level 1 L3 programming layer <2025-09-02> (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls Document Class: article 2025/01/22 v1.4n Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo)) (/usr/share/texlive/texmf-dist/tex/latex/ntgclass/a4.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) (./skaff.sty) (./optionman.sty) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd) (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) No file maxmat3man.aux. (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) LaTeX Warning: Reference `SecBasicNotions' on page 1 undefined on input line 36 . Overfull \hbox (4.79204pt too wide) in paragraph at lines 60--61 \OT1/ptm/m/n/12 Compute \OT1/ptm/m/it/12 MUM\OT1/ptm/m/n/12 -candidates, i.e. m atches that are unique in the reference-sequence [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}{/usr/share/texlive/texmf- dist/fonts/enc/dvips/base/8r.enc}] LaTeX Warning: Reference `SecBasicNotions' on page 2 undefined on input line 10 4. [2] [3] Overfull \hbox (8.54073pt too wide) in paragraph at lines 225--225 []\OT1/pcr/m/n/10.95 # ........................................................ ......[] [4] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALL2_BOVIN|ALLERGEN 139 1 155 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALG3_YEAST|PUTATIVE 425 2 904 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALF_TRYBB|FRUCTOSE-BISPHOSPHATE 177 4 794 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALGB_YEAST|ALG11 114 12 599 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALR_SYNY3|ALANINE 354 33 261 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALGB_PSEAE|ALGINATE 212 40 991 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALGB_PSEAE|ALGINATE 314 41 093 7[] [5] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALGB_PSEAE|ALGINATE 360 41 138 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALR_SYNY3|ALANINE 79 44 186 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALP_CEPAC|ALKALINE 366 45 304 7[] [6] [7] (./maxmat3man.aux) LaTeX Warning: There were undefined references. LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. ) (see the transcript file for additional information)< /usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmb8a.pfb> Output written on maxmat3man.pdf (7 pages, 132594 bytes). Transcript written on maxmat3man.log. pdflatex maxmat3man This is pdfTeX, Version 3.141592653-2.6-1.40.28 (TeX Live 2025/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./maxmat3man.tex LaTeX2e <2025-06-01> patch level 1 L3 programming layer <2025-09-02> (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls Document Class: article 2025/01/22 v1.4n Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo)) (/usr/share/texlive/texmf-dist/tex/latex/ntgclass/a4.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) (./skaff.sty) (./optionman.sty) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd) (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) (./maxmat3man.aux) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) Overfull \hbox (4.79204pt too wide) in paragraph at lines 60--61 \OT1/ptm/m/n/12 Compute \OT1/ptm/m/it/12 MUM\OT1/ptm/m/n/12 -candidates, i.e. m atches that are unique in the reference-sequence [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}{/usr/share/texlive/texmf- dist/fonts/enc/dvips/base/8r.enc}] [2] [3] Overfull \hbox (8.54073pt too wide) in paragraph at lines 225--225 []\OT1/pcr/m/n/10.95 # ........................................................ ......[] [4] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALL2_BOVIN|ALLERGEN 139 1 155 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALG3_YEAST|PUTATIVE 425 2 904 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALF_TRYBB|FRUCTOSE-BISPHOSPHATE 177 4 794 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALGB_YEAST|ALG11 114 12 599 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALR_SYNY3|ALANINE 354 33 261 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALGB_PSEAE|ALGINATE 212 40 991 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALGB_PSEAE|ALGINATE 314 41 093 7[] [5] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALGB_PSEAE|ALGINATE 360 41 138 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALR_SYNY3|ALANINE 79 44 186 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALP_CEPAC|ALKALINE 366 45 304 7[] [6] [7] (./maxmat3man.aux) ) (see the transcript file for additional information)< /usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmb8a.pfb> Output written on maxmat3man.pdf (7 pages, 131942 bytes). Transcript written on maxmat3man.log. make[2]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg/docs' make[1]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg' dh_auto_test make -j40 check make[1]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg' check complete make[1]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg' create-stamp debian/debhelper-build-stamp debian/rules override_dh_prep make[1]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg' dh_prep -X debian/tmp make[1]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg' debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg' mv /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/annotate /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/mummer-annotate make[1]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg' dh_install dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism debian/rules override_dh_compress make[1]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg' dh_compress -Xpdf make[1]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg' dh_fixperms dh_missing dh_dwz -a dwz: debian/mummer/usr/bin/mummer: DWARF compression not beneficial - old size 63722 new size 63975 dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'mummer-dbgsym' in '../mummer-dbgsym_3.23+dfsg-8_amd64.deb'. dpkg-deb: building package 'mummer' in '../mummer_3.23+dfsg-8_amd64.deb'. dpkg-deb: building package 'mummer-doc' in '../mummer-doc_3.23+dfsg-8_all.deb'. dpkg-genbuildinfo --build=binary -O../mummer_3.23+dfsg-8_amd64.buildinfo dpkg-genchanges --build=binary -O../mummer_3.23+dfsg-8_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1863848 and its subdirectories I: Current time: Thu Oct 30 15:54:02 -12 2025 I: pbuilder-time-stamp: 1761882842 Fri Oct 31 03:54:02 UTC 2025 I: Signing ./b1/mummer_3.23+dfsg-8_amd64.buildinfo as mummer_3.23+dfsg-8_amd64.buildinfo.asc Fri Oct 31 03:54:02 UTC 2025 I: Signed ./b1/mummer_3.23+dfsg-8_amd64.buildinfo as ./b1/mummer_3.23+dfsg-8_amd64.buildinfo.asc Fri Oct 31 03:54:02 UTC 2025 - build #1 for mummer/forky/amd64 on ionos11-amd64 done. Starting cleanup. All cleanup done. Fri Oct 31 03:54:02 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-dOo3FDBW, removing. /srv/reproducible-results/rbuild-debian/r-b-build.Dw5QbLMR: total 16 drwxrwxr-x 2 jenkins jenkins 4096 Oct 31 03:54 b1 drwxrwxr-x 2 jenkins jenkins 4096 Oct 31 03:50 b2 -rw-rw-r-- 1 jenkins jenkins 2173 Dec 4 2022 mummer_3.23+dfsg-8.dsc -rw------- 1 jenkins jenkins 3283 Oct 31 03:50 rbuildlog.LGdbpp4 /srv/reproducible-results/rbuild-debian/r-b-build.Dw5QbLMR/b1: total 5684 -rw-r--r-- 1 jenkins jenkins 97838 Oct 31 03:54 build.log -rw-r--r-- 1 jenkins jenkins 3288200 Oct 31 03:54 mummer-dbgsym_3.23+dfsg-8_amd64.deb -rw-r--r-- 1 jenkins jenkins 1312988 Oct 31 03:54 mummer-doc_3.23+dfsg-8_all.deb -rw-r--r-- 1 jenkins jenkins 416352 Oct 31 03:54 mummer_3.23+dfsg-8.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2173 Oct 31 03:54 mummer_3.23+dfsg-8.dsc -rw-r--r-- 1 jenkins jenkins 6960 Oct 31 03:54 mummer_3.23+dfsg-8_amd64.buildinfo -rw-rw-r-- 1 jenkins jenkins 7842 Oct 31 03:54 mummer_3.23+dfsg-8_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1881 Oct 31 03:54 mummer_3.23+dfsg-8_amd64.changes -rw-r--r-- 1 jenkins jenkins 670380 Oct 31 03:54 mummer_3.23+dfsg-8_amd64.deb -rw-r--r-- 1 jenkins jenkins 1421 Oct 31 03:54 mummer_3.23+dfsg-8_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.Dw5QbLMR/b2: total 0 Fri Oct 31 03:54:02 UTC 2025 I: Deleting $TMPDIR on ionos11-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Oct 30 15:50:43 -12 2025 I: pbuilder-time-stamp: 1761882643 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [mummer_3.23+dfsg-8.dsc] I: copying [./mummer_3.23+dfsg.orig.tar.xz] I: copying [./mummer_3.23+dfsg-8.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./mummer_3.23+dfsg-8.dsc: no acceptable signature found dpkg-source: info: extracting mummer in mummer-3.23+dfsg dpkg-source: info: unpacking mummer_3.23+dfsg.orig.tar.xz dpkg-source: info: unpacking mummer_3.23+dfsg-8.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 10_install_dirs.patch dpkg-source: info: applying 02at_docs_web.diff dpkg-source: info: applying enable_building_with_tetex.patch dpkg-source: info: applying fix_sf_privacy_breach_issue.patch dpkg-source: info: applying hardening.patch dpkg-source: info: applying spelling.patch dpkg-source: info: applying addition_from_mugsy.patch dpkg-source: info: applying 0009-improve-performance-of-delta2maf.patch dpkg-source: info: applying mummerplot.patch dpkg-source: info: applying remove-csh-dependency.patch dpkg-source: info: applying remove-csh-from-doc.patch dpkg-source: info: applying reproducible-build.patch dpkg-source: info: applying gnuplot.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1863848/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' DISTRIBUTION='forky' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='a5f9f4c6e301411d9925024a2e4889e0' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1863848' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Dw5QbLMR/pbuilderrc_W9nx --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Dw5QbLMR/b1 --logfile b1/build.log mummer_3.23+dfsg-8.dsc' SUDO_GID='111' SUDO_HOME='/var/lib/jenkins' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos11-amd64 6.12.48+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.48-1 (2025-09-20) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1863848/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), texlive-latex-base, texlive-latex-recommended, texlive-fonts-recommended dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19869 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on texlive-latex-base; however: Package texlive-latex-base is not installed. pbuilder-satisfydepends-dummy depends on texlive-latex-recommended; however: Package texlive-latex-recommended is not installed. pbuilder-satisfydepends-dummy depends on texlive-fonts-recommended; however: Package texlive-fonts-recommended is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-lmodern{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbrotli1{a} libcairo2{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfontenc1{a} libfreetype6{a} libglib2.0-0t64{a} libgraphite2-3{a} libharfbuzz0b{a} libice6{a} libicu76{a} libkpathsea6{a} libmagic-mgc{a} libmagic1t64{a} libmpfi0{a} libpaper-utils{a} libpaper2{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libpotrace0{a} libproc2-0{a} libptexenc1{a} libsm6{a} libsynctex2{a} libteckit0{a} libtexlua53-5{a} libtext-charwidth-perl{a} libtext-wrapi18n-perl{a} libtool{a} libuchardet0{a} libunistring5{a} libx11-6{a} libx11-data{a} libxau6{a} libxaw7{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxi6{a} libxml2-16{a} libxmu6{a} libxpm4{a} libxrender1{a} libxt6t64{a} libzzip-0-13t64{a} lmodern{a} m4{a} man-db{a} po-debconf{a} procps{a} sensible-utils{a} t1utils{a} tex-common{a} texlive-base{a} texlive-binaries{a} texlive-fonts-recommended{a} texlive-latex-base{a} texlive-latex-recommended{a} texlive-luatex{a} ucf{a} x11-common{a} xdg-utils{a} xfonts-encodings{a} xfonts-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl dvisvgm libarchive-cpio-perl libfile-mimeinfo-perl libglib2.0-data libltdl-dev libmail-sendmail-perl libnet-dbus-perl libx11-protocol-perl linux-sysctl-defaults lynx psmisc shared-mime-info tex-gyre tipa wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 90 newly installed, 0 to remove and 0 not upgraded. Need to get 128 MB of archives. After unpacking 364 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian forky/main amd64 libexpat1 amd64 2.7.3-1 [112 kB] Get: 2 http://deb.debian.org/debian forky/main amd64 libproc2-0 amd64 2:4.0.4-9 [65.6 kB] Get: 3 http://deb.debian.org/debian forky/main amd64 procps amd64 2:4.0.4-9 [882 kB] Get: 4 http://deb.debian.org/debian forky/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get: 5 http://deb.debian.org/debian forky/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 6 http://deb.debian.org/debian forky/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 7 http://deb.debian.org/debian forky/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 8 http://deb.debian.org/debian forky/main amd64 gettext-base amd64 0.23.1-2+b1 [244 kB] Get: 9 http://deb.debian.org/debian forky/main amd64 libuchardet0 amd64 0.0.8-2 [68.5 kB] Get: 10 http://deb.debian.org/debian forky/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 11 http://deb.debian.org/debian forky/main amd64 bsdextrautils amd64 2.41.2-4 [98.5 kB] Get: 12 http://deb.debian.org/debian forky/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 13 http://deb.debian.org/debian forky/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 14 http://deb.debian.org/debian forky/main amd64 libtext-charwidth-perl amd64 0.04-11+b4 [9476 B] Get: 15 http://deb.debian.org/debian forky/main amd64 libtext-wrapi18n-perl all 0.06-10 [8808 B] Get: 16 http://deb.debian.org/debian forky/main amd64 ucf all 3.0052 [43.3 kB] Get: 17 http://deb.debian.org/debian forky/main amd64 m4 amd64 1.4.20-2 [325 kB] Get: 18 http://deb.debian.org/debian forky/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 19 http://deb.debian.org/debian forky/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 20 http://deb.debian.org/debian forky/main amd64 automake all 1:1.18.1-2 [877 kB] Get: 21 http://deb.debian.org/debian forky/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 22 http://deb.debian.org/debian forky/main amd64 libdebhelper-perl all 13.28 [92.4 kB] Get: 23 http://deb.debian.org/debian forky/main amd64 libtool all 2.5.4-7 [540 kB] Get: 24 http://deb.debian.org/debian forky/main amd64 dh-autoreconf all 21 [12.2 kB] Get: 25 http://deb.debian.org/debian forky/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 26 http://deb.debian.org/debian forky/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 27 http://deb.debian.org/debian forky/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 28 http://deb.debian.org/debian forky/main amd64 libelf1t64 amd64 0.193-3 [192 kB] Get: 29 http://deb.debian.org/debian forky/main amd64 dwz amd64 0.16-2 [108 kB] Get: 30 http://deb.debian.org/debian forky/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 31 http://deb.debian.org/debian forky/main amd64 libxml2-16 amd64 2.14.6+dfsg-0.1 [651 kB] Get: 32 http://deb.debian.org/debian forky/main amd64 gettext amd64 0.23.1-2+b1 [1680 kB] Get: 33 http://deb.debian.org/debian forky/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 34 http://deb.debian.org/debian forky/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 35 http://deb.debian.org/debian forky/main amd64 debhelper all 13.28 [941 kB] Get: 36 http://deb.debian.org/debian forky/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 37 http://deb.debian.org/debian forky/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 38 http://deb.debian.org/debian forky/main amd64 fontconfig-config amd64 2.15.0-2.4 [318 kB] Get: 39 http://deb.debian.org/debian forky/main amd64 fonts-lmodern all 2.005-1 [4540 kB] Get: 40 http://deb.debian.org/debian forky/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get: 41 http://deb.debian.org/debian forky/main amd64 libpng16-16t64 amd64 1.6.50-1 [282 kB] Get: 42 http://deb.debian.org/debian forky/main amd64 libfreetype6 amd64 2.13.3+dfsg-1 [452 kB] Get: 43 http://deb.debian.org/debian forky/main amd64 libfontconfig1 amd64 2.15.0-2.4 [401 kB] Get: 44 http://deb.debian.org/debian forky/main amd64 libpixman-1-0 amd64 0.46.4-1 [259 kB] Get: 45 http://deb.debian.org/debian forky/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB] Get: 46 http://deb.debian.org/debian forky/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB] Get: 47 http://deb.debian.org/debian forky/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB] Get: 48 http://deb.debian.org/debian forky/main amd64 libx11-data all 2:1.8.12-1 [343 kB] Get: 49 http://deb.debian.org/debian forky/main amd64 libx11-6 amd64 2:1.8.12-1 [815 kB] Get: 50 http://deb.debian.org/debian forky/main amd64 libxcb-render0 amd64 1.17.0-2+b1 [115 kB] Get: 51 http://deb.debian.org/debian forky/main amd64 libxcb-shm0 amd64 1.17.0-2+b1 [105 kB] Get: 52 http://deb.debian.org/debian forky/main amd64 libxext6 amd64 2:1.3.4-1+b3 [50.4 kB] Get: 53 http://deb.debian.org/debian forky/main amd64 libxrender1 amd64 1:0.9.12-1 [27.9 kB] Get: 54 http://deb.debian.org/debian forky/main amd64 libcairo2 amd64 1.18.4-1+b1 [538 kB] Get: 55 http://deb.debian.org/debian forky/main amd64 libffi8 amd64 3.5.2-2 [25.5 kB] Get: 56 http://deb.debian.org/debian forky/main amd64 libfontenc1 amd64 1:1.1.8-1+b2 [23.3 kB] Get: 57 http://deb.debian.org/debian forky/main amd64 libglib2.0-0t64 amd64 2.86.1-1 [1546 kB] Get: 58 http://deb.debian.org/debian forky/main amd64 libgraphite2-3 amd64 1.3.14-11 [76.7 kB] Get: 59 http://deb.debian.org/debian forky/main amd64 libharfbuzz0b amd64 12.1.0-1 [530 kB] Get: 60 http://deb.debian.org/debian forky/main amd64 x11-common all 1:7.7+26 [217 kB] Get: 61 http://deb.debian.org/debian forky/main amd64 libice6 amd64 2:1.1.1-1 [65.4 kB] Get: 62 http://deb.debian.org/debian forky/main amd64 libicu76 amd64 76.1-4 [9722 kB] Get: 63 http://deb.debian.org/debian forky/main amd64 libkpathsea6 amd64 2025.20250727.75242+ds-4 [154 kB] Get: 64 http://deb.debian.org/debian forky/main amd64 libmpfi0 amd64 1.5.4+ds-4 [35.5 kB] Get: 65 http://deb.debian.org/debian forky/main amd64 libpaper2 amd64 2.2.5-0.3+b2 [16.7 kB] Get: 66 http://deb.debian.org/debian forky/main amd64 libpaper-utils amd64 2.2.5-0.3+b2 [16.5 kB] Get: 67 http://deb.debian.org/debian forky/main amd64 libpotrace0 amd64 1.16-2+b2 [25.6 kB] Get: 68 http://deb.debian.org/debian forky/main amd64 libptexenc1 amd64 2025.20250727.75242+ds-4 [50.5 kB] Get: 69 http://deb.debian.org/debian forky/main amd64 libsm6 amd64 2:1.2.6-1 [37.3 kB] Get: 70 http://deb.debian.org/debian forky/main amd64 libsynctex2 amd64 2025.20250727.75242+ds-4 [58.2 kB] Get: 71 http://deb.debian.org/debian forky/main amd64 libteckit0 amd64 2.5.12+ds1-1+b1 [341 kB] Get: 72 http://deb.debian.org/debian forky/main amd64 libtexlua53-5 amd64 2025.20250727.75242+ds-4 [99.4 kB] Get: 73 http://deb.debian.org/debian forky/main amd64 libxt6t64 amd64 1:1.2.1-1.3 [208 kB] Get: 74 http://deb.debian.org/debian forky/main amd64 libxmu6 amd64 2:1.1.3-3+b4 [59.0 kB] Get: 75 http://deb.debian.org/debian forky/main amd64 libxpm4 amd64 1:3.5.17-1+b3 [56.2 kB] Get: 76 http://deb.debian.org/debian forky/main amd64 libxaw7 amd64 2:1.0.16-1 [212 kB] Get: 77 http://deb.debian.org/debian forky/main amd64 libxi6 amd64 2:1.8.2-1 [78.9 kB] Get: 78 http://deb.debian.org/debian forky/main amd64 libzzip-0-13t64 amd64 0.13.78+dfsg.1-0.2 [59.2 kB] Get: 79 http://deb.debian.org/debian forky/main amd64 tex-common all 6.19 [29.4 kB] Get: 80 http://deb.debian.org/debian forky/main amd64 xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get: 81 http://deb.debian.org/debian forky/main amd64 xfonts-utils amd64 1:7.7+7 [93.3 kB] Get: 82 http://deb.debian.org/debian forky/main amd64 lmodern all 2.005-1 [9480 kB] Get: 83 http://deb.debian.org/debian forky/main amd64 t1utils amd64 1.41-4 [62.1 kB] Get: 84 http://deb.debian.org/debian forky/main amd64 texlive-binaries amd64 2025.20250727.75242+ds-4 [7261 kB] Get: 85 http://deb.debian.org/debian forky/main amd64 xdg-utils all 1.2.1-2 [75.8 kB] Get: 86 http://deb.debian.org/debian forky/main amd64 texlive-base all 2025.20250927-3 [23.1 MB] Get: 87 http://deb.debian.org/debian forky/main amd64 texlive-fonts-recommended all 2025.20250927-3 [4992 kB] Get: 88 http://deb.debian.org/debian forky/main amd64 texlive-luatex all 2025.20250927-3 [36.0 MB] Get: 89 http://deb.debian.org/debian forky/main amd64 texlive-latex-base all 2025.20250927-3 [1320 kB] Get: 90 http://deb.debian.org/debian forky/main amd64 texlive-latex-recommended all 2025.20250927-3 [8509 kB] Fetched 128 MB in 5s (27.0 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19869 files and directories currently installed.) Preparing to unpack .../00-libexpat1_2.7.3-1_amd64.deb ... Unpacking libexpat1:amd64 (2.7.3-1) ... Selecting previously unselected package libproc2-0:amd64. Preparing to unpack .../01-libproc2-0_2%3a4.0.4-9_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.4-9) ... Selecting previously unselected package procps. 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Unpacking libuchardet0:amd64 (0.0.8-2) ... Selecting previously unselected package groff-base. Preparing to unpack .../09-groff-base_1.23.0-9_amd64.deb ... Unpacking groff-base (1.23.0-9) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../10-bsdextrautils_2.41.2-4_amd64.deb ... Unpacking bsdextrautils (2.41.2-4) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../11-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../12-man-db_2.13.1-1_amd64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package libtext-charwidth-perl:amd64. Preparing to unpack .../13-libtext-charwidth-perl_0.04-11+b4_amd64.deb ... Unpacking libtext-charwidth-perl:amd64 (0.04-11+b4) ... Selecting previously unselected package libtext-wrapi18n-perl. Preparing to unpack .../14-libtext-wrapi18n-perl_0.06-10_all.deb ... Unpacking libtext-wrapi18n-perl (0.06-10) ... Selecting previously unselected package ucf. Preparing to unpack .../15-ucf_3.0052_all.deb ... Moving old data out of the way Unpacking ucf (3.0052) ... Selecting previously unselected package m4. Preparing to unpack .../16-m4_1.4.20-2_amd64.deb ... Unpacking m4 (1.4.20-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../17-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../18-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../19-automake_1%3a1.18.1-2_all.deb ... Unpacking automake (1:1.18.1-2) ... Selecting previously unselected package autopoint. Preparing to unpack .../20-autopoint_0.23.1-2_all.deb ... Unpacking autopoint (0.23.1-2) ... Selecting previously unselected package libdebhelper-perl. 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Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../27-libelf1t64_0.193-3_amd64.deb ... Unpacking libelf1t64:amd64 (0.193-3) ... Selecting previously unselected package dwz. Preparing to unpack .../28-dwz_0.16-2_amd64.deb ... Unpacking dwz (0.16-2) ... Selecting previously unselected package libunistring5:amd64. Preparing to unpack .../29-libunistring5_1.3-2_amd64.deb ... Unpacking libunistring5:amd64 (1.3-2) ... Selecting previously unselected package libxml2-16:amd64. Preparing to unpack .../30-libxml2-16_2.14.6+dfsg-0.1_amd64.deb ... Unpacking libxml2-16:amd64 (2.14.6+dfsg-0.1) ... Selecting previously unselected package gettext. Preparing to unpack .../31-gettext_0.23.1-2+b1_amd64.deb ... Unpacking gettext (0.23.1-2+b1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../32-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. 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Preparing to unpack .../39-libbrotli1_1.1.0-2+b7_amd64.deb ... Unpacking libbrotli1:amd64 (1.1.0-2+b7) ... Selecting previously unselected package libpng16-16t64:amd64. Preparing to unpack .../40-libpng16-16t64_1.6.50-1_amd64.deb ... Unpacking libpng16-16t64:amd64 (1.6.50-1) ... Selecting previously unselected package libfreetype6:amd64. Preparing to unpack .../41-libfreetype6_2.13.3+dfsg-1_amd64.deb ... Unpacking libfreetype6:amd64 (2.13.3+dfsg-1) ... Selecting previously unselected package libfontconfig1:amd64. Preparing to unpack .../42-libfontconfig1_2.15.0-2.4_amd64.deb ... Unpacking libfontconfig1:amd64 (2.15.0-2.4) ... Selecting previously unselected package libpixman-1-0:amd64. Preparing to unpack .../43-libpixman-1-0_0.46.4-1_amd64.deb ... Unpacking libpixman-1-0:amd64 (0.46.4-1) ... Selecting previously unselected package libxau6:amd64. Preparing to unpack .../44-libxau6_1%3a1.0.11-1_amd64.deb ... Unpacking libxau6:amd64 (1:1.0.11-1) ... Selecting previously unselected package libxdmcp6:amd64. Preparing to unpack .../45-libxdmcp6_1%3a1.1.5-1_amd64.deb ... Unpacking libxdmcp6:amd64 (1:1.1.5-1) ... Selecting previously unselected package libxcb1:amd64. Preparing to unpack .../46-libxcb1_1.17.0-2+b1_amd64.deb ... Unpacking libxcb1:amd64 (1.17.0-2+b1) ... Selecting previously unselected package libx11-data. Preparing to unpack .../47-libx11-data_2%3a1.8.12-1_all.deb ... Unpacking libx11-data (2:1.8.12-1) ... Selecting previously unselected package libx11-6:amd64. Preparing to unpack .../48-libx11-6_2%3a1.8.12-1_amd64.deb ... Unpacking libx11-6:amd64 (2:1.8.12-1) ... Selecting previously unselected package libxcb-render0:amd64. Preparing to unpack .../49-libxcb-render0_1.17.0-2+b1_amd64.deb ... Unpacking libxcb-render0:amd64 (1.17.0-2+b1) ... Selecting previously unselected package libxcb-shm0:amd64. Preparing to unpack .../50-libxcb-shm0_1.17.0-2+b1_amd64.deb ... Unpacking libxcb-shm0:amd64 (1.17.0-2+b1) ... Selecting previously unselected package libxext6:amd64. Preparing to unpack .../51-libxext6_2%3a1.3.4-1+b3_amd64.deb ... Unpacking libxext6:amd64 (2:1.3.4-1+b3) ... Selecting previously unselected package libxrender1:amd64. Preparing to unpack .../52-libxrender1_1%3a0.9.12-1_amd64.deb ... Unpacking libxrender1:amd64 (1:0.9.12-1) ... Selecting previously unselected package libcairo2:amd64. Preparing to unpack .../53-libcairo2_1.18.4-1+b1_amd64.deb ... Unpacking libcairo2:amd64 (1.18.4-1+b1) ... Selecting previously unselected package libffi8:amd64. Preparing to unpack .../54-libffi8_3.5.2-2_amd64.deb ... Unpacking libffi8:amd64 (3.5.2-2) ... Selecting previously unselected package libfontenc1:amd64. Preparing to unpack .../55-libfontenc1_1%3a1.1.8-1+b2_amd64.deb ... Unpacking libfontenc1:amd64 (1:1.1.8-1+b2) ... Selecting previously unselected package libglib2.0-0t64:amd64. Preparing to unpack .../56-libglib2.0-0t64_2.86.1-1_amd64.deb ... Unpacking libglib2.0-0t64:amd64 (2.86.1-1) ... Selecting previously unselected package libgraphite2-3:amd64. Preparing to unpack .../57-libgraphite2-3_1.3.14-11_amd64.deb ... Unpacking libgraphite2-3:amd64 (1.3.14-11) ... Selecting previously unselected package libharfbuzz0b:amd64. Preparing to unpack .../58-libharfbuzz0b_12.1.0-1_amd64.deb ... Unpacking libharfbuzz0b:amd64 (12.1.0-1) ... Selecting previously unselected package x11-common. Preparing to unpack .../59-x11-common_1%3a7.7+26_all.deb ... Unpacking x11-common (1:7.7+26) ... Selecting previously unselected package libice6:amd64. Preparing to unpack .../60-libice6_2%3a1.1.1-1_amd64.deb ... Unpacking libice6:amd64 (2:1.1.1-1) ... Selecting previously unselected package libicu76:amd64. Preparing to unpack .../61-libicu76_76.1-4_amd64.deb ... Unpacking libicu76:amd64 (76.1-4) ... Selecting previously unselected package libkpathsea6:amd64. Preparing to unpack .../62-libkpathsea6_2025.20250727.75242+ds-4_amd64.deb ... Unpacking libkpathsea6:amd64 (2025.20250727.75242+ds-4) ... Selecting previously unselected package libmpfi0:amd64. Preparing to unpack .../63-libmpfi0_1.5.4+ds-4_amd64.deb ... Unpacking libmpfi0:amd64 (1.5.4+ds-4) ... Selecting previously unselected package libpaper2:amd64. Preparing to unpack .../64-libpaper2_2.2.5-0.3+b2_amd64.deb ... Unpacking libpaper2:amd64 (2.2.5-0.3+b2) ... Selecting previously unselected package libpaper-utils. Preparing to unpack .../65-libpaper-utils_2.2.5-0.3+b2_amd64.deb ... Unpacking libpaper-utils (2.2.5-0.3+b2) ... Selecting previously unselected package libpotrace0:amd64. Preparing to unpack .../66-libpotrace0_1.16-2+b2_amd64.deb ... Unpacking libpotrace0:amd64 (1.16-2+b2) ... Selecting previously unselected package libptexenc1:amd64. Preparing to unpack .../67-libptexenc1_2025.20250727.75242+ds-4_amd64.deb ... Unpacking libptexenc1:amd64 (2025.20250727.75242+ds-4) ... Selecting previously unselected package libsm6:amd64. Preparing to unpack .../68-libsm6_2%3a1.2.6-1_amd64.deb ... Unpacking libsm6:amd64 (2:1.2.6-1) ... Selecting previously unselected package libsynctex2:amd64. Preparing to unpack .../69-libsynctex2_2025.20250727.75242+ds-4_amd64.deb ... Unpacking libsynctex2:amd64 (2025.20250727.75242+ds-4) ... Selecting previously unselected package libteckit0:amd64. Preparing to unpack .../70-libteckit0_2.5.12+ds1-1+b1_amd64.deb ... Unpacking libteckit0:amd64 (2.5.12+ds1-1+b1) ... Selecting previously unselected package libtexlua53-5:amd64. Preparing to unpack .../71-libtexlua53-5_2025.20250727.75242+ds-4_amd64.deb ... Unpacking libtexlua53-5:amd64 (2025.20250727.75242+ds-4) ... Selecting previously unselected package libxt6t64:amd64. Preparing to unpack .../72-libxt6t64_1%3a1.2.1-1.3_amd64.deb ... Unpacking libxt6t64:amd64 (1:1.2.1-1.3) ... Selecting previously unselected package libxmu6:amd64. Preparing to unpack .../73-libxmu6_2%3a1.1.3-3+b4_amd64.deb ... Unpacking libxmu6:amd64 (2:1.1.3-3+b4) ... Selecting previously unselected package libxpm4:amd64. 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Setting up libxdmcp6:amd64 (1:1.1.5-1) ... Setting up libxcb1:amd64 (1.17.0-2+b1) ... Setting up bsdextrautils (2.41.2-4) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libxcb-render0:amd64 (1.17.0-2+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libxml2-16:amd64 (2.14.6+dfsg-0.1) ... Setting up libdebhelper-perl (13.28) ... Setting up libbrotli1:amd64 (1.1.0-2+b7) ... Setting up libmagic1t64:amd64 (1:5.46-5) ... Setting up x11-common (1:7.7+26) ... invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up gettext-base (0.23.1-2+b1) ... Setting up m4 (1.4.20-2) ... Setting up libxcb-shm0:amd64 (1.17.0-2+b1) ... Setting up file (1:5.46-5) ... Setting up libtext-wrapi18n-perl (0.06-10) ... Setting up libelf1t64:amd64 (0.193-3) ... Setting up libfontenc1:amd64 (1:1.1.8-1+b2) ... Setting up autotools-dev (20240727.1) ... Setting up libzzip-0-13t64:amd64 (0.13.78+dfsg.1-0.2) ... Setting up libx11-data (2:1.8.12-1) ... Setting up libteckit0:amd64 (2.5.12+ds1-1+b1) ... Setting up xfonts-encodings (1:1.0.4-2.2) ... Setting up t1utils (1.41-4) ... Setting up libtexlua53-5:amd64 (2025.20250727.75242+ds-4) ... Setting up libproc2-0:amd64 (2:4.0.4-9) ... Setting up libunistring5:amd64 (1.3-2) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libpng16-16t64:amd64 (1.6.50-1) ... Setting up autopoint (0.23.1-2) ... Setting up libmpfi0:amd64 (1.5.4+ds-4) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up libkpathsea6:amd64 (2025.20250727.75242+ds-4) ... Setting up autoconf (2.72-3.1) ... Setting up libffi8:amd64 (3.5.2-2) ... Setting up dwz (0.16-2) ... Setting up sensible-utils (0.0.26) ... Setting up libuchardet0:amd64 (0.0.8-2) ... Setting up procps (2:4.0.4-9) ... Setting up fonts-lmodern (2.005-1) ... Setting up libx11-6:amd64 (2:1.8.12-1) ... Setting up libicu76:amd64 (76.1-4) ... Setting up libpaper2:amd64 (2.2.5-0.3+b2) ... Setting up xdg-utils (1.2.1-2) ... update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode Setting up libsynctex2:amd64 (2025.20250727.75242+ds-4) ... Setting up libpotrace0:amd64 (1.16-2+b2) ... Setting up automake (1:1.18.1-2) ... update-alternatives: using /usr/bin/automake-1.18 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up libice6:amd64 (2:1.1.1-1) ... Setting up gettext (0.23.1-2+b1) ... Setting up libxpm4:amd64 (1:3.5.17-1+b3) ... Setting up libxrender1:amd64 (1:0.9.12-1) ... Setting up libtool (2.5.4-7) ... Setting up fontconfig-config (2.15.0-2.4) ... Setting up libxext6:amd64 (2:1.3.4-1+b3) ... Setting up libpaper-utils (2.2.5-0.3+b2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (21) ... Setting up libglib2.0-0t64:amd64 (2.86.1-1) ... No schema files found: doing nothing. Setting up libptexenc1:amd64 (2025.20250727.75242+ds-4) ... Setting up libfreetype6:amd64 (2.13.3+dfsg-1) ... Setting up ucf (3.0052) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up groff-base (1.23.0-9) ... Setting up libharfbuzz0b:amd64 (12.1.0-1) ... Setting up libfontconfig1:amd64 (2.15.0-2.4) ... Setting up libsm6:amd64 (2:1.2.6-1) ... Setting up libxi6:amd64 (2:1.8.2-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up xfonts-utils (1:7.7+7) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libcairo2:amd64 (1.18.4-1+b1) ... Setting up tex-common (6.19) ... update-language: texlive-base not installed and configured, doing nothing! Setting up libxt6t64:amd64 (1:1.2.1-1.3) ... Setting up lmodern (2.005-1) ... Setting up libxmu6:amd64 (2:1.1.3-3+b4) ... Setting up debhelper (13.28) ... Setting up libxaw7:amd64 (2:1.0.16-1) ... Setting up texlive-binaries (2025.20250727.75242+ds-4) ... update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode Setting up texlive-base (2025.20250927-3) ... tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex Setting up texlive-luatex (2025.20250927-3) ... Setting up texlive-latex-base (2025.20250927-3) ... Setting up texlive-latex-recommended (2025.20250927-3) ... Setting up texlive-fonts-recommended (2025.20250927-3) ... Processing triggers for libc-bin (2.41-12) ... Processing triggers for tex-common (6.19) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Building format(s) --all. This may take some time... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/mummer-3.23+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../mummer_3.23+dfsg-8_source.changes dpkg-buildpackage: info: source package mummer dpkg-buildpackage: info: source version 3.23+dfsg-8 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_auto_clean make -j40 clean make[1]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg' rm -f *~ core* cd /build/reproducible-path/mummer-3.23+dfsg/src/kurtz; make clean make[2]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg/src/kurtz' rm -f *~ cd libbasedir; make clean make[3]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir' rm -f *.splint rm -f *.[oa] *.dbg.o *.inc *.aux *.dvi *.log *~ make[3]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir' cd streesrc; make clean make[3]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc' rm -f *.splint rm -f *.[aox] *~ make[3]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc' cd mm3src; make clean make[3]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/mm3src' rm -f *.splint rm -f *.[ox] shit[123] *~ cd /build/reproducible-path/mummer-3.23+dfsg; rm -f maxmat3.x maxmat3.dbg.x mummer make[3]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/mm3src' make[2]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg/src/kurtz' cd /build/reproducible-path/mummer-3.23+dfsg/src/tigr; make clean make[2]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg/src/tigr' rm -f *.o *~ cd /build/reproducible-path/mummer-3.23+dfsg; rm -f annotate combineMUMs delta-filter gaps mgaps postnuc postpro prenuc prepro repeat-match show-aligns show-coords show-tiling show-snps show-diff delta2blocks delta2maf cd /build/reproducible-path/mummer-3.23+dfsg/aux_bin; rm -f annotate combineMUMs delta-filter gaps mgaps postnuc postpro prenuc prepro repeat-match show-aligns show-coords show-tiling show-snps show-diff delta2blocks delta2maf make[2]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg/src/tigr' cd /build/reproducible-path/mummer-3.23+dfsg/scripts; make clean make[2]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg/scripts' rm -f *~ cd /build/reproducible-path/mummer-3.23+dfsg; rm -f exact-tandems mapview mummerplot nucmer promer run-mummer1 run-mummer3 nucmer2xfig dnadiff make[2]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg/scripts' cd /build/reproducible-path/mummer-3.23+dfsg/docs; make clean make[2]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg/docs' rm -f *.dvi *.aux *.log *.out *~ maxmat3man.pdf make[2]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg/docs' make[1]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg' [ -d /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin ] || mkdir -p /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin [ -d /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/lib/mummer ] || mkdir -p /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/lib/mummer dh_auto_build -- BIN_DIR=/build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin AUX_BIN_DIR=/build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/lib/mummer \ FINAL_BIN_DIR=/usr/bin FINAL_AUX_BIN_DIR=/usr/lib/mummer \ FINAL_SCRIPT_DIR=/usr/share/perl5/ \ CFLAGS="-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc" CXXFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection" LDFLAGS="-Wl,-z,relro -Wl,-z,now" make -j40 INSTALL="install --strip-program=true" BIN_DIR=/build/reproducible-path/mummer-3.23\+dfsg/debian/tmp/usr/bin AUX_BIN_DIR=/build/reproducible-path/mummer-3.23\+dfsg/debian/tmp/usr/lib/mummer FINAL_BIN_DIR=/usr/bin FINAL_AUX_BIN_DIR=/usr/lib/mummer FINAL_SCRIPT_DIR=/usr/share/perl5/ CFLAGS="-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc" CXXFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection" LDFLAGS="-Wl,-z,relro -Wl,-z,now" make[2]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg' cd /build/reproducible-path/mummer-3.23+dfsg/src/kurtz; make mummer cd /build/reproducible-path/mummer-3.23+dfsg/src/tigr; make CFLAGS="-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc" CXXFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection" LDFLAGS="-Wl,-z,relro -Wl,-z,now" all cd /build/reproducible-path/mummer-3.23+dfsg/scripts; make all make[3]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg/src/kurtz' cd libbasedir; make libbase.a make[3]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg/scripts' make[3]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg/src/tigr' /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 tigrinc.cc -c -o tigrinc.o /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 delta.cc -c -o delta.o /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 sw_align.cc -c -o sw_align.o /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 translate.cc -c -o translate.o make[4]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir' /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cleanMUMcand.o cleanMUMcand.c /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o clock.o clock.c cp -a ../debian/sh-replacement-scripts/exact-tandems /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mapfile.o mapfile.c /usr/bin/sed -e 's?__PERL_PATH?/usr/bin/perl?g' \ -e 's?__SCRIPT_DIR?/usr/share/perl5/?g' \ mapview.pl > /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/mapview /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o multiseq.o multiseq.c /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o procopt.o procopt.c /usr/bin/sed -e 's?__PERL_PATH?/usr/bin/perl?g' \ -e 's?__SCRIPT_DIR?/usr/share/perl5/?g' \ -e 's?__BIN_DIR?/usr/bin?g' \ mummerplot.pl > /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/mummerplot /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o safescpy.o safescpy.c /usr/bin/sed -e 's?__PERL_PATH?/usr/bin/perl?g' \ -e 's?__SCRIPT_DIR?/usr/share/perl5/?g' \ -e 's?__AUX_BIN_DIR?/usr/lib/mummer?g' \ -e 's?__BIN_DIR?/usr/bin?g' \ nucmer.pl > /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/nucmer /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o seterror.o seterror.c chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/exact-tandems /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o space.o space.c /usr/bin/sed -e 's?__PERL_PATH?/usr/bin/perl?g' \ -e 's?__SCRIPT_DIR?/usr/share/perl5/?g' \ -e 's?__AUX_BIN_DIR?/usr/lib/mummer?g' \ -e 's?__BIN_DIR?/usr/bin?g' \ promer.pl > /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/promer chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/mapview chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/mummerplot cp -a ../debian/sh-replacement-scripts/run-mummer1 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin cp -a ../debian/sh-replacement-scripts/run-mummer3 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/nucmer /usr/bin/sed -e 's?__PERL_PATH?/usr/bin/perl?g' \ nucmer2xfig.pl > /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/nucmer2xfig /usr/bin/sed -e 's?__PERL_PATH?/usr/bin/perl?g' \ -e 's?__SCRIPT_DIR?/usr/share/perl5/?g' \ -e 's?__BIN_DIR?/usr/bin?g' \ dnadiff.pl > /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/dnadiff chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/run-mummer1 chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/promer chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/run-mummer3 chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/nucmer2xfig chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/dnadiff make[3]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg/scripts' ar sruv libbase.a cleanMUMcand.o clock.o mapfile.o multiseq.o procopt.o safescpy.o seterror.o space.o ar: `u' modifier ignored since `D' is the default (see `U') ar: creating libbase.a a - cleanMUMcand.o a - clock.o a - mapfile.o a - multiseq.o a - procopt.o a - safescpy.o a - seterror.o a - space.o make[4]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir' cd streesrc; make libstree.a make[4]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc' /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o construct.o construct.c /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o access.o access.c /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o scanpref.o scanpref.c /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o linkloc.o linkloc.c /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o depthtab.o depthtab.c /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ex2leav.o ex2leav.c /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o dfs.o dfs.c /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o overmax.o overmax.c /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o oversucc.o oversucc.c /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o addleafcount.o addleafcount.c /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o iterator.o iterator.c tigrinc.cc: In function 'int Read_String(FILE*, char*&, long int&, char*, int)': tigrinc.cc:335:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 335 | fgets (Line, MAX_LINE, fp); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ tigrinc.cc: In function 'int Read_File(FILE*, long int&, std::map, char*>&, int)': tigrinc.cc:452:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 452 | fgets (Line, MAX_LINE, fp); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ar sruv libstree.a construct.o access.o scanpref.o linkloc.o depthtab.o ex2leav.o dfs.o overmax.o oversucc.o addleafcount.o iterator.o ar: `u' modifier ignored since `D' is the default (see `U') ar: creating libstree.a a - construct.o a - access.o a - scanpref.o a - linkloc.o a - depthtab.o a - ex2leav.o a - dfs.o a - overmax.o a - oversucc.o a - addleafcount.o a - iterator.o make[4]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc' cd mm3src; make mummer make[4]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/mm3src' /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -I../streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o maxmat3.o maxmat3.c /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -I../streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o maxmatopt.o maxmatopt.c /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -I../streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o maxmatinp.o maxmatinp.c /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -I../streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o findmumcand.o findmumcand.c /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -I../streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o findmaxmat.o findmaxmat.c /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -I../streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o procmaxmat.o procmaxmat.c /usr/bin/gcc -Wl,-z,relro -Wl,-z,now maxmat3.o maxmatopt.o maxmatinp.o findmumcand.o findmaxmat.o procmaxmat.o ../streesrc/libstree.a ../libbasedir/libbase.a \ -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/mummer; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/mummer make[4]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/mm3src' make[3]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg/src/kurtz' /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now annotate.cc tigrinc.o -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/annotate; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/annotate /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now combineMUMs.cc tigrinc.o -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/combineMUMs; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/combineMUMs /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now gaps.cc tigrinc.o -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/gaps; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/gaps /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now mgaps.cc tigrinc.o -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/mgaps; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/mgaps /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now postnuc.cc tigrinc.o sw_align.o -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/lib/mummer/postnuc; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/lib/mummer/postnuc /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now postpro.cc tigrinc.o sw_align.o translate.o -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/lib/mummer/postpro; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/lib/mummer/postpro /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now prenuc.cc tigrinc.o -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/lib/mummer/prenuc; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/lib/mummer/prenuc /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now prepro.cc tigrinc.o translate.o -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/lib/mummer/prepro; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/lib/mummer/prepro /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now repeat-match.cc tigrinc.o -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/repeat-match; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/repeat-match combineMUMs.cc:26:38: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 26 | #define DEFAULT_ERROR_FILE_NAME "witherrors.gaps" | ^~~~~~~~~~~~~~~~~ combineMUMs.cc:109:27: note: in expansion of macro 'DEFAULT_ERROR_FILE_NAME' 109 | char * Error_File_Name = DEFAULT_ERROR_FILE_NAME; | ^~~~~~~~~~~~~~~~~~~~~~~ combineMUMs.cc:135:24: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 135 | char * Query_Suffix = "Query"; | ^~~~~~~ combineMUMs.cc:145:22: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 145 | char * Ref_Suffix = "Ref"; | ^~~~~ mgaps.cc: In function 'int Process_Cluster(Match_t*, int, char*)': mgaps.cc:533:20: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 533 | label = "#\n"; | ^~~~~ mgaps.cc: In function 'void Process_Matches(Match_t*, int, char*)': mgaps.cc:620:19: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 620 | label = "#\n"; | ^~~~~ combineMUMs.cc: In function 'int Read_String(FILE*, char**, long int*, char*)': combineMUMs.cc:1481:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 1481 | fgets (Line, MAX_LINE, fp); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now delta-filter.cc tigrinc.o delta.o -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/delta-filter; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/delta-filter /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now show-aligns.cc tigrinc.o translate.o delta.o -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/show-aligns; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/show-aligns /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now show-coords.cc tigrinc.o delta.o -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/show-coords; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/show-coords /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now show-tiling.cc tigrinc.o delta.o -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/show-tiling; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/show-tiling /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now show-snps.cc tigrinc.o translate.o delta.o -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/show-snps; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/show-snps /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now show-diff.cc tigrinc.o delta.o -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/show-diff; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/show-diff /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now delta2blocks.cc tigrinc.o translate.o delta.o -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/delta2blocks; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/delta2blocks /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now delta2maf.cc tigrinc.o translate.o delta.o -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/delta2maf; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/delta2maf delta2blocks.cc: In function 'void printAlignments(std::vector, char*, char*, char*, char*)': delta2blocks.cc:408:23: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long int' [-Wformat=] 408 | printf ("%s %s %d %d %d %d ",IdR,IdQ, Ap->sR,Ap->eR,Ap->sQ,Ap->eQ); | ~^ ~~~~~~ | | | | int long int | %ld delta2blocks.cc:408:26: warning: format '%d' expects argument of type 'int', but argument 5 has type 'long int' [-Wformat=] 408 | printf ("%s %s %d %d %d %d ",IdR,IdQ, Ap->sR,Ap->eR,Ap->sQ,Ap->eQ); | ~^ ~~~~~~ | | | | int long int | %ld delta2blocks.cc:408:29: warning: format '%d' expects argument of type 'int', but argument 6 has type 'long int' [-Wformat=] 408 | printf ("%s %s %d %d %d %d ",IdR,IdQ, Ap->sR,Ap->eR,Ap->sQ,Ap->eQ); | ~^ ~~~~~~ | | | | int long int | %ld delta2blocks.cc:408:32: warning: format '%d' expects argument of type 'int', but argument 7 has type 'long int' [-Wformat=] 408 | printf ("%s %s %d %d %d %d ",IdR,IdQ, Ap->sR,Ap->eR,Ap->sQ,Ap->eQ); | ~^ ~~~~~~ | | | | int long int | %ld delta2maf.cc: In function 'void printAlignments(std::vector, char*, char*, std::map, char*>&)': delta2maf.cc:547:24: warning: format '%d' expects argument of type 'int', but argument 2 has type 'long int' [-Wformat=] 547 | printf("a score=%d\n",abs(Ap->eR - Ap->sR)); | ~^ ~~~~~~~~~~~~~~~~~~~~ | | | | int long int | %ld delta2maf.cc:587:27: warning: format '%d' expects argument of type 'int', but argument 3 has type 'long int' [-Wformat=] 587 | printf("s %s %d %d %s %d ", IdQ, sQ-1, eQ-sQ+1, "-",SeqLenQ); | ~^ ~~~~ | | | | int long int | %ld delta2maf.cc:587:30: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long int' [-Wformat=] 587 | printf("s %s %d %d %s %d ", IdQ, sQ-1, eQ-sQ+1, "-",SeqLenQ); | ~^ ~~~~~~~ | | | | int long int | %ld delta2maf.cc:587:36: warning: format '%d' expects argument of type 'int', but argument 6 has type 'long int' [-Wformat=] 587 | printf("s %s %d %d %s %d ", IdQ, sQ-1, eQ-sQ+1, "-",SeqLenQ); | ~^ ~~~~~~~ | | | | int long int | %ld delta2maf.cc:590:27: warning: format '%d' expects argument of type 'int', but argument 3 has type 'long int' [-Wformat=] 590 | printf("s %s %d %d %s %d ", IdQ, sQ-1, eQ-sQ+1, "+",SeqLenQ); | ~^ ~~~~ | | | | int long int | %ld delta2maf.cc:590:30: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long int' [-Wformat=] 590 | printf("s %s %d %d %s %d ", IdQ, sQ-1, eQ-sQ+1, "+",SeqLenQ); | ~^ ~~~~~~~ | | | | int long int | %ld delta2maf.cc:590:36: warning: format '%d' expects argument of type 'int', but argument 6 has type 'long int' [-Wformat=] 590 | printf("s %s %d %d %s %d ", IdQ, sQ-1, eQ-sQ+1, "+",SeqLenQ); | ~^ ~~~~~~~ | | | | int long int | %ld delta2maf.cc:597:27: warning: format '%d' expects argument of type 'int', but argument 3 has type 'long int' [-Wformat=] 597 | printf("s %s %d %d %s %d ", IdR, sR-1, eR-sR+1, "-",SeqLenR); | ~^ ~~~~ | | | | int long int | %ld delta2maf.cc:597:30: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long int' [-Wformat=] 597 | printf("s %s %d %d %s %d ", IdR, sR-1, eR-sR+1, "-",SeqLenR); | ~^ ~~~~~~~ | | | | int long int | %ld delta2maf.cc:597:36: warning: format '%d' expects argument of type 'int', but argument 6 has type 'long int' [-Wformat=] 597 | printf("s %s %d %d %s %d ", IdR, sR-1, eR-sR+1, "-",SeqLenR); | ~^ ~~~~~~~ | | | | int long int | %ld delta2maf.cc:600:27: warning: format '%d' expects argument of type 'int', but argument 3 has type 'long int' [-Wformat=] 600 | printf("s %s %d %d %s %d ", IdR, sR-1, eR-sR+1, "+",SeqLenR); | ~^ ~~~~ | | | | int long int | %ld delta2maf.cc:600:30: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long int' [-Wformat=] 600 | printf("s %s %d %d %s %d ", IdR, sR-1, eR-sR+1, "+",SeqLenR); | ~^ ~~~~~~~ | | | | int long int | %ld delta2maf.cc:600:36: warning: format '%d' expects argument of type 'int', but argument 6 has type 'long int' [-Wformat=] 600 | printf("s %s %d %d %s %d ", IdR, sR-1, eR-sR+1, "+",SeqLenR); | ~^ ~~~~~~~ | | | | int long int | %ld delta2maf.cc:633:34: warning: format '%s' expects argument of type 'char*', but argument 2 has type 'char (*)[(Screen_Width + 1)]' [-Wformat=] 633 | printf("%s", &Buff2); | ~^ ~~~~~~ | | | | | char (*)[(Screen_Width + 1)] | char* delta2maf.cc:637:34: warning: format '%s' expects argument of type 'char*', but argument 2 has type 'char (*)[(Screen_Width + 1)]' [-Wformat=] 637 | printf("%s", &Buff1); | ~^ ~~~~~~ | | | | | char (*)[(Screen_Width + 1)] | char* delta2maf.cc:659:28: warning: format '%s' expects argument of type 'char*', but argument 2 has type 'char (*)[(Screen_Width + 1)]' [-Wformat=] 659 | printf("%s", &Buff2); | ~^ ~~~~~~ | | | | | char (*)[(Screen_Width + 1)] | char* delta2maf.cc:663:28: warning: format '%s' expects argument of type 'char*', but argument 2 has type 'char (*)[(Screen_Width + 1)]' [-Wformat=] 663 | printf("%s", &Buff1); | ~^ ~~~~~~ | | | | | char (*)[(Screen_Width + 1)] | char* show-coords.cc: In function 'void printBtab(std::vector)': show-coords.cc:799:12: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 799 | type = "NUCMER"; | ^~~~~~~~ show-coords.cc:801:12: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 801 | type = "PROMER"; | ^~~~~~~~ show-coords.cc:803:12: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 803 | type = "NULL"; | ^~~~~~ delta2maf.cc:710:30: warning: format '%s' expects argument of type 'char*', but argument 2 has type 'char (*)[(Screen_Width + 1)]' [-Wformat=] 710 | printf("%s", &Buff2); | ~^ ~~~~~~ | | | | | char (*)[(Screen_Width + 1)] | char* delta2maf.cc:714:30: warning: format '%s' expects argument of type 'char*', but argument 2 has type 'char (*)[(Screen_Width + 1)]' [-Wformat=] 714 | printf("%s", &Buff1); | ~^ ~~~~~~ | | | | | char (*)[(Screen_Width + 1)] | char* delta2maf.cc:732:24: warning: format '%s' expects argument of type 'char*', but argument 2 has type 'char (*)[(Screen_Width + 1)]' [-Wformat=] 732 | printf("%s", &Buff2); | ~^ ~~~~~~ | | | | | char (*)[(Screen_Width + 1)] | char* delta2maf.cc:736:24: warning: format '%s' expects argument of type 'char*', but argument 2 has type 'char (*)[(Screen_Width + 1)]' [-Wformat=] 736 | printf("%s", &Buff1); | ~^ ~~~~~~ | | | | | char (*)[(Screen_Width + 1)] | char* make[3]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg/src/tigr' make[2]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg' /usr/bin/make -C docs make[2]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg/docs' pdflatex maxmat3man This is pdfTeX, Version 3.141592653-2.6-1.40.28 (TeX Live 2025/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./maxmat3man.tex LaTeX2e <2025-06-01> patch level 1 L3 programming layer <2025-09-02> (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls Document Class: article 2025/01/22 v1.4n Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo)) (/usr/share/texlive/texmf-dist/tex/latex/ntgclass/a4.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) (./skaff.sty) (./optionman.sty) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd) (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) No file maxmat3man.aux. (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) LaTeX Warning: Reference `SecBasicNotions' on page 1 undefined on input line 36 . Overfull \hbox (4.79204pt too wide) in paragraph at lines 60--61 \OT1/ptm/m/n/12 Compute \OT1/ptm/m/it/12 MUM\OT1/ptm/m/n/12 -candidates, i.e. m atches that are unique in the reference-sequence [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}{/usr/share/texlive/texmf- dist/fonts/enc/dvips/base/8r.enc}] LaTeX Warning: Reference `SecBasicNotions' on page 2 undefined on input line 10 4. [2] [3] Overfull \hbox (8.54073pt too wide) in paragraph at lines 225--225 []\OT1/pcr/m/n/10.95 # ........................................................ ......[] [4] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALL2_BOVIN|ALLERGEN 139 1 155 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALG3_YEAST|PUTATIVE 425 2 904 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALF_TRYBB|FRUCTOSE-BISPHOSPHATE 177 4 794 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALGB_YEAST|ALG11 114 12 599 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALR_SYNY3|ALANINE 354 33 261 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALGB_PSEAE|ALGINATE 212 40 991 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALGB_PSEAE|ALGINATE 314 41 093 7[] [5] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALGB_PSEAE|ALGINATE 360 41 138 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALR_SYNY3|ALANINE 79 44 186 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALP_CEPAC|ALKALINE 366 45 304 7[] [6] [7] (./maxmat3man.aux) LaTeX Warning: There were undefined references. LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. ) (see the transcript file for additional information)< /usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmb8a.pfb> Output written on maxmat3man.pdf (7 pages, 132594 bytes). Transcript written on maxmat3man.log. pdflatex maxmat3man This is pdfTeX, Version 3.141592653-2.6-1.40.28 (TeX Live 2025/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./maxmat3man.tex LaTeX2e <2025-06-01> patch level 1 L3 programming layer <2025-09-02> (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls Document Class: article 2025/01/22 v1.4n Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo)) (/usr/share/texlive/texmf-dist/tex/latex/ntgclass/a4.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) (./skaff.sty) (./optionman.sty) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd) (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) (./maxmat3man.aux) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) Overfull \hbox (4.79204pt too wide) in paragraph at lines 60--61 \OT1/ptm/m/n/12 Compute \OT1/ptm/m/it/12 MUM\OT1/ptm/m/n/12 -candidates, i.e. m atches that are unique in the reference-sequence [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}{/usr/share/texlive/texmf- dist/fonts/enc/dvips/base/8r.enc}] [2] [3] Overfull \hbox (8.54073pt too wide) in paragraph at lines 225--225 []\OT1/pcr/m/n/10.95 # ........................................................ ......[] [4] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALL2_BOVIN|ALLERGEN 139 1 155 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALG3_YEAST|PUTATIVE 425 2 904 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALF_TRYBB|FRUCTOSE-BISPHOSPHATE 177 4 794 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALGB_YEAST|ALG11 114 12 599 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALR_SYNY3|ALANINE 354 33 261 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALGB_PSEAE|ALGINATE 212 40 991 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALGB_PSEAE|ALGINATE 314 41 093 7[] [5] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALGB_PSEAE|ALGINATE 360 41 138 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALR_SYNY3|ALANINE 79 44 186 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALP_CEPAC|ALKALINE 366 45 304 7[] [6] [7] (./maxmat3man.aux) ) (see the transcript file for additional information)< /usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmb8a.pfb> Output written on maxmat3man.pdf (7 pages, 131942 bytes). Transcript written on maxmat3man.log. make[2]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg/docs' make[1]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg' dh_auto_test make -j40 check make[1]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg' check complete make[1]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg' create-stamp debian/debhelper-build-stamp debian/rules override_dh_prep make[1]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg' dh_prep -X debian/tmp make[1]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg' debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg' mv /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/annotate /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/mummer-annotate make[1]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg' dh_install dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism debian/rules override_dh_compress make[1]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg' dh_compress -Xpdf make[1]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg' dh_fixperms dh_missing dh_dwz -a dwz: debian/mummer/usr/bin/mummer: DWARF compression not beneficial - old size 63722 new size 63975 dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'mummer-dbgsym' in '../mummer-dbgsym_3.23+dfsg-8_amd64.deb'. dpkg-deb: building package 'mummer' in '../mummer_3.23+dfsg-8_amd64.deb'. dpkg-deb: building package 'mummer-doc' in '../mummer-doc_3.23+dfsg-8_all.deb'. dpkg-genbuildinfo --build=binary -O../mummer_3.23+dfsg-8_amd64.buildinfo dpkg-genchanges --build=binary -O../mummer_3.23+dfsg-8_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1863848 and its subdirectories I: Current time: Thu Oct 30 15:54:02 -12 2025 I: pbuilder-time-stamp: 1761882842 Fri Oct 31 03:54:02 UTC 2025 I: 1st build successful. Starting 2nd build on remote node ionos15-amd64.debian.net. Fri Oct 31 03:54:02 UTC 2025 I: Preparing to do remote build '2' on ionos15-amd64.debian.net. Fri Oct 31 03:54:02 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos15-amd64.debian.net is marked as down. Fri Oct 31 03:54:02 UTC 2025 - checking via ssh if ionos15-amd64.debian.net is up. removed '/tmp/read-only-fs-test-hoBk5x' ==================================================================================== Fri Oct 31 03:54:03 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos15-amd64, called using "2 mummer forky /srv/reproducible-results/rbuild-debian/r-b-build.Dw5QbLMR 3.23+dfsg-8" as arguments. Fri Oct 31 03:54:03 UTC 2025 - actually running "reproducible_build.sh" (md5sum cc591790ab2c8e13f5e554202b95c89c) as "/tmp/jenkins-script-vM96dEWY" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Fri Oct 31 03:54:03 UTC 2025 I: Downloading source for forky/mummer=3.23+dfsg-8 Reading package lists... NOTICE: 'mummer' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/mummer.git Please use: git clone https://salsa.debian.org/med-team/mummer.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 1531 kB of source archives. Get:1 http://deb.debian.org/debian forky/main mummer 3.23+dfsg-8 (dsc) [2173 B] Get:2 http://deb.debian.org/debian forky/main mummer 3.23+dfsg-8 (tar) [1113 kB] Get:3 http://deb.debian.org/debian forky/main mummer 3.23+dfsg-8 (diff) [416 kB] Fetched 1531 kB in 0s (34.3 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'mummer' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/mummer.git Please use: git clone https://salsa.debian.org/med-team/mummer.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 1531 kB of source archives. Get:1 http://deb.debian.org/debian forky/main mummer 3.23+dfsg-8 (dsc) [2173 B] Get:2 http://deb.debian.org/debian forky/main mummer 3.23+dfsg-8 (tar) [1113 kB] Get:3 http://deb.debian.org/debian forky/main mummer 3.23+dfsg-8 (diff) [416 kB] Fetched 1531 kB in 0s (34.3 MB/s) Download complete and in download only mode ============================================================================= Re-Building mummer in forky on amd64 on ionos15-amd64 now. Date: Fri Oct 31 03:54:05 UTC 2025 Date UTC: Fri Oct 31 03:54:05 UTC 2025 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.Dw5QbLMR + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.Dw5QbLMR/pbuilderrc_xEUn + case ${ARCH} in + case $ARCH in + locale=et_EE + language=et + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' mummer = debian-installer -o mummer = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' mummer = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Dw5QbLMR/pbuilderrc_xEUn --distribution forky --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Dw5QbLMR/b2 --logfile b2/build.log mummer_3.23+dfsg-8.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Fri Oct 31 17:54:05 +14 2025 I: pbuilder-time-stamp: 1761882845 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] tar: ./build: time stamp 2026-11-29 07:50:53 is 34005406.84155432 s in the future tar: ./dev/ptmx: time stamp 2026-11-29 07:46:28 is 34005141.841292649 s in the future tar: ./dev/zero: time stamp 2026-11-29 07:46:28 is 34005141.84116542 s in the future tar: ./dev/null: time stamp 2026-11-29 07:46:28 is 34005141.841121644 s in the future tar: ./dev/console: time stamp 2026-11-29 07:46:28 is 34005141.841053721 s in the future tar: ./dev/random: time stamp 2026-11-29 07:46:28 is 34005141.841013203 s in the future tar: ./dev/full: time stamp 2026-11-29 07:46:28 is 34005141.840975063 s in the future tar: ./dev/pts: time stamp 2026-11-29 07:46:28 is 34005141.840905138 s in the future tar: ./dev/tty: time stamp 2026-11-29 07:46:28 is 34005141.840834978 s in the future tar: ./dev/urandom: time stamp 2026-11-29 07:46:28 is 34005141.84079461 s in the future tar: ./etc/terminfo: time stamp 2026-11-29 07:46:38 is 34005151.840448907 s in the future tar: ./etc/opt: time stamp 2026-11-29 07:46:28 is 34005141.838365961 s in the future tar: ./etc/security/opasswd: time stamp 2026-11-29 07:46:40 is 34005153.83798445 s in the future tar: ./etc/security: time stamp 2026-11-29 07:46:40 is 34005153.837648685 s in the future tar: ./etc/shadow: time stamp 2026-11-29 07:51:36 is 34005449.837448449 s in the future tar: ./etc/cron.daily: time stamp 2026-11-30 23:31:29 is 34148242.837205153 s in the future tar: ./etc/apt/apt.conf.d/80proxy: time stamp 2026-11-29 07:52:40 is 34005513.835806173 s in the future tar: ./etc/apt/apt.conf.d/15pbuilder: time stamp 2026-11-29 07:50:53 is 34005406.835735093 s in the future tar: ./etc/apt/apt.conf.d: time stamp 2026-11-30 23:31:29 is 34148242.835617071 s in the future tar: ./etc/apt/sources.list: time stamp 2026-11-29 07:52:40 is 34005513.835499158 s in the future tar: ./etc/apt/trusted.gpg.d: time stamp 2026-11-29 07:50:07 is 34005360.83425385 s in the future tar: ./etc/apt: time stamp 2026-11-29 07:52:40 is 34005513.834163775 s in the future tar: ./etc/fstab: time stamp 2026-11-29 07:46:28 is 34005141.834108453 s in the future tar: ./etc/update-motd.d: time stamp 2026-11-29 07:46:39 is 34005152.833180097 s in the future tar: ./etc/ld.so.conf.d: time stamp 2026-11-29 07:52:00 is 34005473.832841763 s in the future tar: ./etc/gshadow: time stamp 2026-11-29 07:51:36 is 34005449.832677827 s in the future tar: ./etc/shells: time stamp 2026-11-29 07:46:39 is 34005152.832598196 s in the future tar: ./etc/default: time stamp 2026-11-29 07:51:35 is 34005448.832227858 s in the future tar: ./etc/group: time stamp 2026-11-29 07:51:36 is 34005449.832127022 s in the future tar: ./etc/ld.so.cache: time stamp 2026-12-02 23:31:27 is 34321040.831701685 s in the future tar: ./etc/.pwd.lock: time stamp 2026-11-29 07:51:36 is 34005449.831575654 s in the future tar: ./etc/skel: time stamp 2026-11-29 07:46:39 is 34005152.83134234 s in the future tar: ./etc/group-: time stamp 2026-11-29 07:46:28 is 34005141.831226033 s in the future tar: ./etc/subuid: time stamp 2026-11-29 07:46:28 is 34005141.831177956 s in the future tar: ./etc/logrotate.d: time stamp 2026-11-30 23:31:29 is 34148242.830188666 s in the future tar: ./etc/pam.d/common-session: time stamp 2026-11-29 07:46:40 is 34005153.830032957 s in the future tar: ./etc/pam.d/common-password: time stamp 2026-11-29 07:46:40 is 34005153.829934611 s in the future tar: ./etc/pam.d/common-account: time stamp 2026-11-29 07:46:40 is 34005153.829814256 s in the future tar: ./etc/pam.d/common-session-noninteractive: time stamp 2026-11-29 07:46:40 is 34005153.829714593 s in the future tar: ./etc/pam.d/common-auth: time stamp 2026-11-29 07:46:40 is 34005153.829619431 s in the future tar: ./etc/pam.d: time stamp 2026-12-02 20:29:29 is 34310122.82934106 s in the future tar: ./etc/subgid: time stamp 2026-11-29 07:46:28 is 34005141.829245289 s in the future tar: ./etc/passwd-: time stamp 2026-11-29 07:46:28 is 34005141.829152929 s in the future tar: ./etc/environment: time stamp 2026-11-29 07:46:40 is 34005153.828825482 s in the future tar: ./etc/perl/Net: time stamp 2026-11-29 07:50:24 is 34005377.828649447 s in the future tar: ./etc/perl: time stamp 2026-11-29 07:50:02 is 34005355.828626282 s in the future tar: ./etc/selinux: time stamp 2026-11-29 07:51:27 is 34005440.828439637 s in the future tar: ./etc/kernel: time 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in the future tar: ./usr/share/locale/lt: time stamp 2026-11-29 07:46:26 is 34005133.31998436 s in the future tar: ./usr/share/locale/es/LC_TIME: time stamp 2026-11-29 07:46:31 is 34005138.319958312 s in the future tar: ./usr/share/locale/es: time stamp 2026-11-29 07:46:26 is 34005133.319935421 s in the future tar: ./usr/share/locale/be/LC_TIME: time stamp 2026-11-29 07:46:31 is 34005138.319912409 s in the future tar: ./usr/share/locale/sv/LC_TIME: time stamp 2026-11-29 07:46:31 is 34005138.319870685 s in the future tar: ./usr/share/locale/sv: time stamp 2026-11-29 07:46:26 is 34005133.319841144 s in the future tar: ./usr/share/locale/hu/LC_TIME: time stamp 2026-11-29 07:46:31 is 34005138.319800268 s in the future tar: ./usr/share/locale/hu: time stamp 2026-11-29 07:46:26 is 34005133.319774566 s in the future tar: ./usr/share/locale/tr/LC_TIME: time stamp 2026-11-29 07:46:31 is 34005138.319748976 s in the future tar: ./usr/share/locale/tr: time stamp 2026-11-29 07:46:26 is 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2026-11-29 07:46:26 is 34005133.319490489 s in the future tar: ./usr/share/locale/pt/LC_TIME: time stamp 2026-11-29 07:46:31 is 34005138.319465483 s in the future tar: ./usr/share/locale/pt: time stamp 2026-11-29 07:46:26 is 34005133.319442741 s in the future tar: ./usr/share/locale/uk/LC_TIME: time stamp 2026-11-29 07:46:31 is 34005138.31941808 s in the future tar: ./usr/share/locale/uk: time stamp 2026-11-29 07:46:26 is 34005133.319395229 s in the future tar: ./usr/share/locale/id/LC_TIME: time stamp 2026-11-29 07:46:31 is 34005138.319368846 s in the future tar: ./usr/share/locale/id: time stamp 2026-11-29 07:46:26 is 34005133.319345381 s in the future tar: ./usr/share/locale/fi/LC_TIME: time stamp 2026-11-29 07:46:31 is 34005138.319320158 s in the future tar: ./usr/share/locale/fi: time stamp 2026-11-29 07:46:26 is 34005133.319297268 s in the future tar: ./usr/share/locale/fr/LC_TIME: time stamp 2026-11-29 07:46:31 is 34005138.319272089 s in the future tar: ./usr/share/locale/fr: time stamp 2026-11-29 07:46:26 is 34005133.319250013 s in the future tar: ./usr/share/locale: time stamp 2026-11-29 07:51:38 is 34005445.319228216 s in the future tar: ./usr/share/man/sl/man1: time stamp 2026-11-29 07:46:39 is 34005146.319201945 s in the future tar: ./usr/share/man/cs/man8: time stamp 2026-11-29 07:52:01 is 34005468.319160635 s in the future tar: ./usr/share/man/cs: time stamp 2026-11-29 07:51:34 is 34005441.319136218 s in the future tar: ./usr/share/man/it/man1: time stamp 2026-11-29 07:51:39 is 34005446.319109163 s in the future tar: ./usr/share/man/it/man8: time stamp 2026-11-30 23:31:29 is 34148236.319083081 s in the future tar: ./usr/share/man/it: time stamp 2026-11-29 07:46:27 is 34005134.319061993 s in the future tar: ./usr/share/man/ja/man1: time stamp 2026-11-29 07:51:34 is 34005441.319036693 s in the future tar: ./usr/share/man/ja/man8: time stamp 2026-11-30 23:31:29 is 34148236.31901189 s in the future tar: ./usr/share/man/ja: time stamp 2026-11-29 07:46:27 is 34005134.318991443 s in the future tar: ./usr/share/man/gl/man8: time stamp 2026-11-29 07:52:01 is 34005468.318968305 s in the future tar: ./usr/share/man/gl: time stamp 2026-11-29 07:51:39 is 34005446.318947675 s in the future tar: ./usr/share/man/pl/man1: time stamp 2026-11-29 07:51:34 is 34005441.318923056 s in the future tar: ./usr/share/man/pl/man8: time stamp 2026-11-30 23:31:29 is 34148236.318897736 s in the future tar: ./usr/share/man/pl: time stamp 2026-11-29 07:46:27 is 34005134.318876105 s in the future tar: ./usr/share/man/man1: time stamp 2026-12-02 23:31:24 is 34321031.318850546 s in the future tar: ./usr/share/man/man8: time stamp 2026-12-02 20:29:29 is 34310116.318825672 s in the future tar: ./usr/share/man/de/man1: time stamp 2026-11-30 23:31:29 is 34148236.318798467 s in the future tar: ./usr/share/man/de/man8: time stamp 2026-11-30 23:31:29 is 34148236.3187739 s in the future tar: ./usr/share/man/de: time stamp 2026-11-29 07:46:41 is 34005148.318750881 s in the future tar: ./usr/share/man/es/man1: time stamp 2026-11-29 07:52:00 is 34005467.31872611 s in the future tar: ./usr/share/man/es/man8: time stamp 2026-11-30 23:31:29 is 34148236.31870303 s in the future tar: ./usr/share/man/es: time stamp 2026-11-29 07:46:27 is 34005134.318679415 s in the future tar: ./usr/share/man/sv/man1: time stamp 2026-11-29 07:52:00 is 34005467.318654605 s in the future tar: ./usr/share/man/sv: time stamp 2026-11-29 07:46:47 is 34005154.318631233 s in the future tar: ./usr/share/man/man7: time stamp 2026-11-30 23:31:29 is 34148236.318606288 s in the future tar: ./usr/share/man/fi/man8: time stamp 2026-11-29 07:52:01 is 34005468.318580383 s in the future tar: ./usr/share/man/fi: time stamp 2026-11-29 07:51:39 is 34005446.318557951 s in the future tar: ./usr/share/man/fr/man1: time stamp 2026-11-30 23:31:29 is 34148236.318532829 s in the future tar: ./usr/share/man/fr/man8: time stamp 2026-11-30 23:31:29 is 34148236.318508032 s in the future tar: ./usr/share/man/fr: time stamp 2026-11-29 07:46:41 is 34005148.318485867 s in the future tar: ./usr/share/man: time stamp 2026-11-29 07:51:39 is 34005446.31846428 s in the future tar: ./usr/share: time stamp 2026-11-29 07:51:42 is 34005449.318441754 s in the future tar: ./usr: time stamp 2026-11-29 07:46:28 is 34005135.318419459 s in the future tar: ./etc/systemd/system/timers.target.wants: time stamp 2026-11-29 07:50:27 is 34005374.318378537 s in the future tar: ./etc/systemd/system: time stamp 2026-11-29 07:46:29 is 34005136.318354907 s in the future tar: ./etc/alternatives: time stamp 2026-11-29 07:52:01 is 34005468.31831786 s in the future I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [mummer_3.23+dfsg-8.dsc] I: copying [./mummer_3.23+dfsg.orig.tar.xz] I: copying [./mummer_3.23+dfsg-8.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./mummer_3.23+dfsg-8.dsc: no acceptable signature found dpkg-source: info: extracting mummer in mummer-3.23+dfsg dpkg-source: info: unpacking mummer_3.23+dfsg.orig.tar.xz dpkg-source: info: unpacking mummer_3.23+dfsg-8.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 10_install_dirs.patch dpkg-source: info: applying 02at_docs_web.diff dpkg-source: info: applying enable_building_with_tetex.patch dpkg-source: info: applying fix_sf_privacy_breach_issue.patch dpkg-source: info: applying hardening.patch dpkg-source: info: applying spelling.patch dpkg-source: info: applying addition_from_mugsy.patch dpkg-source: info: applying 0009-improve-performance-of-delta2maf.patch dpkg-source: info: applying mummerplot.patch dpkg-source: info: applying remove-csh-dependency.patch dpkg-source: info: applying remove-csh-from-doc.patch dpkg-source: info: applying reproducible-build.patch dpkg-source: info: applying gnuplot.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2117936/tmp/hooks/D01_modify_environment starting debug: Running on ionos15-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Oct 31 03:54 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/2117936/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/2117936/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.3.3(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DIRSTACK=() DISTRIBUTION=forky EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=f13065feee6247c6a1a4cd1f92984d18 LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=2117936 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Dw5QbLMR/pbuilderrc_xEUn --distribution forky --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Dw5QbLMR/b2 --logfile b2/build.log mummer_3.23+dfsg-8.dsc' SUDO_GID=111 SUDO_HOME=/var/lib/jenkins SUDO_UID=106 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://213.165.73.152:3128 I: uname -a Linux i-capture-the-hostname 6.12.48+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.48-1 (2025-09-20) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2117936/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), texlive-latex-base, texlive-latex-recommended, texlive-fonts-recommended dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19869 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on texlive-latex-base; however: Package texlive-latex-base is not installed. pbuilder-satisfydepends-dummy depends on texlive-latex-recommended; however: Package texlive-latex-recommended is not installed. pbuilder-satisfydepends-dummy depends on texlive-fonts-recommended; however: Package texlive-fonts-recommended is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-lmodern{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbrotli1{a} libcairo2{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfontenc1{a} libfreetype6{a} libglib2.0-0t64{a} libgraphite2-3{a} libharfbuzz0b{a} libice6{a} libicu76{a} libkpathsea6{a} libmagic-mgc{a} libmagic1t64{a} libmpfi0{a} libpaper-utils{a} libpaper2{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libpotrace0{a} libproc2-0{a} libptexenc1{a} libsm6{a} libsynctex2{a} libteckit0{a} libtexlua53-5{a} libtext-charwidth-perl{a} libtext-wrapi18n-perl{a} libtool{a} libuchardet0{a} libunistring5{a} libx11-6{a} libx11-data{a} libxau6{a} libxaw7{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxi6{a} libxml2-16{a} libxmu6{a} libxpm4{a} libxrender1{a} libxt6t64{a} libzzip-0-13t64{a} lmodern{a} m4{a} man-db{a} po-debconf{a} procps{a} sensible-utils{a} t1utils{a} tex-common{a} texlive-base{a} texlive-binaries{a} texlive-fonts-recommended{a} texlive-latex-base{a} texlive-latex-recommended{a} texlive-luatex{a} ucf{a} x11-common{a} xdg-utils{a} xfonts-encodings{a} xfonts-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl dvisvgm libarchive-cpio-perl libfile-mimeinfo-perl libglib2.0-data libltdl-dev libmail-sendmail-perl libnet-dbus-perl libx11-protocol-perl linux-sysctl-defaults lynx psmisc shared-mime-info tex-gyre tipa wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 90 newly installed, 0 to remove and 0 not upgraded. Need to get 128 MB of archives. After unpacking 364 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian forky/main amd64 libexpat1 amd64 2.7.3-1 [112 kB] Get: 2 http://deb.debian.org/debian forky/main amd64 libproc2-0 amd64 2:4.0.4-9 [65.6 kB] Get: 3 http://deb.debian.org/debian forky/main amd64 procps amd64 2:4.0.4-9 [882 kB] Get: 4 http://deb.debian.org/debian forky/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get: 5 http://deb.debian.org/debian forky/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 6 http://deb.debian.org/debian forky/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 7 http://deb.debian.org/debian forky/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 8 http://deb.debian.org/debian forky/main amd64 gettext-base amd64 0.23.1-2+b1 [244 kB] Get: 9 http://deb.debian.org/debian forky/main amd64 libuchardet0 amd64 0.0.8-2 [68.5 kB] Get: 10 http://deb.debian.org/debian forky/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 11 http://deb.debian.org/debian forky/main amd64 bsdextrautils amd64 2.41.2-4 [98.5 kB] Get: 12 http://deb.debian.org/debian forky/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 13 http://deb.debian.org/debian forky/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 14 http://deb.debian.org/debian forky/main amd64 libtext-charwidth-perl amd64 0.04-11+b4 [9476 B] Get: 15 http://deb.debian.org/debian forky/main amd64 libtext-wrapi18n-perl all 0.06-10 [8808 B] Get: 16 http://deb.debian.org/debian forky/main amd64 ucf all 3.0052 [43.3 kB] Get: 17 http://deb.debian.org/debian forky/main amd64 m4 amd64 1.4.20-2 [325 kB] Get: 18 http://deb.debian.org/debian forky/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 19 http://deb.debian.org/debian forky/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 20 http://deb.debian.org/debian forky/main amd64 automake all 1:1.18.1-2 [877 kB] Get: 21 http://deb.debian.org/debian forky/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 22 http://deb.debian.org/debian forky/main amd64 libdebhelper-perl all 13.28 [92.4 kB] Get: 23 http://deb.debian.org/debian forky/main amd64 libtool all 2.5.4-7 [540 kB] Get: 24 http://deb.debian.org/debian forky/main amd64 dh-autoreconf all 21 [12.2 kB] Get: 25 http://deb.debian.org/debian forky/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 26 http://deb.debian.org/debian forky/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 27 http://deb.debian.org/debian forky/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 28 http://deb.debian.org/debian forky/main amd64 libelf1t64 amd64 0.193-3 [192 kB] Get: 29 http://deb.debian.org/debian forky/main amd64 dwz amd64 0.16-2 [108 kB] Get: 30 http://deb.debian.org/debian forky/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 31 http://deb.debian.org/debian forky/main amd64 libxml2-16 amd64 2.14.6+dfsg-0.1 [651 kB] Get: 32 http://deb.debian.org/debian forky/main amd64 gettext amd64 0.23.1-2+b1 [1680 kB] Get: 33 http://deb.debian.org/debian forky/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 34 http://deb.debian.org/debian forky/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 35 http://deb.debian.org/debian forky/main amd64 debhelper all 13.28 [941 kB] Get: 36 http://deb.debian.org/debian forky/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 37 http://deb.debian.org/debian forky/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 38 http://deb.debian.org/debian forky/main amd64 fontconfig-config amd64 2.15.0-2.4 [318 kB] Get: 39 http://deb.debian.org/debian forky/main amd64 fonts-lmodern all 2.005-1 [4540 kB] Get: 40 http://deb.debian.org/debian forky/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get: 41 http://deb.debian.org/debian forky/main amd64 libpng16-16t64 amd64 1.6.50-1 [282 kB] Get: 42 http://deb.debian.org/debian forky/main amd64 libfreetype6 amd64 2.13.3+dfsg-1 [452 kB] Get: 43 http://deb.debian.org/debian forky/main amd64 libfontconfig1 amd64 2.15.0-2.4 [401 kB] Get: 44 http://deb.debian.org/debian forky/main amd64 libpixman-1-0 amd64 0.46.4-1 [259 kB] Get: 45 http://deb.debian.org/debian forky/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB] Get: 46 http://deb.debian.org/debian forky/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB] Get: 47 http://deb.debian.org/debian forky/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB] Get: 48 http://deb.debian.org/debian forky/main amd64 libx11-data all 2:1.8.12-1 [343 kB] Get: 49 http://deb.debian.org/debian forky/main amd64 libx11-6 amd64 2:1.8.12-1 [815 kB] Get: 50 http://deb.debian.org/debian forky/main amd64 libxcb-render0 amd64 1.17.0-2+b1 [115 kB] Get: 51 http://deb.debian.org/debian forky/main amd64 libxcb-shm0 amd64 1.17.0-2+b1 [105 kB] Get: 52 http://deb.debian.org/debian forky/main amd64 libxext6 amd64 2:1.3.4-1+b3 [50.4 kB] Get: 53 http://deb.debian.org/debian forky/main amd64 libxrender1 amd64 1:0.9.12-1 [27.9 kB] Get: 54 http://deb.debian.org/debian forky/main amd64 libcairo2 amd64 1.18.4-1+b1 [538 kB] Get: 55 http://deb.debian.org/debian forky/main amd64 libffi8 amd64 3.5.2-2 [25.5 kB] Get: 56 http://deb.debian.org/debian forky/main amd64 libfontenc1 amd64 1:1.1.8-1+b2 [23.3 kB] Get: 57 http://deb.debian.org/debian forky/main amd64 libglib2.0-0t64 amd64 2.86.1-1 [1546 kB] Get: 58 http://deb.debian.org/debian forky/main amd64 libgraphite2-3 amd64 1.3.14-11 [76.7 kB] Get: 59 http://deb.debian.org/debian forky/main amd64 libharfbuzz0b amd64 12.1.0-1 [530 kB] Get: 60 http://deb.debian.org/debian forky/main amd64 x11-common all 1:7.7+26 [217 kB] Get: 61 http://deb.debian.org/debian forky/main amd64 libice6 amd64 2:1.1.1-1 [65.4 kB] Get: 62 http://deb.debian.org/debian forky/main amd64 libicu76 amd64 76.1-4 [9722 kB] Get: 63 http://deb.debian.org/debian forky/main amd64 libkpathsea6 amd64 2025.20250727.75242+ds-4 [154 kB] Get: 64 http://deb.debian.org/debian forky/main amd64 libmpfi0 amd64 1.5.4+ds-4 [35.5 kB] Get: 65 http://deb.debian.org/debian forky/main amd64 libpaper2 amd64 2.2.5-0.3+b2 [16.7 kB] Get: 66 http://deb.debian.org/debian forky/main amd64 libpaper-utils amd64 2.2.5-0.3+b2 [16.5 kB] Get: 67 http://deb.debian.org/debian forky/main amd64 libpotrace0 amd64 1.16-2+b2 [25.6 kB] Get: 68 http://deb.debian.org/debian forky/main amd64 libptexenc1 amd64 2025.20250727.75242+ds-4 [50.5 kB] Get: 69 http://deb.debian.org/debian forky/main amd64 libsm6 amd64 2:1.2.6-1 [37.3 kB] Get: 70 http://deb.debian.org/debian forky/main amd64 libsynctex2 amd64 2025.20250727.75242+ds-4 [58.2 kB] Get: 71 http://deb.debian.org/debian forky/main amd64 libteckit0 amd64 2.5.12+ds1-1+b1 [341 kB] Get: 72 http://deb.debian.org/debian forky/main amd64 libtexlua53-5 amd64 2025.20250727.75242+ds-4 [99.4 kB] Get: 73 http://deb.debian.org/debian forky/main amd64 libxt6t64 amd64 1:1.2.1-1.3 [208 kB] Get: 74 http://deb.debian.org/debian forky/main amd64 libxmu6 amd64 2:1.1.3-3+b4 [59.0 kB] Get: 75 http://deb.debian.org/debian forky/main amd64 libxpm4 amd64 1:3.5.17-1+b3 [56.2 kB] Get: 76 http://deb.debian.org/debian forky/main amd64 libxaw7 amd64 2:1.0.16-1 [212 kB] Get: 77 http://deb.debian.org/debian forky/main amd64 libxi6 amd64 2:1.8.2-1 [78.9 kB] Get: 78 http://deb.debian.org/debian forky/main amd64 libzzip-0-13t64 amd64 0.13.78+dfsg.1-0.2 [59.2 kB] Get: 79 http://deb.debian.org/debian forky/main amd64 tex-common all 6.19 [29.4 kB] Get: 80 http://deb.debian.org/debian forky/main amd64 xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get: 81 http://deb.debian.org/debian forky/main amd64 xfonts-utils amd64 1:7.7+7 [93.3 kB] Get: 82 http://deb.debian.org/debian forky/main amd64 lmodern all 2.005-1 [9480 kB] Get: 83 http://deb.debian.org/debian forky/main amd64 t1utils amd64 1.41-4 [62.1 kB] Get: 84 http://deb.debian.org/debian forky/main amd64 texlive-binaries amd64 2025.20250727.75242+ds-4 [7261 kB] Get: 85 http://deb.debian.org/debian forky/main amd64 xdg-utils all 1.2.1-2 [75.8 kB] Get: 86 http://deb.debian.org/debian forky/main amd64 texlive-base all 2025.20250927-3 [23.1 MB] Get: 87 http://deb.debian.org/debian forky/main amd64 texlive-fonts-recommended all 2025.20250927-3 [4992 kB] Get: 88 http://deb.debian.org/debian forky/main amd64 texlive-luatex all 2025.20250927-3 [36.0 MB] Get: 89 http://deb.debian.org/debian forky/main amd64 texlive-latex-base all 2025.20250927-3 [1320 kB] Get: 90 http://deb.debian.org/debian forky/main amd64 texlive-latex-recommended all 2025.20250927-3 [8509 kB] Fetched 128 MB in 1s (104 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19869 files and directories currently installed.) Preparing to unpack .../00-libexpat1_2.7.3-1_amd64.deb ... Unpacking libexpat1:amd64 (2.7.3-1) ... Selecting previously unselected package libproc2-0:amd64. Preparing to unpack .../01-libproc2-0_2%3a4.0.4-9_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.4-9) ... Selecting previously unselected package procps. 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Unpacking libuchardet0:amd64 (0.0.8-2) ... Selecting previously unselected package groff-base. Preparing to unpack .../09-groff-base_1.23.0-9_amd64.deb ... Unpacking groff-base (1.23.0-9) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../10-bsdextrautils_2.41.2-4_amd64.deb ... Unpacking bsdextrautils (2.41.2-4) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../11-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../12-man-db_2.13.1-1_amd64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package libtext-charwidth-perl:amd64. Preparing to unpack .../13-libtext-charwidth-perl_0.04-11+b4_amd64.deb ... Unpacking libtext-charwidth-perl:amd64 (0.04-11+b4) ... Selecting previously unselected package libtext-wrapi18n-perl. Preparing to unpack .../14-libtext-wrapi18n-perl_0.06-10_all.deb ... 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Selecting previously unselected package libgraphite2-3:amd64. Preparing to unpack .../57-libgraphite2-3_1.3.14-11_amd64.deb ... Unpacking libgraphite2-3:amd64 (1.3.14-11) ... Selecting previously unselected package libharfbuzz0b:amd64. Preparing to unpack .../58-libharfbuzz0b_12.1.0-1_amd64.deb ... Unpacking libharfbuzz0b:amd64 (12.1.0-1) ... Selecting previously unselected package x11-common. Preparing to unpack .../59-x11-common_1%3a7.7+26_all.deb ... Unpacking x11-common (1:7.7+26) ... Selecting previously unselected package libice6:amd64. Preparing to unpack .../60-libice6_2%3a1.1.1-1_amd64.deb ... Unpacking libice6:amd64 (2:1.1.1-1) ... Selecting previously unselected package libicu76:amd64. Preparing to unpack .../61-libicu76_76.1-4_amd64.deb ... Unpacking libicu76:amd64 (76.1-4) ... Selecting previously unselected package libkpathsea6:amd64. Preparing to unpack .../62-libkpathsea6_2025.20250727.75242+ds-4_amd64.deb ... Unpacking libkpathsea6:amd64 (2025.20250727.75242+ds-4) ... Selecting previously unselected package libmpfi0:amd64. Preparing to unpack .../63-libmpfi0_1.5.4+ds-4_amd64.deb ... Unpacking libmpfi0:amd64 (1.5.4+ds-4) ... Selecting previously unselected package libpaper2:amd64. Preparing to unpack .../64-libpaper2_2.2.5-0.3+b2_amd64.deb ... Unpacking libpaper2:amd64 (2.2.5-0.3+b2) ... Selecting previously unselected package libpaper-utils. Preparing to unpack .../65-libpaper-utils_2.2.5-0.3+b2_amd64.deb ... Unpacking libpaper-utils (2.2.5-0.3+b2) ... Selecting previously unselected package libpotrace0:amd64. Preparing to unpack .../66-libpotrace0_1.16-2+b2_amd64.deb ... Unpacking libpotrace0:amd64 (1.16-2+b2) ... Selecting previously unselected package libptexenc1:amd64. Preparing to unpack .../67-libptexenc1_2025.20250727.75242+ds-4_amd64.deb ... Unpacking libptexenc1:amd64 (2025.20250727.75242+ds-4) ... Selecting previously unselected package libsm6:amd64. Preparing to unpack .../68-libsm6_2%3a1.2.6-1_amd64.deb ... Unpacking libsm6:amd64 (2:1.2.6-1) ... Selecting previously unselected package libsynctex2:amd64. Preparing to unpack .../69-libsynctex2_2025.20250727.75242+ds-4_amd64.deb ... Unpacking libsynctex2:amd64 (2025.20250727.75242+ds-4) ... Selecting previously unselected package libteckit0:amd64. Preparing to unpack .../70-libteckit0_2.5.12+ds1-1+b1_amd64.deb ... Unpacking libteckit0:amd64 (2.5.12+ds1-1+b1) ... Selecting previously unselected package libtexlua53-5:amd64. Preparing to unpack .../71-libtexlua53-5_2025.20250727.75242+ds-4_amd64.deb ... Unpacking libtexlua53-5:amd64 (2025.20250727.75242+ds-4) ... Selecting previously unselected package libxt6t64:amd64. Preparing to unpack .../72-libxt6t64_1%3a1.2.1-1.3_amd64.deb ... Unpacking libxt6t64:amd64 (1:1.2.1-1.3) ... Selecting previously unselected package libxmu6:amd64. Preparing to unpack .../73-libxmu6_2%3a1.1.3-3+b4_amd64.deb ... Unpacking libxmu6:amd64 (2:1.1.3-3+b4) ... Selecting previously unselected package libxpm4:amd64. Preparing to unpack .../74-libxpm4_1%3a3.5.17-1+b3_amd64.deb ... Unpacking libxpm4:amd64 (1:3.5.17-1+b3) ... Selecting previously unselected package libxaw7:amd64. Preparing to unpack .../75-libxaw7_2%3a1.0.16-1_amd64.deb ... Unpacking libxaw7:amd64 (2:1.0.16-1) ... Selecting previously unselected package libxi6:amd64. Preparing to unpack .../76-libxi6_2%3a1.8.2-1_amd64.deb ... Unpacking libxi6:amd64 (2:1.8.2-1) ... Selecting previously unselected package libzzip-0-13t64:amd64. Preparing to unpack .../77-libzzip-0-13t64_0.13.78+dfsg.1-0.2_amd64.deb ... Unpacking libzzip-0-13t64:amd64 (0.13.78+dfsg.1-0.2) ... Selecting previously unselected package tex-common. Preparing to unpack .../78-tex-common_6.19_all.deb ... Unpacking tex-common (6.19) ... Selecting previously unselected package xfonts-encodings. Preparing to unpack .../79-xfonts-encodings_1%3a1.0.4-2.2_all.deb ... Unpacking xfonts-encodings (1:1.0.4-2.2) ... Selecting previously unselected package xfonts-utils. 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Preparing to unpack .../86-texlive-fonts-recommended_2025.20250927-3_all.deb ... Unpacking texlive-fonts-recommended (2025.20250927-3) ... Selecting previously unselected package texlive-luatex. Preparing to unpack .../87-texlive-luatex_2025.20250927-3_all.deb ... Unpacking texlive-luatex (2025.20250927-3) ... Selecting previously unselected package texlive-latex-base. Preparing to unpack .../88-texlive-latex-base_2025.20250927-3_all.deb ... Unpacking texlive-latex-base (2025.20250927-3) ... Selecting previously unselected package texlive-latex-recommended. Preparing to unpack .../89-texlive-latex-recommended_2025.20250927-3_all.deb ... Unpacking texlive-latex-recommended (2025.20250927-3) ... Setting up libexpat1:amd64 (2.7.3-1) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up libgraphite2-3:amd64 (1.3.14-11) ... Setting up libpixman-1-0:amd64 (0.46.4-1) ... Setting up libtext-charwidth-perl:amd64 (0.04-11+b4) ... Setting up libxau6:amd64 (1:1.0.11-1) ... Setting up libxdmcp6:amd64 (1:1.1.5-1) ... Setting up libxcb1:amd64 (1.17.0-2+b1) ... Setting up bsdextrautils (2.41.2-4) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libxcb-render0:amd64 (1.17.0-2+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libxml2-16:amd64 (2.14.6+dfsg-0.1) ... Setting up libdebhelper-perl (13.28) ... Setting up libbrotli1:amd64 (1.1.0-2+b7) ... Setting up libmagic1t64:amd64 (1:5.46-5) ... Setting up x11-common (1:7.7+26) ... invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up gettext-base (0.23.1-2+b1) ... Setting up m4 (1.4.20-2) ... Setting up libxcb-shm0:amd64 (1.17.0-2+b1) ... Setting up file (1:5.46-5) ... Setting up libtext-wrapi18n-perl (0.06-10) ... Setting up libelf1t64:amd64 (0.193-3) ... Setting up libfontenc1:amd64 (1:1.1.8-1+b2) ... Setting up autotools-dev (20240727.1) ... Setting up libzzip-0-13t64:amd64 (0.13.78+dfsg.1-0.2) ... Setting up libx11-data (2:1.8.12-1) ... Setting up libteckit0:amd64 (2.5.12+ds1-1+b1) ... Setting up xfonts-encodings (1:1.0.4-2.2) ... Setting up t1utils (1.41-4) ... Setting up libtexlua53-5:amd64 (2025.20250727.75242+ds-4) ... Setting up libproc2-0:amd64 (2:4.0.4-9) ... Setting up libunistring5:amd64 (1.3-2) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libpng16-16t64:amd64 (1.6.50-1) ... Setting up autopoint (0.23.1-2) ... Setting up libmpfi0:amd64 (1.5.4+ds-4) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up libkpathsea6:amd64 (2025.20250727.75242+ds-4) ... Setting up autoconf (2.72-3.1) ... Setting up libffi8:amd64 (3.5.2-2) ... Setting up dwz (0.16-2) ... Setting up sensible-utils (0.0.26) ... Setting up libuchardet0:amd64 (0.0.8-2) ... Setting up procps (2:4.0.4-9) ... Setting up fonts-lmodern (2.005-1) ... Setting up libx11-6:amd64 (2:1.8.12-1) ... Setting up libicu76:amd64 (76.1-4) ... Setting up libpaper2:amd64 (2.2.5-0.3+b2) ... Setting up xdg-utils (1.2.1-2) ... update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode Setting up libsynctex2:amd64 (2025.20250727.75242+ds-4) ... Setting up libpotrace0:amd64 (1.16-2+b2) ... Setting up automake (1:1.18.1-2) ... update-alternatives: using /usr/bin/automake-1.18 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up libice6:amd64 (2:1.1.1-1) ... Setting up gettext (0.23.1-2+b1) ... Setting up libxpm4:amd64 (1:3.5.17-1+b3) ... Setting up libxrender1:amd64 (1:0.9.12-1) ... Setting up libtool (2.5.4-7) ... Setting up fontconfig-config (2.15.0-2.4) ... Setting up libxext6:amd64 (2:1.3.4-1+b3) ... Setting up libpaper-utils (2.2.5-0.3+b2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (21) ... Setting up libglib2.0-0t64:amd64 (2.86.1-1) ... No schema files found: doing nothing. Setting up libptexenc1:amd64 (2025.20250727.75242+ds-4) ... Setting up libfreetype6:amd64 (2.13.3+dfsg-1) ... Setting up ucf (3.0052) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up groff-base (1.23.0-9) ... Setting up libharfbuzz0b:amd64 (12.1.0-1) ... Setting up libfontconfig1:amd64 (2.15.0-2.4) ... Setting up libsm6:amd64 (2:1.2.6-1) ... Setting up libxi6:amd64 (2:1.8.2-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up xfonts-utils (1:7.7+7) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libcairo2:amd64 (1.18.4-1+b1) ... Setting up tex-common (6.19) ... update-language: texlive-base not installed and configured, doing nothing! Setting up libxt6t64:amd64 (1:1.2.1-1.3) ... Setting up lmodern (2.005-1) ... Setting up libxmu6:amd64 (2:1.1.3-3+b4) ... Setting up debhelper (13.28) ... Setting up libxaw7:amd64 (2:1.0.16-1) ... Setting up texlive-binaries (2025.20250727.75242+ds-4) ... update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode Setting up texlive-base (2025.20250927-3) ... tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex Setting up texlive-luatex (2025.20250927-3) ... Setting up texlive-latex-base (2025.20250927-3) ... Setting up texlive-latex-recommended (2025.20250927-3) ... Setting up texlive-fonts-recommended (2025.20250927-3) ... Processing triggers for libc-bin (2.41-12) ... Processing triggers for tex-common (6.19) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Building format(s) --all. This may take some time... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/2117936/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for forky I: user script /srv/workspace/pbuilder/2117936/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/mummer-3.23+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../mummer_3.23+dfsg-8_source.changes dpkg-buildpackage: info: source package mummer dpkg-buildpackage: info: source version 3.23+dfsg-8 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_auto_clean make -j42 clean make[1]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg' rm -f *~ core* cd /build/reproducible-path/mummer-3.23+dfsg/src/kurtz; make clean make[2]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg/src/kurtz' rm -f *~ cd libbasedir; make clean make[3]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir' rm -f *.splint rm -f *.[oa] *.dbg.o *.inc *.aux *.dvi *.log *~ make[3]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir' cd streesrc; make clean make[3]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc' rm -f *.splint rm -f *.[aox] *~ make[3]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc' cd mm3src; make clean make[3]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/mm3src' rm -f *.splint rm -f *.[ox] shit[123] *~ cd /build/reproducible-path/mummer-3.23+dfsg; rm -f maxmat3.x maxmat3.dbg.x mummer make[3]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/mm3src' make[2]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg/src/kurtz' cd /build/reproducible-path/mummer-3.23+dfsg/src/tigr; make clean make[2]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg/src/tigr' rm -f *.o *~ cd /build/reproducible-path/mummer-3.23+dfsg; rm -f annotate combineMUMs delta-filter gaps mgaps postnuc postpro prenuc prepro repeat-match show-aligns show-coords show-tiling show-snps show-diff delta2blocks delta2maf cd /build/reproducible-path/mummer-3.23+dfsg/aux_bin; rm -f annotate combineMUMs delta-filter gaps mgaps postnuc postpro prenuc prepro repeat-match show-aligns show-coords show-tiling show-snps show-diff delta2blocks delta2maf make[2]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg/src/tigr' cd /build/reproducible-path/mummer-3.23+dfsg/scripts; make clean make[2]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg/scripts' rm -f *~ cd /build/reproducible-path/mummer-3.23+dfsg; rm -f exact-tandems mapview mummerplot nucmer promer run-mummer1 run-mummer3 nucmer2xfig dnadiff make[2]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg/scripts' cd /build/reproducible-path/mummer-3.23+dfsg/docs; make clean make[2]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg/docs' rm -f *.dvi *.aux *.log *.out *~ maxmat3man.pdf make[2]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg/docs' make[1]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg' [ -d /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin ] || mkdir -p /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin [ -d /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/lib/mummer ] || mkdir -p /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/lib/mummer dh_auto_build -- BIN_DIR=/build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin AUX_BIN_DIR=/build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/lib/mummer \ FINAL_BIN_DIR=/usr/bin FINAL_AUX_BIN_DIR=/usr/lib/mummer \ FINAL_SCRIPT_DIR=/usr/share/perl5/ \ CFLAGS="-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc" CXXFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection" LDFLAGS="-Wl,-z,relro -Wl,-z,now" make -j42 INSTALL="install --strip-program=true" BIN_DIR=/build/reproducible-path/mummer-3.23\+dfsg/debian/tmp/usr/bin AUX_BIN_DIR=/build/reproducible-path/mummer-3.23\+dfsg/debian/tmp/usr/lib/mummer FINAL_BIN_DIR=/usr/bin FINAL_AUX_BIN_DIR=/usr/lib/mummer FINAL_SCRIPT_DIR=/usr/share/perl5/ CFLAGS="-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc" CXXFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection" LDFLAGS="-Wl,-z,relro -Wl,-z,now" make[2]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg' cd /build/reproducible-path/mummer-3.23+dfsg/src/kurtz; make mummer cd /build/reproducible-path/mummer-3.23+dfsg/src/tigr; make CFLAGS="-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc" CXXFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection" LDFLAGS="-Wl,-z,relro -Wl,-z,now" all cd /build/reproducible-path/mummer-3.23+dfsg/scripts; make all make[3]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg/src/kurtz' cd libbasedir; make libbase.a make[3]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg/scripts' make[3]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg/src/tigr' /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 tigrinc.cc -c -o tigrinc.o cp -a ../debian/sh-replacement-scripts/exact-tandems /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin make[4]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir' /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cleanMUMcand.o cleanMUMcand.c /usr/bin/sed -e 's?__PERL_PATH?/usr/bin/perl?g' \ -e 's?__SCRIPT_DIR?/usr/share/perl5/?g' \ mapview.pl > /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/mapview /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 delta.cc -c -o delta.o /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 sw_align.cc -c -o sw_align.o /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 translate.cc -c -o translate.o /usr/bin/sed -e 's?__PERL_PATH?/usr/bin/perl?g' \ -e 's?__SCRIPT_DIR?/usr/share/perl5/?g' \ -e 's?__BIN_DIR?/usr/bin?g' \ mummerplot.pl > /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/mummerplot /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o clock.o clock.c /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mapfile.o mapfile.c chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/exact-tandems /usr/bin/sed -e 's?__PERL_PATH?/usr/bin/perl?g' \ -e 's?__SCRIPT_DIR?/usr/share/perl5/?g' \ -e 's?__AUX_BIN_DIR?/usr/lib/mummer?g' \ -e 's?__BIN_DIR?/usr/bin?g' \ nucmer.pl > /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/nucmer chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/mummerplot /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o multiseq.o multiseq.c /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o procopt.o procopt.c chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/mapview /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o safescpy.o safescpy.c /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o seterror.o seterror.c /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o space.o space.c /usr/bin/sed -e 's?__PERL_PATH?/usr/bin/perl?g' \ -e 's?__SCRIPT_DIR?/usr/share/perl5/?g' \ -e 's?__AUX_BIN_DIR?/usr/lib/mummer?g' \ -e 's?__BIN_DIR?/usr/bin?g' \ promer.pl > /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/promer cp -a ../debian/sh-replacement-scripts/run-mummer1 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin cp -a ../debian/sh-replacement-scripts/run-mummer3 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/run-mummer1 /usr/bin/sed -e 's?__PERL_PATH?/usr/bin/perl?g' \ nucmer2xfig.pl > /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/nucmer2xfig chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/nucmer chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/promer chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/run-mummer3 /usr/bin/sed -e 's?__PERL_PATH?/usr/bin/perl?g' \ -e 's?__SCRIPT_DIR?/usr/share/perl5/?g' \ -e 's?__BIN_DIR?/usr/bin?g' \ dnadiff.pl > /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/dnadiff chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/nucmer2xfig chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/dnadiff make[3]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg/scripts' ar sruv libbase.a cleanMUMcand.o clock.o mapfile.o multiseq.o procopt.o safescpy.o seterror.o space.o ar: `u' modifier ignored since `D' is the default (see `U') ar: creating libbase.a a - cleanMUMcand.o a - clock.o a - mapfile.o a - multiseq.o a - procopt.o a - safescpy.o a - seterror.o a - space.o make[4]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir' cd streesrc; make libstree.a make[4]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc' /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o construct.o construct.c /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o access.o access.c /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o scanpref.o scanpref.c /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o linkloc.o linkloc.c /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o depthtab.o depthtab.c /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ex2leav.o ex2leav.c /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o dfs.o dfs.c /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o overmax.o overmax.c /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o oversucc.o oversucc.c /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o addleafcount.o addleafcount.c /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o iterator.o iterator.c tigrinc.cc: In function 'int Read_String(FILE*, char*&, long int&, char*, int)': tigrinc.cc:335:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 335 | fgets (Line, MAX_LINE, fp); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ tigrinc.cc: In function 'int Read_File(FILE*, long int&, std::map, char*>&, int)': tigrinc.cc:452:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 452 | fgets (Line, MAX_LINE, fp); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ar sruv libstree.a construct.o access.o scanpref.o linkloc.o depthtab.o ex2leav.o dfs.o overmax.o oversucc.o addleafcount.o iterator.o ar: `u' modifier ignored since `D' is the default (see `U') ar: creating libstree.a a - construct.o a - access.o a - scanpref.o a - linkloc.o a - depthtab.o a - ex2leav.o a - dfs.o a - overmax.o a - oversucc.o a - addleafcount.o a - iterator.o make[4]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc' cd mm3src; make mummer make[4]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/mm3src' /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -I../streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o maxmat3.o maxmat3.c /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -I../streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o maxmatopt.o maxmatopt.c /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -I../streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o maxmatinp.o maxmatinp.c /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -I../streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o findmumcand.o findmumcand.c /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -I../streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o findmaxmat.o findmaxmat.c /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -I../streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o procmaxmat.o procmaxmat.c /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now annotate.cc tigrinc.o -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/annotate; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/annotate /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now combineMUMs.cc tigrinc.o -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/combineMUMs; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/combineMUMs /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now gaps.cc tigrinc.o -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/gaps; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/gaps /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now mgaps.cc tigrinc.o -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/mgaps; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/mgaps /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now postnuc.cc tigrinc.o sw_align.o -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/lib/mummer/postnuc; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/lib/mummer/postnuc /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now postpro.cc tigrinc.o sw_align.o translate.o -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/lib/mummer/postpro; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/lib/mummer/postpro /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now prenuc.cc tigrinc.o -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/lib/mummer/prenuc; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/lib/mummer/prenuc /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now prepro.cc tigrinc.o translate.o -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/lib/mummer/prepro; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/lib/mummer/prepro /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now repeat-match.cc tigrinc.o -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/repeat-match; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/repeat-match /usr/bin/gcc -Wl,-z,relro -Wl,-z,now maxmat3.o maxmatopt.o maxmatinp.o findmumcand.o findmaxmat.o procmaxmat.o ../streesrc/libstree.a ../libbasedir/libbase.a \ -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/mummer; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/mummer make[4]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/mm3src' make[3]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg/src/kurtz' combineMUMs.cc:26:38: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 26 | #define DEFAULT_ERROR_FILE_NAME "witherrors.gaps" | ^~~~~~~~~~~~~~~~~ combineMUMs.cc:109:27: note: in expansion of macro 'DEFAULT_ERROR_FILE_NAME' 109 | char * Error_File_Name = DEFAULT_ERROR_FILE_NAME; | ^~~~~~~~~~~~~~~~~~~~~~~ combineMUMs.cc:135:24: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 135 | char * Query_Suffix = "Query"; | ^~~~~~~ combineMUMs.cc:145:22: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 145 | char * Ref_Suffix = "Ref"; | ^~~~~ combineMUMs.cc: In function 'int Read_String(FILE*, char**, long int*, char*)': combineMUMs.cc:1481:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 1481 | fgets (Line, MAX_LINE, fp); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ mgaps.cc: In function 'int Process_Cluster(Match_t*, int, char*)': mgaps.cc:533:20: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 533 | label = "#\n"; | ^~~~~ mgaps.cc: In function 'void Process_Matches(Match_t*, int, char*)': mgaps.cc:620:19: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 620 | label = "#\n"; | ^~~~~ /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now delta-filter.cc tigrinc.o delta.o -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/delta-filter; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/delta-filter /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now show-aligns.cc tigrinc.o translate.o delta.o -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/show-aligns; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/show-aligns /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now show-coords.cc tigrinc.o delta.o -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/show-coords; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/show-coords /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now show-tiling.cc tigrinc.o delta.o -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/show-tiling; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/show-tiling /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now show-snps.cc tigrinc.o translate.o delta.o -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/show-snps; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/show-snps /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now show-diff.cc tigrinc.o delta.o -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/show-diff; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/show-diff /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now delta2blocks.cc tigrinc.o translate.o delta.o -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/delta2blocks; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/delta2blocks /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now delta2maf.cc tigrinc.o translate.o delta.o -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/delta2maf; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/delta2maf delta2maf.cc: In function 'void printAlignments(std::vector, char*, char*, std::map, char*>&)': delta2maf.cc:547:24: warning: format '%d' expects argument of type 'int', but argument 2 has type 'long int' [-Wformat=] 547 | printf("a score=%d\n",abs(Ap->eR - Ap->sR)); | ~^ ~~~~~~~~~~~~~~~~~~~~ | | | | int long int | %ld delta2maf.cc:587:27: warning: format '%d' expects argument of type 'int', but argument 3 has type 'long int' [-Wformat=] 587 | printf("s %s %d %d %s %d ", IdQ, sQ-1, eQ-sQ+1, "-",SeqLenQ); | ~^ ~~~~ | | | | int long int | %ld delta2maf.cc:587:30: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long int' [-Wformat=] 587 | printf("s %s %d %d %s %d ", IdQ, sQ-1, eQ-sQ+1, "-",SeqLenQ); | ~^ ~~~~~~~ | | | | int long int | %ld delta2maf.cc:587:36: warning: format '%d' expects argument of type 'int', but argument 6 has type 'long int' [-Wformat=] 587 | printf("s %s %d %d %s %d ", IdQ, sQ-1, eQ-sQ+1, "-",SeqLenQ); | ~^ ~~~~~~~ | | | | int long int | %ld delta2maf.cc:590:27: warning: format '%d' expects argument of type 'int', but argument 3 has type 'long int' [-Wformat=] 590 | printf("s %s %d %d %s %d ", IdQ, sQ-1, eQ-sQ+1, "+",SeqLenQ); | ~^ ~~~~ | | | | int long int | %ld delta2maf.cc:590:30: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long int' [-Wformat=] 590 | printf("s %s %d %d %s %d ", IdQ, sQ-1, eQ-sQ+1, "+",SeqLenQ); | ~^ ~~~~~~~ | | | | int long int | %ld delta2maf.cc:590:36: warning: format '%d' expects argument of type 'int', but argument 6 has type 'long int' [-Wformat=] 590 | printf("s %s %d %d %s %d ", IdQ, sQ-1, eQ-sQ+1, "+",SeqLenQ); | ~^ ~~~~~~~ | | | | int long int | %ld delta2maf.cc:597:27: warning: format '%d' expects argument of type 'int', but argument 3 has type 'long int' [-Wformat=] 597 | printf("s %s %d %d %s %d ", IdR, sR-1, eR-sR+1, "-",SeqLenR); | ~^ ~~~~ | | | | int long int | %ld delta2maf.cc:597:30: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long int' [-Wformat=] 597 | printf("s %s %d %d %s %d ", IdR, sR-1, eR-sR+1, "-",SeqLenR); | ~^ ~~~~~~~ | | | | int long int | %ld delta2maf.cc:597:36: warning: format '%d' expects argument of type 'int', but argument 6 has type 'long int' [-Wformat=] 597 | printf("s %s %d %d %s %d ", IdR, sR-1, eR-sR+1, "-",SeqLenR); | ~^ ~~~~~~~ | | | | int long int | %ld delta2maf.cc:600:27: warning: format '%d' expects argument of type 'int', but argument 3 has type 'long int' [-Wformat=] 600 | printf("s %s %d %d %s %d ", IdR, sR-1, eR-sR+1, "+",SeqLenR); | ~^ ~~~~ | | | | int long int | %ld delta2maf.cc:600:30: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long int' [-Wformat=] 600 | printf("s %s %d %d %s %d ", IdR, sR-1, eR-sR+1, "+",SeqLenR); | ~^ ~~~~~~~ | | | | int long int | %ld delta2maf.cc:600:36: warning: format '%d' expects argument of type 'int', but argument 6 has type 'long int' [-Wformat=] 600 | printf("s %s %d %d %s %d ", IdR, sR-1, eR-sR+1, "+",SeqLenR); | ~^ ~~~~~~~ | | | | int long int | %ld delta2maf.cc:633:34: warning: format '%s' expects argument of type 'char*', but argument 2 has type 'char (*)[(Screen_Width + 1)]' [-Wformat=] 633 | printf("%s", &Buff2); | ~^ ~~~~~~ | | | | | char (*)[(Screen_Width + 1)] | char* delta2maf.cc:637:34: warning: format '%s' expects argument of type 'char*', but argument 2 has type 'char (*)[(Screen_Width + 1)]' [-Wformat=] 637 | printf("%s", &Buff1); | ~^ ~~~~~~ | | | | | char (*)[(Screen_Width + 1)] | char* delta2maf.cc:659:28: warning: format '%s' expects argument of type 'char*', but argument 2 has type 'char (*)[(Screen_Width + 1)]' [-Wformat=] 659 | printf("%s", &Buff2); | ~^ ~~~~~~ | | | | | char (*)[(Screen_Width + 1)] | char* delta2maf.cc:663:28: warning: format '%s' expects argument of type 'char*', but argument 2 has type 'char (*)[(Screen_Width + 1)]' [-Wformat=] 663 | printf("%s", &Buff1); | ~^ ~~~~~~ | | | | | char (*)[(Screen_Width + 1)] | char* delta2maf.cc:710:30: warning: format '%s' expects argument of type 'char*', but argument 2 has type 'char (*)[(Screen_Width + 1)]' [-Wformat=] 710 | printf("%s", &Buff2); | ~^ ~~~~~~ | | | | | char (*)[(Screen_Width + 1)] | char* delta2maf.cc:714:30: warning: format '%s' expects argument of type 'char*', but argument 2 has type 'char (*)[(Screen_Width + 1)]' [-Wformat=] 714 | printf("%s", &Buff1); | ~^ ~~~~~~ | | | | | char (*)[(Screen_Width + 1)] | char* delta2maf.cc:732:24: warning: format '%s' expects argument of type 'char*', but argument 2 has type 'char (*)[(Screen_Width + 1)]' [-Wformat=] 732 | printf("%s", &Buff2); | ~^ ~~~~~~ | | | | | char (*)[(Screen_Width + 1)] | char* delta2maf.cc:736:24: warning: format '%s' expects argument of type 'char*', but argument 2 has type 'char (*)[(Screen_Width + 1)]' [-Wformat=] 736 | printf("%s", &Buff1); | ~^ ~~~~~~ | | | | | char (*)[(Screen_Width + 1)] | char* show-coords.cc: In function 'void printBtab(std::vector)': show-coords.cc:799:12: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 799 | type = "NUCMER"; | ^~~~~~~~ show-coords.cc:801:12: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 801 | type = "PROMER"; | ^~~~~~~~ show-coords.cc:803:12: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 803 | type = "NULL"; | ^~~~~~ delta2blocks.cc: In function 'void printAlignments(std::vector, char*, char*, char*, char*)': delta2blocks.cc:408:23: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long int' [-Wformat=] 408 | printf ("%s %s %d %d %d %d ",IdR,IdQ, Ap->sR,Ap->eR,Ap->sQ,Ap->eQ); | ~^ ~~~~~~ | | | | int long int | %ld delta2blocks.cc:408:26: warning: format '%d' expects argument of type 'int', but argument 5 has type 'long int' [-Wformat=] 408 | printf ("%s %s %d %d %d %d ",IdR,IdQ, Ap->sR,Ap->eR,Ap->sQ,Ap->eQ); | ~^ ~~~~~~ | | | | int long int | %ld delta2blocks.cc:408:29: warning: format '%d' expects argument of type 'int', but argument 6 has type 'long int' [-Wformat=] 408 | printf ("%s %s %d %d %d %d ",IdR,IdQ, Ap->sR,Ap->eR,Ap->sQ,Ap->eQ); | ~^ ~~~~~~ | | | | int long int | %ld delta2blocks.cc:408:32: warning: format '%d' expects argument of type 'int', but argument 7 has type 'long int' [-Wformat=] 408 | printf ("%s %s %d %d %d %d ",IdR,IdQ, Ap->sR,Ap->eR,Ap->sQ,Ap->eQ); | ~^ ~~~~~~ | | | | int long int | %ld make[3]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg/src/tigr' make[2]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg' /usr/bin/make -C docs make[2]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg/docs' pdflatex maxmat3man This is pdfTeX, Version 3.141592653-2.6-1.40.28 (TeX Live 2025/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./maxmat3man.tex LaTeX2e <2025-06-01> patch level 1 L3 programming layer <2025-09-02> (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls Document Class: article 2025/01/22 v1.4n Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo)) (/usr/share/texlive/texmf-dist/tex/latex/ntgclass/a4.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) (./skaff.sty) (./optionman.sty) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd) (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) No file maxmat3man.aux. (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) LaTeX Warning: Reference `SecBasicNotions' on page 1 undefined on input line 36 . Overfull \hbox (4.79204pt too wide) in paragraph at lines 60--61 \OT1/ptm/m/n/12 Compute \OT1/ptm/m/it/12 MUM\OT1/ptm/m/n/12 -candidates, i.e. m atches that are unique in the reference-sequence [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}{/usr/share/texlive/texmf- dist/fonts/enc/dvips/base/8r.enc}] LaTeX Warning: Reference `SecBasicNotions' on page 2 undefined on input line 10 4. [2] [3] Overfull \hbox (8.54073pt too wide) in paragraph at lines 225--225 []\OT1/pcr/m/n/10.95 # ........................................................ ......[] [4] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALL2_BOVIN|ALLERGEN 139 1 155 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALG3_YEAST|PUTATIVE 425 2 904 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALF_TRYBB|FRUCTOSE-BISPHOSPHATE 177 4 794 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALGB_YEAST|ALG11 114 12 599 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALR_SYNY3|ALANINE 354 33 261 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALGB_PSEAE|ALGINATE 212 40 991 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALGB_PSEAE|ALGINATE 314 41 093 7[] [5] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALGB_PSEAE|ALGINATE 360 41 138 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALR_SYNY3|ALANINE 79 44 186 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALP_CEPAC|ALKALINE 366 45 304 7[] [6] [7] (./maxmat3man.aux) LaTeX Warning: There were undefined references. LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. ) (see the transcript file for additional information)< /usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmb8a.pfb> Output written on maxmat3man.pdf (7 pages, 132594 bytes). Transcript written on maxmat3man.log. pdflatex maxmat3man This is pdfTeX, Version 3.141592653-2.6-1.40.28 (TeX Live 2025/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./maxmat3man.tex LaTeX2e <2025-06-01> patch level 1 L3 programming layer <2025-09-02> (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls Document Class: article 2025/01/22 v1.4n Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo)) (/usr/share/texlive/texmf-dist/tex/latex/ntgclass/a4.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) (./skaff.sty) (./optionman.sty) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd) (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) (./maxmat3man.aux) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) Overfull \hbox (4.79204pt too wide) in paragraph at lines 60--61 \OT1/ptm/m/n/12 Compute \OT1/ptm/m/it/12 MUM\OT1/ptm/m/n/12 -candidates, i.e. m atches that are unique in the reference-sequence [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}{/usr/share/texlive/texmf- dist/fonts/enc/dvips/base/8r.enc}] [2] [3] Overfull \hbox (8.54073pt too wide) in paragraph at lines 225--225 []\OT1/pcr/m/n/10.95 # ........................................................ ......[] [4] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALL2_BOVIN|ALLERGEN 139 1 155 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALG3_YEAST|PUTATIVE 425 2 904 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALF_TRYBB|FRUCTOSE-BISPHOSPHATE 177 4 794 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALGB_YEAST|ALG11 114 12 599 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALR_SYNY3|ALANINE 354 33 261 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALGB_PSEAE|ALGINATE 212 40 991 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALGB_PSEAE|ALGINATE 314 41 093 7[] [5] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALGB_PSEAE|ALGINATE 360 41 138 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALR_SYNY3|ALANINE 79 44 186 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALP_CEPAC|ALKALINE 366 45 304 7[] [6] [7] (./maxmat3man.aux) ) (see the transcript file for additional information)< /usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmb8a.pfb> Output written on maxmat3man.pdf (7 pages, 131942 bytes). Transcript written on maxmat3man.log. make[2]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg/docs' make[1]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg' dh_auto_test make -j42 check make[1]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg' check complete make[1]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg' create-stamp debian/debhelper-build-stamp debian/rules override_dh_prep make[1]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg' dh_prep -X debian/tmp make[1]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg' debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg' mv /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/annotate /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/mummer-annotate make[1]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg' dh_install dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism debian/rules override_dh_compress make[1]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg' dh_compress -Xpdf make[1]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg' dh_fixperms dh_missing dh_dwz -a dwz: debian/mummer/usr/bin/mummer: DWARF compression not beneficial - old size 63722 new size 63975 dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'mummer' in '../mummer_3.23+dfsg-8_amd64.deb'. dpkg-deb: building package 'mummer-dbgsym' in '../mummer-dbgsym_3.23+dfsg-8_amd64.deb'. dpkg-deb: building package 'mummer-doc' in '../mummer-doc_3.23+dfsg-8_all.deb'. dpkg-genbuildinfo --build=binary -O../mummer_3.23+dfsg-8_amd64.buildinfo dpkg-genchanges --build=binary -O../mummer_3.23+dfsg-8_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/2117936/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/2117936/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2117936 and its subdirectories I: Current time: Fri Oct 31 18:03:56 +14 2025 I: pbuilder-time-stamp: 1761883436 + false + set +x Fri Oct 31 04:03:56 UTC 2025 I: Signing ./b2/mummer_3.23+dfsg-8_amd64.buildinfo as mummer_3.23+dfsg-8_amd64.buildinfo.asc Fri Oct 31 04:03:56 UTC 2025 I: Signed ./b2/mummer_3.23+dfsg-8_amd64.buildinfo as ./b2/mummer_3.23+dfsg-8_amd64.buildinfo.asc Fri Oct 31 04:03:56 UTC 2025 - build #2 for mummer/forky/amd64 on ionos15-amd64 done. Starting cleanup. All cleanup done. Fri Oct 31 04:03:56 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-vM96dEWY, removing. /srv/reproducible-results/rbuild-debian/r-b-build.Dw5QbLMR: total 116 drwxrwxr-x 2 jenkins jenkins 4096 Oct 31 03:54 b1 drwxrwxr-x 2 jenkins jenkins 4096 Oct 31 04:03 b2 -rw-rw-r-- 1 jenkins jenkins 2173 Dec 4 2022 mummer_3.23+dfsg-8.dsc -rw------- 1 jenkins jenkins 101410 Oct 31 03:54 rbuildlog.LGdbpp4 /srv/reproducible-results/rbuild-debian/r-b-build.Dw5QbLMR/b1: total 5704 -rw-r--r-- 1 jenkins jenkins 97838 Oct 31 03:54 build.log -rw-r--r-- 1 jenkins jenkins 3288200 Oct 31 03:54 mummer-dbgsym_3.23+dfsg-8_amd64.deb -rw-r--r-- 1 jenkins jenkins 1312988 Oct 31 03:54 mummer-doc_3.23+dfsg-8_all.deb -rw-r--r-- 1 jenkins jenkins 416352 Oct 31 03:54 mummer_3.23+dfsg-8.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2173 Oct 31 03:54 mummer_3.23+dfsg-8.dsc -rw-r--r-- 1 jenkins jenkins 6960 Oct 31 03:54 mummer_3.23+dfsg-8_amd64.buildinfo -rw-rw-r-- 1 jenkins jenkins 7842 Oct 31 03:54 mummer_3.23+dfsg-8_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1881 Oct 31 03:54 mummer_3.23+dfsg-8_amd64.changes -rw-r--r-- 1 jenkins jenkins 670380 Oct 31 03:54 mummer_3.23+dfsg-8_amd64.deb -rw-r--r-- 1 jenkins jenkins 1421 Oct 31 03:54 mummer_3.23+dfsg-8_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.Dw5QbLMR/b2: total 5956 -rw-rw-r-- 1 jenkins jenkins 373728 Oct 31 04:03 build.log -rw-r--r-- 1 jenkins jenkins 3288200 Oct 31 04:03 mummer-dbgsym_3.23+dfsg-8_amd64.deb -rw-r--r-- 1 jenkins jenkins 1312988 Oct 31 04:03 mummer-doc_3.23+dfsg-8_all.deb -rw-r--r-- 1 jenkins jenkins 416352 Oct 31 04:03 mummer_3.23+dfsg-8.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2173 Oct 31 04:03 mummer_3.23+dfsg-8.dsc -rw-rw-r-- 1 jenkins jenkins 6960 Oct 31 04:03 mummer_3.23+dfsg-8_amd64.buildinfo -rw-rw-r-- 1 jenkins jenkins 7842 Oct 31 04:03 mummer_3.23+dfsg-8_amd64.buildinfo.asc -rw-rw-r-- 1 jenkins jenkins 1881 Oct 31 04:03 mummer_3.23+dfsg-8_amd64.changes -rw-r--r-- 1 jenkins jenkins 670380 Oct 31 04:03 mummer_3.23+dfsg-8_amd64.deb -rw-rw-r-- 1 jenkins jenkins 1421 Oct 31 04:03 mummer_3.23+dfsg-8_source.changes Fri Oct 31 04:03:58 UTC 2025 I: Deleting $TMPDIR on ionos15-amd64.debian.net. Fri Oct 31 04:03:58 UTC 2025 I: mummer_3.23+dfsg-8_amd64.changes: Format: 1.8 Date: Sun, 04 Dec 2022 12:29:43 +0100 Source: mummer Binary: mummer mummer-dbgsym mummer-doc Architecture: amd64 all Version: 3.23+dfsg-8 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: mummer - Efficient sequence alignment of full genomes mummer-doc - Documentation for MUMmer Closes: 956751 Changes: mummer (3.23+dfsg-8) unstable; urgency=medium . * d/watch: Fix name of upstream tarball * Apply hint by Étienne Mollier to fit current gnuplot version Closes: #956751 * Use secure URI in Homepage field. * Update standards version to 4.6.1, no changes needed. Checksums-Sha1: c89562cda5fe11beec6da022a16ed4776c151e46 3288200 mummer-dbgsym_3.23+dfsg-8_amd64.deb 98dc5bd766db5fbd8370bffcd314ac3dba3e18c3 1312988 mummer-doc_3.23+dfsg-8_all.deb b45e6a4ab9fbf3e3b648f1e53b9da0bc3a413050 6960 mummer_3.23+dfsg-8_amd64.buildinfo bd87d75e2ed4921224b7ba20c1d2534c657d402e 670380 mummer_3.23+dfsg-8_amd64.deb Checksums-Sha256: 1289e77b307783eedaeb8ff29bf4f57d9d311ff575d851d722415f65dcabff49 3288200 mummer-dbgsym_3.23+dfsg-8_amd64.deb 514d06e7d01a4d49e48c8b00c455361ab50043a635b950a8f459e78b1e358336 1312988 mummer-doc_3.23+dfsg-8_all.deb a8727e3539dce5ea7b71e7d353a094ff68e0f7b6f7ee938b8481fa096d73b88f 6960 mummer_3.23+dfsg-8_amd64.buildinfo 9d6af57439f56c97c72a4f67660d7b90b3f7798d8116c2cbff1564cd0eaf8f61 670380 mummer_3.23+dfsg-8_amd64.deb Files: b6bdbf914c4392da9b27578f4ee82ec9 3288200 debug optional mummer-dbgsym_3.23+dfsg-8_amd64.deb d7f9ed86f80e22308b6143136694a29a 1312988 doc optional mummer-doc_3.23+dfsg-8_all.deb 342a234ea0986389f60df0ef3e51d18c 6960 science optional mummer_3.23+dfsg-8_amd64.buildinfo 53dfdd4d994233f32b557d0a2a1feed9 670380 science optional mummer_3.23+dfsg-8_amd64.deb removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/forky/amd64/mummer_3.23+dfsg-8.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/forky/amd64/mummer_3.23+dfsg-8.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/forky/amd64/mummer_3.23+dfsg-8.build1.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/forky/amd64/mummer_3.23+dfsg-8.build2.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/buildinfo/forky/amd64/mummer_3.23+dfsg-8_amd64.buildinfo' removed '/var/lib/jenkins/userContent/reproducible/debian/logdiffs/forky/amd64/mummer_3.23+dfsg-8.diff.gz' Diff of the two buildlogs: -- --- b1/build.log 2025-10-31 03:54:02.584789442 +0000 +++ b2/build.log 2025-10-31 04:03:58.041522215 +0000 @@ -1,8 +1,2550 @@ I: pbuilder: network access will be disabled during build -I: Current time: Thu Oct 30 15:50:43 -12 2025 -I: pbuilder-time-stamp: 1761882643 +I: Current time: Fri Oct 31 17:54:05 +14 2025 +I: pbuilder-time-stamp: 1761882845 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] +tar: ./build: time stamp 2026-11-29 07:50:53 is 34005406.84155432 s in the future +tar: ./dev/ptmx: time stamp 2026-11-29 07:46:28 is 34005141.841292649 s in the future +tar: ./dev/zero: time stamp 2026-11-29 07:46:28 is 34005141.84116542 s in the future +tar: ./dev/null: time stamp 2026-11-29 07:46:28 is 34005141.841121644 s in the future +tar: ./dev/console: time stamp 2026-11-29 07:46:28 is 34005141.841053721 s in the future +tar: ./dev/random: time stamp 2026-11-29 07:46:28 is 34005141.841013203 s in the future +tar: ./dev/full: time stamp 2026-11-29 07:46:28 is 34005141.840975063 s in the future +tar: ./dev/pts: time stamp 2026-11-29 07:46:28 is 34005141.840905138 s in the future +tar: ./dev/tty: time stamp 2026-11-29 07:46:28 is 34005141.840834978 s in the future +tar: ./dev/urandom: time stamp 2026-11-29 07:46:28 is 34005141.84079461 s in the future +tar: ./etc/terminfo: time stamp 2026-11-29 07:46:38 is 34005151.840448907 s in the future +tar: ./etc/opt: time stamp 2026-11-29 07:46:28 is 34005141.838365961 s in the future +tar: ./etc/security/opasswd: time stamp 2026-11-29 07:46:40 is 34005153.83798445 s in the future +tar: ./etc/security: time stamp 2026-11-29 07:46:40 is 34005153.837648685 s in the future +tar: ./etc/shadow: time stamp 2026-11-29 07:51:36 is 34005449.837448449 s in the future +tar: ./etc/cron.daily: time stamp 2026-11-30 23:31:29 is 34148242.837205153 s in the future +tar: ./etc/apt/apt.conf.d/80proxy: time stamp 2026-11-29 07:52:40 is 34005513.835806173 s in the future +tar: ./etc/apt/apt.conf.d/15pbuilder: time stamp 2026-11-29 07:50:53 is 34005406.835735093 s in the future +tar: ./etc/apt/apt.conf.d: time stamp 2026-11-30 23:31:29 is 34148242.835617071 s in the future +tar: ./etc/apt/sources.list: time stamp 2026-11-29 07:52:40 is 34005513.835499158 s in the future +tar: ./etc/apt/trusted.gpg.d: time stamp 2026-11-29 07:50:07 is 34005360.83425385 s in the future +tar: ./etc/apt: time stamp 2026-11-29 07:52:40 is 34005513.834163775 s in the future +tar: ./etc/fstab: time stamp 2026-11-29 07:46:28 is 34005141.834108453 s in the future +tar: ./etc/update-motd.d: time stamp 2026-11-29 07:46:39 is 34005152.833180097 s in the future +tar: ./etc/ld.so.conf.d: time stamp 2026-11-29 07:52:00 is 34005473.832841763 s in the future +tar: ./etc/gshadow: time stamp 2026-11-29 07:51:36 is 34005449.832677827 s in the future +tar: ./etc/shells: time stamp 2026-11-29 07:46:39 is 34005152.832598196 s in the future +tar: ./etc/default: time stamp 2026-11-29 07:51:35 is 34005448.832227858 s in the future +tar: ./etc/group: time stamp 2026-11-29 07:51:36 is 34005449.832127022 s in the future +tar: ./etc/ld.so.cache: time stamp 2026-12-02 23:31:27 is 34321040.831701685 s in the future +tar: ./etc/.pwd.lock: time stamp 2026-11-29 07:51:36 is 34005449.831575654 s in the future +tar: ./etc/skel: time stamp 2026-11-29 07:46:39 is 34005152.83134234 s in the future +tar: ./etc/group-: time stamp 2026-11-29 07:46:28 is 34005141.831226033 s in the future +tar: ./etc/subuid: time stamp 2026-11-29 07:46:28 is 34005141.831177956 s in the future +tar: ./etc/logrotate.d: time stamp 2026-11-30 23:31:29 is 34148242.830188666 s in the future +tar: ./etc/pam.d/common-session: time stamp 2026-11-29 07:46:40 is 34005153.830032957 s in the future +tar: ./etc/pam.d/common-password: time stamp 2026-11-29 07:46:40 is 34005153.829934611 s in the future +tar: ./etc/pam.d/common-account: time stamp 2026-11-29 07:46:40 is 34005153.829814256 s in the future +tar: ./etc/pam.d/common-session-noninteractive: time stamp 2026-11-29 07:46:40 is 34005153.829714593 s in the future +tar: ./etc/pam.d/common-auth: time stamp 2026-11-29 07:46:40 is 34005153.829619431 s in the future +tar: ./etc/pam.d: time stamp 2026-12-02 20:29:29 is 34310122.82934106 s in the future +tar: ./etc/subgid: time stamp 2026-11-29 07:46:28 is 34005141.829245289 s in the future +tar: ./etc/passwd-: time stamp 2026-11-29 07:46:28 is 34005141.829152929 s in the future +tar: ./etc/environment: time stamp 2026-11-29 07:46:40 is 34005153.828825482 s in the future +tar: ./etc/perl/Net: time stamp 2026-11-29 07:50:24 is 34005377.828649447 s in the future +tar: ./etc/perl: time stamp 2026-11-29 07:50:02 is 34005355.828626282 s in the future +tar: ./etc/selinux: time stamp 2026-11-29 07:51:27 is 34005440.828439637 s in the future +tar: ./etc/kernel: time stamp 2026-11-29 07:46:41 is 34005154.828312685 s in the future +tar: ./etc/passwd: time stamp 2026-11-29 07:51:36 is 34005449.828255971 s in the future +tar: ./etc/dpkg/origins/default: time stamp 2026-11-29 07:46:28 is 34005141.828062185 s in the future +tar: ./etc/dpkg/origins: time stamp 2026-11-29 07:46:39 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in the future +tar: ./usr/share/locale/ms/LC_TIME: time stamp 2026-11-29 07:46:31 is 34005138.320807108 s in the future +tar: ./usr/share/locale/bg/LC_TIME: time stamp 2026-11-29 07:46:31 is 34005138.320768211 s in the future +tar: ./usr/share/locale/bg: time stamp 2026-11-29 07:46:26 is 34005133.320746425 s in the future +tar: ./usr/share/locale/lg/LC_TIME: time stamp 2026-11-29 07:46:31 is 34005138.320724675 s in the future +tar: ./usr/share/locale/it/LC_TIME: time stamp 2026-11-29 07:46:31 is 34005138.320684024 s in the future +tar: ./usr/share/locale/it: time stamp 2026-11-29 07:46:26 is 34005133.32066051 s in the future +tar: ./usr/share/locale/ja/LC_TIME: time stamp 2026-11-29 07:46:31 is 34005138.320636444 s in the future +tar: ./usr/share/locale/ja: time stamp 2026-11-29 07:46:26 is 34005133.320613075 s in the future +tar: ./usr/share/locale/sk/LC_TIME: time stamp 2026-11-29 07:46:31 is 34005138.320588746 s in the future +tar: ./usr/share/locale/sk: time stamp 2026-11-29 07:46:26 is 34005133.320566505 s in the future +tar: ./usr/share/locale/gl/LC_TIME: time stamp 2026-11-29 07:46:31 is 34005138.320541132 s in the future +tar: ./usr/share/locale/gl: time stamp 2026-11-29 07:46:26 is 34005133.320518755 s in the future +tar: ./usr/share/locale/ka/LC_TIME: time stamp 2026-11-29 07:46:31 is 34005138.320483205 s in the future +tar: ./usr/share/locale/ka: time stamp 2026-11-29 07:46:26 is 34005133.320459676 s in the future +tar: ./usr/share/locale/ca/LC_TIME: time stamp 2026-11-29 07:46:31 is 34005138.320432665 s in the future +tar: ./usr/share/locale/ca: time stamp 2026-11-29 07:46:26 is 34005133.320401552 s in the future +tar: ./usr/share/locale/pl/LC_TIME: time stamp 2026-11-29 07:46:31 is 34005138.320374468 s in the future +tar: ./usr/share/locale/pl: time stamp 2026-11-29 07:46:26 is 34005133.320347627 s in the future +tar: ./usr/share/locale/ta/LC_TIME: time stamp 2026-11-29 07:46:31 is 34005138.320323597 s in the future +tar: ./usr/share/locale/zh_TW/LC_TIME: time stamp 2026-11-29 07:46:31 is 34005138.320282812 s in the future +tar: ./usr/share/locale/zh_TW: time stamp 2026-11-29 07:46:26 is 34005133.320259709 s in the future +tar: ./usr/share/locale/kk/LC_TIME: time stamp 2026-11-29 07:46:31 is 34005138.320235087 s in the future +tar: ./usr/share/locale/ia/LC_TIME: time stamp 2026-11-29 07:46:31 is 34005138.320193501 s in the future +tar: ./usr/share/locale/de/LC_TIME: time stamp 2026-11-29 07:46:31 is 34005138.320153074 s in the future +tar: ./usr/share/locale/de: time stamp 2026-11-29 07:46:26 is 34005133.320130855 s in the future +tar: ./usr/share/locale/ko/LC_TIME: time stamp 2026-11-29 07:46:31 is 34005138.320105246 s in the future +tar: ./usr/share/locale/ko: time stamp 2026-11-29 07:46:26 is 34005133.320082089 s in the future +tar: ./usr/share/locale/ro/LC_TIME: time stamp 2026-11-29 07:46:31 is 34005138.32005544 s in the future +tar: ./usr/share/locale/ro: time stamp 2026-11-29 07:46:26 is 34005133.320032236 s in the future +tar: ./usr/share/locale/lt/LC_TIME: time stamp 2026-11-29 07:46:31 is 34005138.320007117 s in the future +tar: ./usr/share/locale/lt: time stamp 2026-11-29 07:46:26 is 34005133.31998436 s in the future +tar: ./usr/share/locale/es/LC_TIME: time stamp 2026-11-29 07:46:31 is 34005138.319958312 s in the future +tar: ./usr/share/locale/es: time stamp 2026-11-29 07:46:26 is 34005133.319935421 s in the future +tar: ./usr/share/locale/be/LC_TIME: time stamp 2026-11-29 07:46:31 is 34005138.319912409 s in the future +tar: ./usr/share/locale/sv/LC_TIME: time stamp 2026-11-29 07:46:31 is 34005138.319870685 s in the future +tar: ./usr/share/locale/sv: time stamp 2026-11-29 07:46:26 is 34005133.319841144 s in the future +tar: ./usr/share/locale/hu/LC_TIME: time stamp 2026-11-29 07:46:31 is 34005138.319800268 s in the future +tar: ./usr/share/locale/hu: time stamp 2026-11-29 07:46:26 is 34005133.319774566 s in the future +tar: ./usr/share/locale/tr/LC_TIME: time stamp 2026-11-29 07:46:31 is 34005138.319748976 s in the future +tar: ./usr/share/locale/tr: time stamp 2026-11-29 07:46:26 is 34005133.319726499 s in the future +tar: ./usr/share/locale/nb/LC_TIME: time stamp 2026-11-29 07:46:31 is 34005138.319700576 s in the future +tar: ./usr/share/locale/nb: time stamp 2026-11-29 07:46:26 is 34005133.319680977 s in the future +tar: ./usr/share/locale/et/LC_TIME: time stamp 2026-11-29 07:46:31 is 34005138.319659166 s in the future +tar: ./usr/share/locale/et: time stamp 2026-11-29 07:46:26 is 34005133.319637345 s in the future +tar: ./usr/share/locale/zh_CN/LC_TIME: time stamp 2026-11-29 07:46:31 is 34005138.319611421 s in the future +tar: ./usr/share/locale/zh_CN: time stamp 2026-11-29 07:46:26 is 34005133.319588811 s in the future +tar: ./usr/share/locale/nl/LC_TIME: time stamp 2026-11-29 07:46:31 is 34005138.319563242 s in the future +tar: ./usr/share/locale/nl: time stamp 2026-11-29 07:46:26 is 34005133.319538668 s in the future +tar: ./usr/share/locale/sr/LC_TIME: time stamp 2026-11-29 07:46:31 is 34005138.319513264 s in the future +tar: ./usr/share/locale/sr: time stamp 2026-11-29 07:46:26 is 34005133.319490489 s in the future +tar: ./usr/share/locale/pt/LC_TIME: time stamp 2026-11-29 07:46:31 is 34005138.319465483 s in the future +tar: ./usr/share/locale/pt: time stamp 2026-11-29 07:46:26 is 34005133.319442741 s in the future +tar: ./usr/share/locale/uk/LC_TIME: time stamp 2026-11-29 07:46:31 is 34005138.31941808 s in the future +tar: ./usr/share/locale/uk: time stamp 2026-11-29 07:46:26 is 34005133.319395229 s in the future +tar: ./usr/share/locale/id/LC_TIME: time stamp 2026-11-29 07:46:31 is 34005138.319368846 s in the future +tar: ./usr/share/locale/id: time stamp 2026-11-29 07:46:26 is 34005133.319345381 s in the future +tar: ./usr/share/locale/fi/LC_TIME: time stamp 2026-11-29 07:46:31 is 34005138.319320158 s in the future +tar: ./usr/share/locale/fi: time stamp 2026-11-29 07:46:26 is 34005133.319297268 s in the future +tar: ./usr/share/locale/fr/LC_TIME: time stamp 2026-11-29 07:46:31 is 34005138.319272089 s in the future +tar: ./usr/share/locale/fr: time stamp 2026-11-29 07:46:26 is 34005133.319250013 s in the future +tar: ./usr/share/locale: time stamp 2026-11-29 07:51:38 is 34005445.319228216 s in the future +tar: ./usr/share/man/sl/man1: time stamp 2026-11-29 07:46:39 is 34005146.319201945 s in the future +tar: ./usr/share/man/cs/man8: time stamp 2026-11-29 07:52:01 is 34005468.319160635 s in the future +tar: ./usr/share/man/cs: time stamp 2026-11-29 07:51:34 is 34005441.319136218 s in the future +tar: ./usr/share/man/it/man1: time stamp 2026-11-29 07:51:39 is 34005446.319109163 s in the future +tar: ./usr/share/man/it/man8: time stamp 2026-11-30 23:31:29 is 34148236.319083081 s in the future +tar: ./usr/share/man/it: time stamp 2026-11-29 07:46:27 is 34005134.319061993 s in the future +tar: ./usr/share/man/ja/man1: time stamp 2026-11-29 07:51:34 is 34005441.319036693 s in the future +tar: ./usr/share/man/ja/man8: time stamp 2026-11-30 23:31:29 is 34148236.31901189 s in the future +tar: ./usr/share/man/ja: time stamp 2026-11-29 07:46:27 is 34005134.318991443 s in the future +tar: ./usr/share/man/gl/man8: time stamp 2026-11-29 07:52:01 is 34005468.318968305 s in the future +tar: ./usr/share/man/gl: time stamp 2026-11-29 07:51:39 is 34005446.318947675 s in the future +tar: ./usr/share/man/pl/man1: time stamp 2026-11-29 07:51:34 is 34005441.318923056 s in the future +tar: ./usr/share/man/pl/man8: time stamp 2026-11-30 23:31:29 is 34148236.318897736 s in the future +tar: ./usr/share/man/pl: time stamp 2026-11-29 07:46:27 is 34005134.318876105 s in the future +tar: ./usr/share/man/man1: time stamp 2026-12-02 23:31:24 is 34321031.318850546 s in the future +tar: ./usr/share/man/man8: time stamp 2026-12-02 20:29:29 is 34310116.318825672 s in the future +tar: ./usr/share/man/de/man1: time stamp 2026-11-30 23:31:29 is 34148236.318798467 s in the future +tar: ./usr/share/man/de/man8: time stamp 2026-11-30 23:31:29 is 34148236.3187739 s in the future +tar: ./usr/share/man/de: time stamp 2026-11-29 07:46:41 is 34005148.318750881 s in the future +tar: ./usr/share/man/es/man1: time stamp 2026-11-29 07:52:00 is 34005467.31872611 s in the future +tar: ./usr/share/man/es/man8: time stamp 2026-11-30 23:31:29 is 34148236.31870303 s in the future +tar: ./usr/share/man/es: time stamp 2026-11-29 07:46:27 is 34005134.318679415 s in the future +tar: ./usr/share/man/sv/man1: time stamp 2026-11-29 07:52:00 is 34005467.318654605 s in the future +tar: ./usr/share/man/sv: time stamp 2026-11-29 07:46:47 is 34005154.318631233 s in the future +tar: ./usr/share/man/man7: time stamp 2026-11-30 23:31:29 is 34148236.318606288 s in the future +tar: ./usr/share/man/fi/man8: time stamp 2026-11-29 07:52:01 is 34005468.318580383 s in the future +tar: ./usr/share/man/fi: time stamp 2026-11-29 07:51:39 is 34005446.318557951 s in the future +tar: ./usr/share/man/fr/man1: time stamp 2026-11-30 23:31:29 is 34148236.318532829 s in the future +tar: ./usr/share/man/fr/man8: time stamp 2026-11-30 23:31:29 is 34148236.318508032 s in the future +tar: ./usr/share/man/fr: time stamp 2026-11-29 07:46:41 is 34005148.318485867 s in the future +tar: ./usr/share/man: time stamp 2026-11-29 07:51:39 is 34005446.31846428 s in the future +tar: ./usr/share: time stamp 2026-11-29 07:51:42 is 34005449.318441754 s in the future +tar: ./usr: time stamp 2026-11-29 07:46:28 is 34005135.318419459 s in the future +tar: ./etc/systemd/system/timers.target.wants: time stamp 2026-11-29 07:50:27 is 34005374.318378537 s in the future +tar: ./etc/systemd/system: time stamp 2026-11-29 07:46:29 is 34005136.318354907 s in the future +tar: ./etc/alternatives: time stamp 2026-11-29 07:52:01 is 34005468.31831786 s in the future I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem @@ -36,53 +2578,85 @@ dpkg-source: info: applying gnuplot.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/1863848/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/2117936/tmp/hooks/D01_modify_environment starting +debug: Running on ionos15-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Oct 31 03:54 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/2117936/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/2117936/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' - DISTRIBUTION='forky' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.3.3(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' + DIRSTACK=() + DISTRIBUTION=forky + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='a5f9f4c6e301411d9925024a2e4889e0' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='1863848' - PS1='# ' - PS2='> ' + INVOCATION_ID=f13065feee6247c6a1a4cd1f92984d18 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=2117936 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Dw5QbLMR/pbuilderrc_W9nx --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Dw5QbLMR/b1 --logfile b1/build.log mummer_3.23+dfsg-8.dsc' - SUDO_GID='111' - SUDO_HOME='/var/lib/jenkins' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://46.16.76.132:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Dw5QbLMR/pbuilderrc_xEUn --distribution forky --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Dw5QbLMR/b2 --logfile b2/build.log mummer_3.23+dfsg-8.dsc' + SUDO_GID=111 + SUDO_HOME=/var/lib/jenkins + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://213.165.73.152:3128 I: uname -a - Linux ionos11-amd64 6.12.48+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.48-1 (2025-09-20) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.12.48+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.48-1 (2025-09-20) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/1863848/tmp/hooks/D02_print_environment finished +I: user script /srv/workspace/pbuilder/2117936/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -214,7 +2788,7 @@ Get: 88 http://deb.debian.org/debian forky/main amd64 texlive-luatex all 2025.20250927-3 [36.0 MB] Get: 89 http://deb.debian.org/debian forky/main amd64 texlive-latex-base all 2025.20250927-3 [1320 kB] Get: 90 http://deb.debian.org/debian forky/main amd64 texlive-latex-recommended all 2025.20250927-3 [8509 kB] -Fetched 128 MB in 5s (27.0 MB/s) +Fetched 128 MB in 1s (104 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19869 files and directories currently installed.) @@ -606,7 +3180,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/mummer-3.23+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../mummer_3.23+dfsg-8_source.changes +I: user script /srv/workspace/pbuilder/2117936/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for forky +I: user script /srv/workspace/pbuilder/2117936/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/mummer-3.23+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../mummer_3.23+dfsg-8_source.changes dpkg-buildpackage: info: source package mummer dpkg-buildpackage: info: source version 3.23+dfsg-8 dpkg-buildpackage: info: source distribution unstable @@ -616,7 +3194,7 @@ debian/rules clean dh clean dh_auto_clean - make -j40 clean + make -j42 clean make[1]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg' rm -f *~ core* cd /build/reproducible-path/mummer-3.23+dfsg/src/kurtz; make clean @@ -669,7 +3247,7 @@ FINAL_BIN_DIR=/usr/bin FINAL_AUX_BIN_DIR=/usr/lib/mummer \ FINAL_SCRIPT_DIR=/usr/share/perl5/ \ CFLAGS="-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc" CXXFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection" LDFLAGS="-Wl,-z,relro -Wl,-z,now" - make -j40 INSTALL="install --strip-program=true" BIN_DIR=/build/reproducible-path/mummer-3.23\+dfsg/debian/tmp/usr/bin AUX_BIN_DIR=/build/reproducible-path/mummer-3.23\+dfsg/debian/tmp/usr/lib/mummer FINAL_BIN_DIR=/usr/bin FINAL_AUX_BIN_DIR=/usr/lib/mummer FINAL_SCRIPT_DIR=/usr/share/perl5/ CFLAGS="-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc" CXXFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection" LDFLAGS="-Wl,-z,relro -Wl,-z,now" + make -j42 INSTALL="install --strip-program=true" BIN_DIR=/build/reproducible-path/mummer-3.23\+dfsg/debian/tmp/usr/bin AUX_BIN_DIR=/build/reproducible-path/mummer-3.23\+dfsg/debian/tmp/usr/lib/mummer FINAL_BIN_DIR=/usr/bin FINAL_AUX_BIN_DIR=/usr/lib/mummer FINAL_SCRIPT_DIR=/usr/share/perl5/ CFLAGS="-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc" CXXFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection" LDFLAGS="-Wl,-z,relro -Wl,-z,now" make[2]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg' cd /build/reproducible-path/mummer-3.23+dfsg/src/kurtz; make mummer cd /build/reproducible-path/mummer-3.23+dfsg/src/tigr; make CFLAGS="-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc" CXXFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection" LDFLAGS="-Wl,-z,relro -Wl,-z,now" all @@ -679,51 +3257,51 @@ make[3]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg/scripts' make[3]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg/src/tigr' /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 tigrinc.cc -c -o tigrinc.o -/usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 delta.cc -c -o delta.o -/usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 sw_align.cc -c -o sw_align.o -/usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 translate.cc -c -o translate.o +cp -a ../debian/sh-replacement-scripts/exact-tandems /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin make[4]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir' /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cleanMUMcand.o cleanMUMcand.c -/usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o clock.o clock.c -cp -a ../debian/sh-replacement-scripts/exact-tandems /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin -/usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mapfile.o mapfile.c /usr/bin/sed -e 's?__PERL_PATH?/usr/bin/perl?g' \ -e 's?__SCRIPT_DIR?/usr/share/perl5/?g' \ mapview.pl > /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/mapview -/usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o multiseq.o multiseq.c -/usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o procopt.o procopt.c +/usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 delta.cc -c -o delta.o +/usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 sw_align.cc -c -o sw_align.o +/usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 translate.cc -c -o translate.o /usr/bin/sed -e 's?__PERL_PATH?/usr/bin/perl?g' \ -e 's?__SCRIPT_DIR?/usr/share/perl5/?g' \ -e 's?__BIN_DIR?/usr/bin?g' \ mummerplot.pl > /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/mummerplot -/usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o safescpy.o safescpy.c +/usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o clock.o clock.c +/usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mapfile.o mapfile.c +chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/exact-tandems /usr/bin/sed -e 's?__PERL_PATH?/usr/bin/perl?g' \ -e 's?__SCRIPT_DIR?/usr/share/perl5/?g' \ -e 's?__AUX_BIN_DIR?/usr/lib/mummer?g' \ -e 's?__BIN_DIR?/usr/bin?g' \ nucmer.pl > /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/nucmer +chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/mummerplot +/usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o multiseq.o multiseq.c +/usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o procopt.o procopt.c +chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/mapview +/usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o safescpy.o safescpy.c /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o seterror.o seterror.c -chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/exact-tandems /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o space.o space.c /usr/bin/sed -e 's?__PERL_PATH?/usr/bin/perl?g' \ -e 's?__SCRIPT_DIR?/usr/share/perl5/?g' \ -e 's?__AUX_BIN_DIR?/usr/lib/mummer?g' \ -e 's?__BIN_DIR?/usr/bin?g' \ promer.pl > /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/promer -chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/mapview -chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/mummerplot cp -a ../debian/sh-replacement-scripts/run-mummer1 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin cp -a ../debian/sh-replacement-scripts/run-mummer3 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin -chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/nucmer +chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/run-mummer1 /usr/bin/sed -e 's?__PERL_PATH?/usr/bin/perl?g' \ nucmer2xfig.pl > /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/nucmer2xfig +chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/nucmer +chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/promer +chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/run-mummer3 /usr/bin/sed -e 's?__PERL_PATH?/usr/bin/perl?g' \ -e 's?__SCRIPT_DIR?/usr/share/perl5/?g' \ -e 's?__BIN_DIR?/usr/bin?g' \ dnadiff.pl > /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/dnadiff -chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/run-mummer1 -chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/promer -chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/run-mummer3 chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/nucmer2xfig chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/dnadiff make[3]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg/scripts' @@ -783,10 +3361,6 @@ /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -I../streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o findmumcand.o findmumcand.c /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -I../streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o findmaxmat.o findmaxmat.c /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -I../streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o procmaxmat.o procmaxmat.c -/usr/bin/gcc -Wl,-z,relro -Wl,-z,now maxmat3.o maxmatopt.o maxmatinp.o findmumcand.o findmaxmat.o procmaxmat.o ../streesrc/libstree.a ../libbasedir/libbase.a \ --o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/mummer; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/mummer -make[4]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/mm3src' -make[3]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg/src/kurtz' /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now annotate.cc tigrinc.o -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/annotate; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/annotate /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now combineMUMs.cc tigrinc.o -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/combineMUMs; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/combineMUMs /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now gaps.cc tigrinc.o -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/gaps; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/gaps @@ -796,6 +3370,10 @@ /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now prenuc.cc tigrinc.o -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/lib/mummer/prenuc; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/lib/mummer/prenuc /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now prepro.cc tigrinc.o translate.o -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/lib/mummer/prepro; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/lib/mummer/prepro /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now repeat-match.cc tigrinc.o -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/repeat-match; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/repeat-match +/usr/bin/gcc -Wl,-z,relro -Wl,-z,now maxmat3.o maxmatopt.o maxmatinp.o findmumcand.o findmaxmat.o procmaxmat.o ../streesrc/libstree.a ../libbasedir/libbase.a \ +-o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/mummer; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/mummer +make[4]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/mm3src' +make[3]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg/src/kurtz' combineMUMs.cc:26:38: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 26 | #define DEFAULT_ERROR_FILE_NAME "witherrors.gaps" | ^~~~~~~~~~~~~~~~~ @@ -808,6 +3386,10 @@ combineMUMs.cc:145:22: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 145 | char * Ref_Suffix = "Ref"; | ^~~~~ +combineMUMs.cc: In function 'int Read_String(FILE*, char**, long int*, char*)': +combineMUMs.cc:1481:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 1481 | fgets (Line, MAX_LINE, fp); + | ~~~~~~^~~~~~~~~~~~~~~~~~~~ mgaps.cc: In function 'int Process_Cluster(Match_t*, int, char*)': mgaps.cc:533:20: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 533 | label = "#\n"; @@ -816,10 +3398,6 @@ mgaps.cc:620:19: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 620 | label = "#\n"; | ^~~~~ -combineMUMs.cc: In function 'int Read_String(FILE*, char**, long int*, char*)': -combineMUMs.cc:1481:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 1481 | fgets (Line, MAX_LINE, fp); - | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now delta-filter.cc tigrinc.o delta.o -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/delta-filter; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/delta-filter /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now show-aligns.cc tigrinc.o translate.o delta.o -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/show-aligns; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/show-aligns /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now show-coords.cc tigrinc.o delta.o -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/show-coords; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/show-coords @@ -828,31 +3406,6 @@ /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now show-diff.cc tigrinc.o delta.o -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/show-diff; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/show-diff /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now delta2blocks.cc tigrinc.o translate.o delta.o -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/delta2blocks; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/delta2blocks /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now delta2maf.cc tigrinc.o translate.o delta.o -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/delta2maf; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/delta2maf -delta2blocks.cc: In function 'void printAlignments(std::vector, char*, char*, char*, char*)': -delta2blocks.cc:408:23: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long int' [-Wformat=] - 408 | printf ("%s %s %d %d %d %d ",IdR,IdQ, Ap->sR,Ap->eR,Ap->sQ,Ap->eQ); - | ~^ ~~~~~~ - | | | - | int long int - | %ld -delta2blocks.cc:408:26: warning: format '%d' expects argument of type 'int', but argument 5 has type 'long int' [-Wformat=] - 408 | printf ("%s %s %d %d %d %d ",IdR,IdQ, Ap->sR,Ap->eR,Ap->sQ,Ap->eQ); - | ~^ ~~~~~~ - | | | - | int long int - | %ld -delta2blocks.cc:408:29: warning: format '%d' expects argument of type 'int', but argument 6 has type 'long int' [-Wformat=] - 408 | printf ("%s %s %d %d %d %d ",IdR,IdQ, Ap->sR,Ap->eR,Ap->sQ,Ap->eQ); - | ~^ ~~~~~~ - | | | - | int long int - | %ld -delta2blocks.cc:408:32: warning: format '%d' expects argument of type 'int', but argument 7 has type 'long int' [-Wformat=] - 408 | printf ("%s %s %d %d %d %d ",IdR,IdQ, Ap->sR,Ap->eR,Ap->sQ,Ap->eQ); - | ~^ ~~~~~~ - | | | - | int long int - | %ld delta2maf.cc: In function 'void printAlignments(std::vector, char*, char*, std::map, char*>&)': delta2maf.cc:547:24: warning: format '%d' expects argument of type 'int', but argument 2 has type 'long int' [-Wformat=] 547 | printf("a score=%d\n",abs(Ap->eR - Ap->sR)); @@ -956,16 +3509,6 @@ | | | | | char (*)[(Screen_Width + 1)] | char* -show-coords.cc: In function 'void printBtab(std::vector)': -show-coords.cc:799:12: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] - 799 | type = "NUCMER"; - | ^~~~~~~~ -show-coords.cc:801:12: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] - 801 | type = "PROMER"; - | ^~~~~~~~ -show-coords.cc:803:12: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] - 803 | type = "NULL"; - | ^~~~~~ delta2maf.cc:710:30: warning: format '%s' expects argument of type 'char*', but argument 2 has type 'char (*)[(Screen_Width + 1)]' [-Wformat=] 710 | printf("%s", &Buff2); | ~^ ~~~~~~ @@ -990,6 +3533,41 @@ | | | | | char (*)[(Screen_Width + 1)] | char* +show-coords.cc: In function 'void printBtab(std::vector)': +show-coords.cc:799:12: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] + 799 | type = "NUCMER"; + | ^~~~~~~~ +show-coords.cc:801:12: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] + 801 | type = "PROMER"; + | ^~~~~~~~ +show-coords.cc:803:12: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] + 803 | type = "NULL"; + | ^~~~~~ +delta2blocks.cc: In function 'void printAlignments(std::vector, char*, char*, char*, char*)': +delta2blocks.cc:408:23: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long int' [-Wformat=] + 408 | printf ("%s %s %d %d %d %d ",IdR,IdQ, Ap->sR,Ap->eR,Ap->sQ,Ap->eQ); + | ~^ ~~~~~~ + | | | + | int long int + | %ld +delta2blocks.cc:408:26: warning: format '%d' expects argument of type 'int', but argument 5 has type 'long int' [-Wformat=] + 408 | printf ("%s %s %d %d %d %d ",IdR,IdQ, Ap->sR,Ap->eR,Ap->sQ,Ap->eQ); + | ~^ ~~~~~~ + | | | + | int long int + | %ld +delta2blocks.cc:408:29: warning: format '%d' expects argument of type 'int', but argument 6 has type 'long int' [-Wformat=] + 408 | printf ("%s %s %d %d %d %d ",IdR,IdQ, Ap->sR,Ap->eR,Ap->sQ,Ap->eQ); + | ~^ ~~~~~~ + | | | + | int long int + | %ld +delta2blocks.cc:408:32: warning: format '%d' expects argument of type 'int', but argument 7 has type 'long int' [-Wformat=] + 408 | printf ("%s %s %d %d %d %d ",IdR,IdQ, Ap->sR,Ap->eR,Ap->sQ,Ap->eQ); + | ~^ ~~~~~~ + | | | + | int long int + | %ld make[3]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg/src/tigr' make[2]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg' /usr/bin/make -C docs @@ -1187,7 +3765,7 @@ make[2]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg/docs' make[1]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg' dh_auto_test - make -j40 check + make -j42 check make[1]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg' check complete make[1]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg' @@ -1223,8 +3801,8 @@ dh_gencontrol dh_md5sums dh_builddeb -dpkg-deb: building package 'mummer-dbgsym' in '../mummer-dbgsym_3.23+dfsg-8_amd64.deb'. dpkg-deb: building package 'mummer' in '../mummer_3.23+dfsg-8_amd64.deb'. +dpkg-deb: building package 'mummer-dbgsym' in '../mummer-dbgsym_3.23+dfsg-8_amd64.deb'. dpkg-deb: building package 'mummer-doc' in '../mummer-doc_3.23+dfsg-8_all.deb'. dpkg-genbuildinfo --build=binary -O../mummer_3.23+dfsg-8_amd64.buildinfo dpkg-genchanges --build=binary -O../mummer_3.23+dfsg-8_amd64.changes @@ -1233,12 +3811,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/2117936/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/2117936/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/1863848 and its subdirectories -I: Current time: Thu Oct 30 15:54:02 -12 2025 -I: pbuilder-time-stamp: 1761882842 +I: removing directory /srv/workspace/pbuilder/2117936 and its subdirectories +I: Current time: Fri Oct 31 18:03:56 +14 2025 +I: pbuilder-time-stamp: 1761883436 Compressing the 2nd log... /var/lib/jenkins/userContent/reproducible/debian/logdiffs/forky/amd64/mummer_3.23+dfsg-8.diff: 88.4% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/forky/amd64/mummer_3.23+dfsg-8.diff.gz b2/build.log: 87.9% -- replaced with stdout Compressing the 1st log... b1/build.log: 86.3% -- replaced with stdout Fri Oct 31 04:03:59 UTC 2025 I: diffoscope 306 will be used to compare the two builds: ++ date -u +%s + DIFFOSCOPE_STAMP=/var/log/reproducible-builds/diffoscope_stamp_mummer_forky_amd64_1761883439 + touch /var/log/reproducible-builds/diffoscope_stamp_mummer_forky_amd64_1761883439 + RESULT=0 + systemd-run '--description=diffoscope on mummer/3.23+dfsg-8 in forky/amd64' --slice=rb-build-diffoscope.slice -u rb-diffoscope-amd64_7-77427 '--property=SuccessExitStatus=1 124' --user --send-sighup --pipe --wait -E TMPDIR timeout 155m nice schroot --directory /srv/reproducible-results/rbuild-debian/r-b-build.Dw5QbLMR --run-session -c jenkins-reproducible-forky-diffoscope-1f8eac4e-39a3-45fc-9085-a906db2a92ad -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian/r-b-build.Dw5QbLMR/dbd-tmp-d7fgln6 ; timeout 150m diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.Dw5QbLMR/mummer_3.23+dfsg-8.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.Dw5QbLMR/mummer_3.23+dfsg-8.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.Dw5QbLMR/mummer_3.23+dfsg-8.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.Dw5QbLMR/b1/mummer_3.23+dfsg-8_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.Dw5QbLMR/b2/mummer_3.23+dfsg-8_amd64.changes' + false + set +x Running as unit: rb-diffoscope-amd64_7-77427.service; invocation ID: 7eb28d593ff24a82944c87cb6c5c3cc5 # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.Dw5QbLMR/mummer_3.23+dfsg-8.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.Dw5QbLMR/mummer_3.23+dfsg-8.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.Dw5QbLMR/mummer_3.23+dfsg-8.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.Dw5QbLMR/b1/mummer_3.23+dfsg-8_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.Dw5QbLMR/b2/mummer_3.23+dfsg-8_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited, status=0/SUCCESS Service runtime: 222ms CPU time consumed: 188ms Memory peak: 17.2M (swap: 0B) _ __ ___ _ _ _ __ ___ _ __ ___ ___ _ __ | '_ ` _ \| | | | '_ ` _ \| '_ ` _ \ / _ \ '__| | | | | | | |_| | | | | | | | | | | | __/ | |_| |_| |_|\__,_|_| |_| |_|_| |_| |_|\___|_| Fri Oct 31 04:03:59 UTC 2025 I: diffoscope 306 found no differences in the changes files, and a .buildinfo file also exists. Fri Oct 31 04:03:59 UTC 2025 I: mummer from forky built successfully and reproducibly on amd64. INSERT 0 1 INSERT 0 1 DELETE 1 [2025-10-31 04:04:00] INFO: Starting at 2025-10-31 04:04:00.091357 [2025-10-31 04:04:00] INFO: Generating the pages of 1 package(s) [2025-10-31 04:04:00] CRITICAL: https://tests.reproducible-builds.org/debian/forky/amd64/mummer didn't produce a buildlog, even though it has been built. [2025-10-31 04:04:00] INFO: Finished at 2025-10-31 04:04:00.381338, took: 0:00:00.289985 Fri Oct 31 04:04:00 UTC 2025 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/forky/amd64/mummer.html Fri Oct 31 04:04:00 UTC 2025 I: Removing signed mummer_3.23+dfsg-8_amd64.buildinfo.asc files: removed './b1/mummer_3.23+dfsg-8_amd64.buildinfo.asc' removed './b2/mummer_3.23+dfsg-8_amd64.buildinfo.asc' 1761883440 amd64 forky mummer Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/forky/amd64/mummer_3.23+dfsg-8.rbuild.log: 84.1% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/forky/amd64/mummer_3.23+dfsg-8.rbuild.log.gz [2025-10-31 04:04:00] INFO: Starting at 2025-10-31 04:04:00.729558 [2025-10-31 04:04:00] INFO: Generating the pages of 1 package(s) [2025-10-31 04:04:01] INFO: Finished at 2025-10-31 04:04:01.018526, took: 0:00:00.288973 All cleanup done. Fri Oct 31 04:04:01 UTC 2025 - total duration: 0h 13m 20s. Fri Oct 31 04:04:01 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-4an6Ysed, removing. Finished with result: success Main processes terminated with: code=exited, status=0/SUCCESS Service runtime: 13min 22.008s CPU time consumed: 3.430s Memory peak: 51.4M (swap: 0B)