Running as unit: rb-build-arm64_1-104102.service; invocation ID: ae79eae9b98249f7b563f0b2d66b402a ==================================================================================== Fri Oct 31 19:06:14 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_arm64_1) on jenkins, called using "codethink03-arm64 codethink04-arm64" as arguments. Fri Oct 31 19:06:14 UTC 2025 - actually running "reproducible_build.sh" (md5sum bcb6fe1b50cf4e8eedacd0971a9eb63f) as "/tmp/jenkins-script-ppLif6cN" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Fri Oct 31 19:06:14 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink03-arm64.debian.net is marked as down. Fri Oct 31 19:06:14 UTC 2025 - checking via ssh if codethink03-arm64.debian.net is up. removed '/tmp/read-only-fs-test-desJs8' Fri Oct 31 19:06:14 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink04-arm64.debian.net is marked as down. Fri Oct 31 19:06:14 UTC 2025 - checking via ssh if codethink04-arm64.debian.net is up. removed '/tmp/read-only-fs-test-SJ1fqs' ok, let's check if skewer is building anywhere yet… ok, skewer is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of skewer in forky on arm64 on jenkins now. 1st build will be done on codethink03-arm64.debian.net. 2nd build will be done on codethink04-arm64.debian.net. ============================================================================= Fri Oct 31 19:06:29 UTC 2025 I: starting to build skewer/forky/arm64 on jenkins on '2025-10-31 19:06' Fri Oct 31 19:06:29 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_1/104102/console.log 1761937589 arm64 forky skewer Fri Oct 31 19:06:29 UTC 2025 I: Downloading source for forky/skewer=0.2.2-6 --2025-10-31 19:06:30-- http://deb.debian.org/debian/pool/main/s/skewer/skewer_0.2.2-6.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 1941 (1.9K) [text/prs.lines.tag] Saving to: ‘skewer_0.2.2-6.dsc’ 0K . 100% 210M=0s 2025-10-31 19:06:30 (210 MB/s) - ‘skewer_0.2.2-6.dsc’ saved [1941/1941] --2025-10-31 19:06:30-- http://deb.debian.org/debian/pool/main/s/skewer/skewer_0.2.2-6.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 1941 (1.9K) [text/prs.lines.tag] Saving to: ‘skewer_0.2.2-6.dsc’ 0K . 100% 210M=0s 2025-10-31 19:06:30 (210 MB/s) - ‘skewer_0.2.2-6.dsc’ saved [1941/1941] Fri Oct 31 19:06:30 UTC 2025 I: skewer_0.2.2-6.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: skewer Binary: skewer Architecture: any Version: 0.2.2-6 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller Homepage: https://github.com/relipmoc/skewer Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/skewer Vcs-Git: https://salsa.debian.org/med-team/skewer.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13) Package-List: skewer deb science optional arch=any Checksums-Sha1: 110d99ccee1e420c06b0848a9281a5b509aa32bd 36382 skewer_0.2.2.orig.tar.gz f6b1939c59dd2009a1414218b51577e654648973 21760 skewer_0.2.2-6.debian.tar.xz Checksums-Sha256: bc37afccdf55de047502b87fe56d537cdf78674ccaec1a401b2d29552d6b2dfc 36382 skewer_0.2.2.orig.tar.gz 7f803eb0fcf8e686dba035f1a4650671dc7491e54f34a37166f523dd72f85f54 21760 skewer_0.2.2-6.debian.tar.xz Files: 082f62f7e1ff27cd1b7e66269d46653e 36382 skewer_0.2.2.orig.tar.gz 758e814eca486d235c243ff9e0825a8e 21760 skewer_0.2.2-6.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJGBAEBCgAwFiEEPpmlJvXcwMu/HO6mALrnSzQzafEFAmF+q5QSHG5pbGVzaEBk ZWJpYW4ub3JnAAoJEAC650s0M2nxabYQAImxcUKepU7j25K1tLT2ECazMAxMz1ZH Herdl6/89IBfVfIyiqlD2U9wh66L28hukmRZP7gwZ0fivgivTZDD25uSDvhuaETU iOHncD5vN8bNLZTVMGW6env4m6j+jAujLNHgtGJhPC7dNazbfHWySBNmFkAgPimh MyAUhQf+8YtP+0XIwlW7Hfb+GrWczr7wq7cqFTxU4n26KDWR+3k2cpan4WwCnEKP ygHUut80G65cR1VuQM9uKj2QDdUyni9JbtwRlUz3fF+MUFMrIn7tfE6bnaBdkdEK 8VxGGHwYotD68yUBMO/qxgF9Q2/621bzKPmG/BGojVNaLf6Ui0KQtkQhym4gZwfK raiMqCOwViLMneaXTui+DISpahADTk1VOvVIynf3fUG6Dl2kGmE299kN8SjEknzF LTo21yOjam7EbzoqY2wLPEUgCblRFog5xvn04/fnddmLw5lzk179lrFGmTRWNqk2 TPJ5dl+CwOTGZK3c93PcD57++z3CQygh/h6MTQhAWUoDq9aZgX/74+GdCzT7rV5I jhBVE91dUI3rajDhU4h9iBbTCcf+iRQtTHFVELmzg3gKIdsuyOQ08oo4D7gkFF9a 9XFDq8mm9HT2GaLwZa4Rl24xVDOkWUUAXjRMO1pApKr7joUHSD02s9V6sBe+e92o 3gk3/rzgWk56 =vj6E -----END PGP SIGNATURE----- Fri Oct 31 19:06:30 UTC 2025 I: Checking whether the package is not for us Fri Oct 31 19:06:30 UTC 2025 I: Starting 1st build on remote node codethink03-arm64.debian.net. Fri Oct 31 19:06:30 UTC 2025 I: Preparing to do remote build '1' on codethink03-arm64.debian.net. Fri Oct 31 19:06:30 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink03-arm64.debian.net is marked as down. Fri Oct 31 19:06:30 UTC 2025 - checking via ssh if codethink03-arm64.debian.net is up. removed '/tmp/read-only-fs-test-lu4mbk' ==================================================================================== Fri Dec 4 01:29:31 UTC 2026 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on codethink03-arm64, called using "1 skewer forky /srv/reproducible-results/rbuild-debian/r-b-build.qMCbr7qe 0.2.2-6" as arguments. Fri Dec 4 01:29:31 UTC 2026 - actually running "reproducible_build.sh" (md5sum bcb6fe1b50cf4e8eedacd0971a9eb63f) as "/tmp/jenkins-script-ZqCgcieR" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Fri Dec 4 01:29:31 UTC 2026 I: Downloading source for forky/skewer=0.2.2-6 Reading package lists... NOTICE: 'skewer' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/skewer.git Please use: git clone https://salsa.debian.org/med-team/skewer.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 60.1 kB of source archives. Get:1 http://deb.debian.org/debian forky/main skewer 0.2.2-6 (dsc) [1941 B] Get:2 http://deb.debian.org/debian forky/main skewer 0.2.2-6 (tar) [36.4 kB] Get:3 http://deb.debian.org/debian forky/main skewer 0.2.2-6 (diff) [21.8 kB] Fetched 60.1 kB in 0s (1039 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'skewer' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/skewer.git Please use: git clone https://salsa.debian.org/med-team/skewer.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 60.1 kB of source archives. Get:1 http://deb.debian.org/debian forky/main skewer 0.2.2-6 (dsc) [1941 B] Get:2 http://deb.debian.org/debian forky/main skewer 0.2.2-6 (tar) [36.4 kB] Get:3 http://deb.debian.org/debian forky/main skewer 0.2.2-6 (diff) [21.8 kB] Fetched 60.1 kB in 0s (1039 kB/s) Download complete and in download only mode ============================================================================= Building skewer in forky on arm64 on codethink03-arm64 now. Date: Fri Dec 4 01:29:31 GMT 2026 Date UTC: Fri Dec 4 01:29:31 UTC 2026 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Thu Dec 3 13:29:31 -12 2026 I: pbuilder-time-stamp: 1796347771 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [skewer_0.2.2-6.dsc] I: copying [./skewer_0.2.2.orig.tar.gz] I: copying [./skewer_0.2.2-6.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./skewer_0.2.2-6.dsc: no acceptable signature found dpkg-source: info: extracting skewer in skewer-0.2.2 dpkg-source: info: unpacking skewer_0.2.2.orig.tar.gz dpkg-source: info: unpacking skewer_0.2.2-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fixMakefile.patch dpkg-source: info: applying gcc11.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/393941/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='forky' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='28974a4c0aab4150b8d61005ae26c595' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='393941' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.qMCbr7qe/pbuilderrc_TpRK --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.qMCbr7qe/b1 --logfile b1/build.log skewer_0.2.2-6.dsc' SUDO_GID='109' SUDO_HOME='/var/lib/jenkins' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink03-arm64 6.12.48+deb13-cloud-arm64 #1 SMP Debian 6.12.48-1 (2025-09-20) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/393941/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19971 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2-16{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 29 newly installed, 0 to remove and 0 not upgraded. Need to get 11.0 MB of archives. After unpacking 45.0 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian forky/main arm64 sensible-utils all 0.0.26 [27.0 kB] Get: 2 http://deb.debian.org/debian forky/main arm64 libmagic-mgc arm64 1:5.46-5 [338 kB] Get: 3 http://deb.debian.org/debian forky/main arm64 libmagic1t64 arm64 1:5.46-5 [103 kB] Get: 4 http://deb.debian.org/debian forky/main arm64 file arm64 1:5.46-5 [43.7 kB] Get: 5 http://deb.debian.org/debian forky/main arm64 gettext-base arm64 0.23.1-2+b1 [241 kB] Get: 6 http://deb.debian.org/debian forky/main arm64 libuchardet0 arm64 0.0.8-2 [69.0 kB] Get: 7 http://deb.debian.org/debian forky/main arm64 groff-base arm64 1.23.0-9 [1130 kB] Get: 8 http://deb.debian.org/debian forky/main arm64 bsdextrautils arm64 2.41.2-4 [97.3 kB] Get: 9 http://deb.debian.org/debian forky/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 10 http://deb.debian.org/debian forky/main arm64 man-db arm64 2.13.1-1 [1453 kB] Get: 11 http://deb.debian.org/debian forky/main arm64 m4 arm64 1.4.20-2 [315 kB] Get: 12 http://deb.debian.org/debian forky/main arm64 autoconf all 2.72-3.1 [494 kB] Get: 13 http://deb.debian.org/debian forky/main arm64 autotools-dev all 20240727.1 [60.2 kB] Get: 14 http://deb.debian.org/debian forky/main arm64 automake all 1:1.18.1-2 [877 kB] Get: 15 http://deb.debian.org/debian forky/main arm64 autopoint all 0.23.1-2 [770 kB] Get: 16 http://deb.debian.org/debian forky/main arm64 libdebhelper-perl all 13.28 [92.4 kB] Get: 17 http://deb.debian.org/debian forky/main arm64 libtool all 2.5.4-7 [540 kB] Get: 18 http://deb.debian.org/debian forky/main arm64 dh-autoreconf all 21 [12.2 kB] Get: 19 http://deb.debian.org/debian forky/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian forky/main arm64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 21 http://deb.debian.org/debian forky/main arm64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 22 http://deb.debian.org/debian forky/main arm64 libelf1t64 arm64 0.193-3 [189 kB] Get: 23 http://deb.debian.org/debian forky/main arm64 dwz arm64 0.16-2 [100 kB] Get: 24 http://deb.debian.org/debian forky/main arm64 libunistring5 arm64 1.3-2 [453 kB] Get: 25 http://deb.debian.org/debian forky/main arm64 libxml2-16 arm64 2.14.6+dfsg-0.1 [601 kB] Get: 26 http://deb.debian.org/debian forky/main arm64 gettext arm64 0.23.1-2+b1 [1612 kB] Get: 27 http://deb.debian.org/debian forky/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 28 http://deb.debian.org/debian forky/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian forky/main arm64 debhelper all 13.28 [941 kB] Fetched 11.0 MB in 0s (81.5 MB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19971 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.46-5_arm64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../02-libmagic1t64_1%3a5.46-5_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.46-5_arm64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.23.1-2+b1_arm64.deb ... Unpacking gettext-base (0.23.1-2+b1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../05-libuchardet0_0.0.8-2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-2) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-9_arm64.deb ... Unpacking groff-base (1.23.0-9) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.41.2-4_arm64.deb ... Unpacking bsdextrautils (2.41.2-4) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../08-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.1-1_arm64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.20-2_arm64.deb ... Unpacking m4 (1.4.20-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.18.1-2_all.deb ... Unpacking automake (1:1.18.1-2) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.23.1-2_all.deb ... Unpacking autopoint (0.23.1-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.28_all.deb ... Unpacking libdebhelper-perl (13.28) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.5.4-7_all.deb ... Unpacking libtool (2.5.4-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_21_all.deb ... Unpacking dh-autoreconf (21) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../19-libfile-stripnondeterminism-perl_1.15.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.15.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../20-dh-strip-nondeterminism_1.15.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.15.0-1) ... Selecting previously unselected package libelf1t64:arm64. Preparing to unpack .../21-libelf1t64_0.193-3_arm64.deb ... Unpacking libelf1t64:arm64 (0.193-3) ... Selecting previously unselected package dwz. Preparing to unpack .../22-dwz_0.16-2_arm64.deb ... Unpacking dwz (0.16-2) ... Selecting previously unselected package libunistring5:arm64. Preparing to unpack .../23-libunistring5_1.3-2_arm64.deb ... Unpacking libunistring5:arm64 (1.3-2) ... Selecting previously unselected package libxml2-16:arm64. Preparing to unpack .../24-libxml2-16_2.14.6+dfsg-0.1_arm64.deb ... Unpacking libxml2-16:arm64 (2.14.6+dfsg-0.1) ... Selecting previously unselected package gettext. Preparing to unpack .../25-gettext_0.23.1-2+b1_arm64.deb ... Unpacking gettext (0.23.1-2+b1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../26-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../27-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../28-debhelper_13.28_all.deb ... Unpacking debhelper (13.28) ... Setting up libpipeline1:arm64 (1.5.8-1) ... Setting up bsdextrautils (2.41.2-4) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libxml2-16:arm64 (2.14.6+dfsg-0.1) ... Setting up libdebhelper-perl (13.28) ... Setting up libmagic1t64:arm64 (1:5.46-5) ... Setting up gettext-base (0.23.1-2+b1) ... Setting up m4 (1.4.20-2) ... Setting up file (1:5.46-5) ... Setting up libelf1t64:arm64 (0.193-3) ... Setting up autotools-dev (20240727.1) ... Setting up libunistring5:arm64 (1.3-2) ... Setting up autopoint (0.23.1-2) ... Setting up autoconf (2.72-3.1) ... Setting up dwz (0.16-2) ... Setting up sensible-utils (0.0.26) ... Setting up libuchardet0:arm64 (0.0.8-2) ... Setting up automake (1:1.18.1-2) ... update-alternatives: using /usr/bin/automake-1.18 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up gettext (0.23.1-2+b1) ... Setting up libtool (2.5.4-7) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (21) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up groff-base (1.23.0-9) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.28) ... Processing triggers for libc-bin (2.41-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/skewer-0.2.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../skewer_0.2.2-6_source.changes dpkg-buildpackage: info: source package skewer dpkg-buildpackage: info: source version 0.2.2-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_auto_clean make -j12 clean make[1]: Entering directory '/build/reproducible-path/skewer-0.2.2' rm -rf src/main.o src/parameter.o src/matrix.o src/fastq.o skewer make[1]: Leaving directory '/build/reproducible-path/skewer-0.2.2' dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/skewer.substvars debian/files rm -fr -- debian/skewer/ debian/tmp/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \) debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure dh_auto_build make -j12 INSTALL="install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/skewer-0.2.2' g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/skewer-0.2.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O2 -c src/main.cpp -o src/main.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/skewer-0.2.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O2 -c src/parameter.cpp -o src/parameter.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/skewer-0.2.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O2 -c src/matrix.cpp -o src/matrix.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/skewer-0.2.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O2 -c src/fastq.cpp -o src/fastq.o src/fastq.cpp: In function 'int64 gzsize(const char*)': src/fastq.cpp:219:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 219 | fread(buffer, 1, 4, fp); | ~~~~~^~~~~~~~~~~~~~~~~~ src/main.cpp: In function 'void cStats::printTime(const char*, FILE*, int)': src/main.cpp:501:62: warning: '%d' directive writing between 1 and 11 bytes into a region of size between 0 and 12 [-Wformat-overflow=] 501 | sprintf(result, "%.3s %.3s%3d %.2d:%.2d:%.2d %d", | ^~ In member function 'char* cStats::timeStamp()', inlined from 'void cStats::printTime(const char*, FILE*, int)' at src/main.cpp:511:18: src/main.cpp:501:33: note: directive argument in the range [-2147481748, 2147483647] 501 | sprintf(result, "%.3s %.3s%3d %.2d:%.2d:%.2d %d", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:970, from src/main.cpp:32: In function 'int sprintf(char*, const char*, ...)', inlined from 'char* cStats::timeStamp()' at src/main.cpp:501:10, inlined from 'void cStats::printTime(const char*, FILE*, int)' at src/main.cpp:511:18: /usr/include/aarch64-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output between 16 and 67 bytes into a destination of size 26 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/skewer-0.2.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O2 -Wl,-z,relro -Wl,-z,now -pthread src/main.o src/parameter.o src/matrix.o src/fastq.o -o skewer make[1]: Leaving directory '/build/reproducible-path/skewer-0.2.2' dh_auto_test rm -fr -- /tmp/dh-xdg-rundir-kJCYA6al create-stamp debian/debhelper-build-stamp dh_prep rm -f -- debian/skewer.substvars rm -fr -- debian/.debhelper/generated/skewer/ debian/skewer/ debian/tmp/ dh_install install -m0755 -d debian/skewer/usr/bin cp --reflink=auto -a ./skewer debian/skewer/usr/bin/ dh_installdocs install -m0755 -d debian/skewer/usr/share/doc/skewer install -m0755 -d debian/skewer/usr/share/doc/skewer cp --reflink=auto -a ./README.md debian/skewer/usr/share/doc/skewer cp --reflink=auto -a ./debian/README.test debian/skewer/usr/share/doc/skewer cp --reflink=auto -a ./debian/tests/run-unit-test debian/skewer/usr/share/doc/skewer cp --reflink=auto -a ./debian/tests/get-test-data debian/skewer/usr/share/doc/skewer chmod -R u\+rw,go=rX debian/skewer/usr/share/doc install -p -m0644 debian/copyright debian/skewer/usr/share/doc/skewer/copyright dh_installchangelogs install -m0755 -d debian/skewer/usr/share/doc/skewer install -p -m0644 debian/.debhelper/generated/skewer/dh_installchangelogs.dch.trimmed debian/skewer/usr/share/doc/skewer/changelog.Debian dh_installexamples install -m0755 -d debian/skewer/usr/share/doc/skewer/examples cp --reflink=auto -a ./debian/tests/data/adapters.fa debian/skewer/usr/share/doc/skewer/examples cp --reflink=auto -a ./debian/tests/data/data.fastq.gz debian/skewer/usr/share/doc/skewer/examples dh_perl dh_link dh_strip_nondeterminism Using 1635691247 as canonical time Normalizing debian/skewer/usr/share/doc/skewer/examples/data.fastq.gz using File::StripNondeterminism::handlers::gzip dh_compress cd debian/skewer chmod a-x usr/share/doc/skewer/changelog.Debian gzip -9nf usr/share/doc/skewer/changelog.Debian cd '/build/reproducible-path/skewer-0.2.2' dh_fixperms find debian/skewer ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/skewer/usr/share/doc -type f -a -true -a ! -regex 'debian/skewer/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/skewer/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/skewer -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/skewer/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x dh_missing dh_dwz -a dwz -- debian/skewer/usr/bin/skewer dh_strip -a install -m0755 -d debian/.debhelper/skewer/dbgsym-root/usr/lib/debug/.build-id/94 objcopy --only-keep-debug --compress-debug-sections debian/skewer/usr/bin/skewer debian/.debhelper/skewer/dbgsym-root/usr/lib/debug/.build-id/94/ec11bbd56c5500a7b6a37536a1f36a58c57061.debug chmod 0644 -- debian/.debhelper/skewer/dbgsym-root/usr/lib/debug/.build-id/94/ec11bbd56c5500a7b6a37536a1f36a58c57061.debug strip --remove-section=.comment --remove-section=.note debian/skewer/usr/bin/skewer objcopy --add-gnu-debuglink debian/.debhelper/skewer/dbgsym-root/usr/lib/debug/.build-id/94/ec11bbd56c5500a7b6a37536a1f36a58c57061.debug debian/skewer/usr/bin/skewer install -m0755 -d debian/.debhelper/skewer/dbgsym-root/usr/share/doc ln -s skewer debian/.debhelper/skewer/dbgsym-root/usr/share/doc/skewer-dbgsym install -m0755 -d debian/.debhelper/skewer dh_makeshlibs -a rm -f debian/skewer/DEBIAN/shlibs dh_shlibdeps -a install -m0755 -d debian/skewer/DEBIAN dpkg-shlibdeps -Tdebian/skewer.substvars debian/skewer/usr/bin/skewer dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb install -m0755 -d debian/skewer/DEBIAN dh_gencontrol install -m0755 -d debian/skewer/DEBIAN echo misc:Depends= >> debian/skewer.substvars echo misc:Pre-Depends= >> debian/skewer.substvars install -m0755 -d debian/.debhelper/skewer/dbgsym-root/DEBIAN dpkg-gencontrol -pskewer -ldebian/changelog -Tdebian/skewer.substvars -cdebian/control -Pdebian/.debhelper/skewer/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=skewer-dbgsym -DDepends="skewer (= \${binary:Version})" -DDescription="debug symbols for skewer" -DBuild-Ids=94ec11bbd56c5500a7b6a37536a1f36a58c57061 -DSection=debug -UMulti-Arch -UReplaces -UBreaks chmod 0644 -- debian/.debhelper/skewer/dbgsym-root/DEBIAN/control dpkg-gencontrol -pskewer -ldebian/changelog -Tdebian/skewer.substvars -cdebian/control -Pdebian/skewer chmod 0644 -- debian/skewer/DEBIAN/control dh_md5sums install -m0755 -d debian/skewer/DEBIAN cd debian/skewer >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/skewer/DEBIAN/md5sums install -m0755 -d debian/.debhelper/skewer/dbgsym-root/DEBIAN cd debian/.debhelper/skewer/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/skewer/dbgsym-root/DEBIAN/md5sums dh_builddeb dpkg-deb --root-owner-group --build debian/.debhelper/skewer/dbgsym-root .. dpkg-deb --root-owner-group --build debian/skewer .. dpkg-deb: building package 'skewer-dbgsym' in '../skewer-dbgsym_0.2.2-6_arm64.deb'. dpkg-deb: building package 'skewer' in '../skewer_0.2.2-6_arm64.deb'. dpkg-genbuildinfo --build=binary -O../skewer_0.2.2-6_arm64.buildinfo dpkg-genchanges --build=binary -O../skewer_0.2.2-6_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/393941 and its subdirectories I: Current time: Thu Dec 3 13:30:02 -12 2026 I: pbuilder-time-stamp: 1796347802 Fri Dec 4 01:30:02 UTC 2026 I: Signing ./b1/skewer_0.2.2-6_arm64.buildinfo as skewer_0.2.2-6_arm64.buildinfo.asc Fri Dec 4 01:30:02 UTC 2026 I: Signed ./b1/skewer_0.2.2-6_arm64.buildinfo as ./b1/skewer_0.2.2-6_arm64.buildinfo.asc Fri Dec 4 01:30:02 UTC 2026 - build #1 for skewer/forky/arm64 on codethink03-arm64 done. Starting cleanup. All cleanup done. Fri Dec 4 01:30:02 UTC 2026 - reproducible_build.sh stopped running as /tmp/jenkins-script-ZqCgcieR, removing. /srv/reproducible-results/rbuild-debian/r-b-build.qMCbr7qe: total 16 drwxrwxr-x 2 jenkins jenkins 4096 Oct 31 19:07 b1 drwxrwxr-x 2 jenkins jenkins 4096 Oct 31 19:06 b2 -rw------- 1 jenkins jenkins 3038 Oct 31 19:06 rbuildlog.5LjUtyH -rw-rw-r-- 1 jenkins jenkins 1941 Oct 31 2021 skewer_0.2.2-6.dsc /srv/reproducible-results/rbuild-debian/r-b-build.qMCbr7qe/b1: total 748 -rw-r--r-- 1 jenkins jenkins 26535 Oct 31 19:07 build.log -rw-r--r-- 1 jenkins jenkins 599636 Oct 31 19:07 skewer-dbgsym_0.2.2-6_arm64.deb -rw-r--r-- 1 jenkins jenkins 21760 Oct 31 19:07 skewer_0.2.2-6.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 1941 Oct 31 19:07 skewer_0.2.2-6.dsc -rw-r--r-- 1 jenkins jenkins 4721 Oct 31 19:07 skewer_0.2.2-6_arm64.buildinfo -rw-rw-r-- 1 jenkins jenkins 5603 Oct 31 19:07 skewer_0.2.2-6_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1361 Oct 31 19:07 skewer_0.2.2-6_arm64.changes -rw-r--r-- 1 jenkins jenkins 79600 Oct 31 19:07 skewer_0.2.2-6_arm64.deb -rw-r--r-- 1 jenkins jenkins 1221 Oct 31 19:07 skewer_0.2.2-6_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.qMCbr7qe/b2: total 0 Fri Oct 31 19:07:03 UTC 2025 I: Deleting $TMPDIR on codethink03-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Dec 3 13:29:31 -12 2026 I: pbuilder-time-stamp: 1796347771 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [skewer_0.2.2-6.dsc] I: copying [./skewer_0.2.2.orig.tar.gz] I: copying [./skewer_0.2.2-6.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./skewer_0.2.2-6.dsc: no acceptable signature found dpkg-source: info: extracting skewer in skewer-0.2.2 dpkg-source: info: unpacking skewer_0.2.2.orig.tar.gz dpkg-source: info: unpacking skewer_0.2.2-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fixMakefile.patch dpkg-source: info: applying gcc11.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/393941/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='forky' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='28974a4c0aab4150b8d61005ae26c595' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='393941' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.qMCbr7qe/pbuilderrc_TpRK --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.qMCbr7qe/b1 --logfile b1/build.log skewer_0.2.2-6.dsc' SUDO_GID='109' SUDO_HOME='/var/lib/jenkins' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink03-arm64 6.12.48+deb13-cloud-arm64 #1 SMP Debian 6.12.48-1 (2025-09-20) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/393941/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19971 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2-16{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 29 newly installed, 0 to remove and 0 not upgraded. Need to get 11.0 MB of archives. After unpacking 45.0 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian forky/main arm64 sensible-utils all 0.0.26 [27.0 kB] Get: 2 http://deb.debian.org/debian forky/main arm64 libmagic-mgc arm64 1:5.46-5 [338 kB] Get: 3 http://deb.debian.org/debian forky/main arm64 libmagic1t64 arm64 1:5.46-5 [103 kB] Get: 4 http://deb.debian.org/debian forky/main arm64 file arm64 1:5.46-5 [43.7 kB] Get: 5 http://deb.debian.org/debian forky/main arm64 gettext-base arm64 0.23.1-2+b1 [241 kB] Get: 6 http://deb.debian.org/debian forky/main arm64 libuchardet0 arm64 0.0.8-2 [69.0 kB] Get: 7 http://deb.debian.org/debian forky/main arm64 groff-base arm64 1.23.0-9 [1130 kB] Get: 8 http://deb.debian.org/debian forky/main arm64 bsdextrautils arm64 2.41.2-4 [97.3 kB] Get: 9 http://deb.debian.org/debian forky/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 10 http://deb.debian.org/debian forky/main arm64 man-db arm64 2.13.1-1 [1453 kB] Get: 11 http://deb.debian.org/debian forky/main arm64 m4 arm64 1.4.20-2 [315 kB] Get: 12 http://deb.debian.org/debian forky/main arm64 autoconf all 2.72-3.1 [494 kB] Get: 13 http://deb.debian.org/debian forky/main arm64 autotools-dev all 20240727.1 [60.2 kB] Get: 14 http://deb.debian.org/debian forky/main arm64 automake all 1:1.18.1-2 [877 kB] Get: 15 http://deb.debian.org/debian forky/main arm64 autopoint all 0.23.1-2 [770 kB] Get: 16 http://deb.debian.org/debian forky/main arm64 libdebhelper-perl all 13.28 [92.4 kB] Get: 17 http://deb.debian.org/debian forky/main arm64 libtool all 2.5.4-7 [540 kB] Get: 18 http://deb.debian.org/debian forky/main arm64 dh-autoreconf all 21 [12.2 kB] Get: 19 http://deb.debian.org/debian forky/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian forky/main arm64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 21 http://deb.debian.org/debian forky/main arm64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 22 http://deb.debian.org/debian forky/main arm64 libelf1t64 arm64 0.193-3 [189 kB] Get: 23 http://deb.debian.org/debian forky/main arm64 dwz arm64 0.16-2 [100 kB] Get: 24 http://deb.debian.org/debian forky/main arm64 libunistring5 arm64 1.3-2 [453 kB] Get: 25 http://deb.debian.org/debian forky/main arm64 libxml2-16 arm64 2.14.6+dfsg-0.1 [601 kB] Get: 26 http://deb.debian.org/debian forky/main arm64 gettext arm64 0.23.1-2+b1 [1612 kB] Get: 27 http://deb.debian.org/debian forky/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 28 http://deb.debian.org/debian forky/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian forky/main arm64 debhelper all 13.28 [941 kB] Fetched 11.0 MB in 0s (81.5 MB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19971 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.46-5_arm64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../02-libmagic1t64_1%3a5.46-5_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.46-5_arm64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.23.1-2+b1_arm64.deb ... Unpacking gettext-base (0.23.1-2+b1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../05-libuchardet0_0.0.8-2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-2) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-9_arm64.deb ... Unpacking groff-base (1.23.0-9) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.41.2-4_arm64.deb ... Unpacking bsdextrautils (2.41.2-4) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../08-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.1-1_arm64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.20-2_arm64.deb ... Unpacking m4 (1.4.20-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.18.1-2_all.deb ... Unpacking automake (1:1.18.1-2) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.23.1-2_all.deb ... Unpacking autopoint (0.23.1-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.28_all.deb ... Unpacking libdebhelper-perl (13.28) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.5.4-7_all.deb ... Unpacking libtool (2.5.4-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_21_all.deb ... Unpacking dh-autoreconf (21) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../19-libfile-stripnondeterminism-perl_1.15.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.15.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../20-dh-strip-nondeterminism_1.15.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.15.0-1) ... Selecting previously unselected package libelf1t64:arm64. Preparing to unpack .../21-libelf1t64_0.193-3_arm64.deb ... Unpacking libelf1t64:arm64 (0.193-3) ... Selecting previously unselected package dwz. Preparing to unpack .../22-dwz_0.16-2_arm64.deb ... Unpacking dwz (0.16-2) ... Selecting previously unselected package libunistring5:arm64. Preparing to unpack .../23-libunistring5_1.3-2_arm64.deb ... Unpacking libunistring5:arm64 (1.3-2) ... Selecting previously unselected package libxml2-16:arm64. Preparing to unpack .../24-libxml2-16_2.14.6+dfsg-0.1_arm64.deb ... Unpacking libxml2-16:arm64 (2.14.6+dfsg-0.1) ... Selecting previously unselected package gettext. Preparing to unpack .../25-gettext_0.23.1-2+b1_arm64.deb ... Unpacking gettext (0.23.1-2+b1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../26-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../27-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../28-debhelper_13.28_all.deb ... Unpacking debhelper (13.28) ... Setting up libpipeline1:arm64 (1.5.8-1) ... Setting up bsdextrautils (2.41.2-4) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libxml2-16:arm64 (2.14.6+dfsg-0.1) ... Setting up libdebhelper-perl (13.28) ... Setting up libmagic1t64:arm64 (1:5.46-5) ... Setting up gettext-base (0.23.1-2+b1) ... Setting up m4 (1.4.20-2) ... Setting up file (1:5.46-5) ... Setting up libelf1t64:arm64 (0.193-3) ... Setting up autotools-dev (20240727.1) ... Setting up libunistring5:arm64 (1.3-2) ... Setting up autopoint (0.23.1-2) ... Setting up autoconf (2.72-3.1) ... Setting up dwz (0.16-2) ... Setting up sensible-utils (0.0.26) ... Setting up libuchardet0:arm64 (0.0.8-2) ... Setting up automake (1:1.18.1-2) ... update-alternatives: using /usr/bin/automake-1.18 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up gettext (0.23.1-2+b1) ... Setting up libtool (2.5.4-7) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (21) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up groff-base (1.23.0-9) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.28) ... Processing triggers for libc-bin (2.41-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/skewer-0.2.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../skewer_0.2.2-6_source.changes dpkg-buildpackage: info: source package skewer dpkg-buildpackage: info: source version 0.2.2-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_auto_clean make -j12 clean make[1]: Entering directory '/build/reproducible-path/skewer-0.2.2' rm -rf src/main.o src/parameter.o src/matrix.o src/fastq.o skewer make[1]: Leaving directory '/build/reproducible-path/skewer-0.2.2' dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/skewer.substvars debian/files rm -fr -- debian/skewer/ debian/tmp/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \) debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure dh_auto_build make -j12 INSTALL="install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/skewer-0.2.2' g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/skewer-0.2.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O2 -c src/main.cpp -o src/main.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/skewer-0.2.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O2 -c src/parameter.cpp -o src/parameter.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/skewer-0.2.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O2 -c src/matrix.cpp -o src/matrix.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/skewer-0.2.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O2 -c src/fastq.cpp -o src/fastq.o src/fastq.cpp: In function 'int64 gzsize(const char*)': src/fastq.cpp:219:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 219 | fread(buffer, 1, 4, fp); | ~~~~~^~~~~~~~~~~~~~~~~~ src/main.cpp: In function 'void cStats::printTime(const char*, FILE*, int)': src/main.cpp:501:62: warning: '%d' directive writing between 1 and 11 bytes into a region of size between 0 and 12 [-Wformat-overflow=] 501 | sprintf(result, "%.3s %.3s%3d %.2d:%.2d:%.2d %d", | ^~ In member function 'char* cStats::timeStamp()', inlined from 'void cStats::printTime(const char*, FILE*, int)' at src/main.cpp:511:18: src/main.cpp:501:33: note: directive argument in the range [-2147481748, 2147483647] 501 | sprintf(result, "%.3s %.3s%3d %.2d:%.2d:%.2d %d", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:970, from src/main.cpp:32: In function 'int sprintf(char*, const char*, ...)', inlined from 'char* cStats::timeStamp()' at src/main.cpp:501:10, inlined from 'void cStats::printTime(const char*, FILE*, int)' at src/main.cpp:511:18: /usr/include/aarch64-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output between 16 and 67 bytes into a destination of size 26 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/skewer-0.2.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O2 -Wl,-z,relro -Wl,-z,now -pthread src/main.o src/parameter.o src/matrix.o src/fastq.o -o skewer make[1]: Leaving directory '/build/reproducible-path/skewer-0.2.2' dh_auto_test rm -fr -- /tmp/dh-xdg-rundir-kJCYA6al create-stamp debian/debhelper-build-stamp dh_prep rm -f -- debian/skewer.substvars rm -fr -- debian/.debhelper/generated/skewer/ debian/skewer/ debian/tmp/ dh_install install -m0755 -d debian/skewer/usr/bin cp --reflink=auto -a ./skewer debian/skewer/usr/bin/ dh_installdocs install -m0755 -d debian/skewer/usr/share/doc/skewer install -m0755 -d debian/skewer/usr/share/doc/skewer cp --reflink=auto -a ./README.md debian/skewer/usr/share/doc/skewer cp --reflink=auto -a ./debian/README.test debian/skewer/usr/share/doc/skewer cp --reflink=auto -a ./debian/tests/run-unit-test debian/skewer/usr/share/doc/skewer cp --reflink=auto -a ./debian/tests/get-test-data debian/skewer/usr/share/doc/skewer chmod -R u\+rw,go=rX debian/skewer/usr/share/doc install -p -m0644 debian/copyright debian/skewer/usr/share/doc/skewer/copyright dh_installchangelogs install -m0755 -d debian/skewer/usr/share/doc/skewer install -p -m0644 debian/.debhelper/generated/skewer/dh_installchangelogs.dch.trimmed debian/skewer/usr/share/doc/skewer/changelog.Debian dh_installexamples install -m0755 -d debian/skewer/usr/share/doc/skewer/examples cp --reflink=auto -a ./debian/tests/data/adapters.fa debian/skewer/usr/share/doc/skewer/examples cp --reflink=auto -a ./debian/tests/data/data.fastq.gz debian/skewer/usr/share/doc/skewer/examples dh_perl dh_link dh_strip_nondeterminism Using 1635691247 as canonical time Normalizing debian/skewer/usr/share/doc/skewer/examples/data.fastq.gz using File::StripNondeterminism::handlers::gzip dh_compress cd debian/skewer chmod a-x usr/share/doc/skewer/changelog.Debian gzip -9nf usr/share/doc/skewer/changelog.Debian cd '/build/reproducible-path/skewer-0.2.2' dh_fixperms find debian/skewer ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/skewer/usr/share/doc -type f -a -true -a ! -regex 'debian/skewer/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/skewer/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/skewer -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/skewer/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x dh_missing dh_dwz -a dwz -- debian/skewer/usr/bin/skewer dh_strip -a install -m0755 -d debian/.debhelper/skewer/dbgsym-root/usr/lib/debug/.build-id/94 objcopy --only-keep-debug --compress-debug-sections debian/skewer/usr/bin/skewer debian/.debhelper/skewer/dbgsym-root/usr/lib/debug/.build-id/94/ec11bbd56c5500a7b6a37536a1f36a58c57061.debug chmod 0644 -- debian/.debhelper/skewer/dbgsym-root/usr/lib/debug/.build-id/94/ec11bbd56c5500a7b6a37536a1f36a58c57061.debug strip --remove-section=.comment --remove-section=.note debian/skewer/usr/bin/skewer objcopy --add-gnu-debuglink debian/.debhelper/skewer/dbgsym-root/usr/lib/debug/.build-id/94/ec11bbd56c5500a7b6a37536a1f36a58c57061.debug debian/skewer/usr/bin/skewer install -m0755 -d debian/.debhelper/skewer/dbgsym-root/usr/share/doc ln -s skewer debian/.debhelper/skewer/dbgsym-root/usr/share/doc/skewer-dbgsym install -m0755 -d debian/.debhelper/skewer dh_makeshlibs -a rm -f debian/skewer/DEBIAN/shlibs dh_shlibdeps -a install -m0755 -d debian/skewer/DEBIAN dpkg-shlibdeps -Tdebian/skewer.substvars debian/skewer/usr/bin/skewer dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb install -m0755 -d debian/skewer/DEBIAN dh_gencontrol install -m0755 -d debian/skewer/DEBIAN echo misc:Depends= >> debian/skewer.substvars echo misc:Pre-Depends= >> debian/skewer.substvars install -m0755 -d debian/.debhelper/skewer/dbgsym-root/DEBIAN dpkg-gencontrol -pskewer -ldebian/changelog -Tdebian/skewer.substvars -cdebian/control -Pdebian/.debhelper/skewer/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=skewer-dbgsym -DDepends="skewer (= \${binary:Version})" -DDescription="debug symbols for skewer" -DBuild-Ids=94ec11bbd56c5500a7b6a37536a1f36a58c57061 -DSection=debug -UMulti-Arch -UReplaces -UBreaks chmod 0644 -- debian/.debhelper/skewer/dbgsym-root/DEBIAN/control dpkg-gencontrol -pskewer -ldebian/changelog -Tdebian/skewer.substvars -cdebian/control -Pdebian/skewer chmod 0644 -- debian/skewer/DEBIAN/control dh_md5sums install -m0755 -d debian/skewer/DEBIAN cd debian/skewer >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/skewer/DEBIAN/md5sums install -m0755 -d debian/.debhelper/skewer/dbgsym-root/DEBIAN cd debian/.debhelper/skewer/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/skewer/dbgsym-root/DEBIAN/md5sums dh_builddeb dpkg-deb --root-owner-group --build debian/.debhelper/skewer/dbgsym-root .. dpkg-deb --root-owner-group --build debian/skewer .. dpkg-deb: building package 'skewer-dbgsym' in '../skewer-dbgsym_0.2.2-6_arm64.deb'. dpkg-deb: building package 'skewer' in '../skewer_0.2.2-6_arm64.deb'. dpkg-genbuildinfo --build=binary -O../skewer_0.2.2-6_arm64.buildinfo dpkg-genchanges --build=binary -O../skewer_0.2.2-6_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/393941 and its subdirectories I: Current time: Thu Dec 3 13:30:02 -12 2026 I: pbuilder-time-stamp: 1796347802 Fri Oct 31 19:07:03 UTC 2025 I: 1st build successful. Starting 2nd build on remote node codethink04-arm64.debian.net. Fri Oct 31 19:07:03 UTC 2025 I: Preparing to do remote build '2' on codethink04-arm64.debian.net. Fri Oct 31 19:07:03 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink04-arm64.debian.net is marked as down. Fri Oct 31 19:07:03 UTC 2025 - checking via ssh if codethink04-arm64.debian.net is up. removed '/tmp/read-only-fs-test-HajNlO' ==================================================================================== Fri Oct 31 19:07:04 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on codethink04-arm64, called using "2 skewer forky /srv/reproducible-results/rbuild-debian/r-b-build.qMCbr7qe 0.2.2-6" as arguments. Fri Oct 31 19:07:04 UTC 2025 - actually running "reproducible_build.sh" (md5sum bcb6fe1b50cf4e8eedacd0971a9eb63f) as "/tmp/jenkins-script-hQK0RkVB" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Fri Oct 31 19:07:04 UTC 2025 I: Downloading source for forky/skewer=0.2.2-6 Reading package lists... NOTICE: 'skewer' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/skewer.git Please use: git clone https://salsa.debian.org/med-team/skewer.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 60.1 kB of source archives. Get:1 http://deb.debian.org/debian forky/main skewer 0.2.2-6 (dsc) [1941 B] Get:2 http://deb.debian.org/debian forky/main skewer 0.2.2-6 (tar) [36.4 kB] Get:3 http://deb.debian.org/debian forky/main skewer 0.2.2-6 (diff) [21.8 kB] Fetched 60.1 kB in 0s (0 B/s) Download complete and in download only mode Reading package lists... NOTICE: 'skewer' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/skewer.git Please use: git clone https://salsa.debian.org/med-team/skewer.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 60.1 kB of source archives. Get:1 http://deb.debian.org/debian forky/main skewer 0.2.2-6 (dsc) [1941 B] Get:2 http://deb.debian.org/debian forky/main skewer 0.2.2-6 (tar) [36.4 kB] Get:3 http://deb.debian.org/debian forky/main skewer 0.2.2-6 (diff) [21.8 kB] Fetched 60.1 kB in 0s (0 B/s) Download complete and in download only mode ============================================================================= Re-Building skewer in forky on arm64 on codethink04-arm64 now. Date: Fri Oct 31 19:07:04 GMT 2025 Date UTC: Fri Oct 31 19:07:04 UTC 2025 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.qMCbr7qe + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.qMCbr7qe/pbuilderrc_rozT + case ${ARCH} in + case $ARCH in + locale=nl_BE + language=nl + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' skewer = debian-installer -o skewer = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' skewer = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.qMCbr7qe/pbuilderrc_rozT --distribution forky --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.qMCbr7qe/b2 --logfile b2/build.log skewer_0.2.2-6.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Sat Nov 1 09:07:05 +14 2025 I: pbuilder-time-stamp: 1761937625 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [skewer_0.2.2-6.dsc] I: copying [./skewer_0.2.2.orig.tar.gz] I: copying [./skewer_0.2.2-6.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./skewer_0.2.2-6.dsc: no acceptable signature found dpkg-source: info: extracting skewer in skewer-0.2.2 dpkg-source: info: unpacking skewer_0.2.2.orig.tar.gz dpkg-source: info: unpacking skewer_0.2.2-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fixMakefile.patch dpkg-source: info: applying gcc11.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/795407/tmp/hooks/D01_modify_environment starting debug: Running on codethink04-arm64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Oct 31 19:07 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/795407/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/795407/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") BASH_VERSION='5.3.3(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=arm64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 nocheck' DIRSTACK=() DISTRIBUTION=forky EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=aarch64 HOST_ARCH=arm64 IFS=' ' INVOCATION_ID=d8fe8de389db4eff8f992c42a0758576 LANG=C LANGUAGE=nl_BE:nl LC_ALL=C MACHTYPE=aarch64-unknown-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=795407 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.qMCbr7qe/pbuilderrc_rozT --distribution forky --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.qMCbr7qe/b2 --logfile b2/build.log skewer_0.2.2-6.dsc' SUDO_GID=109 SUDO_HOME=/var/lib/jenkins SUDO_UID=104 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://192.168.101.4:3128 I: uname -a Linux i-capture-the-hostname 6.12.48+deb13-cloud-arm64 #1 SMP Debian 6.12.48-1 (2025-09-20) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/795407/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19971 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2-16{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 29 newly installed, 0 to remove and 0 not upgraded. Need to get 11.0 MB of archives. After unpacking 45.0 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian forky/main arm64 sensible-utils all 0.0.26 [27.0 kB] Get: 2 http://deb.debian.org/debian forky/main arm64 libmagic-mgc arm64 1:5.46-5 [338 kB] Get: 3 http://deb.debian.org/debian forky/main arm64 libmagic1t64 arm64 1:5.46-5 [103 kB] Get: 4 http://deb.debian.org/debian forky/main arm64 file arm64 1:5.46-5 [43.7 kB] Get: 5 http://deb.debian.org/debian forky/main arm64 gettext-base arm64 0.23.1-2+b1 [241 kB] Get: 6 http://deb.debian.org/debian forky/main arm64 libuchardet0 arm64 0.0.8-2 [69.0 kB] Get: 7 http://deb.debian.org/debian forky/main arm64 groff-base arm64 1.23.0-9 [1130 kB] Get: 8 http://deb.debian.org/debian forky/main arm64 bsdextrautils arm64 2.41.2-4 [97.3 kB] Get: 9 http://deb.debian.org/debian forky/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 10 http://deb.debian.org/debian forky/main arm64 man-db arm64 2.13.1-1 [1453 kB] Get: 11 http://deb.debian.org/debian forky/main arm64 m4 arm64 1.4.20-2 [315 kB] Get: 12 http://deb.debian.org/debian forky/main arm64 autoconf all 2.72-3.1 [494 kB] Get: 13 http://deb.debian.org/debian forky/main arm64 autotools-dev all 20240727.1 [60.2 kB] Get: 14 http://deb.debian.org/debian forky/main arm64 automake all 1:1.18.1-2 [877 kB] Get: 15 http://deb.debian.org/debian forky/main arm64 autopoint all 0.23.1-2 [770 kB] Get: 16 http://deb.debian.org/debian forky/main arm64 libdebhelper-perl all 13.28 [92.4 kB] Get: 17 http://deb.debian.org/debian forky/main arm64 libtool all 2.5.4-7 [540 kB] Get: 18 http://deb.debian.org/debian forky/main arm64 dh-autoreconf all 21 [12.2 kB] Get: 19 http://deb.debian.org/debian forky/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian forky/main arm64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 21 http://deb.debian.org/debian forky/main arm64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 22 http://deb.debian.org/debian forky/main arm64 libelf1t64 arm64 0.193-3 [189 kB] Get: 23 http://deb.debian.org/debian forky/main arm64 dwz arm64 0.16-2 [100 kB] Get: 24 http://deb.debian.org/debian forky/main arm64 libunistring5 arm64 1.3-2 [453 kB] Get: 25 http://deb.debian.org/debian forky/main arm64 libxml2-16 arm64 2.14.6+dfsg-0.1 [601 kB] Get: 26 http://deb.debian.org/debian forky/main arm64 gettext arm64 0.23.1-2+b1 [1612 kB] Get: 27 http://deb.debian.org/debian forky/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 28 http://deb.debian.org/debian forky/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian forky/main arm64 debhelper all 13.28 [941 kB] Fetched 11.0 MB in 0s (105 MB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19971 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.46-5_arm64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../02-libmagic1t64_1%3a5.46-5_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.46-5_arm64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.23.1-2+b1_arm64.deb ... Unpacking gettext-base (0.23.1-2+b1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../05-libuchardet0_0.0.8-2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-2) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-9_arm64.deb ... Unpacking groff-base (1.23.0-9) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.41.2-4_arm64.deb ... Unpacking bsdextrautils (2.41.2-4) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../08-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.1-1_arm64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.20-2_arm64.deb ... Unpacking m4 (1.4.20-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.18.1-2_all.deb ... Unpacking automake (1:1.18.1-2) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.23.1-2_all.deb ... Unpacking autopoint (0.23.1-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.28_all.deb ... Unpacking libdebhelper-perl (13.28) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.5.4-7_all.deb ... Unpacking libtool (2.5.4-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_21_all.deb ... Unpacking dh-autoreconf (21) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../19-libfile-stripnondeterminism-perl_1.15.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.15.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../20-dh-strip-nondeterminism_1.15.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.15.0-1) ... Selecting previously unselected package libelf1t64:arm64. Preparing to unpack .../21-libelf1t64_0.193-3_arm64.deb ... Unpacking libelf1t64:arm64 (0.193-3) ... Selecting previously unselected package dwz. Preparing to unpack .../22-dwz_0.16-2_arm64.deb ... Unpacking dwz (0.16-2) ... Selecting previously unselected package libunistring5:arm64. Preparing to unpack .../23-libunistring5_1.3-2_arm64.deb ... Unpacking libunistring5:arm64 (1.3-2) ... Selecting previously unselected package libxml2-16:arm64. Preparing to unpack .../24-libxml2-16_2.14.6+dfsg-0.1_arm64.deb ... Unpacking libxml2-16:arm64 (2.14.6+dfsg-0.1) ... Selecting previously unselected package gettext. Preparing to unpack .../25-gettext_0.23.1-2+b1_arm64.deb ... Unpacking gettext (0.23.1-2+b1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../26-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../27-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../28-debhelper_13.28_all.deb ... Unpacking debhelper (13.28) ... Setting up libpipeline1:arm64 (1.5.8-1) ... Setting up bsdextrautils (2.41.2-4) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libxml2-16:arm64 (2.14.6+dfsg-0.1) ... Setting up libdebhelper-perl (13.28) ... Setting up libmagic1t64:arm64 (1:5.46-5) ... Setting up gettext-base (0.23.1-2+b1) ... Setting up m4 (1.4.20-2) ... Setting up file (1:5.46-5) ... Setting up libelf1t64:arm64 (0.193-3) ... Setting up autotools-dev (20240727.1) ... Setting up libunistring5:arm64 (1.3-2) ... Setting up autopoint (0.23.1-2) ... Setting up autoconf (2.72-3.1) ... Setting up dwz (0.16-2) ... Setting up sensible-utils (0.0.26) ... Setting up libuchardet0:arm64 (0.0.8-2) ... Setting up automake (1:1.18.1-2) ... update-alternatives: using /usr/bin/automake-1.18 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up gettext (0.23.1-2+b1) ... Setting up libtool (2.5.4-7) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (21) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up groff-base (1.23.0-9) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.28) ... Processing triggers for libc-bin (2.41-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/795407/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for forky I: user script /srv/workspace/pbuilder/795407/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/skewer-0.2.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../skewer_0.2.2-6_source.changes dpkg-buildpackage: info: source package skewer dpkg-buildpackage: info: source version 0.2.2-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_auto_clean make -j12 clean make[1]: Entering directory '/build/reproducible-path/skewer-0.2.2' rm -rf src/main.o src/parameter.o src/matrix.o src/fastq.o skewer make[1]: Leaving directory '/build/reproducible-path/skewer-0.2.2' dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/skewer.substvars debian/files rm -fr -- debian/skewer/ debian/tmp/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \) debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure dh_auto_build make -j12 INSTALL="install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/skewer-0.2.2' g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/skewer-0.2.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O2 -c src/main.cpp -o src/main.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/skewer-0.2.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O2 -c src/parameter.cpp -o src/parameter.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/skewer-0.2.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O2 -c src/matrix.cpp -o src/matrix.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/skewer-0.2.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O2 -c src/fastq.cpp -o src/fastq.o src/fastq.cpp: In function 'int64 gzsize(const char*)': src/fastq.cpp:219:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 219 | fread(buffer, 1, 4, fp); | ~~~~~^~~~~~~~~~~~~~~~~~ src/main.cpp: In function 'void cStats::printTime(const char*, FILE*, int)': src/main.cpp:501:62: warning: '%d' directive writing between 1 and 11 bytes into a region of size between 0 and 12 [-Wformat-overflow=] 501 | sprintf(result, "%.3s %.3s%3d %.2d:%.2d:%.2d %d", | ^~ In member function 'char* cStats::timeStamp()', inlined from 'void cStats::printTime(const char*, FILE*, int)' at src/main.cpp:511:18: src/main.cpp:501:33: note: directive argument in the range [-2147481748, 2147483647] 501 | sprintf(result, "%.3s %.3s%3d %.2d:%.2d:%.2d %d", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:970, from src/main.cpp:32: In function 'int sprintf(char*, const char*, ...)', inlined from 'char* cStats::timeStamp()' at src/main.cpp:501:10, inlined from 'void cStats::printTime(const char*, FILE*, int)' at src/main.cpp:511:18: /usr/include/aarch64-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output between 16 and 67 bytes into a destination of size 26 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/skewer-0.2.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O2 -Wl,-z,relro -Wl,-z,now -pthread src/main.o src/parameter.o src/matrix.o src/fastq.o -o skewer make[1]: Leaving directory '/build/reproducible-path/skewer-0.2.2' dh: command-omitted: The call to "dh_auto_test" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_prep rm -f -- debian/skewer.substvars rm -fr -- debian/.debhelper/generated/skewer/ debian/skewer/ debian/tmp/ dh_install install -m0755 -d debian/skewer/usr/bin cp --reflink=auto -a ./skewer debian/skewer/usr/bin/ dh_installdocs install -m0755 -d debian/skewer/usr/share/doc/skewer install -m0755 -d debian/skewer/usr/share/doc/skewer cp --reflink=auto -a ./README.md debian/skewer/usr/share/doc/skewer cp --reflink=auto -a ./debian/README.test debian/skewer/usr/share/doc/skewer cp --reflink=auto -a ./debian/tests/run-unit-test debian/skewer/usr/share/doc/skewer cp --reflink=auto -a ./debian/tests/get-test-data debian/skewer/usr/share/doc/skewer chmod -R u\+rw,go=rX debian/skewer/usr/share/doc install -p -m0644 debian/copyright debian/skewer/usr/share/doc/skewer/copyright dh_installchangelogs install -m0755 -d debian/skewer/usr/share/doc/skewer install -p -m0644 debian/.debhelper/generated/skewer/dh_installchangelogs.dch.trimmed debian/skewer/usr/share/doc/skewer/changelog.Debian dh_installexamples install -m0755 -d debian/skewer/usr/share/doc/skewer/examples cp --reflink=auto -a ./debian/tests/data/adapters.fa debian/skewer/usr/share/doc/skewer/examples cp --reflink=auto -a ./debian/tests/data/data.fastq.gz debian/skewer/usr/share/doc/skewer/examples dh_perl dh_link dh_strip_nondeterminism Using 1635691247 as canonical time Normalizing debian/skewer/usr/share/doc/skewer/examples/data.fastq.gz using File::StripNondeterminism::handlers::gzip dh_compress cd debian/skewer chmod a-x usr/share/doc/skewer/changelog.Debian gzip -9nf usr/share/doc/skewer/changelog.Debian cd '/build/reproducible-path/skewer-0.2.2' dh_fixperms find debian/skewer ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/skewer/usr/share/doc -type f -a -true -a ! -regex 'debian/skewer/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/skewer/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/skewer -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/skewer/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x dh_missing dh_dwz -a dwz -- debian/skewer/usr/bin/skewer dh_strip -a install -m0755 -d debian/.debhelper/skewer/dbgsym-root/usr/lib/debug/.build-id/94 objcopy --only-keep-debug --compress-debug-sections debian/skewer/usr/bin/skewer debian/.debhelper/skewer/dbgsym-root/usr/lib/debug/.build-id/94/ec11bbd56c5500a7b6a37536a1f36a58c57061.debug chmod 0644 -- debian/.debhelper/skewer/dbgsym-root/usr/lib/debug/.build-id/94/ec11bbd56c5500a7b6a37536a1f36a58c57061.debug strip --remove-section=.comment --remove-section=.note debian/skewer/usr/bin/skewer objcopy --add-gnu-debuglink debian/.debhelper/skewer/dbgsym-root/usr/lib/debug/.build-id/94/ec11bbd56c5500a7b6a37536a1f36a58c57061.debug debian/skewer/usr/bin/skewer install -m0755 -d debian/.debhelper/skewer/dbgsym-root/usr/share/doc ln -s skewer debian/.debhelper/skewer/dbgsym-root/usr/share/doc/skewer-dbgsym install -m0755 -d debian/.debhelper/skewer dh_makeshlibs -a rm -f debian/skewer/DEBIAN/shlibs dh_shlibdeps -a install -m0755 -d debian/skewer/DEBIAN dpkg-shlibdeps -Tdebian/skewer.substvars debian/skewer/usr/bin/skewer dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb install -m0755 -d debian/skewer/DEBIAN dh_gencontrol install -m0755 -d debian/skewer/DEBIAN echo misc:Depends= >> debian/skewer.substvars echo misc:Pre-Depends= >> debian/skewer.substvars install -m0755 -d debian/.debhelper/skewer/dbgsym-root/DEBIAN dpkg-gencontrol -pskewer -ldebian/changelog -Tdebian/skewer.substvars -cdebian/control -Pdebian/.debhelper/skewer/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=skewer-dbgsym -DDepends="skewer (= \${binary:Version})" -DDescription="debug symbols for skewer" -DBuild-Ids=94ec11bbd56c5500a7b6a37536a1f36a58c57061 -DSection=debug -UMulti-Arch -UReplaces -UBreaks chmod 0644 -- debian/.debhelper/skewer/dbgsym-root/DEBIAN/control dpkg-gencontrol -pskewer -ldebian/changelog -Tdebian/skewer.substvars -cdebian/control -Pdebian/skewer chmod 0644 -- debian/skewer/DEBIAN/control dh_md5sums install -m0755 -d debian/skewer/DEBIAN cd debian/skewer >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/skewer/DEBIAN/md5sums install -m0755 -d debian/.debhelper/skewer/dbgsym-root/DEBIAN cd debian/.debhelper/skewer/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/skewer/dbgsym-root/DEBIAN/md5sums dh_builddeb dpkg-deb --root-owner-group --build debian/skewer .. dpkg-deb --root-owner-group --build debian/.debhelper/skewer/dbgsym-root .. dpkg-deb: building package 'skewer' in '../skewer_0.2.2-6_arm64.deb'. dpkg-deb: building package 'skewer-dbgsym' in '../skewer-dbgsym_0.2.2-6_arm64.deb'. dpkg-genbuildinfo --build=binary -O../skewer_0.2.2-6_arm64.buildinfo dpkg-genchanges --build=binary -O../skewer_0.2.2-6_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/795407/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/795407/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/795407 and its subdirectories I: Current time: Sat Nov 1 09:07:27 +14 2025 I: pbuilder-time-stamp: 1761937647 + false + set +x Fri Oct 31 19:07:27 UTC 2025 I: Signing ./b2/skewer_0.2.2-6_arm64.buildinfo as skewer_0.2.2-6_arm64.buildinfo.asc Fri Oct 31 19:07:27 UTC 2025 I: Signed ./b2/skewer_0.2.2-6_arm64.buildinfo as ./b2/skewer_0.2.2-6_arm64.buildinfo.asc Fri Oct 31 19:07:27 UTC 2025 - build #2 for skewer/forky/arm64 on codethink04-arm64 done. Starting cleanup. All cleanup done. Fri Oct 31 19:07:27 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-hQK0RkVB, removing. /srv/reproducible-results/rbuild-debian/r-b-build.qMCbr7qe: total 44 drwxrwxr-x 2 jenkins jenkins 4096 Oct 31 19:07 b1 drwxrwxr-x 2 jenkins jenkins 4096 Oct 31 19:07 b2 -rw------- 1 jenkins jenkins 29874 Oct 31 19:07 rbuildlog.5LjUtyH -rw-rw-r-- 1 jenkins jenkins 1941 Oct 31 2021 skewer_0.2.2-6.dsc /srv/reproducible-results/rbuild-debian/r-b-build.qMCbr7qe/b1: total 756 -rw-r--r-- 1 jenkins jenkins 26535 Oct 31 19:07 build.log -rw-r--r-- 1 jenkins jenkins 599636 Oct 31 19:07 skewer-dbgsym_0.2.2-6_arm64.deb -rw-r--r-- 1 jenkins jenkins 21760 Oct 31 19:07 skewer_0.2.2-6.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 1941 Oct 31 19:07 skewer_0.2.2-6.dsc -rw-r--r-- 1 jenkins jenkins 4721 Oct 31 19:07 skewer_0.2.2-6_arm64.buildinfo -rw-rw-r-- 1 jenkins jenkins 5603 Oct 31 19:07 skewer_0.2.2-6_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1361 Oct 31 19:07 skewer_0.2.2-6_arm64.changes -rw-r--r-- 1 jenkins jenkins 79600 Oct 31 19:07 skewer_0.2.2-6_arm64.deb -rw-r--r-- 1 jenkins jenkins 1221 Oct 31 19:07 skewer_0.2.2-6_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.qMCbr7qe/b2: total 748 -rw-rw-r-- 1 jenkins jenkins 28514 Oct 31 19:07 build.log -rw-r--r-- 1 jenkins jenkins 599636 Oct 31 19:07 skewer-dbgsym_0.2.2-6_arm64.deb -rw-r--r-- 1 jenkins jenkins 21760 Oct 31 19:07 skewer_0.2.2-6.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 1941 Oct 31 19:07 skewer_0.2.2-6.dsc -rw-rw-r-- 1 jenkins jenkins 4729 Oct 31 19:07 skewer_0.2.2-6_arm64.buildinfo -rw-rw-r-- 1 jenkins jenkins 5611 Oct 31 19:07 skewer_0.2.2-6_arm64.buildinfo.asc -rw-rw-r-- 1 jenkins jenkins 1361 Oct 31 19:07 skewer_0.2.2-6_arm64.changes -rw-r--r-- 1 jenkins jenkins 79600 Oct 31 19:07 skewer_0.2.2-6_arm64.deb -rw-rw-r-- 1 jenkins jenkins 1221 Oct 31 19:07 skewer_0.2.2-6_source.changes Fri Oct 31 19:07:28 UTC 2025 I: Deleting $TMPDIR on codethink04-arm64.debian.net. Fri Oct 31 19:07:29 UTC 2025 I: skewer_0.2.2-6_arm64.changes: Format: 1.8 Date: Sun, 31 Oct 2021 20:10:47 +0530 Source: skewer Binary: skewer skewer-dbgsym Architecture: arm64 Version: 0.2.2-6 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Nilesh Patra Description: skewer - post-processing of high-throughput DNA sequence reads Closes: 984334 Changes: skewer (0.2.2-6) unstable; urgency=medium . * Team upload. * Add patch to fix FTBFS with gcc-11 (Closes: #984334) Checksums-Sha1: 40cc9028bd97fea942528223a0d1cb7d7a0b0089 599636 skewer-dbgsym_0.2.2-6_arm64.deb c4293bd9b66328ea8297304a8007c92478b21ebc 4721 skewer_0.2.2-6_arm64.buildinfo 9c38c69f7623fb9c48b197fcaf10d25965592337 79600 skewer_0.2.2-6_arm64.deb Checksums-Sha256: 93c4a91651e2f60a76d1a81b0b2e3cc5c80a3978599a88851132f08445ac1532 599636 skewer-dbgsym_0.2.2-6_arm64.deb afafd67d996a747061deef3067c88cf457a438480fd32c2e65e0b71d4a207d9d 4721 skewer_0.2.2-6_arm64.buildinfo f30f6a8789269be7afc3da0fb76b6dde4aa3c4c210d9fdaa8b982743deb52a05 79600 skewer_0.2.2-6_arm64.deb Files: c6f5cab0937692aee23762f4243479b2 599636 debug optional skewer-dbgsym_0.2.2-6_arm64.deb 79f55ef90499cbc15195ca1263e00c90 4721 science optional skewer_0.2.2-6_arm64.buildinfo a8bd8092ea897dcfc88a2694cf3e2fa6 79600 science optional skewer_0.2.2-6_arm64.deb removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/forky/arm64/skewer_0.2.2-6.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/forky/arm64/skewer_0.2.2-6.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/forky/arm64/skewer_0.2.2-6.build1.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/forky/arm64/skewer_0.2.2-6.build2.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/buildinfo/forky/arm64/skewer_0.2.2-6_arm64.buildinfo' removed '/var/lib/jenkins/userContent/reproducible/debian/logdiffs/forky/arm64/skewer_0.2.2-6.diff.gz' Diff of the two buildlogs: -- --- b1/build.log 2025-10-31 19:07:03.029947584 +0000 +++ b2/build.log 2025-10-31 19:07:28.405979239 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Thu Dec 3 13:29:31 -12 2026 -I: pbuilder-time-stamp: 1796347771 +I: Current time: Sat Nov 1 09:07:05 +14 2025 +I: pbuilder-time-stamp: 1761937625 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration @@ -25,53 +25,85 @@ dpkg-source: info: applying gcc11.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/393941/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/795407/tmp/hooks/D01_modify_environment starting +debug: Running on codethink04-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Oct 31 19:07 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/795407/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/795407/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='forky' - HOME='/root' - HOST_ARCH='arm64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.3.3(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 nocheck' + DIRSTACK=() + DISTRIBUTION=forky + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='28974a4c0aab4150b8d61005ae26c595' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='393941' - PS1='# ' - PS2='> ' + INVOCATION_ID=d8fe8de389db4eff8f992c42a0758576 + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=795407 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.qMCbr7qe/pbuilderrc_TpRK --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.qMCbr7qe/b1 --logfile b1/build.log skewer_0.2.2-6.dsc' - SUDO_GID='109' - SUDO_HOME='/var/lib/jenkins' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.qMCbr7qe/pbuilderrc_rozT --distribution forky --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.qMCbr7qe/b2 --logfile b2/build.log skewer_0.2.2-6.dsc' + SUDO_GID=109 + SUDO_HOME=/var/lib/jenkins + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink03-arm64 6.12.48+deb13-cloud-arm64 #1 SMP Debian 6.12.48-1 (2025-09-20) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.12.48+deb13-cloud-arm64 #1 SMP Debian 6.12.48-1 (2025-09-20) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/393941/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/795407/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -136,7 +168,7 @@ Get: 27 http://deb.debian.org/debian forky/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 28 http://deb.debian.org/debian forky/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian forky/main arm64 debhelper all 13.28 [941 kB] -Fetched 11.0 MB in 0s (81.5 MB/s) +Fetched 11.0 MB in 0s (105 MB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19971 files and directories currently installed.) @@ -267,7 +299,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/skewer-0.2.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../skewer_0.2.2-6_source.changes +I: user script /srv/workspace/pbuilder/795407/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for forky +I: user script /srv/workspace/pbuilder/795407/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/skewer-0.2.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../skewer_0.2.2-6_source.changes dpkg-buildpackage: info: source package skewer dpkg-buildpackage: info: source version 0.2.2-6 dpkg-buildpackage: info: source distribution unstable @@ -333,8 +369,7 @@ | ~~~~~~~~~~~~~~~~~ g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/skewer-0.2.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O2 -Wl,-z,relro -Wl,-z,now -pthread src/main.o src/parameter.o src/matrix.o src/fastq.o -o skewer make[1]: Leaving directory '/build/reproducible-path/skewer-0.2.2' - dh_auto_test - rm -fr -- /tmp/dh-xdg-rundir-kJCYA6al +dh: command-omitted: The call to "dh_auto_test" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_prep rm -f -- debian/skewer.substvars @@ -414,10 +449,10 @@ cd debian/.debhelper/skewer/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/skewer/dbgsym-root/DEBIAN/md5sums dh_builddeb - dpkg-deb --root-owner-group --build debian/.debhelper/skewer/dbgsym-root .. dpkg-deb --root-owner-group --build debian/skewer .. -dpkg-deb: building package 'skewer-dbgsym' in '../skewer-dbgsym_0.2.2-6_arm64.deb'. + dpkg-deb --root-owner-group --build debian/.debhelper/skewer/dbgsym-root .. dpkg-deb: building package 'skewer' in '../skewer_0.2.2-6_arm64.deb'. +dpkg-deb: building package 'skewer-dbgsym' in '../skewer-dbgsym_0.2.2-6_arm64.deb'. dpkg-genbuildinfo --build=binary -O../skewer_0.2.2-6_arm64.buildinfo dpkg-genchanges --build=binary -O../skewer_0.2.2-6_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -425,12 +460,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/795407/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/795407/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/393941 and its subdirectories -I: Current time: Thu Dec 3 13:30:02 -12 2026 -I: pbuilder-time-stamp: 1796347802 +I: removing directory /srv/workspace/pbuilder/795407 and its subdirectories +I: Current time: Sat Nov 1 09:07:27 +14 2025 +I: pbuilder-time-stamp: 1761937647 Compressing the 2nd log... /var/lib/jenkins/userContent/reproducible/debian/logdiffs/forky/arm64/skewer_0.2.2-6.diff: 66.6% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/forky/arm64/skewer_0.2.2-6.diff.gz b2/build.log: 73.9% -- replaced with stdout Compressing the 1st log... b1/build.log: 74.6% -- replaced with stdout Fri Oct 31 19:07:29 UTC 2025 I: diffoscope 306 will be used to compare the two builds: ++ date -u +%s + DIFFOSCOPE_STAMP=/var/log/reproducible-builds/diffoscope_stamp_skewer_forky_arm64_1761937649 + touch /var/log/reproducible-builds/diffoscope_stamp_skewer_forky_arm64_1761937649 + RESULT=0 + systemd-run '--description=diffoscope on skewer/0.2.2-6 in forky/arm64' --slice=rb-build-diffoscope.slice -u rb-diffoscope-arm64_1-104102 '--property=SuccessExitStatus=1 124' --user --send-sighup --pipe --wait -E TMPDIR timeout 155m nice schroot --directory /srv/reproducible-results/rbuild-debian/r-b-build.qMCbr7qe --run-session -c jenkins-reproducible-forky-diffoscope-0cb555d9-50bc-4466-880c-e5b19e1ea4fb -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian/r-b-build.qMCbr7qe/dbd-tmp-REe7JBP ; timeout 150m diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.qMCbr7qe/skewer_0.2.2-6.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.qMCbr7qe/skewer_0.2.2-6.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.qMCbr7qe/skewer_0.2.2-6.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.qMCbr7qe/b1/skewer_0.2.2-6_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.qMCbr7qe/b2/skewer_0.2.2-6_arm64.changes' + false + set +x Running as unit: rb-diffoscope-arm64_1-104102.service; invocation ID: e7d6e567b3f24a378d52dbb0e297f516 # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.qMCbr7qe/skewer_0.2.2-6.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.qMCbr7qe/skewer_0.2.2-6.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.qMCbr7qe/skewer_0.2.2-6.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.qMCbr7qe/b1/skewer_0.2.2-6_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.qMCbr7qe/b2/skewer_0.2.2-6_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited, status=0/SUCCESS Service runtime: 208ms CPU time consumed: 171ms Memory peak: 17.7M (swap: 0B) _ ___| | _______ _____ _ __ / __| |/ / _ \ \ /\ / / _ \ '__| \__ \ < __/\ V V / __/ | |___/_|\_\___| \_/\_/ \___|_| Fri Oct 31 19:07:30 UTC 2025 I: diffoscope 306 found no differences in the changes files, and a .buildinfo file also exists. Fri Oct 31 19:07:30 UTC 2025 I: skewer from forky built successfully and reproducibly on arm64. INSERT 0 1 INSERT 0 1 DELETE 1 [2025-10-31 19:07:30] INFO: Starting at 2025-10-31 19:07:30.632209 [2025-10-31 19:07:30] INFO: Generating the pages of 1 package(s) [2025-10-31 19:07:30] CRITICAL: https://tests.reproducible-builds.org/debian/forky/arm64/skewer didn't produce a buildlog, even though it has been built. [2025-10-31 19:07:30] INFO: Finished at 2025-10-31 19:07:30.874462, took: 0:00:00.242256 Fri Oct 31 19:07:30 UTC 2025 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/forky/arm64/skewer.html Fri Oct 31 19:07:30 UTC 2025 I: Removing signed skewer_0.2.2-6_arm64.buildinfo.asc files: removed './b1/skewer_0.2.2-6_arm64.buildinfo.asc' removed './b2/skewer_0.2.2-6_arm64.buildinfo.asc' 1761937650 arm64 forky skewer Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/forky/arm64/skewer_0.2.2-6.rbuild.log: 71.2% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/forky/arm64/skewer_0.2.2-6.rbuild.log.gz [2025-10-31 19:07:31] INFO: Starting at 2025-10-31 19:07:31.192426 [2025-10-31 19:07:31] INFO: Generating the pages of 1 package(s) [2025-10-31 19:07:31] INFO: Finished at 2025-10-31 19:07:31.424099, took: 0:00:00.231677 All cleanup done. Fri Oct 31 19:07:31 UTC 2025 - total duration: 0h 1m 16s. Fri Oct 31 19:07:31 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-ppLif6cN, removing. Finished with result: success Main processes terminated with: code=exited, status=0/SUCCESS Service runtime: 1min 17.213s CPU time consumed: 3.072s Memory peak: 40M (swap: 0B)