Running as unit: rb-build-arm64_1-104142.service; invocation ID: 4d8f504af5664aca8d1f65bdd87a1475 ==================================================================================== Fri Oct 31 20:39:15 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_arm64_1) on jenkins, called using "codethink03-arm64 codethink04-arm64" as arguments. Fri Oct 31 20:39:15 UTC 2025 - actually running "reproducible_build.sh" (md5sum bcb6fe1b50cf4e8eedacd0971a9eb63f) as "/tmp/jenkins-script-FlqEvI1w" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Fri Oct 31 20:39:15 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink03-arm64.debian.net is marked as down. Fri Oct 31 20:39:15 UTC 2025 - checking via ssh if codethink03-arm64.debian.net is up. removed '/tmp/read-only-fs-test-fgFguh' Fri Oct 31 20:39:15 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink04-arm64.debian.net is marked as down. Fri Oct 31 20:39:15 UTC 2025 - checking via ssh if codethink04-arm64.debian.net is up. removed '/tmp/read-only-fs-test-kliWXt' ok, let's check if pbdagcon is building anywhere yet… ok, pbdagcon is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of pbdagcon in forky on arm64 on jenkins now. 1st build will be done on codethink03-arm64.debian.net. 2nd build will be done on codethink04-arm64.debian.net. ============================================================================= Fri Oct 31 20:39:30 UTC 2025 I: starting to build pbdagcon/forky/arm64 on jenkins on '2025-10-31 20:39' Fri Oct 31 20:39:30 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_1/104142/console.log 1761943170 arm64 forky pbdagcon Fri Oct 31 20:39:30 UTC 2025 I: Downloading source for forky/pbdagcon=0.3+git20180411.c14c422+dfsg-9 --2025-10-31 20:39:30-- http://deb.debian.org/debian/pool/main/p/pbdagcon/pbdagcon_0.3%2bgit20180411.c14c422%2bdfsg-9.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2538 (2.5K) [text/prs.lines.tag] Saving to: ‘pbdagcon_0.3+git20180411.c14c422+dfsg-9.dsc’ 0K .. 100% 305M=0s 2025-10-31 20:39:30 (305 MB/s) - ‘pbdagcon_0.3+git20180411.c14c422+dfsg-9.dsc’ saved [2538/2538] --2025-10-31 20:39:30-- http://deb.debian.org/debian/pool/main/p/pbdagcon/pbdagcon_0.3%2bgit20180411.c14c422%2bdfsg-9.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2538 (2.5K) [text/prs.lines.tag] Saving to: ‘pbdagcon_0.3+git20180411.c14c422+dfsg-9.dsc’ 0K .. 100% 305M=0s 2025-10-31 20:39:30 (305 MB/s) - ‘pbdagcon_0.3+git20180411.c14c422+dfsg-9.dsc’ saved [2538/2538] Fri Oct 31 20:39:30 UTC 2025 I: pbdagcon_0.3+git20180411.c14c422+dfsg-9.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: pbdagcon Binary: pbdagcon Architecture: any Version: 0.3+git20180411.c14c422+dfsg-9 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://github.com/PacificBiosciences/pbdagcon Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/pbdagcon Vcs-Git: https://salsa.debian.org/med-team/pbdagcon.git Testsuite: autopkgtest Testsuite-Triggers: blasr, daligner, dazzdb Build-Depends: debhelper-compat (= 13), python3:any, zlib1g-dev, libhdf5-dev, libboost-dev, libtclap-dev, libpbseq-dev (>= 5.3.5+dfsg-4~), libpbbam-dev, libpbdata-dev (>= 5.3.5+dfsg-4~), libpbcopper-dev, libpbihdf-dev (>= 5.3.5+dfsg-4~), googletest Package-List: pbdagcon deb science optional arch=any Checksums-Sha1: 12afc3055828fc218ccab4e287d9e665ce6dec3a 79760 pbdagcon_0.3+git20180411.c14c422+dfsg.orig.tar.xz 76e14fa844654cec6b0633b9af5faba60e76a28a 58140 pbdagcon_0.3+git20180411.c14c422+dfsg-9.debian.tar.xz Checksums-Sha256: f554fedfaa673cb22bebb28d941139e72a1a9284039929c92b16d9c58fc1f8b9 79760 pbdagcon_0.3+git20180411.c14c422+dfsg.orig.tar.xz 5a6bce1eb4496e137670d4472fff3947cb8ffde5f08f0c50428df8b0065186bb 58140 pbdagcon_0.3+git20180411.c14c422+dfsg-9.debian.tar.xz Files: 675f3ae464f2315b689464c5ce3dd1e7 79760 pbdagcon_0.3+git20180411.c14c422+dfsg.orig.tar.xz 2c76bcc60a7f4eb12cd065a061d763d1 58140 pbdagcon_0.3+git20180411.c14c422+dfsg-9.debian.tar.xz Dgit: 23f940649935a208178080164ffcd3e6d566fe6f debian archive/debian/0.3+git20180411.c14c422+dfsg-9 https://git.dgit.debian.org/pbdagcon -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmbx0AYUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdrXpRAAxIZk9dyCi8pmHXAYy83he4i4hV8t O/Czn0pIC8V3kcOuwjDscUogpZlgkvzuxgB7jq8EeWUAKmjfz2/dclkKIDnaDvL9 gB01K+2N+DWCP4jc0Q5ywrv+q8Y2qqzG2MzwemTAW8jruP2kPV+85zx5CIq/pGg4 2/H6TMvIJwKuKCnl34ZUttdmJtV+5Y9CJRfU0qPDwfPpLEN212WmgEqb62/6EOe9 3o32ZOe3HDSjeaG4JzVXHg7PWbRjOmL2qJlI12lxTZEorPpPqx9lLVTSE4RCrppW Cyc5KrAVcQRxr04q3rs0cQJnMYfIbCSdLPP0ZQVWUUPb1SBuMK6599OqTa4LDDjo A1kac3qPgtpWbtGUjYPO+ey8v4zUTz7RernbBfDkVgVhB94UYp4RMYeZfuRMt1Ce PgufOnbUHzEjCQtMjnF88jxg/v7hqi7FkOq3azea8wziweUhv022mzE8og/Bk0Ft Dj/W4WRKv/akC9WaVCB3xyjwKBOYavrFd9uS4DIES+gYE8WYXzgXw47uT3em8UkN dgQYhiHvQy6KqaOpMAr6dqgTATJ6n1POSe0H0+S0RVik33aFplrt7JLJNvVJGdHC 6k8xo48siTx7nxfHdhbXAfJnlMnWMjnILosGQ+fQJ0H7R+3AZd1qK2PgUEfDvOsS fX8/o9mrav3a3EM= =8Mzb -----END PGP SIGNATURE----- Fri Oct 31 20:39:30 UTC 2025 I: Checking whether the package is not for us Fri Oct 31 20:39:30 UTC 2025 I: Starting 1st build on remote node codethink03-arm64.debian.net. Fri Oct 31 20:39:30 UTC 2025 I: Preparing to do remote build '1' on codethink03-arm64.debian.net. Fri Oct 31 20:39:30 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink03-arm64.debian.net is marked as down. Fri Oct 31 20:39:30 UTC 2025 - checking via ssh if codethink03-arm64.debian.net is up. removed '/tmp/read-only-fs-test-njGjR3' ==================================================================================== Fri Dec 4 03:02:31 UTC 2026 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on codethink03-arm64, called using "1 pbdagcon forky /srv/reproducible-results/rbuild-debian/r-b-build.zQTnpsm6 0.3+git20180411.c14c422+dfsg-9" as arguments. Fri Dec 4 03:02:31 UTC 2026 - actually running "reproducible_build.sh" (md5sum bcb6fe1b50cf4e8eedacd0971a9eb63f) as "/tmp/jenkins-script-hYWkFEKN" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Fri Dec 4 03:02:31 UTC 2026 I: Downloading source for forky/pbdagcon=0.3+git20180411.c14c422+dfsg-9 Reading package lists... NOTICE: 'pbdagcon' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/pbdagcon.git Please use: git clone https://salsa.debian.org/med-team/pbdagcon.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 140 kB of source archives. Get:1 http://deb.debian.org/debian forky/main pbdagcon 0.3+git20180411.c14c422+dfsg-9 (dsc) [2538 B] Get:2 http://deb.debian.org/debian forky/main pbdagcon 0.3+git20180411.c14c422+dfsg-9 (tar) [79.8 kB] Get:3 http://deb.debian.org/debian forky/main pbdagcon 0.3+git20180411.c14c422+dfsg-9 (diff) [58.1 kB] Fetched 140 kB in 0s (544 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'pbdagcon' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/pbdagcon.git Please use: git clone https://salsa.debian.org/med-team/pbdagcon.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 140 kB of source archives. Get:1 http://deb.debian.org/debian forky/main pbdagcon 0.3+git20180411.c14c422+dfsg-9 (dsc) [2538 B] Get:2 http://deb.debian.org/debian forky/main pbdagcon 0.3+git20180411.c14c422+dfsg-9 (tar) [79.8 kB] Get:3 http://deb.debian.org/debian forky/main pbdagcon 0.3+git20180411.c14c422+dfsg-9 (diff) [58.1 kB] Fetched 140 kB in 0s (544 kB/s) Download complete and in download only mode ============================================================================= Building pbdagcon in forky on arm64 on codethink03-arm64 now. Date: Fri Dec 4 03:02:32 GMT 2026 Date UTC: Fri Dec 4 03:02:32 UTC 2026 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Thu Dec 3 15:02:32 -12 2026 I: pbuilder-time-stamp: 1796353352 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [pbdagcon_0.3+git20180411.c14c422+dfsg-9.dsc] I: copying [./pbdagcon_0.3+git20180411.c14c422+dfsg.orig.tar.xz] I: copying [./pbdagcon_0.3+git20180411.c14c422+dfsg-9.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./pbdagcon_0.3+git20180411.c14c422+dfsg-9.dsc: no acceptable signature found dpkg-source: info: extracting pbdagcon in pbdagcon-0.3+git20180411.c14c422+dfsg dpkg-source: info: unpacking pbdagcon_0.3+git20180411.c14c422+dfsg.orig.tar.xz dpkg-source: info: unpacking pbdagcon_0.3+git20180411.c14c422+dfsg-9.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying compiler-flags.patch dpkg-source: info: applying 2to3.patch dpkg-source: info: applying libdata_libpbihdf.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2777547/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='forky' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='5748f5eaa02b4fde9cc963781c970e5d' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2777547' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.zQTnpsm6/pbuilderrc_0QAT --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.zQTnpsm6/b1 --logfile b1/build.log pbdagcon_0.3+git20180411.c14c422+dfsg-9.dsc' SUDO_GID='109' SUDO_HOME='/var/lib/jenkins' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink03-arm64 6.12.48+deb13-cloud-arm64 #1 SMP Debian 6.12.48-1 (2025-09-20) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2777547/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), python3:any, zlib1g-dev, libhdf5-dev, libboost-dev, libtclap-dev, libpbseq-dev (>= 5.3.5+dfsg-4~), libpbbam-dev, libpbdata-dev (>= 5.3.5+dfsg-4~), libpbcopper-dev, libpbihdf-dev (>= 5.3.5+dfsg-4~), googletest dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19971 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on python3:any. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libhdf5-dev; however: Package libhdf5-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-dev; however: Package libboost-dev is not installed. pbuilder-satisfydepends-dummy depends on libtclap-dev; however: Package libtclap-dev is not installed. pbuilder-satisfydepends-dummy depends on libpbseq-dev (>= 5.3.5+dfsg-4~); however: Package libpbseq-dev is not installed. pbuilder-satisfydepends-dummy depends on libpbbam-dev; however: Package libpbbam-dev is not installed. pbuilder-satisfydepends-dummy depends on libpbdata-dev (>= 5.3.5+dfsg-4~); however: Package libpbdata-dev is not installed. pbuilder-satisfydepends-dummy depends on libpbcopper-dev; however: Package libpbcopper-dev is not installed. pbuilder-satisfydepends-dummy depends on libpbihdf-dev (>= 5.3.5+dfsg-4~); however: Package libpbihdf-dev is not installed. pbuilder-satisfydepends-dummy depends on googletest; however: Package googletest is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} comerr-dev{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gcc-14-base{a} gettext{a} gettext-base{a} googletest{a} groff-base{a} hdf5-helpers{a} intltool-debian{a} krb5-multidev{a} libaec-dev{a} libaec0{a} libarchive-zip-perl{a} libblasr-dev{a} libblasr5.3.5{a} libboost-dev{a} libboost1.83-dev{a} libbrotli-dev{a} libbrotli1{a} libbz2-dev{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4-gnutls-dev{a} libcurl4t64{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libelf1t64{a} libevent-2.1-7t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgcc-14-dev{a} libgfortran5{a} libgmp-dev{a} libgmpxx4ldbl{a} libgnutls-dane0t64{a} libgnutls-openssl27t64{a} libgnutls28-dev{a} libgnutls30t64{a} libgssapi-krb5-2{a} libgssrpc4t64{a} libhdf5-310{a} libhdf5-cpp-310{a} libhdf5-dev{a} libhdf5-fortran-310{a} libhdf5-hl-310{a} libhdf5-hl-cpp-310{a} libhdf5-hl-fortran-310{a} libhts-dev{a} libhts3t64{a} libhtscodecs2{a} libidn2-0{a} libidn2-dev{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libk5crypto3{a} libkadm5clnt-mit12{a} libkadm5srv-mit12{a} libkdb5-10t64{a} libkeyutils1{a} libkrb5-3{a} libkrb5-dev{a} libkrb5support0{a} libldap-dev{a} libldap2{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp2-dev{a} libnghttp3-9{a} libnghttp3-dev{a} libngtcp2-16{a} libngtcp2-crypto-gnutls-dev{a} libngtcp2-crypto-gnutls8{a} libngtcp2-crypto-ossl0{a} libngtcp2-dev{a} libp11-kit-dev{a} libp11-kit0{a} libpbbam-dev{a} libpbbam2.4.0{a} libpbcopper-dev{a} libpbcopper2.3.0{a} libpbdata-dev{a} libpbihdf-dev{a} libpbseq-dev{a} libpipeline1{a} libpkgconf3{a} libpsl-dev{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} librtmp-dev{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1-dev{a} libssh2-1t64{a} libssl-dev{a} libstdc++-14-dev{a} libsz2{a} libtasn1-6{a} libtasn1-6-dev{a} libtclap-dev{a} libtool{a} libuchardet0{a} libunbound8{a} libunistring5{a} libxml2-16{a} libzstd-dev{a} m4{a} man-db{a} media-types{a} netbase{a} nettle-dev{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} python3{a} python3-minimal{a} python3.13{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules libtasn1-doc lynx publicsuffix wget 0 packages upgraded, 139 newly installed, 0 to remove and 0 not upgraded. Need to get 68.3 MB of archives. After unpacking 424 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian forky/main arm64 libexpat1 arm64 2.7.3-1 [96.5 kB] Get: 2 http://deb.debian.org/debian forky/main arm64 libpython3.13-minimal arm64 3.13.9-1 [858 kB] Get: 3 http://deb.debian.org/debian forky/main arm64 python3.13-minimal arm64 3.13.9-1 [2061 kB] Get: 4 http://deb.debian.org/debian forky/main arm64 python3-minimal arm64 3.13.7-1 [27.2 kB] Get: 5 http://deb.debian.org/debian forky/main arm64 media-types all 14.0.0 [30.8 kB] Get: 6 http://deb.debian.org/debian forky/main arm64 netbase all 6.5 [12.4 kB] Get: 7 http://deb.debian.org/debian forky/main arm64 tzdata all 2025b-5 [260 kB] Get: 8 http://deb.debian.org/debian forky/main arm64 libffi8 arm64 3.5.2-2 [21.5 kB] Get: 9 http://deb.debian.org/debian forky/main arm64 readline-common all 8.3-3 [74.8 kB] Get: 10 http://deb.debian.org/debian forky/main arm64 libreadline8t64 arm64 8.3-3 [169 kB] Get: 11 http://deb.debian.org/debian forky/main arm64 libpython3.13-stdlib arm64 3.13.9-1 [1900 kB] Get: 12 http://deb.debian.org/debian forky/main arm64 python3.13 arm64 3.13.9-1 [764 kB] Get: 13 http://deb.debian.org/debian forky/main arm64 libpython3-stdlib arm64 3.13.7-1 [10.2 kB] Get: 14 http://deb.debian.org/debian forky/main arm64 python3 arm64 3.13.7-1 [28.3 kB] Get: 15 http://deb.debian.org/debian forky/main arm64 sensible-utils all 0.0.26 [27.0 kB] Get: 16 http://deb.debian.org/debian forky/main arm64 libmagic-mgc arm64 1:5.46-5 [338 kB] Get: 17 http://deb.debian.org/debian forky/main arm64 libmagic1t64 arm64 1:5.46-5 [103 kB] Get: 18 http://deb.debian.org/debian forky/main arm64 file arm64 1:5.46-5 [43.7 kB] Get: 19 http://deb.debian.org/debian forky/main arm64 gettext-base arm64 0.23.1-2+b1 [241 kB] Get: 20 http://deb.debian.org/debian forky/main arm64 libuchardet0 arm64 0.0.8-2 [69.0 kB] Get: 21 http://deb.debian.org/debian forky/main arm64 groff-base arm64 1.23.0-9 [1130 kB] Get: 22 http://deb.debian.org/debian forky/main arm64 bsdextrautils arm64 2.41.2-4 [97.3 kB] Get: 23 http://deb.debian.org/debian forky/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 24 http://deb.debian.org/debian forky/main arm64 man-db arm64 2.13.1-1 [1453 kB] Get: 25 http://deb.debian.org/debian forky/main arm64 m4 arm64 1.4.20-2 [315 kB] Get: 26 http://deb.debian.org/debian forky/main arm64 autoconf all 2.72-3.1 [494 kB] Get: 27 http://deb.debian.org/debian forky/main arm64 autotools-dev all 20240727.1 [60.2 kB] Get: 28 http://deb.debian.org/debian forky/main arm64 automake all 1:1.18.1-2 [877 kB] Get: 29 http://deb.debian.org/debian forky/main arm64 autopoint all 0.23.1-2 [770 kB] Get: 30 http://deb.debian.org/debian forky/main arm64 libcom-err2 arm64 1.47.2-3+b3 [24.9 kB] Get: 31 http://deb.debian.org/debian forky/main arm64 comerr-dev arm64 2.1-1.47.2-3+b3 [56.9 kB] Get: 32 http://deb.debian.org/debian forky/main arm64 libdebhelper-perl all 13.28 [92.4 kB] Get: 33 http://deb.debian.org/debian forky/main arm64 libtool all 2.5.4-7 [540 kB] Get: 34 http://deb.debian.org/debian forky/main arm64 dh-autoreconf all 21 [12.2 kB] Get: 35 http://deb.debian.org/debian forky/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 36 http://deb.debian.org/debian forky/main arm64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 37 http://deb.debian.org/debian forky/main arm64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 38 http://deb.debian.org/debian forky/main arm64 libelf1t64 arm64 0.193-3 [189 kB] Get: 39 http://deb.debian.org/debian forky/main arm64 dwz arm64 0.16-2 [100 kB] Get: 40 http://deb.debian.org/debian forky/main arm64 libunistring5 arm64 1.3-2 [453 kB] Get: 41 http://deb.debian.org/debian forky/main arm64 libxml2-16 arm64 2.14.6+dfsg-0.1 [601 kB] Get: 42 http://deb.debian.org/debian forky/main arm64 gettext arm64 0.23.1-2+b1 [1612 kB] Get: 43 http://deb.debian.org/debian forky/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 44 http://deb.debian.org/debian forky/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 45 http://deb.debian.org/debian forky/main arm64 debhelper all 13.28 [941 kB] Get: 46 http://deb.debian.org/debian forky/main arm64 gcc-14-base arm64 14.3.0-10 [52.4 kB] Get: 47 http://deb.debian.org/debian forky/main arm64 googletest all 1.17.0-1 [522 kB] Get: 48 http://deb.debian.org/debian forky/main arm64 hdf5-helpers arm64 1.14.5+repack-4 [26.7 kB] Get: 49 http://deb.debian.org/debian forky/main arm64 libkrb5support0 arm64 1.21.3-5 [32.4 kB] Get: 50 http://deb.debian.org/debian forky/main arm64 libk5crypto3 arm64 1.21.3-5 [81.2 kB] Get: 51 http://deb.debian.org/debian forky/main arm64 libkeyutils1 arm64 1.6.3-6 [9716 B] Get: 52 http://deb.debian.org/debian forky/main arm64 libkrb5-3 arm64 1.21.3-5 [308 kB] Get: 53 http://deb.debian.org/debian forky/main arm64 libgssapi-krb5-2 arm64 1.21.3-5 [127 kB] Get: 54 http://deb.debian.org/debian forky/main arm64 libgssrpc4t64 arm64 1.21.3-5 [57.2 kB] Get: 55 http://deb.debian.org/debian forky/main arm64 libkadm5clnt-mit12 arm64 1.21.3-5 [41.1 kB] Get: 56 http://deb.debian.org/debian forky/main arm64 libkdb5-10t64 arm64 1.21.3-5 [41.3 kB] Get: 57 http://deb.debian.org/debian forky/main arm64 libkadm5srv-mit12 arm64 1.21.3-5 [53.0 kB] Get: 58 http://deb.debian.org/debian forky/main arm64 krb5-multidev arm64 1.21.3-5 [126 kB] Get: 59 http://deb.debian.org/debian forky/main arm64 libaec0 arm64 1.1.4-2 [22.6 kB] Get: 60 http://deb.debian.org/debian forky/main arm64 libsz2 arm64 1.1.4-2 [8072 B] Get: 61 http://deb.debian.org/debian forky/main arm64 libaec-dev arm64 1.1.4-2 [20.3 kB] Get: 62 http://deb.debian.org/debian forky/main arm64 libnghttp3-9 arm64 1.12.0-1 [63.6 kB] Get: 63 http://deb.debian.org/debian forky/main arm64 libngtcp2-16 arm64 1.16.0-1 [123 kB] Get: 64 http://deb.debian.org/debian forky/main arm64 libbrotli1 arm64 1.1.0-2+b7 [308 kB] Get: 65 http://deb.debian.org/debian forky/main arm64 libidn2-0 arm64 2.3.8-4 [108 kB] Get: 66 http://deb.debian.org/debian forky/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-10 [19.8 kB] Get: 67 http://deb.debian.org/debian forky/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-10 [55.0 kB] Get: 68 http://deb.debian.org/debian forky/main arm64 libldap2 arm64 2.6.10+dfsg-1 [179 kB] Get: 69 http://deb.debian.org/debian forky/main arm64 libnghttp2-14 arm64 1.64.0-1.1+b1 [71.7 kB] Get: 70 http://deb.debian.org/debian forky/main arm64 libngtcp2-crypto-ossl0 arm64 1.16.0-1 [25.7 kB] Get: 71 http://deb.debian.org/debian forky/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB] Get: 72 http://deb.debian.org/debian forky/main arm64 libp11-kit0 arm64 0.25.9-2 [420 kB] Get: 73 http://deb.debian.org/debian forky/main arm64 libtasn1-6 arm64 4.20.0-2 [47.3 kB] Get: 74 http://deb.debian.org/debian forky/main arm64 libgnutls30t64 arm64 3.8.10-3 [1384 kB] Get: 75 http://deb.debian.org/debian forky/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-3 [56.3 kB] Get: 76 http://deb.debian.org/debian forky/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Get: 77 http://deb.debian.org/debian forky/main arm64 libcurl4t64 arm64 8.17.0~rc2-1 [369 kB] Get: 78 http://deb.debian.org/debian forky/main arm64 libhdf5-310 arm64 1.14.5+repack-4 [1177 kB] Get: 79 http://deb.debian.org/debian forky/main arm64 libhdf5-cpp-310 arm64 1.14.5+repack-4 [129 kB] Get: 80 http://deb.debian.org/debian forky/main arm64 libngtcp2-crypto-gnutls8 arm64 1.16.0-1 [23.8 kB] Get: 81 http://deb.debian.org/debian forky/main arm64 libcurl3t64-gnutls arm64 8.17.0~rc2-1 [363 kB] Get: 82 http://deb.debian.org/debian forky/main arm64 libdeflate0 arm64 1.23-2 [42.4 kB] Get: 83 http://deb.debian.org/debian forky/main arm64 libhtscodecs2 arm64 1.6.1-2 [74.7 kB] Get: 84 http://deb.debian.org/debian forky/main arm64 libhts3t64 arm64 1.22.1+ds2-1 [434 kB] Get: 85 http://deb.debian.org/debian forky/main arm64 libpbcopper2.3.0 arm64 2.3.0+dfsg-4 [623 kB] Get: 86 http://deb.debian.org/debian forky/main arm64 libpbbam2.4.0 arm64 2.4.0+dfsg-2 [693 kB] Get: 87 http://deb.debian.org/debian forky/main arm64 libblasr5.3.5 arm64 5.3.5+dfsg-11 [1065 kB] Get: 88 http://deb.debian.org/debian forky/main arm64 libpbcopper-dev arm64 2.3.0+dfsg-4 [984 kB] Get: 89 http://deb.debian.org/debian forky/main arm64 libpbdata-dev arm64 5.3.5+dfsg-11 [40.9 kB] Get: 90 http://deb.debian.org/debian forky/main arm64 libgfortran5 arm64 15.2.0-7 [371 kB] Get: 91 http://deb.debian.org/debian forky/main arm64 libhdf5-fortran-310 arm64 1.14.5+repack-4 [114 kB] Get: 92 http://deb.debian.org/debian forky/main arm64 libhdf5-hl-310 arm64 1.14.5+repack-4 [68.4 kB] Get: 93 http://deb.debian.org/debian forky/main arm64 libhdf5-hl-fortran-310 arm64 1.14.5+repack-4 [44.5 kB] Get: 94 http://deb.debian.org/debian forky/main arm64 libhdf5-hl-cpp-310 arm64 1.14.5+repack-4 [24.9 kB] Get: 95 http://deb.debian.org/debian forky/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Get: 96 http://deb.debian.org/debian forky/main arm64 libjpeg62-turbo arm64 1:2.1.5-4 [173 kB] Get: 97 http://deb.debian.org/debian forky/main arm64 libjpeg62-turbo-dev arm64 1:2.1.5-4 [293 kB] Get: 98 http://deb.debian.org/debian forky/main arm64 libjpeg-dev arm64 1:2.1.5-4 [72.2 kB] Get: 99 http://deb.debian.org/debian forky/main arm64 libbrotli-dev arm64 1.1.0-2+b7 [308 kB] Get: 100 http://deb.debian.org/debian forky/main arm64 libevent-2.1-7t64 arm64 2.1.12-stable-10+b1 [170 kB] Get: 101 http://deb.debian.org/debian forky/main arm64 libunbound8 arm64 1.24.1-1 [559 kB] Get: 102 http://deb.debian.org/debian forky/main arm64 libgnutls-dane0t64 arm64 3.8.10-3 [456 kB] Get: 103 http://deb.debian.org/debian forky/main arm64 libgnutls-openssl27t64 arm64 3.8.10-3 [455 kB] Get: 104 http://deb.debian.org/debian forky/main arm64 libidn2-dev arm64 2.3.8-4 [102 kB] Get: 105 http://deb.debian.org/debian forky/main arm64 libp11-kit-dev arm64 0.25.9-2 [220 kB] Get: 106 http://deb.debian.org/debian forky/main arm64 libtasn1-6-dev arm64 4.20.0-2 [96.7 kB] Get: 107 http://deb.debian.org/debian forky/main arm64 libgmpxx4ldbl arm64 2:6.3.0+dfsg-5 [329 kB] Get: 108 http://deb.debian.org/debian forky/main arm64 libgmp-dev arm64 2:6.3.0+dfsg-5 [621 kB] Get: 109 http://deb.debian.org/debian forky/main arm64 nettle-dev arm64 3.10.2-1 [1319 kB] Get: 110 http://deb.debian.org/debian forky/main arm64 libgnutls28-dev arm64 3.8.10-3 [1414 kB] Get: 111 http://deb.debian.org/debian forky/main arm64 libkrb5-dev arm64 1.21.3-5 [16.1 kB] Get: 112 http://deb.debian.org/debian forky/main arm64 libldap-dev arm64 2.6.10+dfsg-1 [305 kB] Get: 113 http://deb.debian.org/debian forky/main arm64 libpkgconf3 arm64 1.8.1-4 [35.3 kB] Get: 114 http://deb.debian.org/debian forky/main arm64 pkgconf-bin arm64 1.8.1-4 [29.6 kB] Get: 115 http://deb.debian.org/debian forky/main arm64 pkgconf arm64 1.8.1-4 [26.1 kB] Get: 116 http://deb.debian.org/debian forky/main arm64 libnghttp2-dev arm64 1.64.0-1.1+b1 [112 kB] Get: 117 http://deb.debian.org/debian forky/main arm64 libnghttp3-dev arm64 1.12.0-1 [91.6 kB] Get: 118 http://deb.debian.org/debian forky/main arm64 libngtcp2-crypto-gnutls-dev arm64 1.16.0-1 [24.6 kB] Get: 119 http://deb.debian.org/debian forky/main arm64 libngtcp2-dev arm64 1.16.0-1 [183 kB] Get: 120 http://deb.debian.org/debian forky/main arm64 libpsl-dev arm64 0.21.2-1.1+b1 [77.9 kB] Get: 121 http://deb.debian.org/debian forky/main arm64 librtmp-dev arm64 2.4+20151223.gitfa8646d.1-3 [173 kB] Get: 122 http://deb.debian.org/debian forky/main arm64 libssl-dev arm64 3.5.4-1 [3377 kB] Get: 123 http://deb.debian.org/debian forky/main arm64 libssh2-1-dev arm64 1.11.1-1 [388 kB] Get: 124 http://deb.debian.org/debian forky/main arm64 libzstd-dev arm64 1.5.7+dfsg-2 [330 kB] Get: 125 http://deb.debian.org/debian forky/main arm64 libcurl4-gnutls-dev arm64 8.17.0~rc2-1 [498 kB] Get: 126 http://deb.debian.org/debian forky/main arm64 libhdf5-dev arm64 1.14.5+repack-4 [3219 kB] Get: 127 http://deb.debian.org/debian forky/main arm64 libbz2-dev arm64 1.0.8-6 [31.9 kB] Get: 128 http://deb.debian.org/debian forky/main arm64 libdeflate-dev arm64 1.23-2 [51.3 kB] Get: 129 http://deb.debian.org/debian forky/main arm64 liblzma-dev arm64 5.8.1-2 [344 kB] Get: 130 http://deb.debian.org/debian forky/main arm64 libhts-dev arm64 1.22.1+ds2-1 [1684 kB] Get: 131 http://deb.debian.org/debian forky/main arm64 libpbbam-dev arm64 2.4.0+dfsg-2 [88.2 kB] Get: 132 http://deb.debian.org/debian forky/main arm64 libblasr-dev arm64 5.3.5+dfsg-11 [2093 kB] Get: 133 http://deb.debian.org/debian forky/main arm64 libgcc-14-dev arm64 14.3.0-10 [2366 kB] Get: 134 http://deb.debian.org/debian forky/main arm64 libstdc++-14-dev arm64 14.3.0-10 [2568 kB] Get: 135 http://deb.debian.org/debian forky/main arm64 libboost1.83-dev arm64 1.83.0-5 [10.6 MB] Get: 136 http://deb.debian.org/debian forky/main arm64 libboost-dev arm64 1.83.0.2+b2 [3828 B] Get: 137 http://deb.debian.org/debian forky/main arm64 libpbihdf-dev arm64 5.3.5+dfsg-11 [47.4 kB] Get: 138 http://deb.debian.org/debian forky/main arm64 libpbseq-dev arm64 5.3.5+dfsg-11 [5148 B] Get: 139 http://deb.debian.org/debian forky/main arm64 libtclap-dev arm64 1.2.5-1+b2 [3360 kB] Fetched 68.3 MB in 1s (74.9 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19971 files and directories currently installed.) Preparing to unpack .../libexpat1_2.7.3-1_arm64.deb ... Unpacking libexpat1:arm64 (2.7.3-1) ... Selecting previously unselected package libpython3.13-minimal:arm64. Preparing to unpack .../libpython3.13-minimal_3.13.9-1_arm64.deb ... Unpacking libpython3.13-minimal:arm64 (3.13.9-1) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../python3.13-minimal_3.13.9-1_arm64.deb ... Unpacking python3.13-minimal (3.13.9-1) ... Setting up libpython3.13-minimal:arm64 (3.13.9-1) ... Setting up libexpat1:arm64 (2.7.3-1) ... Setting up python3.13-minimal (3.13.9-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20305 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.13.7-1_arm64.deb ... Unpacking python3-minimal (3.13.7-1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_14.0.0_all.deb ... Unpacking media-types (14.0.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.5_all.deb ... Unpacking netbase (6.5) ... Selecting previously unselected package tzdata. Preparing to unpack .../3-tzdata_2025b-5_all.deb ... Unpacking tzdata (2025b-5) ... Selecting previously unselected package libffi8:arm64. Preparing to unpack .../4-libffi8_3.5.2-2_arm64.deb ... Unpacking libffi8:arm64 (3.5.2-2) ... Selecting previously unselected package readline-common. Preparing to unpack .../5-readline-common_8.3-3_all.deb ... Unpacking readline-common (8.3-3) ... Selecting previously unselected package libreadline8t64:arm64. Preparing to unpack .../6-libreadline8t64_8.3-3_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.3-3) ... Selecting previously unselected package libpython3.13-stdlib:arm64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.9-1_arm64.deb ... Unpacking libpython3.13-stdlib:arm64 (3.13.9-1) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.9-1_arm64.deb ... Unpacking python3.13 (3.13.9-1) ... Selecting previously unselected package libpython3-stdlib:arm64. Preparing to unpack .../9-libpython3-stdlib_3.13.7-1_arm64.deb ... Unpacking libpython3-stdlib:arm64 (3.13.7-1) ... Setting up python3-minimal (3.13.7-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21320 files and directories currently installed.) Preparing to unpack .../000-python3_3.13.7-1_arm64.deb ... Unpacking python3 (3.13.7-1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../001-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../002-libmagic-mgc_1%3a5.46-5_arm64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../003-libmagic1t64_1%3a5.46-5_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../004-file_1%3a5.46-5_arm64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../005-gettext-base_0.23.1-2+b1_arm64.deb ... Unpacking gettext-base (0.23.1-2+b1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../006-libuchardet0_0.0.8-2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-2) ... Selecting previously unselected package groff-base. Preparing to unpack .../007-groff-base_1.23.0-9_arm64.deb ... Unpacking groff-base (1.23.0-9) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../008-bsdextrautils_2.41.2-4_arm64.deb ... Unpacking bsdextrautils (2.41.2-4) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../009-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../010-man-db_2.13.1-1_arm64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../011-m4_1.4.20-2_arm64.deb ... Unpacking m4 (1.4.20-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../012-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../013-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... 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Selecting previously unselected package libstdc++-14-dev:arm64. Preparing to unpack .../120-libstdc++-14-dev_14.3.0-10_arm64.deb ... Unpacking libstdc++-14-dev:arm64 (14.3.0-10) ... Selecting previously unselected package libboost1.83-dev:arm64. Preparing to unpack .../121-libboost1.83-dev_1.83.0-5_arm64.deb ... Unpacking libboost1.83-dev:arm64 (1.83.0-5) ... Selecting previously unselected package libboost-dev:arm64. Preparing to unpack .../122-libboost-dev_1.83.0.2+b2_arm64.deb ... Unpacking libboost-dev:arm64 (1.83.0.2+b2) ... Selecting previously unselected package libpbihdf-dev:arm64. Preparing to unpack .../123-libpbihdf-dev_5.3.5+dfsg-11_arm64.deb ... Unpacking libpbihdf-dev:arm64 (5.3.5+dfsg-11) ... Selecting previously unselected package libpbseq-dev:arm64. Preparing to unpack .../124-libpbseq-dev_5.3.5+dfsg-11_arm64.deb ... Unpacking libpbseq-dev:arm64 (5.3.5+dfsg-11) ... Selecting previously unselected package libtclap-dev. 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Setting up file (1:5.46-5) ... Setting up googletest (1.17.0-1) ... Setting up libaec0:arm64 (1.1.4-2) ... Setting up libelf1t64:arm64 (0.193-3) ... Setting up libkrb5support0:arm64 (1.21.3-5) ... Setting up libsasl2-modules-db:arm64 (2.1.28+dfsg1-10) ... Setting up tzdata (2025b-5) ... Current default time zone: 'Etc/UTC' Local time is now: Fri Dec 4 03:02:58 UTC 2026. Universal Time is now: Fri Dec 4 03:02:58 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20240727.1) ... Setting up libunbound8:arm64 (1.24.1-1) ... Setting up libpkgconf3:arm64 (1.8.1-4) ... Setting up libgmpxx4ldbl:arm64 (2:6.3.0+dfsg-5) ... Setting up libjpeg62-turbo:arm64 (1:2.1.5-4) ... Setting up libjpeg62-turbo-dev:arm64 (1:2.1.5-4) ... Setting up comerr-dev:arm64 (2.1-1.47.2-3+b3) ... Setting up libunistring5:arm64 (1.3-2) ... Setting up libssl-dev:arm64 (3.5.4-1) ... Setting up autopoint (0.23.1-2) ... Setting up pkgconf-bin (1.8.1-4) ... Setting up libk5crypto3:arm64 (1.21.3-5) ... Setting up libsasl2-2:arm64 (2.1.28+dfsg1-10) ... Setting up libgfortran5:arm64 (15.2.0-7) ... Setting up autoconf (2.72-3.1) ... Setting up libtclap-dev (1.2.5-1+b2) ... Setting up libnghttp3-9:arm64 (1.12.0-1) ... Setting up libnghttp3-dev:arm64 (1.12.0-1) ... Setting up liblzma-dev:arm64 (5.8.1-2) ... Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libffi8:arm64 (3.5.2-2) ... Setting up dwz (0.16-2) ... Setting up sensible-utils (0.0.26) ... Setting up libuchardet0:arm64 (0.0.8-2) ... Setting up libtasn1-6:arm64 (4.20.0-2) ... Setting up netbase (6.5) ... Setting up libngtcp2-16:arm64 (1.16.0-1) ... Setting up libkrb5-3:arm64 (1.21.3-5) ... Setting up libssh2-1t64:arm64 (1.11.1-1) ... Setting up libgcc-14-dev:arm64 (14.3.0-10) ... Setting up libtasn1-6-dev:arm64 (4.20.0-2) ... Setting up libdeflate-dev:arm64 (1.23-2) ... Setting up libstdc++-14-dev:arm64 (14.3.0-10) ... Setting up readline-common (8.3-3) ... Setting up libldap2:arm64 (2.6.10+dfsg-1) ... Setting up libbrotli-dev:arm64 (1.1.0-2+b7) ... Setting up libsz2:arm64 (1.1.4-2) ... Setting up libpbcopper2.3.0:arm64 (2.3.0+dfsg-4) ... Setting up libbz2-dev:arm64 (1.0.8-6) ... Setting up automake (1:1.18.1-2) ... update-alternatives: using /usr/bin/automake-1.18 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up libboost1.83-dev:arm64 (1.83.0-5) ... Setting up gettext (0.23.1-2+b1) ... Setting up libgmp-dev:arm64 (2:6.3.0+dfsg-5) ... Setting up nettle-dev:arm64 (3.10.2-1) ... Setting up libtool (2.5.4-7) ... Setting up libaec-dev:arm64 (1.1.4-2) ... Setting up libjpeg-dev:arm64 (1:2.1.5-4) ... Setting up libidn2-0:arm64 (2.3.8-4) ... Setting up libngtcp2-dev:arm64 (1.16.0-1) ... Setting up pkgconf:arm64 (1.8.1-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (21) ... Setting up libldap-dev:arm64 (2.6.10+dfsg-1) ... Setting up libp11-kit0:arm64 (0.25.9-2) ... Setting up libgssapi-krb5-2:arm64 (1.21.3-5) ... Setting up libpbcopper-dev:arm64 (2.3.0+dfsg-4) ... Setting up libssh2-1-dev:arm64 (1.11.1-1) ... Setting up libidn2-dev:arm64 (2.3.8-4) ... Setting up libngtcp2-crypto-ossl0:arm64 (1.16.0-1) ... Setting up libreadline8t64:arm64 (8.3-3) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up groff-base (1.23.0-9) ... Setting up libboost-dev:arm64 (1.83.0.2+b2) ... Setting up libpython3.13-stdlib:arm64 (3.13.9-1) ... Setting up libp11-kit-dev:arm64 (0.25.9-2) ... Setting up libpython3-stdlib:arm64 (3.13.7-1) ... Setting up libgnutls30t64:arm64 (3.8.10-3) ... Setting up libgnutls-openssl27t64:arm64 (3.8.10-3) ... Setting up libnghttp2-dev:arm64 (1.64.0-1.1+b1) ... Setting up python3.13 (3.13.9-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpsl5t64:arm64 (0.21.2-1.1+b1) ... Setting up libpbdata-dev:arm64 (5.3.5+dfsg-11) ... Setting up python3 (3.13.7-1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libpsl-dev:arm64 (0.21.2-1.1+b1) ... Setting up libgnutls-dane0t64:arm64 (3.8.10-3) ... Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-3) ... Setting up libgssrpc4t64:arm64 (1.21.3-5) ... Setting up libngtcp2-crypto-gnutls8:arm64 (1.16.0-1) ... Setting up libkadm5clnt-mit12:arm64 (1.21.3-5) ... Setting up libgnutls28-dev:arm64 (3.8.10-3) ... Setting up libcurl4t64:arm64 (8.17.0~rc2-1) ... Setting up libkdb5-10t64:arm64 (1.21.3-5) ... Setting up libcurl3t64-gnutls:arm64 (8.17.0~rc2-1) ... Setting up debhelper (13.28) ... Setting up libngtcp2-crypto-gnutls-dev:arm64 (1.16.0-1) ... Setting up librtmp-dev:arm64 (2.4+20151223.gitfa8646d.1-3) ... Setting up libhdf5-310:arm64 (1.14.5+repack-4) ... Setting up libkadm5srv-mit12:arm64 (1.21.3-5) ... Setting up libhts3t64:arm64 (1.22.1+ds2-1) ... Setting up libhdf5-fortran-310:arm64 (1.14.5+repack-4) ... Setting up krb5-multidev:arm64 (1.21.3-5) ... Setting up libhdf5-cpp-310:arm64 (1.14.5+repack-4) ... Setting up libhdf5-hl-310:arm64 (1.14.5+repack-4) ... Setting up libpbbam2.4.0:arm64 (2.4.0+dfsg-2) ... Setting up libblasr5.3.5:arm64 (5.3.5+dfsg-11) ... Setting up libkrb5-dev:arm64 (1.21.3-5) ... Setting up libhdf5-hl-cpp-310:arm64 (1.14.5+repack-4) ... Setting up libhdf5-hl-fortran-310:arm64 (1.14.5+repack-4) ... Setting up libcurl4-gnutls-dev:arm64 (8.17.0~rc2-1) ... Setting up libhdf5-dev (1.14.5+repack-4) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/aarch64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up libpbihdf-dev:arm64 (5.3.5+dfsg-11) ... Setting up libhts-dev:arm64 (1.22.1+ds2-1) ... Setting up libpbbam-dev:arm64 (2.4.0+dfsg-2) ... Setting up libblasr-dev:arm64 (5.3.5+dfsg-11) ... Setting up libpbseq-dev:arm64 (5.3.5+dfsg-11) ... Processing triggers for libc-bin (2.41-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../pbdagcon_0.3+git20180411.c14c422+dfsg-9_source.changes dpkg-buildpackage: info: source package pbdagcon dpkg-buildpackage: info: source version 0.3+git20180411.c14c422+dfsg-9 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_auto_clean make -j12 clean make[1]: Entering directory '/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg' make -C src/cpp clean make[2]: Entering directory '/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/src/cpp' rm -f *.d rm -f *.o rm -f pbdagcon rm -f dazcon make[2]: Leaving directory '/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/src/cpp' make -C test/cpp clean make[2]: Entering directory '/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/test/cpp' rm -f .//*.o rm -f *.o rm -f test_* make[2]: Leaving directory '/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/test/cpp' make[1]: Leaving directory '/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg' ./configure.py --shared uname -s uname='Linux' writing to '/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/defines.mk' """ DALIGNER_INCLUDE ?= ${DALIGNER_SRC} DALIGNER_SRC ?= /build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/daligner-include DAZZ_DB_INCLUDE ?= ${DAZZ_DB_SRC} DAZZ_DB_SRC ?= /build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include GTEST_INCLUDE ?= /usr/src/googletest/googletest/include GTEST_SRC ?= /usr/src/googletest/googletest/src HDF5_LIB ?= /usr/lib/aarch64-linux-gnu/hdf5/serial HDF5_LIBFLAGS ?= -lhdf5_cpp -lhdf5 HTSLIB_LIBS ?= -lhts LIBBLASR_INCLUDE ?= /usr/include/pbseq/alignment LIBBLASR_LIBFLAGS ?= -lblasr LIBPBDATA_INCLUDE ?= /usr/include/pbseq/pbdata LIBPBIHDF_INCLUDE ?= /usr/include/pbseq/hdf PBBAM_INCLUDE ?= /usr/include/pbseq PBBAM_LIBFLAGS ?= -lpbbam PTHREAD_LIBFLAGS ?= -lpthread ZLIB_LIBFLAGS ?= -lz LDLIBS+=-lrt """ make[1]: Leaving directory '/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg' dh_auto_build make -j12 INSTALL="install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg' make -C src/cpp make[2]: Entering directory '/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/src/cpp' g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wall -Wuninitialized -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -MMD -MP -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/daligner-include -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -I/usr/include/pbseq -isystem.//third-party -c -o Alignment.o Alignment.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wall -Wuninitialized -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -MMD -MP -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/daligner-include -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -I/usr/include/pbseq -isystem.//third-party -c -o AlnGraphBoost.o AlnGraphBoost.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wall -Wuninitialized -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -MMD -MP -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/daligner-include -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -I/usr/include/pbseq -isystem.//third-party -c -o BlasrM5AlnProvider.o BlasrM5AlnProvider.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wall -Wuninitialized -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -MMD -MP -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/daligner-include -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -I/usr/include/pbseq -isystem.//third-party -c -o main.o main.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wall -Wuninitialized -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -MMD -MP -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/daligner-include -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -I/usr/include/pbseq -isystem.//third-party -c -o SimpleAligner.o SimpleAligner.cpp cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wall -Wextra -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -MMD -MP -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/daligner-include -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -I/usr/include/pbseq -isystem.//third-party -c -o DB.o /build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include/DB.c cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wall -Wextra -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -MMD -MP -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/daligner-include -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -I/usr/include/pbseq -isystem.//third-party -c -o QV.o /build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include/QV.c cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wall -Wextra -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -MMD -MP -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/daligner-include -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -I/usr/include/pbseq -isystem.//third-party -c -o align.o /build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/daligner-include/align.c g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wall -Wuninitialized -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -MMD -MP -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/daligner-include -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -I/usr/include/pbseq -isystem.//third-party -c -o DazAlnProvider.o DazAlnProvider.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wall -Wuninitialized -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -MMD -MP -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/daligner-include -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -I/usr/include/pbseq -isystem.//third-party -c -o dazcon.o dazcon.cpp /build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include/DB.c: In function 'Open_QVs': /build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include/DB.c:2415:16: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 2415 | (void) fscanf(istub,DB_NFILE,&nfiles); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include/DB.c:2419:20: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 2419 | { (void) fscanf(istub,DB_FDATA,&last,fname,prolog); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include/DB.c:2424:20: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 2424 | { (void) fscanf(istub,DB_FDATA,&last,fname,prolog); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o dazcon Alignment.o AlnGraphBoost.o DB.o QV.o align.o DazAlnProvider.o dazcon.o -Wl,-z,relro -L /usr/lib/aarch64-linux-gnu/hdf5/serial -lrt -lblasr -lpbbam -lhdf5_cpp -lhdf5 -lhts -lz -lpthread g++ -o pbdagcon Alignment.o AlnGraphBoost.o BlasrM5AlnProvider.o main.o SimpleAligner.o -Wl,-z,relro -L /usr/lib/aarch64-linux-gnu/hdf5/serial -lrt -lblasr -lpbbam -lhdf5_cpp -lhdf5 -lhts -lz -lpthread make[2]: Leaving directory '/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/src/cpp' make[1]: Leaving directory '/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg' dh_auto_test make -j12 check make[1]: Entering directory '/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg' make -C src/cpp make[2]: Entering directory '/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/src/cpp' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/src/cpp' make -C test/cpp make[2]: Entering directory '/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/test/cpp' g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -g -Wall -Wextra -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -I. -I./ -I.//../../src/cpp -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/daligner-include -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -I/usr/include/pbseq -I/usr/src/googletest/googletest/include -Ithird-party -isystem /usr/src/googletest/googletest/include -isystem /usr/src/googletest/googletest/src/.. -c -o gtest-all.o /usr/src/googletest/googletest/src/gtest-all.cc g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -g -Wall -Wextra -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -I. -I./ -I.//../../src/cpp -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/daligner-include -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -I/usr/include/pbseq -I/usr/src/googletest/googletest/include -Ithird-party -isystem /usr/src/googletest/googletest/include -isystem /usr/src/googletest/googletest/src/.. -c -o gtest_main.o /usr/src/googletest/googletest/src/gtest_main.cc g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I. -I./ -I.//../../src/cpp -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/daligner-include -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -I/usr/include/pbseq -I/usr/src/googletest/googletest/include -Ithird-party -c -o AlnGraphBoost.o .//../../src/cpp/AlnGraphBoost.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I. -I./ -I.//../../src/cpp -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/daligner-include -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -I/usr/include/pbseq -I/usr/src/googletest/googletest/include -Ithird-party -c -o Alignment.o .//../../src/cpp/Alignment.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I. -I./ -I.//../../src/cpp -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/daligner-include -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -I/usr/include/pbseq -I/usr/src/googletest/googletest/include -Ithird-party -c -o SimpleAligner.o .//../../src/cpp/SimpleAligner.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I. -I./ -I.//../../src/cpp -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/daligner-include -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -I/usr/include/pbseq -I/usr/src/googletest/googletest/include -Ithird-party -c -o AlnGraphBoostTest.o AlnGraphBoostTest.cpp mkdir xml g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I. -I./ -I.//../../src/cpp -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/daligner-include -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -I/usr/include/pbseq -I/usr/src/googletest/googletest/include -Ithird-party -c -o AlignmentTest.o AlignmentTest.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I. -I./ -I.//../../src/cpp -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/daligner-include -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -I/usr/include/pbseq -I/usr/src/googletest/googletest/include -Ithird-party -c -o SimpleAlignerTest.o SimpleAlignerTest.cpp cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I. -I./ -I.//../../src/cpp -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/daligner-include -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -I/usr/include/pbseq -I/usr/src/googletest/googletest/include -Ithird-party -c -o DB.o /build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include/DB.c cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I. -I./ -I.//../../src/cpp -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/daligner-include -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -I/usr/include/pbseq -I/usr/src/googletest/googletest/include -Ithird-party -c -o QV.o /build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include/QV.c cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I. -I./ -I.//../../src/cpp -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/daligner-include -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -I/usr/include/pbseq -I/usr/src/googletest/googletest/include -Ithird-party -c -o align.o /build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/daligner-include/align.c g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I. -I./ -I.//../../src/cpp -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/daligner-include -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -I/usr/include/pbseq -I/usr/src/googletest/googletest/include -Ithird-party -c -o DazAlnProvider.o .//../../src/cpp/DazAlnProvider.cpp /build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include/DB.c: In function 'Open_QVs': /build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include/DB.c:2415:16: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 2415 | (void) fscanf(istub,DB_NFILE,&nfiles); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include/DB.c:2419:20: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 2419 | { (void) fscanf(istub,DB_FDATA,&last,fname,prolog); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include/DB.c:2424:20: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 2424 | { (void) fscanf(istub,DB_FDATA,&last,fname,prolog); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I. -I./ -I.//../../src/cpp -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/daligner-include -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -I/usr/include/pbseq -I/usr/src/googletest/googletest/include -Ithird-party -c -o TargetHitTest.o TargetHitTest.cpp g++ -o test-alngraph gtest-all.o gtest_main.o AlnGraphBoost.o Alignment.o SimpleAligner.o AlnGraphBoostTest.o -Wl,-z,relro -L /usr/lib/aarch64-linux-gnu/hdf5/serial -lrt -lblasr -lpbbam -lhdf5_cpp -lhdf5 -lhts -lz -lpthread g++ -o test-alignment gtest-all.o gtest_main.o AlnGraphBoost.o Alignment.o SimpleAligner.o AlignmentTest.o -Wl,-z,relro -L /usr/lib/aarch64-linux-gnu/hdf5/serial -lrt -lblasr -lpbbam -lhdf5_cpp -lhdf5 -lhts -lz -lpthread g++ -o test-simple_aligner gtest-all.o gtest_main.o AlnGraphBoost.o Alignment.o SimpleAligner.o SimpleAlignerTest.o -Wl,-z,relro -L /usr/lib/aarch64-linux-gnu/hdf5/serial -lrt -lblasr -lpbbam -lhdf5_cpp -lhdf5 -lhts -lz -lpthread g++ -o test-target_hit gtest-all.o gtest_main.o DB.o QV.o align.o Alignment.o DazAlnProvider.o TargetHitTest.o -Wl,-z,relro -L /usr/lib/aarch64-linux-gnu/hdf5/serial -lrt -lblasr -lpbbam -lhdf5_cpp -lhdf5 -lhts -lz -lpthread LD_LIBRARY_PATH=::::/usr/lib/aarch64-linux-gnu/hdf5/serial::: PBDAGCON_TEST_DATA_DIR=./ ./test-alngraph --gtest_output=xml:xml/test-alngraph.xml Running main() from /usr/src/googletest/googletest/src/gtest_main.cc [==========] Running 2 tests from 1 test suite. [----------] Global test environment set-up. [----------] 2 tests from AlnGraphBoostTest [ RUN ] AlnGraphBoostTest.RawConsensus [ OK ] AlnGraphBoostTest.RawConsensus (0 ms) [ RUN ] AlnGraphBoostTest.DanglingNodes [ OK ] AlnGraphBoostTest.DanglingNodes (0 ms) [----------] 2 tests from AlnGraphBoostTest (0 ms total) [----------] Global test environment tear-down [==========] 2 tests from 1 test suite ran. (0 ms total) [ PASSED ] 2 tests. LD_LIBRARY_PATH=::::/usr/lib/aarch64-linux-gnu/hdf5/serial::: PBDAGCON_TEST_DATA_DIR=./ ./test-target_hit --gtest_output=xml:xml/test-target_hit.xml Running main() from /usr/src/googletest/googletest/src/gtest_main.cc [==========] Running 3 tests from 1 test suite. [----------] Global test environment set-up. [----------] 3 tests from TargetHitTest [ RUN ] TargetHitTest.single_overlap_perfect [ OK ] TargetHitTest.single_overlap_perfect (0 ms) [ RUN ] TargetHitTest.single_overlap_inaccurate [ OK ] TargetHitTest.single_overlap_inaccurate (0 ms) [ RUN ] TargetHitTest.multi_overlap_inaccurate [ OK ] TargetHitTest.multi_overlap_inaccurate (0 ms) [----------] 3 tests from TargetHitTest (0 ms total) [----------] Global test environment tear-down [==========] 3 tests from 1 test suite ran. (0 ms total) [ PASSED ] 3 tests. LD_LIBRARY_PATH=::::/usr/lib/aarch64-linux-gnu/hdf5/serial::: PBDAGCON_TEST_DATA_DIR=./ ./test-simple_aligner --gtest_output=xml:xml/test-simple_aligner.xml Running main() from /usr/src/googletest/googletest/src/gtest_main.cc [==========] Running 1 test from 1 test suite. [----------] Global test environment set-up. [----------] 1 test from SimpleAligner [ RUN ] SimpleAligner.align [ OK ] SimpleAligner.align (0 ms) [----------] 1 test from SimpleAligner (0 ms total) [----------] Global test environment tear-down [==========] 1 test from 1 test suite ran. (1 ms total) [ PASSED ] 1 test. LD_LIBRARY_PATH=::::/usr/lib/aarch64-linux-gnu/hdf5/serial::: PBDAGCON_TEST_DATA_DIR=./ ./test-alignment --gtest_output=xml:xml/test-alignment.xml Running main() from /usr/src/googletest/googletest/src/gtest_main.cc [==========] Running 4 tests from 1 test suite. [----------] Global test environment set-up. [----------] 4 tests from Alignment [ RUN ] Alignment.Normalize [ OK ] Alignment.Normalize (0 ms) [ RUN ] Alignment.ParseBasic [ OK ] Alignment.ParseBasic (0 ms) [ RUN ] Alignment.ParseQuery [ OK ] Alignment.ParseQuery (0 ms) [ RUN ] Alignment.Trim [ OK ] Alignment.Trim (0 ms) [----------] 4 tests from Alignment (0 ms total) [----------] Global test environment tear-down [==========] 4 tests from 1 test suite ran. (6 ms total) [ PASSED ] 4 tests. make[2]: Leaving directory '/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/test/cpp' make[1]: Leaving directory '/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/pbdagcon/ dh_install dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'pbdagcon-dbgsym' in '../pbdagcon-dbgsym_0.3+git20180411.c14c422+dfsg-9_arm64.deb'. dpkg-deb: building package 'pbdagcon' in '../pbdagcon_0.3+git20180411.c14c422+dfsg-9_arm64.deb'. dpkg-genbuildinfo --build=binary -O../pbdagcon_0.3+git20180411.c14c422+dfsg-9_arm64.buildinfo dpkg-genchanges --build=binary -O../pbdagcon_0.3+git20180411.c14c422+dfsg-9_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2777547 and its subdirectories I: Current time: Thu Dec 3 15:04:11 -12 2026 I: pbuilder-time-stamp: 1796353451 Fri Dec 4 03:04:11 UTC 2026 I: Signing ./b1/pbdagcon_0.3+git20180411.c14c422+dfsg-9_arm64.buildinfo as pbdagcon_0.3+git20180411.c14c422+dfsg-9_arm64.buildinfo.asc Fri Dec 4 03:04:11 UTC 2026 I: Signed ./b1/pbdagcon_0.3+git20180411.c14c422+dfsg-9_arm64.buildinfo as ./b1/pbdagcon_0.3+git20180411.c14c422+dfsg-9_arm64.buildinfo.asc Fri Dec 4 03:04:11 UTC 2026 - build #1 for pbdagcon/forky/arm64 on codethink03-arm64 done. Starting cleanup. All cleanup done. Fri Dec 4 03:04:11 UTC 2026 - reproducible_build.sh stopped running as /tmp/jenkins-script-hYWkFEKN, removing. /srv/reproducible-results/rbuild-debian/r-b-build.zQTnpsm6: total 16 drwxrwxr-x 2 jenkins jenkins 4096 Oct 31 20:41 b1 drwxrwxr-x 2 jenkins jenkins 4096 Oct 31 20:39 b2 -rw-rw-r-- 1 jenkins jenkins 2538 Sep 23 2024 pbdagcon_0.3+git20180411.c14c422+dfsg-9.dsc -rw------- 1 jenkins jenkins 3768 Oct 31 20:39 rbuildlog.ohfr68k /srv/reproducible-results/rbuild-debian/r-b-build.zQTnpsm6/b1: total 6020 -rw-r--r-- 1 jenkins jenkins 83869 Oct 31 20:41 build.log -rw-r--r-- 1 jenkins jenkins 5628928 Oct 31 20:41 pbdagcon-dbgsym_0.3+git20180411.c14c422+dfsg-9_arm64.deb -rw-r--r-- 1 jenkins jenkins 58140 Oct 31 20:41 pbdagcon_0.3+git20180411.c14c422+dfsg-9.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2538 Oct 31 20:41 pbdagcon_0.3+git20180411.c14c422+dfsg-9.dsc -rw-r--r-- 1 jenkins jenkins 8480 Oct 31 20:41 pbdagcon_0.3+git20180411.c14c422+dfsg-9_arm64.buildinfo -rw-rw-r-- 1 jenkins jenkins 9362 Oct 31 20:41 pbdagcon_0.3+git20180411.c14c422+dfsg-9_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1775 Oct 31 20:41 pbdagcon_0.3+git20180411.c14c422+dfsg-9_arm64.changes -rw-r--r-- 1 jenkins jenkins 346040 Oct 31 20:41 pbdagcon_0.3+git20180411.c14c422+dfsg-9_arm64.deb -rw-r--r-- 1 jenkins jenkins 1630 Oct 31 20:41 pbdagcon_0.3+git20180411.c14c422+dfsg-9_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.zQTnpsm6/b2: total 0 Fri Oct 31 20:41:12 UTC 2025 I: Deleting $TMPDIR on codethink03-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Dec 3 15:02:32 -12 2026 I: pbuilder-time-stamp: 1796353352 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [pbdagcon_0.3+git20180411.c14c422+dfsg-9.dsc] I: copying [./pbdagcon_0.3+git20180411.c14c422+dfsg.orig.tar.xz] I: copying [./pbdagcon_0.3+git20180411.c14c422+dfsg-9.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./pbdagcon_0.3+git20180411.c14c422+dfsg-9.dsc: no acceptable signature found dpkg-source: info: extracting pbdagcon in pbdagcon-0.3+git20180411.c14c422+dfsg dpkg-source: info: unpacking pbdagcon_0.3+git20180411.c14c422+dfsg.orig.tar.xz dpkg-source: info: unpacking pbdagcon_0.3+git20180411.c14c422+dfsg-9.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying compiler-flags.patch dpkg-source: info: applying 2to3.patch dpkg-source: info: applying libdata_libpbihdf.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2777547/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='forky' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='5748f5eaa02b4fde9cc963781c970e5d' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2777547' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.zQTnpsm6/pbuilderrc_0QAT --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.zQTnpsm6/b1 --logfile b1/build.log pbdagcon_0.3+git20180411.c14c422+dfsg-9.dsc' SUDO_GID='109' SUDO_HOME='/var/lib/jenkins' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink03-arm64 6.12.48+deb13-cloud-arm64 #1 SMP Debian 6.12.48-1 (2025-09-20) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2777547/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), python3:any, zlib1g-dev, libhdf5-dev, libboost-dev, libtclap-dev, libpbseq-dev (>= 5.3.5+dfsg-4~), libpbbam-dev, libpbdata-dev (>= 5.3.5+dfsg-4~), libpbcopper-dev, libpbihdf-dev (>= 5.3.5+dfsg-4~), googletest dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19971 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on python3:any. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libhdf5-dev; however: Package libhdf5-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-dev; however: Package libboost-dev is not installed. pbuilder-satisfydepends-dummy depends on libtclap-dev; however: Package libtclap-dev is not installed. pbuilder-satisfydepends-dummy depends on libpbseq-dev (>= 5.3.5+dfsg-4~); however: Package libpbseq-dev is not installed. pbuilder-satisfydepends-dummy depends on libpbbam-dev; however: Package libpbbam-dev is not installed. pbuilder-satisfydepends-dummy depends on libpbdata-dev (>= 5.3.5+dfsg-4~); however: Package libpbdata-dev is not installed. pbuilder-satisfydepends-dummy depends on libpbcopper-dev; however: Package libpbcopper-dev is not installed. pbuilder-satisfydepends-dummy depends on libpbihdf-dev (>= 5.3.5+dfsg-4~); however: Package libpbihdf-dev is not installed. pbuilder-satisfydepends-dummy depends on googletest; however: Package googletest is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} comerr-dev{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gcc-14-base{a} gettext{a} gettext-base{a} googletest{a} groff-base{a} hdf5-helpers{a} intltool-debian{a} krb5-multidev{a} libaec-dev{a} libaec0{a} libarchive-zip-perl{a} libblasr-dev{a} libblasr5.3.5{a} libboost-dev{a} libboost1.83-dev{a} libbrotli-dev{a} libbrotli1{a} libbz2-dev{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4-gnutls-dev{a} libcurl4t64{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libelf1t64{a} libevent-2.1-7t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgcc-14-dev{a} libgfortran5{a} libgmp-dev{a} libgmpxx4ldbl{a} libgnutls-dane0t64{a} libgnutls-openssl27t64{a} libgnutls28-dev{a} libgnutls30t64{a} libgssapi-krb5-2{a} libgssrpc4t64{a} libhdf5-310{a} libhdf5-cpp-310{a} libhdf5-dev{a} libhdf5-fortran-310{a} libhdf5-hl-310{a} libhdf5-hl-cpp-310{a} libhdf5-hl-fortran-310{a} libhts-dev{a} libhts3t64{a} libhtscodecs2{a} libidn2-0{a} libidn2-dev{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libk5crypto3{a} libkadm5clnt-mit12{a} libkadm5srv-mit12{a} libkdb5-10t64{a} libkeyutils1{a} libkrb5-3{a} libkrb5-dev{a} libkrb5support0{a} libldap-dev{a} libldap2{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp2-dev{a} libnghttp3-9{a} libnghttp3-dev{a} libngtcp2-16{a} libngtcp2-crypto-gnutls-dev{a} libngtcp2-crypto-gnutls8{a} libngtcp2-crypto-ossl0{a} libngtcp2-dev{a} libp11-kit-dev{a} libp11-kit0{a} libpbbam-dev{a} libpbbam2.4.0{a} libpbcopper-dev{a} libpbcopper2.3.0{a} libpbdata-dev{a} libpbihdf-dev{a} libpbseq-dev{a} libpipeline1{a} libpkgconf3{a} libpsl-dev{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} librtmp-dev{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1-dev{a} libssh2-1t64{a} libssl-dev{a} libstdc++-14-dev{a} libsz2{a} libtasn1-6{a} libtasn1-6-dev{a} libtclap-dev{a} libtool{a} libuchardet0{a} libunbound8{a} libunistring5{a} libxml2-16{a} libzstd-dev{a} m4{a} man-db{a} media-types{a} netbase{a} nettle-dev{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} python3{a} python3-minimal{a} python3.13{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules libtasn1-doc lynx publicsuffix wget 0 packages upgraded, 139 newly installed, 0 to remove and 0 not upgraded. Need to get 68.3 MB of archives. After unpacking 424 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian forky/main arm64 libexpat1 arm64 2.7.3-1 [96.5 kB] Get: 2 http://deb.debian.org/debian forky/main arm64 libpython3.13-minimal arm64 3.13.9-1 [858 kB] Get: 3 http://deb.debian.org/debian forky/main arm64 python3.13-minimal arm64 3.13.9-1 [2061 kB] Get: 4 http://deb.debian.org/debian forky/main arm64 python3-minimal arm64 3.13.7-1 [27.2 kB] Get: 5 http://deb.debian.org/debian forky/main arm64 media-types all 14.0.0 [30.8 kB] Get: 6 http://deb.debian.org/debian forky/main arm64 netbase all 6.5 [12.4 kB] Get: 7 http://deb.debian.org/debian forky/main arm64 tzdata all 2025b-5 [260 kB] Get: 8 http://deb.debian.org/debian forky/main arm64 libffi8 arm64 3.5.2-2 [21.5 kB] Get: 9 http://deb.debian.org/debian forky/main arm64 readline-common all 8.3-3 [74.8 kB] Get: 10 http://deb.debian.org/debian forky/main arm64 libreadline8t64 arm64 8.3-3 [169 kB] Get: 11 http://deb.debian.org/debian forky/main arm64 libpython3.13-stdlib arm64 3.13.9-1 [1900 kB] Get: 12 http://deb.debian.org/debian forky/main arm64 python3.13 arm64 3.13.9-1 [764 kB] Get: 13 http://deb.debian.org/debian forky/main arm64 libpython3-stdlib arm64 3.13.7-1 [10.2 kB] Get: 14 http://deb.debian.org/debian forky/main arm64 python3 arm64 3.13.7-1 [28.3 kB] Get: 15 http://deb.debian.org/debian forky/main arm64 sensible-utils all 0.0.26 [27.0 kB] Get: 16 http://deb.debian.org/debian forky/main arm64 libmagic-mgc arm64 1:5.46-5 [338 kB] Get: 17 http://deb.debian.org/debian forky/main arm64 libmagic1t64 arm64 1:5.46-5 [103 kB] Get: 18 http://deb.debian.org/debian forky/main arm64 file arm64 1:5.46-5 [43.7 kB] Get: 19 http://deb.debian.org/debian forky/main arm64 gettext-base arm64 0.23.1-2+b1 [241 kB] Get: 20 http://deb.debian.org/debian forky/main arm64 libuchardet0 arm64 0.0.8-2 [69.0 kB] Get: 21 http://deb.debian.org/debian forky/main arm64 groff-base arm64 1.23.0-9 [1130 kB] Get: 22 http://deb.debian.org/debian forky/main arm64 bsdextrautils arm64 2.41.2-4 [97.3 kB] Get: 23 http://deb.debian.org/debian forky/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 24 http://deb.debian.org/debian forky/main arm64 man-db arm64 2.13.1-1 [1453 kB] Get: 25 http://deb.debian.org/debian forky/main arm64 m4 arm64 1.4.20-2 [315 kB] Get: 26 http://deb.debian.org/debian forky/main arm64 autoconf all 2.72-3.1 [494 kB] Get: 27 http://deb.debian.org/debian forky/main arm64 autotools-dev all 20240727.1 [60.2 kB] Get: 28 http://deb.debian.org/debian forky/main arm64 automake all 1:1.18.1-2 [877 kB] Get: 29 http://deb.debian.org/debian forky/main arm64 autopoint all 0.23.1-2 [770 kB] Get: 30 http://deb.debian.org/debian forky/main arm64 libcom-err2 arm64 1.47.2-3+b3 [24.9 kB] Get: 31 http://deb.debian.org/debian forky/main arm64 comerr-dev arm64 2.1-1.47.2-3+b3 [56.9 kB] Get: 32 http://deb.debian.org/debian forky/main arm64 libdebhelper-perl all 13.28 [92.4 kB] Get: 33 http://deb.debian.org/debian forky/main arm64 libtool all 2.5.4-7 [540 kB] Get: 34 http://deb.debian.org/debian forky/main arm64 dh-autoreconf all 21 [12.2 kB] Get: 35 http://deb.debian.org/debian forky/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 36 http://deb.debian.org/debian forky/main arm64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 37 http://deb.debian.org/debian forky/main arm64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 38 http://deb.debian.org/debian forky/main arm64 libelf1t64 arm64 0.193-3 [189 kB] Get: 39 http://deb.debian.org/debian forky/main arm64 dwz arm64 0.16-2 [100 kB] Get: 40 http://deb.debian.org/debian forky/main arm64 libunistring5 arm64 1.3-2 [453 kB] Get: 41 http://deb.debian.org/debian forky/main arm64 libxml2-16 arm64 2.14.6+dfsg-0.1 [601 kB] Get: 42 http://deb.debian.org/debian forky/main arm64 gettext arm64 0.23.1-2+b1 [1612 kB] Get: 43 http://deb.debian.org/debian forky/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 44 http://deb.debian.org/debian forky/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 45 http://deb.debian.org/debian forky/main arm64 debhelper all 13.28 [941 kB] Get: 46 http://deb.debian.org/debian forky/main arm64 gcc-14-base arm64 14.3.0-10 [52.4 kB] Get: 47 http://deb.debian.org/debian forky/main arm64 googletest all 1.17.0-1 [522 kB] Get: 48 http://deb.debian.org/debian forky/main arm64 hdf5-helpers arm64 1.14.5+repack-4 [26.7 kB] Get: 49 http://deb.debian.org/debian forky/main arm64 libkrb5support0 arm64 1.21.3-5 [32.4 kB] Get: 50 http://deb.debian.org/debian forky/main arm64 libk5crypto3 arm64 1.21.3-5 [81.2 kB] Get: 51 http://deb.debian.org/debian forky/main arm64 libkeyutils1 arm64 1.6.3-6 [9716 B] Get: 52 http://deb.debian.org/debian forky/main arm64 libkrb5-3 arm64 1.21.3-5 [308 kB] Get: 53 http://deb.debian.org/debian forky/main arm64 libgssapi-krb5-2 arm64 1.21.3-5 [127 kB] Get: 54 http://deb.debian.org/debian forky/main arm64 libgssrpc4t64 arm64 1.21.3-5 [57.2 kB] Get: 55 http://deb.debian.org/debian forky/main arm64 libkadm5clnt-mit12 arm64 1.21.3-5 [41.1 kB] Get: 56 http://deb.debian.org/debian forky/main arm64 libkdb5-10t64 arm64 1.21.3-5 [41.3 kB] Get: 57 http://deb.debian.org/debian forky/main arm64 libkadm5srv-mit12 arm64 1.21.3-5 [53.0 kB] Get: 58 http://deb.debian.org/debian forky/main arm64 krb5-multidev arm64 1.21.3-5 [126 kB] Get: 59 http://deb.debian.org/debian forky/main arm64 libaec0 arm64 1.1.4-2 [22.6 kB] Get: 60 http://deb.debian.org/debian forky/main arm64 libsz2 arm64 1.1.4-2 [8072 B] Get: 61 http://deb.debian.org/debian forky/main arm64 libaec-dev arm64 1.1.4-2 [20.3 kB] Get: 62 http://deb.debian.org/debian forky/main arm64 libnghttp3-9 arm64 1.12.0-1 [63.6 kB] Get: 63 http://deb.debian.org/debian forky/main arm64 libngtcp2-16 arm64 1.16.0-1 [123 kB] Get: 64 http://deb.debian.org/debian forky/main arm64 libbrotli1 arm64 1.1.0-2+b7 [308 kB] Get: 65 http://deb.debian.org/debian forky/main arm64 libidn2-0 arm64 2.3.8-4 [108 kB] Get: 66 http://deb.debian.org/debian forky/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-10 [19.8 kB] Get: 67 http://deb.debian.org/debian forky/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-10 [55.0 kB] Get: 68 http://deb.debian.org/debian forky/main arm64 libldap2 arm64 2.6.10+dfsg-1 [179 kB] Get: 69 http://deb.debian.org/debian forky/main arm64 libnghttp2-14 arm64 1.64.0-1.1+b1 [71.7 kB] Get: 70 http://deb.debian.org/debian forky/main arm64 libngtcp2-crypto-ossl0 arm64 1.16.0-1 [25.7 kB] Get: 71 http://deb.debian.org/debian forky/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB] Get: 72 http://deb.debian.org/debian forky/main arm64 libp11-kit0 arm64 0.25.9-2 [420 kB] Get: 73 http://deb.debian.org/debian forky/main arm64 libtasn1-6 arm64 4.20.0-2 [47.3 kB] Get: 74 http://deb.debian.org/debian forky/main arm64 libgnutls30t64 arm64 3.8.10-3 [1384 kB] Get: 75 http://deb.debian.org/debian forky/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-3 [56.3 kB] Get: 76 http://deb.debian.org/debian forky/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Get: 77 http://deb.debian.org/debian forky/main arm64 libcurl4t64 arm64 8.17.0~rc2-1 [369 kB] Get: 78 http://deb.debian.org/debian forky/main arm64 libhdf5-310 arm64 1.14.5+repack-4 [1177 kB] Get: 79 http://deb.debian.org/debian forky/main arm64 libhdf5-cpp-310 arm64 1.14.5+repack-4 [129 kB] Get: 80 http://deb.debian.org/debian forky/main arm64 libngtcp2-crypto-gnutls8 arm64 1.16.0-1 [23.8 kB] Get: 81 http://deb.debian.org/debian forky/main arm64 libcurl3t64-gnutls arm64 8.17.0~rc2-1 [363 kB] Get: 82 http://deb.debian.org/debian forky/main arm64 libdeflate0 arm64 1.23-2 [42.4 kB] Get: 83 http://deb.debian.org/debian forky/main arm64 libhtscodecs2 arm64 1.6.1-2 [74.7 kB] Get: 84 http://deb.debian.org/debian forky/main arm64 libhts3t64 arm64 1.22.1+ds2-1 [434 kB] Get: 85 http://deb.debian.org/debian forky/main arm64 libpbcopper2.3.0 arm64 2.3.0+dfsg-4 [623 kB] Get: 86 http://deb.debian.org/debian forky/main arm64 libpbbam2.4.0 arm64 2.4.0+dfsg-2 [693 kB] Get: 87 http://deb.debian.org/debian forky/main arm64 libblasr5.3.5 arm64 5.3.5+dfsg-11 [1065 kB] Get: 88 http://deb.debian.org/debian forky/main arm64 libpbcopper-dev arm64 2.3.0+dfsg-4 [984 kB] Get: 89 http://deb.debian.org/debian forky/main arm64 libpbdata-dev arm64 5.3.5+dfsg-11 [40.9 kB] Get: 90 http://deb.debian.org/debian forky/main arm64 libgfortran5 arm64 15.2.0-7 [371 kB] Get: 91 http://deb.debian.org/debian forky/main arm64 libhdf5-fortran-310 arm64 1.14.5+repack-4 [114 kB] Get: 92 http://deb.debian.org/debian forky/main arm64 libhdf5-hl-310 arm64 1.14.5+repack-4 [68.4 kB] Get: 93 http://deb.debian.org/debian forky/main arm64 libhdf5-hl-fortran-310 arm64 1.14.5+repack-4 [44.5 kB] Get: 94 http://deb.debian.org/debian forky/main arm64 libhdf5-hl-cpp-310 arm64 1.14.5+repack-4 [24.9 kB] Get: 95 http://deb.debian.org/debian forky/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Get: 96 http://deb.debian.org/debian forky/main arm64 libjpeg62-turbo arm64 1:2.1.5-4 [173 kB] Get: 97 http://deb.debian.org/debian forky/main arm64 libjpeg62-turbo-dev arm64 1:2.1.5-4 [293 kB] Get: 98 http://deb.debian.org/debian forky/main arm64 libjpeg-dev arm64 1:2.1.5-4 [72.2 kB] Get: 99 http://deb.debian.org/debian forky/main arm64 libbrotli-dev arm64 1.1.0-2+b7 [308 kB] Get: 100 http://deb.debian.org/debian forky/main arm64 libevent-2.1-7t64 arm64 2.1.12-stable-10+b1 [170 kB] Get: 101 http://deb.debian.org/debian forky/main arm64 libunbound8 arm64 1.24.1-1 [559 kB] Get: 102 http://deb.debian.org/debian forky/main arm64 libgnutls-dane0t64 arm64 3.8.10-3 [456 kB] Get: 103 http://deb.debian.org/debian forky/main arm64 libgnutls-openssl27t64 arm64 3.8.10-3 [455 kB] Get: 104 http://deb.debian.org/debian forky/main arm64 libidn2-dev arm64 2.3.8-4 [102 kB] Get: 105 http://deb.debian.org/debian forky/main arm64 libp11-kit-dev arm64 0.25.9-2 [220 kB] Get: 106 http://deb.debian.org/debian forky/main arm64 libtasn1-6-dev arm64 4.20.0-2 [96.7 kB] Get: 107 http://deb.debian.org/debian forky/main arm64 libgmpxx4ldbl arm64 2:6.3.0+dfsg-5 [329 kB] Get: 108 http://deb.debian.org/debian forky/main arm64 libgmp-dev arm64 2:6.3.0+dfsg-5 [621 kB] Get: 109 http://deb.debian.org/debian forky/main arm64 nettle-dev arm64 3.10.2-1 [1319 kB] Get: 110 http://deb.debian.org/debian forky/main arm64 libgnutls28-dev arm64 3.8.10-3 [1414 kB] Get: 111 http://deb.debian.org/debian forky/main arm64 libkrb5-dev arm64 1.21.3-5 [16.1 kB] Get: 112 http://deb.debian.org/debian forky/main arm64 libldap-dev arm64 2.6.10+dfsg-1 [305 kB] Get: 113 http://deb.debian.org/debian forky/main arm64 libpkgconf3 arm64 1.8.1-4 [35.3 kB] Get: 114 http://deb.debian.org/debian forky/main arm64 pkgconf-bin arm64 1.8.1-4 [29.6 kB] Get: 115 http://deb.debian.org/debian forky/main arm64 pkgconf arm64 1.8.1-4 [26.1 kB] Get: 116 http://deb.debian.org/debian forky/main arm64 libnghttp2-dev arm64 1.64.0-1.1+b1 [112 kB] Get: 117 http://deb.debian.org/debian forky/main arm64 libnghttp3-dev arm64 1.12.0-1 [91.6 kB] Get: 118 http://deb.debian.org/debian forky/main arm64 libngtcp2-crypto-gnutls-dev arm64 1.16.0-1 [24.6 kB] Get: 119 http://deb.debian.org/debian forky/main arm64 libngtcp2-dev arm64 1.16.0-1 [183 kB] Get: 120 http://deb.debian.org/debian forky/main arm64 libpsl-dev arm64 0.21.2-1.1+b1 [77.9 kB] Get: 121 http://deb.debian.org/debian forky/main arm64 librtmp-dev arm64 2.4+20151223.gitfa8646d.1-3 [173 kB] Get: 122 http://deb.debian.org/debian forky/main arm64 libssl-dev arm64 3.5.4-1 [3377 kB] Get: 123 http://deb.debian.org/debian forky/main arm64 libssh2-1-dev arm64 1.11.1-1 [388 kB] Get: 124 http://deb.debian.org/debian forky/main arm64 libzstd-dev arm64 1.5.7+dfsg-2 [330 kB] Get: 125 http://deb.debian.org/debian forky/main arm64 libcurl4-gnutls-dev arm64 8.17.0~rc2-1 [498 kB] Get: 126 http://deb.debian.org/debian forky/main arm64 libhdf5-dev arm64 1.14.5+repack-4 [3219 kB] Get: 127 http://deb.debian.org/debian forky/main arm64 libbz2-dev arm64 1.0.8-6 [31.9 kB] Get: 128 http://deb.debian.org/debian forky/main arm64 libdeflate-dev arm64 1.23-2 [51.3 kB] Get: 129 http://deb.debian.org/debian forky/main arm64 liblzma-dev arm64 5.8.1-2 [344 kB] Get: 130 http://deb.debian.org/debian forky/main arm64 libhts-dev arm64 1.22.1+ds2-1 [1684 kB] Get: 131 http://deb.debian.org/debian forky/main arm64 libpbbam-dev arm64 2.4.0+dfsg-2 [88.2 kB] Get: 132 http://deb.debian.org/debian forky/main arm64 libblasr-dev arm64 5.3.5+dfsg-11 [2093 kB] Get: 133 http://deb.debian.org/debian forky/main arm64 libgcc-14-dev arm64 14.3.0-10 [2366 kB] Get: 134 http://deb.debian.org/debian forky/main arm64 libstdc++-14-dev arm64 14.3.0-10 [2568 kB] Get: 135 http://deb.debian.org/debian forky/main arm64 libboost1.83-dev arm64 1.83.0-5 [10.6 MB] Get: 136 http://deb.debian.org/debian forky/main arm64 libboost-dev arm64 1.83.0.2+b2 [3828 B] Get: 137 http://deb.debian.org/debian forky/main arm64 libpbihdf-dev arm64 5.3.5+dfsg-11 [47.4 kB] Get: 138 http://deb.debian.org/debian forky/main arm64 libpbseq-dev arm64 5.3.5+dfsg-11 [5148 B] Get: 139 http://deb.debian.org/debian forky/main arm64 libtclap-dev arm64 1.2.5-1+b2 [3360 kB] Fetched 68.3 MB in 1s (74.9 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19971 files and directories currently installed.) Preparing to unpack .../libexpat1_2.7.3-1_arm64.deb ... Unpacking libexpat1:arm64 (2.7.3-1) ... Selecting previously unselected package libpython3.13-minimal:arm64. Preparing to unpack .../libpython3.13-minimal_3.13.9-1_arm64.deb ... Unpacking libpython3.13-minimal:arm64 (3.13.9-1) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../python3.13-minimal_3.13.9-1_arm64.deb ... Unpacking python3.13-minimal (3.13.9-1) ... Setting up libpython3.13-minimal:arm64 (3.13.9-1) ... Setting up libexpat1:arm64 (2.7.3-1) ... Setting up python3.13-minimal (3.13.9-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20305 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.13.7-1_arm64.deb ... Unpacking python3-minimal (3.13.7-1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_14.0.0_all.deb ... Unpacking media-types (14.0.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.5_all.deb ... Unpacking netbase (6.5) ... Selecting previously unselected package tzdata. Preparing to unpack .../3-tzdata_2025b-5_all.deb ... Unpacking tzdata (2025b-5) ... Selecting previously unselected package libffi8:arm64. Preparing to unpack .../4-libffi8_3.5.2-2_arm64.deb ... Unpacking libffi8:arm64 (3.5.2-2) ... Selecting previously unselected package readline-common. Preparing to unpack .../5-readline-common_8.3-3_all.deb ... Unpacking readline-common (8.3-3) ... Selecting previously unselected package libreadline8t64:arm64. Preparing to unpack .../6-libreadline8t64_8.3-3_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.3-3) ... Selecting previously unselected package libpython3.13-stdlib:arm64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.9-1_arm64.deb ... Unpacking libpython3.13-stdlib:arm64 (3.13.9-1) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.9-1_arm64.deb ... Unpacking python3.13 (3.13.9-1) ... Selecting previously unselected package libpython3-stdlib:arm64. Preparing to unpack .../9-libpython3-stdlib_3.13.7-1_arm64.deb ... Unpacking libpython3-stdlib:arm64 (3.13.7-1) ... Setting up python3-minimal (3.13.7-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21320 files and directories currently installed.) Preparing to unpack .../000-python3_3.13.7-1_arm64.deb ... Unpacking python3 (3.13.7-1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../001-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../002-libmagic-mgc_1%3a5.46-5_arm64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../003-libmagic1t64_1%3a5.46-5_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../004-file_1%3a5.46-5_arm64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../005-gettext-base_0.23.1-2+b1_arm64.deb ... Unpacking gettext-base (0.23.1-2+b1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../006-libuchardet0_0.0.8-2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-2) ... Selecting previously unselected package groff-base. Preparing to unpack .../007-groff-base_1.23.0-9_arm64.deb ... Unpacking groff-base (1.23.0-9) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../008-bsdextrautils_2.41.2-4_arm64.deb ... Unpacking bsdextrautils (2.41.2-4) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../009-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../010-man-db_2.13.1-1_arm64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../011-m4_1.4.20-2_arm64.deb ... Unpacking m4 (1.4.20-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../012-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../013-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../014-automake_1%3a1.18.1-2_all.deb ... Unpacking automake (1:1.18.1-2) ... Selecting previously unselected package autopoint. Preparing to unpack .../015-autopoint_0.23.1-2_all.deb ... Unpacking autopoint (0.23.1-2) ... Selecting previously unselected package libcom-err2:arm64. Preparing to unpack .../016-libcom-err2_1.47.2-3+b3_arm64.deb ... Unpacking libcom-err2:arm64 (1.47.2-3+b3) ... Selecting previously unselected package comerr-dev:arm64. Preparing to unpack .../017-comerr-dev_2.1-1.47.2-3+b3_arm64.deb ... Unpacking comerr-dev:arm64 (2.1-1.47.2-3+b3) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../018-libdebhelper-perl_13.28_all.deb ... Unpacking libdebhelper-perl (13.28) ... Selecting previously unselected package libtool. Preparing to unpack .../019-libtool_2.5.4-7_all.deb ... Unpacking libtool (2.5.4-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../020-dh-autoreconf_21_all.deb ... Unpacking dh-autoreconf (21) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../021-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../022-libfile-stripnondeterminism-perl_1.15.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.15.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../023-dh-strip-nondeterminism_1.15.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.15.0-1) ... Selecting previously unselected package libelf1t64:arm64. Preparing to unpack .../024-libelf1t64_0.193-3_arm64.deb ... Unpacking libelf1t64:arm64 (0.193-3) ... Selecting previously unselected package dwz. Preparing to unpack .../025-dwz_0.16-2_arm64.deb ... Unpacking dwz (0.16-2) ... Selecting previously unselected package libunistring5:arm64. Preparing to unpack .../026-libunistring5_1.3-2_arm64.deb ... Unpacking libunistring5:arm64 (1.3-2) ... Selecting previously unselected package libxml2-16:arm64. Preparing to unpack .../027-libxml2-16_2.14.6+dfsg-0.1_arm64.deb ... Unpacking libxml2-16:arm64 (2.14.6+dfsg-0.1) ... Selecting previously unselected package gettext. Preparing to unpack .../028-gettext_0.23.1-2+b1_arm64.deb ... Unpacking gettext (0.23.1-2+b1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../029-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../030-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../031-debhelper_13.28_all.deb ... Unpacking debhelper (13.28) ... Selecting previously unselected package gcc-14-base:arm64. Preparing to unpack .../032-gcc-14-base_14.3.0-10_arm64.deb ... Unpacking gcc-14-base:arm64 (14.3.0-10) ... Selecting previously unselected package googletest. Preparing to unpack .../033-googletest_1.17.0-1_all.deb ... Unpacking googletest (1.17.0-1) ... Selecting previously unselected package hdf5-helpers. Preparing to unpack .../034-hdf5-helpers_1.14.5+repack-4_arm64.deb ... Unpacking hdf5-helpers (1.14.5+repack-4) ... Selecting previously unselected package libkrb5support0:arm64. Preparing to unpack .../035-libkrb5support0_1.21.3-5_arm64.deb ... Unpacking libkrb5support0:arm64 (1.21.3-5) ... Selecting previously unselected package libk5crypto3:arm64. Preparing to unpack .../036-libk5crypto3_1.21.3-5_arm64.deb ... Unpacking libk5crypto3:arm64 (1.21.3-5) ... Selecting previously unselected package libkeyutils1:arm64. Preparing to unpack .../037-libkeyutils1_1.6.3-6_arm64.deb ... Unpacking libkeyutils1:arm64 (1.6.3-6) ... Selecting previously unselected package libkrb5-3:arm64. Preparing to unpack .../038-libkrb5-3_1.21.3-5_arm64.deb ... Unpacking libkrb5-3:arm64 (1.21.3-5) ... Selecting previously unselected package libgssapi-krb5-2:arm64. Preparing to unpack .../039-libgssapi-krb5-2_1.21.3-5_arm64.deb ... Unpacking libgssapi-krb5-2:arm64 (1.21.3-5) ... Selecting previously unselected package libgssrpc4t64:arm64. Preparing to unpack .../040-libgssrpc4t64_1.21.3-5_arm64.deb ... Unpacking libgssrpc4t64:arm64 (1.21.3-5) ... Selecting previously unselected package libkadm5clnt-mit12:arm64. Preparing to unpack .../041-libkadm5clnt-mit12_1.21.3-5_arm64.deb ... Unpacking libkadm5clnt-mit12:arm64 (1.21.3-5) ... Selecting previously unselected package libkdb5-10t64:arm64. Preparing to unpack .../042-libkdb5-10t64_1.21.3-5_arm64.deb ... Unpacking libkdb5-10t64:arm64 (1.21.3-5) ... Selecting previously unselected package libkadm5srv-mit12:arm64. Preparing to unpack .../043-libkadm5srv-mit12_1.21.3-5_arm64.deb ... Unpacking libkadm5srv-mit12:arm64 (1.21.3-5) ... Selecting previously unselected package krb5-multidev:arm64. Preparing to unpack .../044-krb5-multidev_1.21.3-5_arm64.deb ... Unpacking krb5-multidev:arm64 (1.21.3-5) ... Selecting previously unselected package libaec0:arm64. Preparing to unpack .../045-libaec0_1.1.4-2_arm64.deb ... Unpacking libaec0:arm64 (1.1.4-2) ... Selecting previously unselected package libsz2:arm64. Preparing to unpack .../046-libsz2_1.1.4-2_arm64.deb ... Unpacking libsz2:arm64 (1.1.4-2) ... Selecting previously unselected package libaec-dev:arm64. Preparing to unpack .../047-libaec-dev_1.1.4-2_arm64.deb ... Unpacking libaec-dev:arm64 (1.1.4-2) ... Selecting previously unselected package libnghttp3-9:arm64. Preparing to unpack .../048-libnghttp3-9_1.12.0-1_arm64.deb ... Unpacking libnghttp3-9:arm64 (1.12.0-1) ... Selecting previously unselected package libngtcp2-16:arm64. 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Setting up libk5crypto3:arm64 (1.21.3-5) ... Setting up libsasl2-2:arm64 (2.1.28+dfsg1-10) ... Setting up libgfortran5:arm64 (15.2.0-7) ... Setting up autoconf (2.72-3.1) ... Setting up libtclap-dev (1.2.5-1+b2) ... Setting up libnghttp3-9:arm64 (1.12.0-1) ... Setting up libnghttp3-dev:arm64 (1.12.0-1) ... Setting up liblzma-dev:arm64 (5.8.1-2) ... Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libffi8:arm64 (3.5.2-2) ... Setting up dwz (0.16-2) ... Setting up sensible-utils (0.0.26) ... Setting up libuchardet0:arm64 (0.0.8-2) ... Setting up libtasn1-6:arm64 (4.20.0-2) ... Setting up netbase (6.5) ... Setting up libngtcp2-16:arm64 (1.16.0-1) ... Setting up libkrb5-3:arm64 (1.21.3-5) ... Setting up libssh2-1t64:arm64 (1.11.1-1) ... Setting up libgcc-14-dev:arm64 (14.3.0-10) ... Setting up libtasn1-6-dev:arm64 (4.20.0-2) ... Setting up libdeflate-dev:arm64 (1.23-2) ... Setting up libstdc++-14-dev:arm64 (14.3.0-10) ... Setting up readline-common (8.3-3) ... Setting up libldap2:arm64 (2.6.10+dfsg-1) ... Setting up libbrotli-dev:arm64 (1.1.0-2+b7) ... Setting up libsz2:arm64 (1.1.4-2) ... Setting up libpbcopper2.3.0:arm64 (2.3.0+dfsg-4) ... Setting up libbz2-dev:arm64 (1.0.8-6) ... Setting up automake (1:1.18.1-2) ... update-alternatives: using /usr/bin/automake-1.18 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up libboost1.83-dev:arm64 (1.83.0-5) ... Setting up gettext (0.23.1-2+b1) ... Setting up libgmp-dev:arm64 (2:6.3.0+dfsg-5) ... Setting up nettle-dev:arm64 (3.10.2-1) ... Setting up libtool (2.5.4-7) ... Setting up libaec-dev:arm64 (1.1.4-2) ... Setting up libjpeg-dev:arm64 (1:2.1.5-4) ... Setting up libidn2-0:arm64 (2.3.8-4) ... Setting up libngtcp2-dev:arm64 (1.16.0-1) ... Setting up pkgconf:arm64 (1.8.1-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (21) ... Setting up libldap-dev:arm64 (2.6.10+dfsg-1) ... Setting up libp11-kit0:arm64 (0.25.9-2) ... Setting up libgssapi-krb5-2:arm64 (1.21.3-5) ... Setting up libpbcopper-dev:arm64 (2.3.0+dfsg-4) ... Setting up libssh2-1-dev:arm64 (1.11.1-1) ... Setting up libidn2-dev:arm64 (2.3.8-4) ... Setting up libngtcp2-crypto-ossl0:arm64 (1.16.0-1) ... Setting up libreadline8t64:arm64 (8.3-3) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up groff-base (1.23.0-9) ... Setting up libboost-dev:arm64 (1.83.0.2+b2) ... Setting up libpython3.13-stdlib:arm64 (3.13.9-1) ... Setting up libp11-kit-dev:arm64 (0.25.9-2) ... Setting up libpython3-stdlib:arm64 (3.13.7-1) ... Setting up libgnutls30t64:arm64 (3.8.10-3) ... Setting up libgnutls-openssl27t64:arm64 (3.8.10-3) ... Setting up libnghttp2-dev:arm64 (1.64.0-1.1+b1) ... Setting up python3.13 (3.13.9-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpsl5t64:arm64 (0.21.2-1.1+b1) ... Setting up libpbdata-dev:arm64 (5.3.5+dfsg-11) ... Setting up python3 (3.13.7-1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libpsl-dev:arm64 (0.21.2-1.1+b1) ... Setting up libgnutls-dane0t64:arm64 (3.8.10-3) ... Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-3) ... Setting up libgssrpc4t64:arm64 (1.21.3-5) ... Setting up libngtcp2-crypto-gnutls8:arm64 (1.16.0-1) ... Setting up libkadm5clnt-mit12:arm64 (1.21.3-5) ... Setting up libgnutls28-dev:arm64 (3.8.10-3) ... Setting up libcurl4t64:arm64 (8.17.0~rc2-1) ... Setting up libkdb5-10t64:arm64 (1.21.3-5) ... Setting up libcurl3t64-gnutls:arm64 (8.17.0~rc2-1) ... Setting up debhelper (13.28) ... Setting up libngtcp2-crypto-gnutls-dev:arm64 (1.16.0-1) ... Setting up librtmp-dev:arm64 (2.4+20151223.gitfa8646d.1-3) ... Setting up libhdf5-310:arm64 (1.14.5+repack-4) ... Setting up libkadm5srv-mit12:arm64 (1.21.3-5) ... Setting up libhts3t64:arm64 (1.22.1+ds2-1) ... Setting up libhdf5-fortran-310:arm64 (1.14.5+repack-4) ... Setting up krb5-multidev:arm64 (1.21.3-5) ... Setting up libhdf5-cpp-310:arm64 (1.14.5+repack-4) ... Setting up libhdf5-hl-310:arm64 (1.14.5+repack-4) ... Setting up libpbbam2.4.0:arm64 (2.4.0+dfsg-2) ... Setting up libblasr5.3.5:arm64 (5.3.5+dfsg-11) ... Setting up libkrb5-dev:arm64 (1.21.3-5) ... Setting up libhdf5-hl-cpp-310:arm64 (1.14.5+repack-4) ... Setting up libhdf5-hl-fortran-310:arm64 (1.14.5+repack-4) ... Setting up libcurl4-gnutls-dev:arm64 (8.17.0~rc2-1) ... Setting up libhdf5-dev (1.14.5+repack-4) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/aarch64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up libpbihdf-dev:arm64 (5.3.5+dfsg-11) ... Setting up libhts-dev:arm64 (1.22.1+ds2-1) ... Setting up libpbbam-dev:arm64 (2.4.0+dfsg-2) ... Setting up libblasr-dev:arm64 (5.3.5+dfsg-11) ... Setting up libpbseq-dev:arm64 (5.3.5+dfsg-11) ... Processing triggers for libc-bin (2.41-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../pbdagcon_0.3+git20180411.c14c422+dfsg-9_source.changes dpkg-buildpackage: info: source package pbdagcon dpkg-buildpackage: info: source version 0.3+git20180411.c14c422+dfsg-9 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_auto_clean make -j12 clean make[1]: Entering directory '/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg' make -C src/cpp clean make[2]: Entering directory '/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/src/cpp' rm -f *.d rm -f *.o rm -f pbdagcon rm -f dazcon make[2]: Leaving directory '/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/src/cpp' make -C test/cpp clean make[2]: Entering directory '/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/test/cpp' rm -f .//*.o rm -f *.o rm -f test_* make[2]: Leaving directory '/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/test/cpp' make[1]: Leaving directory '/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg' ./configure.py --shared uname -s uname='Linux' writing to '/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/defines.mk' """ DALIGNER_INCLUDE ?= ${DALIGNER_SRC} DALIGNER_SRC ?= /build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/daligner-include DAZZ_DB_INCLUDE ?= ${DAZZ_DB_SRC} DAZZ_DB_SRC ?= /build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include GTEST_INCLUDE ?= /usr/src/googletest/googletest/include GTEST_SRC ?= /usr/src/googletest/googletest/src HDF5_LIB ?= /usr/lib/aarch64-linux-gnu/hdf5/serial HDF5_LIBFLAGS ?= -lhdf5_cpp -lhdf5 HTSLIB_LIBS ?= -lhts LIBBLASR_INCLUDE ?= /usr/include/pbseq/alignment LIBBLASR_LIBFLAGS ?= -lblasr LIBPBDATA_INCLUDE ?= /usr/include/pbseq/pbdata LIBPBIHDF_INCLUDE ?= /usr/include/pbseq/hdf PBBAM_INCLUDE ?= /usr/include/pbseq PBBAM_LIBFLAGS ?= -lpbbam PTHREAD_LIBFLAGS ?= -lpthread ZLIB_LIBFLAGS ?= -lz LDLIBS+=-lrt """ make[1]: Leaving directory '/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg' dh_auto_build make -j12 INSTALL="install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg' make -C src/cpp make[2]: Entering directory '/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/src/cpp' g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wall -Wuninitialized -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -MMD -MP -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/daligner-include -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -I/usr/include/pbseq -isystem.//third-party -c -o Alignment.o Alignment.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wall -Wuninitialized -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -MMD -MP -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/daligner-include -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -I/usr/include/pbseq -isystem.//third-party -c -o AlnGraphBoost.o AlnGraphBoost.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wall -Wuninitialized -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -MMD -MP -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/daligner-include -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -I/usr/include/pbseq -isystem.//third-party -c -o BlasrM5AlnProvider.o BlasrM5AlnProvider.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wall -Wuninitialized -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -MMD -MP -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/daligner-include -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -I/usr/include/pbseq -isystem.//third-party -c -o main.o main.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wall -Wuninitialized -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -MMD -MP -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/daligner-include -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -I/usr/include/pbseq -isystem.//third-party -c -o SimpleAligner.o SimpleAligner.cpp cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wall -Wextra -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -MMD -MP -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/daligner-include -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -I/usr/include/pbseq -isystem.//third-party -c -o DB.o /build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include/DB.c cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wall -Wextra -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -MMD -MP -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/daligner-include -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -I/usr/include/pbseq -isystem.//third-party -c -o QV.o /build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include/QV.c cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wall -Wextra -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -MMD -MP -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/daligner-include -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -I/usr/include/pbseq -isystem.//third-party -c -o align.o /build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/daligner-include/align.c g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wall -Wuninitialized -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -MMD -MP -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/daligner-include -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -I/usr/include/pbseq -isystem.//third-party -c -o DazAlnProvider.o DazAlnProvider.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wall -Wuninitialized -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -MMD -MP -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/daligner-include -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -I/usr/include/pbseq -isystem.//third-party -c -o dazcon.o dazcon.cpp /build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include/DB.c: In function 'Open_QVs': /build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include/DB.c:2415:16: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 2415 | (void) fscanf(istub,DB_NFILE,&nfiles); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include/DB.c:2419:20: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 2419 | { (void) fscanf(istub,DB_FDATA,&last,fname,prolog); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include/DB.c:2424:20: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 2424 | { (void) fscanf(istub,DB_FDATA,&last,fname,prolog); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o dazcon Alignment.o AlnGraphBoost.o DB.o QV.o align.o DazAlnProvider.o dazcon.o -Wl,-z,relro -L /usr/lib/aarch64-linux-gnu/hdf5/serial -lrt -lblasr -lpbbam -lhdf5_cpp -lhdf5 -lhts -lz -lpthread g++ -o pbdagcon Alignment.o AlnGraphBoost.o BlasrM5AlnProvider.o main.o SimpleAligner.o -Wl,-z,relro -L /usr/lib/aarch64-linux-gnu/hdf5/serial -lrt -lblasr -lpbbam -lhdf5_cpp -lhdf5 -lhts -lz -lpthread make[2]: Leaving directory '/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/src/cpp' make[1]: Leaving directory '/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg' dh_auto_test make -j12 check make[1]: Entering directory '/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg' make -C src/cpp make[2]: Entering directory '/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/src/cpp' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/src/cpp' make -C test/cpp make[2]: Entering directory '/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/test/cpp' g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -g -Wall -Wextra -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -I. -I./ -I.//../../src/cpp -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/daligner-include -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -I/usr/include/pbseq -I/usr/src/googletest/googletest/include -Ithird-party -isystem /usr/src/googletest/googletest/include -isystem /usr/src/googletest/googletest/src/.. -c -o gtest-all.o /usr/src/googletest/googletest/src/gtest-all.cc g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -g -Wall -Wextra -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -I. -I./ -I.//../../src/cpp -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/daligner-include -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -I/usr/include/pbseq -I/usr/src/googletest/googletest/include -Ithird-party -isystem /usr/src/googletest/googletest/include -isystem /usr/src/googletest/googletest/src/.. -c -o gtest_main.o /usr/src/googletest/googletest/src/gtest_main.cc g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I. -I./ -I.//../../src/cpp -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/daligner-include -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -I/usr/include/pbseq -I/usr/src/googletest/googletest/include -Ithird-party -c -o AlnGraphBoost.o .//../../src/cpp/AlnGraphBoost.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I. -I./ -I.//../../src/cpp -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/daligner-include -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -I/usr/include/pbseq -I/usr/src/googletest/googletest/include -Ithird-party -c -o Alignment.o .//../../src/cpp/Alignment.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I. -I./ -I.//../../src/cpp -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/daligner-include -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -I/usr/include/pbseq -I/usr/src/googletest/googletest/include -Ithird-party -c -o SimpleAligner.o .//../../src/cpp/SimpleAligner.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I. -I./ -I.//../../src/cpp -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/daligner-include -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -I/usr/include/pbseq -I/usr/src/googletest/googletest/include -Ithird-party -c -o AlnGraphBoostTest.o AlnGraphBoostTest.cpp mkdir xml g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I. -I./ -I.//../../src/cpp -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/daligner-include -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -I/usr/include/pbseq -I/usr/src/googletest/googletest/include -Ithird-party -c -o AlignmentTest.o AlignmentTest.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I. -I./ -I.//../../src/cpp -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/daligner-include -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -I/usr/include/pbseq -I/usr/src/googletest/googletest/include -Ithird-party -c -o SimpleAlignerTest.o SimpleAlignerTest.cpp cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I. -I./ -I.//../../src/cpp -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/daligner-include -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -I/usr/include/pbseq -I/usr/src/googletest/googletest/include -Ithird-party -c -o DB.o /build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include/DB.c cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I. -I./ -I.//../../src/cpp -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/daligner-include -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -I/usr/include/pbseq -I/usr/src/googletest/googletest/include -Ithird-party -c -o QV.o /build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include/QV.c cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I. -I./ -I.//../../src/cpp -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/daligner-include -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -I/usr/include/pbseq -I/usr/src/googletest/googletest/include -Ithird-party -c -o align.o /build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/daligner-include/align.c g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I. -I./ -I.//../../src/cpp -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/daligner-include -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -I/usr/include/pbseq -I/usr/src/googletest/googletest/include -Ithird-party -c -o DazAlnProvider.o .//../../src/cpp/DazAlnProvider.cpp /build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include/DB.c: In function 'Open_QVs': /build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include/DB.c:2415:16: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 2415 | (void) fscanf(istub,DB_NFILE,&nfiles); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include/DB.c:2419:20: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 2419 | { (void) fscanf(istub,DB_FDATA,&last,fname,prolog); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include/DB.c:2424:20: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 2424 | { (void) fscanf(istub,DB_FDATA,&last,fname,prolog); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I. -I./ -I.//../../src/cpp -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/daligner-include -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -I/usr/include/pbseq -I/usr/src/googletest/googletest/include -Ithird-party -c -o TargetHitTest.o TargetHitTest.cpp g++ -o test-alngraph gtest-all.o gtest_main.o AlnGraphBoost.o Alignment.o SimpleAligner.o AlnGraphBoostTest.o -Wl,-z,relro -L /usr/lib/aarch64-linux-gnu/hdf5/serial -lrt -lblasr -lpbbam -lhdf5_cpp -lhdf5 -lhts -lz -lpthread g++ -o test-alignment gtest-all.o gtest_main.o AlnGraphBoost.o Alignment.o SimpleAligner.o AlignmentTest.o -Wl,-z,relro -L /usr/lib/aarch64-linux-gnu/hdf5/serial -lrt -lblasr -lpbbam -lhdf5_cpp -lhdf5 -lhts -lz -lpthread g++ -o test-simple_aligner gtest-all.o gtest_main.o AlnGraphBoost.o Alignment.o SimpleAligner.o SimpleAlignerTest.o -Wl,-z,relro -L /usr/lib/aarch64-linux-gnu/hdf5/serial -lrt -lblasr -lpbbam -lhdf5_cpp -lhdf5 -lhts -lz -lpthread g++ -o test-target_hit gtest-all.o gtest_main.o DB.o QV.o align.o Alignment.o DazAlnProvider.o TargetHitTest.o -Wl,-z,relro -L /usr/lib/aarch64-linux-gnu/hdf5/serial -lrt -lblasr -lpbbam -lhdf5_cpp -lhdf5 -lhts -lz -lpthread LD_LIBRARY_PATH=::::/usr/lib/aarch64-linux-gnu/hdf5/serial::: PBDAGCON_TEST_DATA_DIR=./ ./test-alngraph --gtest_output=xml:xml/test-alngraph.xml Running main() from /usr/src/googletest/googletest/src/gtest_main.cc [==========] Running 2 tests from 1 test suite. [----------] Global test environment set-up. [----------] 2 tests from AlnGraphBoostTest [ RUN ] AlnGraphBoostTest.RawConsensus [ OK ] AlnGraphBoostTest.RawConsensus (0 ms) [ RUN ] AlnGraphBoostTest.DanglingNodes [ OK ] AlnGraphBoostTest.DanglingNodes (0 ms) [----------] 2 tests from AlnGraphBoostTest (0 ms total) [----------] Global test environment tear-down [==========] 2 tests from 1 test suite ran. (0 ms total) [ PASSED ] 2 tests. LD_LIBRARY_PATH=::::/usr/lib/aarch64-linux-gnu/hdf5/serial::: PBDAGCON_TEST_DATA_DIR=./ ./test-target_hit --gtest_output=xml:xml/test-target_hit.xml Running main() from /usr/src/googletest/googletest/src/gtest_main.cc [==========] Running 3 tests from 1 test suite. [----------] Global test environment set-up. [----------] 3 tests from TargetHitTest [ RUN ] TargetHitTest.single_overlap_perfect [ OK ] TargetHitTest.single_overlap_perfect (0 ms) [ RUN ] TargetHitTest.single_overlap_inaccurate [ OK ] TargetHitTest.single_overlap_inaccurate (0 ms) [ RUN ] TargetHitTest.multi_overlap_inaccurate [ OK ] TargetHitTest.multi_overlap_inaccurate (0 ms) [----------] 3 tests from TargetHitTest (0 ms total) [----------] Global test environment tear-down [==========] 3 tests from 1 test suite ran. (0 ms total) [ PASSED ] 3 tests. LD_LIBRARY_PATH=::::/usr/lib/aarch64-linux-gnu/hdf5/serial::: PBDAGCON_TEST_DATA_DIR=./ ./test-simple_aligner --gtest_output=xml:xml/test-simple_aligner.xml Running main() from /usr/src/googletest/googletest/src/gtest_main.cc [==========] Running 1 test from 1 test suite. [----------] Global test environment set-up. [----------] 1 test from SimpleAligner [ RUN ] SimpleAligner.align [ OK ] SimpleAligner.align (0 ms) [----------] 1 test from SimpleAligner (0 ms total) [----------] Global test environment tear-down [==========] 1 test from 1 test suite ran. (1 ms total) [ PASSED ] 1 test. LD_LIBRARY_PATH=::::/usr/lib/aarch64-linux-gnu/hdf5/serial::: PBDAGCON_TEST_DATA_DIR=./ ./test-alignment --gtest_output=xml:xml/test-alignment.xml Running main() from /usr/src/googletest/googletest/src/gtest_main.cc [==========] Running 4 tests from 1 test suite. [----------] Global test environment set-up. [----------] 4 tests from Alignment [ RUN ] Alignment.Normalize [ OK ] Alignment.Normalize (0 ms) [ RUN ] Alignment.ParseBasic [ OK ] Alignment.ParseBasic (0 ms) [ RUN ] Alignment.ParseQuery [ OK ] Alignment.ParseQuery (0 ms) [ RUN ] Alignment.Trim [ OK ] Alignment.Trim (0 ms) [----------] 4 tests from Alignment (0 ms total) [----------] Global test environment tear-down [==========] 4 tests from 1 test suite ran. (6 ms total) [ PASSED ] 4 tests. make[2]: Leaving directory '/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/test/cpp' make[1]: Leaving directory '/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/pbdagcon/ dh_install dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'pbdagcon-dbgsym' in '../pbdagcon-dbgsym_0.3+git20180411.c14c422+dfsg-9_arm64.deb'. dpkg-deb: building package 'pbdagcon' in '../pbdagcon_0.3+git20180411.c14c422+dfsg-9_arm64.deb'. dpkg-genbuildinfo --build=binary -O../pbdagcon_0.3+git20180411.c14c422+dfsg-9_arm64.buildinfo dpkg-genchanges --build=binary -O../pbdagcon_0.3+git20180411.c14c422+dfsg-9_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2777547 and its subdirectories I: Current time: Thu Dec 3 15:04:11 -12 2026 I: pbuilder-time-stamp: 1796353451 Fri Oct 31 20:41:12 UTC 2025 I: 1st build successful. Starting 2nd build on remote node codethink04-arm64.debian.net. Fri Oct 31 20:41:12 UTC 2025 I: Preparing to do remote build '2' on codethink04-arm64.debian.net. Fri Oct 31 20:41:12 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink04-arm64.debian.net is marked as down. Fri Oct 31 20:41:12 UTC 2025 - checking via ssh if codethink04-arm64.debian.net is up. removed '/tmp/read-only-fs-test-lQrSLO' ==================================================================================== Fri Oct 31 20:41:13 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on codethink04-arm64, called using "2 pbdagcon forky /srv/reproducible-results/rbuild-debian/r-b-build.zQTnpsm6 0.3+git20180411.c14c422+dfsg-9" as arguments. Fri Oct 31 20:41:13 UTC 2025 - actually running "reproducible_build.sh" (md5sum bcb6fe1b50cf4e8eedacd0971a9eb63f) as "/tmp/jenkins-script-jnO50Ckt" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Fri Oct 31 20:41:13 UTC 2025 I: Downloading source for forky/pbdagcon=0.3+git20180411.c14c422+dfsg-9 Reading package lists... NOTICE: 'pbdagcon' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/pbdagcon.git Please use: git clone https://salsa.debian.org/med-team/pbdagcon.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 140 kB of source archives. Get:1 http://deb.debian.org/debian forky/main pbdagcon 0.3+git20180411.c14c422+dfsg-9 (dsc) [2538 B] Get:2 http://deb.debian.org/debian forky/main pbdagcon 0.3+git20180411.c14c422+dfsg-9 (tar) [79.8 kB] Get:3 http://deb.debian.org/debian forky/main pbdagcon 0.3+git20180411.c14c422+dfsg-9 (diff) [58.1 kB] Fetched 140 kB in 0s (8215 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'pbdagcon' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/pbdagcon.git Please use: git clone https://salsa.debian.org/med-team/pbdagcon.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 140 kB of source archives. Get:1 http://deb.debian.org/debian forky/main pbdagcon 0.3+git20180411.c14c422+dfsg-9 (dsc) [2538 B] Get:2 http://deb.debian.org/debian forky/main pbdagcon 0.3+git20180411.c14c422+dfsg-9 (tar) [79.8 kB] Get:3 http://deb.debian.org/debian forky/main pbdagcon 0.3+git20180411.c14c422+dfsg-9 (diff) [58.1 kB] Fetched 140 kB in 0s (8215 kB/s) Download complete and in download only mode ============================================================================= Re-Building pbdagcon in forky on arm64 on codethink04-arm64 now. Date: Fri Oct 31 20:41:14 GMT 2025 Date UTC: Fri Oct 31 20:41:14 UTC 2025 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.zQTnpsm6 + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.zQTnpsm6/pbuilderrc_8ekl + case ${ARCH} in + case $ARCH in + locale=nl_BE + language=nl + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' pbdagcon = debian-installer -o pbdagcon = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' pbdagcon = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.zQTnpsm6/pbuilderrc_8ekl --distribution forky --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.zQTnpsm6/b2 --logfile b2/build.log pbdagcon_0.3+git20180411.c14c422+dfsg-9.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Sat Nov 1 10:41:14 +14 2025 I: pbuilder-time-stamp: 1761943274 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [pbdagcon_0.3+git20180411.c14c422+dfsg-9.dsc] I: copying [./pbdagcon_0.3+git20180411.c14c422+dfsg.orig.tar.xz] I: copying [./pbdagcon_0.3+git20180411.c14c422+dfsg-9.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./pbdagcon_0.3+git20180411.c14c422+dfsg-9.dsc: no acceptable signature found dpkg-source: info: extracting pbdagcon in pbdagcon-0.3+git20180411.c14c422+dfsg dpkg-source: info: unpacking pbdagcon_0.3+git20180411.c14c422+dfsg.orig.tar.xz dpkg-source: info: unpacking pbdagcon_0.3+git20180411.c14c422+dfsg-9.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying compiler-flags.patch dpkg-source: info: applying 2to3.patch dpkg-source: info: applying libdata_libpbihdf.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2819095/tmp/hooks/D01_modify_environment starting debug: Running on codethink04-arm64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Oct 31 20:41 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/2819095/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/2819095/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") BASH_VERSION='5.3.3(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=arm64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 nocheck' DIRSTACK=() DISTRIBUTION=forky EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=aarch64 HOST_ARCH=arm64 IFS=' ' INVOCATION_ID=51da06dc92ae40c3a0de50bdb069eab6 LANG=C LANGUAGE=nl_BE:nl LC_ALL=C MACHTYPE=aarch64-unknown-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=2819095 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.zQTnpsm6/pbuilderrc_8ekl --distribution forky --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.zQTnpsm6/b2 --logfile b2/build.log pbdagcon_0.3+git20180411.c14c422+dfsg-9.dsc' SUDO_GID=109 SUDO_HOME=/var/lib/jenkins SUDO_UID=104 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://192.168.101.4:3128 I: uname -a Linux i-capture-the-hostname 6.12.48+deb13-cloud-arm64 #1 SMP Debian 6.12.48-1 (2025-09-20) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2819095/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), python3:any, zlib1g-dev, libhdf5-dev, libboost-dev, libtclap-dev, libpbseq-dev (>= 5.3.5+dfsg-4~), libpbbam-dev, libpbdata-dev (>= 5.3.5+dfsg-4~), libpbcopper-dev, libpbihdf-dev (>= 5.3.5+dfsg-4~), googletest dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19971 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on python3:any. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libhdf5-dev; however: Package libhdf5-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-dev; however: Package libboost-dev is not installed. pbuilder-satisfydepends-dummy depends on libtclap-dev; however: Package libtclap-dev is not installed. pbuilder-satisfydepends-dummy depends on libpbseq-dev (>= 5.3.5+dfsg-4~); however: Package libpbseq-dev is not installed. pbuilder-satisfydepends-dummy depends on libpbbam-dev; however: Package libpbbam-dev is not installed. pbuilder-satisfydepends-dummy depends on libpbdata-dev (>= 5.3.5+dfsg-4~); however: Package libpbdata-dev is not installed. pbuilder-satisfydepends-dummy depends on libpbcopper-dev; however: Package libpbcopper-dev is not installed. pbuilder-satisfydepends-dummy depends on libpbihdf-dev (>= 5.3.5+dfsg-4~); however: Package libpbihdf-dev is not installed. pbuilder-satisfydepends-dummy depends on googletest; however: Package googletest is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} comerr-dev{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gcc-14-base{a} gettext{a} gettext-base{a} googletest{a} groff-base{a} hdf5-helpers{a} intltool-debian{a} krb5-multidev{a} libaec-dev{a} libaec0{a} libarchive-zip-perl{a} libblasr-dev{a} libblasr5.3.5{a} libboost-dev{a} libboost1.83-dev{a} libbrotli-dev{a} libbrotli1{a} libbz2-dev{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4-gnutls-dev{a} libcurl4t64{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libelf1t64{a} libevent-2.1-7t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgcc-14-dev{a} libgfortran5{a} libgmp-dev{a} libgmpxx4ldbl{a} libgnutls-dane0t64{a} libgnutls-openssl27t64{a} libgnutls28-dev{a} libgnutls30t64{a} libgssapi-krb5-2{a} libgssrpc4t64{a} libhdf5-310{a} libhdf5-cpp-310{a} libhdf5-dev{a} libhdf5-fortran-310{a} libhdf5-hl-310{a} libhdf5-hl-cpp-310{a} libhdf5-hl-fortran-310{a} libhts-dev{a} libhts3t64{a} libhtscodecs2{a} libidn2-0{a} libidn2-dev{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libk5crypto3{a} libkadm5clnt-mit12{a} libkadm5srv-mit12{a} libkdb5-10t64{a} libkeyutils1{a} libkrb5-3{a} libkrb5-dev{a} libkrb5support0{a} libldap-dev{a} libldap2{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp2-dev{a} libnghttp3-9{a} libnghttp3-dev{a} libngtcp2-16{a} libngtcp2-crypto-gnutls-dev{a} libngtcp2-crypto-gnutls8{a} libngtcp2-crypto-ossl0{a} libngtcp2-dev{a} libp11-kit-dev{a} libp11-kit0{a} libpbbam-dev{a} libpbbam2.4.0{a} libpbcopper-dev{a} libpbcopper2.3.0{a} libpbdata-dev{a} libpbihdf-dev{a} libpbseq-dev{a} libpipeline1{a} libpkgconf3{a} libpsl-dev{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} librtmp-dev{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1-dev{a} libssh2-1t64{a} libssl-dev{a} libstdc++-14-dev{a} libsz2{a} libtasn1-6{a} libtasn1-6-dev{a} libtclap-dev{a} libtool{a} libuchardet0{a} libunbound8{a} libunistring5{a} libxml2-16{a} libzstd-dev{a} m4{a} man-db{a} media-types{a} netbase{a} nettle-dev{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} python3{a} python3-minimal{a} python3.13{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules libtasn1-doc lynx publicsuffix wget 0 packages upgraded, 139 newly installed, 0 to remove and 0 not upgraded. Need to get 68.3 MB of archives. After unpacking 424 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian forky/main arm64 libexpat1 arm64 2.7.3-1 [96.5 kB] Get: 2 http://deb.debian.org/debian forky/main arm64 libpython3.13-minimal arm64 3.13.9-1 [858 kB] Get: 3 http://deb.debian.org/debian forky/main arm64 python3.13-minimal arm64 3.13.9-1 [2061 kB] Get: 4 http://deb.debian.org/debian forky/main arm64 python3-minimal arm64 3.13.7-1 [27.2 kB] Get: 5 http://deb.debian.org/debian forky/main arm64 media-types all 14.0.0 [30.8 kB] Get: 6 http://deb.debian.org/debian forky/main arm64 netbase all 6.5 [12.4 kB] Get: 7 http://deb.debian.org/debian forky/main arm64 tzdata all 2025b-5 [260 kB] Get: 8 http://deb.debian.org/debian forky/main arm64 libffi8 arm64 3.5.2-2 [21.5 kB] Get: 9 http://deb.debian.org/debian forky/main arm64 readline-common all 8.3-3 [74.8 kB] Get: 10 http://deb.debian.org/debian forky/main arm64 libreadline8t64 arm64 8.3-3 [169 kB] Get: 11 http://deb.debian.org/debian forky/main arm64 libpython3.13-stdlib arm64 3.13.9-1 [1900 kB] Get: 12 http://deb.debian.org/debian forky/main arm64 python3.13 arm64 3.13.9-1 [764 kB] Get: 13 http://deb.debian.org/debian forky/main arm64 libpython3-stdlib arm64 3.13.7-1 [10.2 kB] Get: 14 http://deb.debian.org/debian forky/main arm64 python3 arm64 3.13.7-1 [28.3 kB] Get: 15 http://deb.debian.org/debian forky/main arm64 sensible-utils all 0.0.26 [27.0 kB] Get: 16 http://deb.debian.org/debian forky/main arm64 libmagic-mgc arm64 1:5.46-5 [338 kB] Get: 17 http://deb.debian.org/debian forky/main arm64 libmagic1t64 arm64 1:5.46-5 [103 kB] Get: 18 http://deb.debian.org/debian forky/main arm64 file arm64 1:5.46-5 [43.7 kB] Get: 19 http://deb.debian.org/debian forky/main arm64 gettext-base arm64 0.23.1-2+b1 [241 kB] Get: 20 http://deb.debian.org/debian forky/main arm64 libuchardet0 arm64 0.0.8-2 [69.0 kB] Get: 21 http://deb.debian.org/debian forky/main arm64 groff-base arm64 1.23.0-9 [1130 kB] Get: 22 http://deb.debian.org/debian forky/main arm64 bsdextrautils arm64 2.41.2-4 [97.3 kB] Get: 23 http://deb.debian.org/debian forky/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 24 http://deb.debian.org/debian forky/main arm64 man-db arm64 2.13.1-1 [1453 kB] Get: 25 http://deb.debian.org/debian forky/main arm64 m4 arm64 1.4.20-2 [315 kB] Get: 26 http://deb.debian.org/debian forky/main arm64 autoconf all 2.72-3.1 [494 kB] Get: 27 http://deb.debian.org/debian forky/main arm64 autotools-dev all 20240727.1 [60.2 kB] Get: 28 http://deb.debian.org/debian forky/main arm64 automake all 1:1.18.1-2 [877 kB] Get: 29 http://deb.debian.org/debian forky/main arm64 autopoint all 0.23.1-2 [770 kB] Get: 30 http://deb.debian.org/debian forky/main arm64 libcom-err2 arm64 1.47.2-3+b3 [24.9 kB] Get: 31 http://deb.debian.org/debian forky/main arm64 comerr-dev arm64 2.1-1.47.2-3+b3 [56.9 kB] Get: 32 http://deb.debian.org/debian forky/main arm64 libdebhelper-perl all 13.28 [92.4 kB] Get: 33 http://deb.debian.org/debian forky/main arm64 libtool all 2.5.4-7 [540 kB] Get: 34 http://deb.debian.org/debian forky/main arm64 dh-autoreconf all 21 [12.2 kB] Get: 35 http://deb.debian.org/debian forky/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 36 http://deb.debian.org/debian forky/main arm64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 37 http://deb.debian.org/debian forky/main arm64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 38 http://deb.debian.org/debian forky/main arm64 libelf1t64 arm64 0.193-3 [189 kB] Get: 39 http://deb.debian.org/debian forky/main arm64 dwz arm64 0.16-2 [100 kB] Get: 40 http://deb.debian.org/debian forky/main arm64 libunistring5 arm64 1.3-2 [453 kB] Get: 41 http://deb.debian.org/debian forky/main arm64 libxml2-16 arm64 2.14.6+dfsg-0.1 [601 kB] Get: 42 http://deb.debian.org/debian forky/main arm64 gettext arm64 0.23.1-2+b1 [1612 kB] Get: 43 http://deb.debian.org/debian forky/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 44 http://deb.debian.org/debian forky/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 45 http://deb.debian.org/debian forky/main arm64 debhelper all 13.28 [941 kB] Get: 46 http://deb.debian.org/debian forky/main arm64 gcc-14-base arm64 14.3.0-10 [52.4 kB] Get: 47 http://deb.debian.org/debian forky/main arm64 googletest all 1.17.0-1 [522 kB] Get: 48 http://deb.debian.org/debian forky/main arm64 hdf5-helpers arm64 1.14.5+repack-4 [26.7 kB] Get: 49 http://deb.debian.org/debian forky/main arm64 libkrb5support0 arm64 1.21.3-5 [32.4 kB] Get: 50 http://deb.debian.org/debian forky/main arm64 libk5crypto3 arm64 1.21.3-5 [81.2 kB] Get: 51 http://deb.debian.org/debian forky/main arm64 libkeyutils1 arm64 1.6.3-6 [9716 B] Get: 52 http://deb.debian.org/debian forky/main arm64 libkrb5-3 arm64 1.21.3-5 [308 kB] Get: 53 http://deb.debian.org/debian forky/main arm64 libgssapi-krb5-2 arm64 1.21.3-5 [127 kB] Get: 54 http://deb.debian.org/debian forky/main arm64 libgssrpc4t64 arm64 1.21.3-5 [57.2 kB] Get: 55 http://deb.debian.org/debian forky/main arm64 libkadm5clnt-mit12 arm64 1.21.3-5 [41.1 kB] Get: 56 http://deb.debian.org/debian forky/main arm64 libkdb5-10t64 arm64 1.21.3-5 [41.3 kB] Get: 57 http://deb.debian.org/debian forky/main arm64 libkadm5srv-mit12 arm64 1.21.3-5 [53.0 kB] Get: 58 http://deb.debian.org/debian forky/main arm64 krb5-multidev arm64 1.21.3-5 [126 kB] Get: 59 http://deb.debian.org/debian forky/main arm64 libaec0 arm64 1.1.4-2 [22.6 kB] Get: 60 http://deb.debian.org/debian forky/main arm64 libsz2 arm64 1.1.4-2 [8072 B] Get: 61 http://deb.debian.org/debian forky/main arm64 libaec-dev arm64 1.1.4-2 [20.3 kB] Get: 62 http://deb.debian.org/debian forky/main arm64 libnghttp3-9 arm64 1.12.0-1 [63.6 kB] Get: 63 http://deb.debian.org/debian forky/main arm64 libngtcp2-16 arm64 1.16.0-1 [123 kB] Get: 64 http://deb.debian.org/debian forky/main arm64 libbrotli1 arm64 1.1.0-2+b7 [308 kB] Get: 65 http://deb.debian.org/debian forky/main arm64 libidn2-0 arm64 2.3.8-4 [108 kB] Get: 66 http://deb.debian.org/debian forky/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-10 [19.8 kB] Get: 67 http://deb.debian.org/debian forky/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-10 [55.0 kB] Get: 68 http://deb.debian.org/debian forky/main arm64 libldap2 arm64 2.6.10+dfsg-1 [179 kB] Get: 69 http://deb.debian.org/debian forky/main arm64 libnghttp2-14 arm64 1.64.0-1.1+b1 [71.7 kB] Get: 70 http://deb.debian.org/debian forky/main arm64 libngtcp2-crypto-ossl0 arm64 1.16.0-1 [25.7 kB] Get: 71 http://deb.debian.org/debian forky/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB] Get: 72 http://deb.debian.org/debian forky/main arm64 libp11-kit0 arm64 0.25.9-2 [420 kB] Get: 73 http://deb.debian.org/debian forky/main arm64 libtasn1-6 arm64 4.20.0-2 [47.3 kB] Get: 74 http://deb.debian.org/debian forky/main arm64 libgnutls30t64 arm64 3.8.10-3 [1384 kB] Get: 75 http://deb.debian.org/debian forky/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-3 [56.3 kB] Get: 76 http://deb.debian.org/debian forky/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Get: 77 http://deb.debian.org/debian forky/main arm64 libcurl4t64 arm64 8.17.0~rc2-1 [369 kB] Get: 78 http://deb.debian.org/debian forky/main arm64 libhdf5-310 arm64 1.14.5+repack-4 [1177 kB] Get: 79 http://deb.debian.org/debian forky/main arm64 libhdf5-cpp-310 arm64 1.14.5+repack-4 [129 kB] Get: 80 http://deb.debian.org/debian forky/main arm64 libngtcp2-crypto-gnutls8 arm64 1.16.0-1 [23.8 kB] Get: 81 http://deb.debian.org/debian forky/main arm64 libcurl3t64-gnutls arm64 8.17.0~rc2-1 [363 kB] Get: 82 http://deb.debian.org/debian forky/main arm64 libdeflate0 arm64 1.23-2 [42.4 kB] Get: 83 http://deb.debian.org/debian forky/main arm64 libhtscodecs2 arm64 1.6.1-2 [74.7 kB] Get: 84 http://deb.debian.org/debian forky/main arm64 libhts3t64 arm64 1.22.1+ds2-1 [434 kB] Get: 85 http://deb.debian.org/debian forky/main arm64 libpbcopper2.3.0 arm64 2.3.0+dfsg-4 [623 kB] Get: 86 http://deb.debian.org/debian forky/main arm64 libpbbam2.4.0 arm64 2.4.0+dfsg-2 [693 kB] Get: 87 http://deb.debian.org/debian forky/main arm64 libblasr5.3.5 arm64 5.3.5+dfsg-11 [1065 kB] Get: 88 http://deb.debian.org/debian forky/main arm64 libpbcopper-dev arm64 2.3.0+dfsg-4 [984 kB] Get: 89 http://deb.debian.org/debian forky/main arm64 libpbdata-dev arm64 5.3.5+dfsg-11 [40.9 kB] Get: 90 http://deb.debian.org/debian forky/main arm64 libgfortran5 arm64 15.2.0-7 [371 kB] Get: 91 http://deb.debian.org/debian forky/main arm64 libhdf5-fortran-310 arm64 1.14.5+repack-4 [114 kB] Get: 92 http://deb.debian.org/debian forky/main arm64 libhdf5-hl-310 arm64 1.14.5+repack-4 [68.4 kB] Get: 93 http://deb.debian.org/debian forky/main arm64 libhdf5-hl-fortran-310 arm64 1.14.5+repack-4 [44.5 kB] Get: 94 http://deb.debian.org/debian forky/main arm64 libhdf5-hl-cpp-310 arm64 1.14.5+repack-4 [24.9 kB] Get: 95 http://deb.debian.org/debian forky/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Get: 96 http://deb.debian.org/debian forky/main arm64 libjpeg62-turbo arm64 1:2.1.5-4 [173 kB] Get: 97 http://deb.debian.org/debian forky/main arm64 libjpeg62-turbo-dev arm64 1:2.1.5-4 [293 kB] Get: 98 http://deb.debian.org/debian forky/main arm64 libjpeg-dev arm64 1:2.1.5-4 [72.2 kB] Get: 99 http://deb.debian.org/debian forky/main arm64 libbrotli-dev arm64 1.1.0-2+b7 [308 kB] Get: 100 http://deb.debian.org/debian forky/main arm64 libevent-2.1-7t64 arm64 2.1.12-stable-10+b1 [170 kB] Get: 101 http://deb.debian.org/debian forky/main arm64 libunbound8 arm64 1.24.1-1 [559 kB] Get: 102 http://deb.debian.org/debian forky/main arm64 libgnutls-dane0t64 arm64 3.8.10-3 [456 kB] Get: 103 http://deb.debian.org/debian forky/main arm64 libgnutls-openssl27t64 arm64 3.8.10-3 [455 kB] Get: 104 http://deb.debian.org/debian forky/main arm64 libidn2-dev arm64 2.3.8-4 [102 kB] Get: 105 http://deb.debian.org/debian forky/main arm64 libp11-kit-dev arm64 0.25.9-2 [220 kB] Get: 106 http://deb.debian.org/debian forky/main arm64 libtasn1-6-dev arm64 4.20.0-2 [96.7 kB] Get: 107 http://deb.debian.org/debian forky/main arm64 libgmpxx4ldbl arm64 2:6.3.0+dfsg-5 [329 kB] Get: 108 http://deb.debian.org/debian forky/main arm64 libgmp-dev arm64 2:6.3.0+dfsg-5 [621 kB] Get: 109 http://deb.debian.org/debian forky/main arm64 nettle-dev arm64 3.10.2-1 [1319 kB] Get: 110 http://deb.debian.org/debian forky/main arm64 libgnutls28-dev arm64 3.8.10-3 [1414 kB] Get: 111 http://deb.debian.org/debian forky/main arm64 libkrb5-dev arm64 1.21.3-5 [16.1 kB] Get: 112 http://deb.debian.org/debian forky/main arm64 libldap-dev arm64 2.6.10+dfsg-1 [305 kB] Get: 113 http://deb.debian.org/debian forky/main arm64 libpkgconf3 arm64 1.8.1-4 [35.3 kB] Get: 114 http://deb.debian.org/debian forky/main arm64 pkgconf-bin arm64 1.8.1-4 [29.6 kB] Get: 115 http://deb.debian.org/debian forky/main arm64 pkgconf arm64 1.8.1-4 [26.1 kB] Get: 116 http://deb.debian.org/debian forky/main arm64 libnghttp2-dev arm64 1.64.0-1.1+b1 [112 kB] Get: 117 http://deb.debian.org/debian forky/main arm64 libnghttp3-dev arm64 1.12.0-1 [91.6 kB] Get: 118 http://deb.debian.org/debian forky/main arm64 libngtcp2-crypto-gnutls-dev arm64 1.16.0-1 [24.6 kB] Get: 119 http://deb.debian.org/debian forky/main arm64 libngtcp2-dev arm64 1.16.0-1 [183 kB] Get: 120 http://deb.debian.org/debian forky/main arm64 libpsl-dev arm64 0.21.2-1.1+b1 [77.9 kB] Get: 121 http://deb.debian.org/debian forky/main arm64 librtmp-dev arm64 2.4+20151223.gitfa8646d.1-3 [173 kB] Get: 122 http://deb.debian.org/debian forky/main arm64 libssl-dev arm64 3.5.4-1 [3377 kB] Get: 123 http://deb.debian.org/debian forky/main arm64 libssh2-1-dev arm64 1.11.1-1 [388 kB] Get: 124 http://deb.debian.org/debian forky/main arm64 libzstd-dev arm64 1.5.7+dfsg-2 [330 kB] Get: 125 http://deb.debian.org/debian forky/main arm64 libcurl4-gnutls-dev arm64 8.17.0~rc2-1 [498 kB] Get: 126 http://deb.debian.org/debian forky/main arm64 libhdf5-dev arm64 1.14.5+repack-4 [3219 kB] Get: 127 http://deb.debian.org/debian forky/main arm64 libbz2-dev arm64 1.0.8-6 [31.9 kB] Get: 128 http://deb.debian.org/debian forky/main arm64 libdeflate-dev arm64 1.23-2 [51.3 kB] Get: 129 http://deb.debian.org/debian forky/main arm64 liblzma-dev arm64 5.8.1-2 [344 kB] Get: 130 http://deb.debian.org/debian forky/main arm64 libhts-dev arm64 1.22.1+ds2-1 [1684 kB] Get: 131 http://deb.debian.org/debian forky/main arm64 libpbbam-dev arm64 2.4.0+dfsg-2 [88.2 kB] Get: 132 http://deb.debian.org/debian forky/main arm64 libblasr-dev arm64 5.3.5+dfsg-11 [2093 kB] Get: 133 http://deb.debian.org/debian forky/main arm64 libgcc-14-dev arm64 14.3.0-10 [2366 kB] Get: 134 http://deb.debian.org/debian forky/main arm64 libstdc++-14-dev arm64 14.3.0-10 [2568 kB] Get: 135 http://deb.debian.org/debian forky/main arm64 libboost1.83-dev arm64 1.83.0-5 [10.6 MB] Get: 136 http://deb.debian.org/debian forky/main arm64 libboost-dev arm64 1.83.0.2+b2 [3828 B] Get: 137 http://deb.debian.org/debian forky/main arm64 libpbihdf-dev arm64 5.3.5+dfsg-11 [47.4 kB] Get: 138 http://deb.debian.org/debian forky/main arm64 libpbseq-dev arm64 5.3.5+dfsg-11 [5148 B] Get: 139 http://deb.debian.org/debian forky/main arm64 libtclap-dev arm64 1.2.5-1+b2 [3360 kB] Fetched 68.3 MB in 1s (116 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19971 files and directories currently installed.) Preparing to unpack .../libexpat1_2.7.3-1_arm64.deb ... Unpacking libexpat1:arm64 (2.7.3-1) ... Selecting previously unselected package libpython3.13-minimal:arm64. Preparing to unpack .../libpython3.13-minimal_3.13.9-1_arm64.deb ... Unpacking libpython3.13-minimal:arm64 (3.13.9-1) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../python3.13-minimal_3.13.9-1_arm64.deb ... Unpacking python3.13-minimal (3.13.9-1) ... Setting up libpython3.13-minimal:arm64 (3.13.9-1) ... Setting up libexpat1:arm64 (2.7.3-1) ... Setting up python3.13-minimal (3.13.9-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20305 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.13.7-1_arm64.deb ... Unpacking python3-minimal (3.13.7-1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_14.0.0_all.deb ... Unpacking media-types (14.0.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.5_all.deb ... Unpacking netbase (6.5) ... Selecting previously unselected package tzdata. Preparing to unpack .../3-tzdata_2025b-5_all.deb ... Unpacking tzdata (2025b-5) ... Selecting previously unselected package libffi8:arm64. Preparing to unpack .../4-libffi8_3.5.2-2_arm64.deb ... Unpacking libffi8:arm64 (3.5.2-2) ... Selecting previously unselected package readline-common. Preparing to unpack .../5-readline-common_8.3-3_all.deb ... Unpacking readline-common (8.3-3) ... Selecting previously unselected package libreadline8t64:arm64. Preparing to unpack .../6-libreadline8t64_8.3-3_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.3-3) ... Selecting previously unselected package libpython3.13-stdlib:arm64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.9-1_arm64.deb ... Unpacking libpython3.13-stdlib:arm64 (3.13.9-1) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.9-1_arm64.deb ... Unpacking python3.13 (3.13.9-1) ... Selecting previously unselected package libpython3-stdlib:arm64. Preparing to unpack .../9-libpython3-stdlib_3.13.7-1_arm64.deb ... Unpacking libpython3-stdlib:arm64 (3.13.7-1) ... Setting up python3-minimal (3.13.7-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21320 files and directories currently installed.) Preparing to unpack .../000-python3_3.13.7-1_arm64.deb ... Unpacking python3 (3.13.7-1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../001-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../002-libmagic-mgc_1%3a5.46-5_arm64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../003-libmagic1t64_1%3a5.46-5_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../004-file_1%3a5.46-5_arm64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../005-gettext-base_0.23.1-2+b1_arm64.deb ... Unpacking gettext-base (0.23.1-2+b1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../006-libuchardet0_0.0.8-2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-2) ... Selecting previously unselected package groff-base. Preparing to unpack .../007-groff-base_1.23.0-9_arm64.deb ... Unpacking groff-base (1.23.0-9) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../008-bsdextrautils_2.41.2-4_arm64.deb ... Unpacking bsdextrautils (2.41.2-4) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../009-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../010-man-db_2.13.1-1_arm64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../011-m4_1.4.20-2_arm64.deb ... Unpacking m4 (1.4.20-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../012-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../013-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../014-automake_1%3a1.18.1-2_all.deb ... Unpacking automake (1:1.18.1-2) ... Selecting previously unselected package autopoint. Preparing to unpack .../015-autopoint_0.23.1-2_all.deb ... Unpacking autopoint (0.23.1-2) ... Selecting previously unselected package libcom-err2:arm64. Preparing to unpack .../016-libcom-err2_1.47.2-3+b3_arm64.deb ... Unpacking libcom-err2:arm64 (1.47.2-3+b3) ... Selecting previously unselected package comerr-dev:arm64. Preparing to unpack .../017-comerr-dev_2.1-1.47.2-3+b3_arm64.deb ... Unpacking comerr-dev:arm64 (2.1-1.47.2-3+b3) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../018-libdebhelper-perl_13.28_all.deb ... Unpacking libdebhelper-perl (13.28) ... Selecting previously unselected package libtool. Preparing to unpack .../019-libtool_2.5.4-7_all.deb ... Unpacking libtool (2.5.4-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../020-dh-autoreconf_21_all.deb ... Unpacking dh-autoreconf (21) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../021-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../022-libfile-stripnondeterminism-perl_1.15.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.15.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../023-dh-strip-nondeterminism_1.15.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.15.0-1) ... Selecting previously unselected package libelf1t64:arm64. Preparing to unpack .../024-libelf1t64_0.193-3_arm64.deb ... Unpacking libelf1t64:arm64 (0.193-3) ... Selecting previously unselected package dwz. Preparing to unpack .../025-dwz_0.16-2_arm64.deb ... Unpacking dwz (0.16-2) ... Selecting previously unselected package libunistring5:arm64. Preparing to unpack .../026-libunistring5_1.3-2_arm64.deb ... Unpacking libunistring5:arm64 (1.3-2) ... Selecting previously unselected package libxml2-16:arm64. Preparing to unpack .../027-libxml2-16_2.14.6+dfsg-0.1_arm64.deb ... Unpacking libxml2-16:arm64 (2.14.6+dfsg-0.1) ... Selecting previously unselected package gettext. Preparing to unpack .../028-gettext_0.23.1-2+b1_arm64.deb ... Unpacking gettext (0.23.1-2+b1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../029-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../030-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../031-debhelper_13.28_all.deb ... Unpacking debhelper (13.28) ... Selecting previously unselected package gcc-14-base:arm64. Preparing to unpack .../032-gcc-14-base_14.3.0-10_arm64.deb ... Unpacking gcc-14-base:arm64 (14.3.0-10) ... Selecting previously unselected package googletest. Preparing to unpack .../033-googletest_1.17.0-1_all.deb ... Unpacking googletest (1.17.0-1) ... Selecting previously unselected package hdf5-helpers. Preparing to unpack .../034-hdf5-helpers_1.14.5+repack-4_arm64.deb ... Unpacking hdf5-helpers (1.14.5+repack-4) ... Selecting previously unselected package libkrb5support0:arm64. Preparing to unpack .../035-libkrb5support0_1.21.3-5_arm64.deb ... Unpacking libkrb5support0:arm64 (1.21.3-5) ... Selecting previously unselected package libk5crypto3:arm64. Preparing to unpack .../036-libk5crypto3_1.21.3-5_arm64.deb ... Unpacking libk5crypto3:arm64 (1.21.3-5) ... Selecting previously unselected package libkeyutils1:arm64. Preparing to unpack .../037-libkeyutils1_1.6.3-6_arm64.deb ... Unpacking libkeyutils1:arm64 (1.6.3-6) ... Selecting previously unselected package libkrb5-3:arm64. Preparing to unpack .../038-libkrb5-3_1.21.3-5_arm64.deb ... Unpacking libkrb5-3:arm64 (1.21.3-5) ... Selecting previously unselected package libgssapi-krb5-2:arm64. Preparing to unpack .../039-libgssapi-krb5-2_1.21.3-5_arm64.deb ... Unpacking libgssapi-krb5-2:arm64 (1.21.3-5) ... Selecting previously unselected package libgssrpc4t64:arm64. Preparing to unpack .../040-libgssrpc4t64_1.21.3-5_arm64.deb ... Unpacking libgssrpc4t64:arm64 (1.21.3-5) ... Selecting previously unselected package libkadm5clnt-mit12:arm64. Preparing to unpack .../041-libkadm5clnt-mit12_1.21.3-5_arm64.deb ... Unpacking libkadm5clnt-mit12:arm64 (1.21.3-5) ... Selecting previously unselected package libkdb5-10t64:arm64. Preparing to unpack .../042-libkdb5-10t64_1.21.3-5_arm64.deb ... Unpacking libkdb5-10t64:arm64 (1.21.3-5) ... Selecting previously unselected package libkadm5srv-mit12:arm64. Preparing to unpack .../043-libkadm5srv-mit12_1.21.3-5_arm64.deb ... Unpacking libkadm5srv-mit12:arm64 (1.21.3-5) ... Selecting previously unselected package krb5-multidev:arm64. Preparing to unpack .../044-krb5-multidev_1.21.3-5_arm64.deb ... Unpacking krb5-multidev:arm64 (1.21.3-5) ... Selecting previously unselected package libaec0:arm64. Preparing to unpack .../045-libaec0_1.1.4-2_arm64.deb ... Unpacking libaec0:arm64 (1.1.4-2) ... Selecting previously unselected package libsz2:arm64. Preparing to unpack .../046-libsz2_1.1.4-2_arm64.deb ... Unpacking libsz2:arm64 (1.1.4-2) ... Selecting previously unselected package libaec-dev:arm64. Preparing to unpack .../047-libaec-dev_1.1.4-2_arm64.deb ... Unpacking libaec-dev:arm64 (1.1.4-2) ... Selecting previously unselected package libnghttp3-9:arm64. Preparing to unpack .../048-libnghttp3-9_1.12.0-1_arm64.deb ... Unpacking libnghttp3-9:arm64 (1.12.0-1) ... Selecting previously unselected package libngtcp2-16:arm64. Preparing to unpack .../049-libngtcp2-16_1.16.0-1_arm64.deb ... Unpacking libngtcp2-16:arm64 (1.16.0-1) ... Selecting previously unselected package libbrotli1:arm64. Preparing to unpack .../050-libbrotli1_1.1.0-2+b7_arm64.deb ... Unpacking libbrotli1:arm64 (1.1.0-2+b7) ... Selecting previously unselected package libidn2-0:arm64. Preparing to unpack .../051-libidn2-0_2.3.8-4_arm64.deb ... Unpacking libidn2-0:arm64 (2.3.8-4) ... Selecting previously unselected package libsasl2-modules-db:arm64. Preparing to unpack .../052-libsasl2-modules-db_2.1.28+dfsg1-10_arm64.deb ... Unpacking libsasl2-modules-db:arm64 (2.1.28+dfsg1-10) ... Selecting previously unselected package libsasl2-2:arm64. Preparing to unpack .../053-libsasl2-2_2.1.28+dfsg1-10_arm64.deb ... Unpacking libsasl2-2:arm64 (2.1.28+dfsg1-10) ... Selecting previously unselected package libldap2:arm64. Preparing to unpack .../054-libldap2_2.6.10+dfsg-1_arm64.deb ... Unpacking libldap2:arm64 (2.6.10+dfsg-1) ... 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Setting up libldap2:arm64 (2.6.10+dfsg-1) ... Setting up libbrotli-dev:arm64 (1.1.0-2+b7) ... Setting up libsz2:arm64 (1.1.4-2) ... Setting up libpbcopper2.3.0:arm64 (2.3.0+dfsg-4) ... Setting up libbz2-dev:arm64 (1.0.8-6) ... Setting up automake (1:1.18.1-2) ... update-alternatives: using /usr/bin/automake-1.18 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up libboost1.83-dev:arm64 (1.83.0-5) ... Setting up gettext (0.23.1-2+b1) ... Setting up libgmp-dev:arm64 (2:6.3.0+dfsg-5) ... Setting up nettle-dev:arm64 (3.10.2-1) ... Setting up libtool (2.5.4-7) ... Setting up libaec-dev:arm64 (1.1.4-2) ... Setting up libjpeg-dev:arm64 (1:2.1.5-4) ... Setting up libidn2-0:arm64 (2.3.8-4) ... Setting up libngtcp2-dev:arm64 (1.16.0-1) ... Setting up pkgconf:arm64 (1.8.1-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (21) ... Setting up libldap-dev:arm64 (2.6.10+dfsg-1) ... Setting up libp11-kit0:arm64 (0.25.9-2) ... Setting up libgssapi-krb5-2:arm64 (1.21.3-5) ... Setting up libpbcopper-dev:arm64 (2.3.0+dfsg-4) ... Setting up libssh2-1-dev:arm64 (1.11.1-1) ... Setting up libidn2-dev:arm64 (2.3.8-4) ... Setting up libngtcp2-crypto-ossl0:arm64 (1.16.0-1) ... Setting up libreadline8t64:arm64 (8.3-3) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up groff-base (1.23.0-9) ... Setting up libboost-dev:arm64 (1.83.0.2+b2) ... Setting up libpython3.13-stdlib:arm64 (3.13.9-1) ... Setting up libp11-kit-dev:arm64 (0.25.9-2) ... Setting up libpython3-stdlib:arm64 (3.13.7-1) ... Setting up libgnutls30t64:arm64 (3.8.10-3) ... Setting up libgnutls-openssl27t64:arm64 (3.8.10-3) ... Setting up libnghttp2-dev:arm64 (1.64.0-1.1+b1) ... Setting up python3.13 (3.13.9-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpsl5t64:arm64 (0.21.2-1.1+b1) ... Setting up libpbdata-dev:arm64 (5.3.5+dfsg-11) ... Setting up python3 (3.13.7-1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libpsl-dev:arm64 (0.21.2-1.1+b1) ... Setting up libgnutls-dane0t64:arm64 (3.8.10-3) ... Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-3) ... Setting up libgssrpc4t64:arm64 (1.21.3-5) ... Setting up libngtcp2-crypto-gnutls8:arm64 (1.16.0-1) ... Setting up libkadm5clnt-mit12:arm64 (1.21.3-5) ... Setting up libgnutls28-dev:arm64 (3.8.10-3) ... Setting up libcurl4t64:arm64 (8.17.0~rc2-1) ... Setting up libkdb5-10t64:arm64 (1.21.3-5) ... Setting up libcurl3t64-gnutls:arm64 (8.17.0~rc2-1) ... Setting up debhelper (13.28) ... Setting up libngtcp2-crypto-gnutls-dev:arm64 (1.16.0-1) ... Setting up librtmp-dev:arm64 (2.4+20151223.gitfa8646d.1-3) ... Setting up libhdf5-310:arm64 (1.14.5+repack-4) ... Setting up libkadm5srv-mit12:arm64 (1.21.3-5) ... Setting up libhts3t64:arm64 (1.22.1+ds2-1) ... Setting up libhdf5-fortran-310:arm64 (1.14.5+repack-4) ... Setting up krb5-multidev:arm64 (1.21.3-5) ... Setting up libhdf5-cpp-310:arm64 (1.14.5+repack-4) ... Setting up libhdf5-hl-310:arm64 (1.14.5+repack-4) ... Setting up libpbbam2.4.0:arm64 (2.4.0+dfsg-2) ... Setting up libblasr5.3.5:arm64 (5.3.5+dfsg-11) ... Setting up libkrb5-dev:arm64 (1.21.3-5) ... Setting up libhdf5-hl-cpp-310:arm64 (1.14.5+repack-4) ... Setting up libhdf5-hl-fortran-310:arm64 (1.14.5+repack-4) ... Setting up libcurl4-gnutls-dev:arm64 (8.17.0~rc2-1) ... Setting up libhdf5-dev (1.14.5+repack-4) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/aarch64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up libpbihdf-dev:arm64 (5.3.5+dfsg-11) ... Setting up libhts-dev:arm64 (1.22.1+ds2-1) ... Setting up libpbbam-dev:arm64 (2.4.0+dfsg-2) ... Setting up libblasr-dev:arm64 (5.3.5+dfsg-11) ... Setting up libpbseq-dev:arm64 (5.3.5+dfsg-11) ... Processing triggers for libc-bin (2.41-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/2819095/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for forky I: user script /srv/workspace/pbuilder/2819095/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../pbdagcon_0.3+git20180411.c14c422+dfsg-9_source.changes dpkg-buildpackage: info: source package pbdagcon dpkg-buildpackage: info: source version 0.3+git20180411.c14c422+dfsg-9 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_auto_clean make -j12 clean make[1]: Entering directory '/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg' make -C src/cpp clean make[2]: Entering directory '/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/src/cpp' rm -f *.d rm -f *.o rm -f pbdagcon rm -f dazcon make[2]: Leaving directory '/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/src/cpp' make -C test/cpp clean make[2]: Entering directory '/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/test/cpp' rm -f .//*.o rm -f *.o rm -f test_* make[2]: Leaving directory '/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/test/cpp' make[1]: Leaving directory '/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg' ./configure.py --shared uname -s uname='Linux' writing to '/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/defines.mk' """ DALIGNER_INCLUDE ?= ${DALIGNER_SRC} DALIGNER_SRC ?= /build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/daligner-include DAZZ_DB_INCLUDE ?= ${DAZZ_DB_SRC} DAZZ_DB_SRC ?= /build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include GTEST_INCLUDE ?= /usr/src/googletest/googletest/include GTEST_SRC ?= /usr/src/googletest/googletest/src HDF5_LIB ?= /usr/lib/aarch64-linux-gnu/hdf5/serial HDF5_LIBFLAGS ?= -lhdf5_cpp -lhdf5 HTSLIB_LIBS ?= -lhts LIBBLASR_INCLUDE ?= /usr/include/pbseq/alignment LIBBLASR_LIBFLAGS ?= -lblasr LIBPBDATA_INCLUDE ?= /usr/include/pbseq/pbdata LIBPBIHDF_INCLUDE ?= /usr/include/pbseq/hdf PBBAM_INCLUDE ?= /usr/include/pbseq PBBAM_LIBFLAGS ?= -lpbbam PTHREAD_LIBFLAGS ?= -lpthread ZLIB_LIBFLAGS ?= -lz LDLIBS+=-lrt """ make[1]: Leaving directory '/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg' dh_auto_build make -j12 INSTALL="install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg' make -C src/cpp make[2]: Entering directory '/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/src/cpp' g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wall -Wuninitialized -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -MMD -MP -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/daligner-include -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -I/usr/include/pbseq -isystem.//third-party -c -o Alignment.o Alignment.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wall -Wuninitialized -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -MMD -MP -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/daligner-include -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -I/usr/include/pbseq -isystem.//third-party -c -o AlnGraphBoost.o AlnGraphBoost.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wall -Wuninitialized -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -MMD -MP -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/daligner-include -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -I/usr/include/pbseq -isystem.//third-party -c -o BlasrM5AlnProvider.o BlasrM5AlnProvider.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wall -Wuninitialized -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -MMD -MP -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/daligner-include -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -I/usr/include/pbseq -isystem.//third-party -c -o main.o main.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wall -Wuninitialized -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -MMD -MP -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/daligner-include -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -I/usr/include/pbseq -isystem.//third-party -c -o SimpleAligner.o SimpleAligner.cpp cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wall -Wextra -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -MMD -MP -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/daligner-include -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -I/usr/include/pbseq -isystem.//third-party -c -o DB.o /build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include/DB.c cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wall -Wextra -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -MMD -MP -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/daligner-include -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -I/usr/include/pbseq -isystem.//third-party -c -o QV.o /build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include/QV.c cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wall -Wextra -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -MMD -MP -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/daligner-include -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -I/usr/include/pbseq -isystem.//third-party -c -o align.o /build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/daligner-include/align.c g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wall -Wuninitialized -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -MMD -MP -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/daligner-include -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -I/usr/include/pbseq -isystem.//third-party -c -o DazAlnProvider.o DazAlnProvider.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wall -Wuninitialized -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -MMD -MP -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/daligner-include -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -I/usr/include/pbseq -isystem.//third-party -c -o dazcon.o dazcon.cpp /build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include/DB.c: In function 'Open_QVs': /build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include/DB.c:2415:16: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 2415 | (void) fscanf(istub,DB_NFILE,&nfiles); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include/DB.c:2419:20: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 2419 | { (void) fscanf(istub,DB_FDATA,&last,fname,prolog); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include/DB.c:2424:20: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 2424 | { (void) fscanf(istub,DB_FDATA,&last,fname,prolog); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o dazcon Alignment.o AlnGraphBoost.o DB.o QV.o align.o DazAlnProvider.o dazcon.o -Wl,-z,relro -L /usr/lib/aarch64-linux-gnu/hdf5/serial -lrt -lblasr -lpbbam -lhdf5_cpp -lhdf5 -lhts -lz -lpthread g++ -o pbdagcon Alignment.o AlnGraphBoost.o BlasrM5AlnProvider.o main.o SimpleAligner.o -Wl,-z,relro -L /usr/lib/aarch64-linux-gnu/hdf5/serial -lrt -lblasr -lpbbam -lhdf5_cpp -lhdf5 -lhts -lz -lpthread make[2]: Leaving directory '/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/src/cpp' make[1]: Leaving directory '/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg' dh: command-omitted: The call to "dh_auto_test" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/pbdagcon/ dh_install dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'pbdagcon-dbgsym' in '../pbdagcon-dbgsym_0.3+git20180411.c14c422+dfsg-9_arm64.deb'. dpkg-deb: building package 'pbdagcon' in '../pbdagcon_0.3+git20180411.c14c422+dfsg-9_arm64.deb'. dpkg-genbuildinfo --build=binary -O../pbdagcon_0.3+git20180411.c14c422+dfsg-9_arm64.buildinfo dpkg-genchanges --build=binary -O../pbdagcon_0.3+git20180411.c14c422+dfsg-9_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/2819095/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/2819095/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2819095 and its subdirectories I: Current time: Sat Nov 1 10:42:34 +14 2025 I: pbuilder-time-stamp: 1761943354 + false + set +x Fri Oct 31 20:42:34 UTC 2025 I: Signing ./b2/pbdagcon_0.3+git20180411.c14c422+dfsg-9_arm64.buildinfo as pbdagcon_0.3+git20180411.c14c422+dfsg-9_arm64.buildinfo.asc Fri Oct 31 20:42:34 UTC 2025 I: Signed ./b2/pbdagcon_0.3+git20180411.c14c422+dfsg-9_arm64.buildinfo as ./b2/pbdagcon_0.3+git20180411.c14c422+dfsg-9_arm64.buildinfo.asc Fri Oct 31 20:42:34 UTC 2025 - build #2 for pbdagcon/forky/arm64 on codethink04-arm64 done. Starting cleanup. All cleanup done. Fri Oct 31 20:42:34 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-jnO50Ckt, removing. /srv/reproducible-results/rbuild-debian/r-b-build.zQTnpsm6: total 104 drwxrwxr-x 2 jenkins jenkins 4096 Oct 31 20:41 b1 drwxrwxr-x 2 jenkins jenkins 4096 Oct 31 20:42 b2 -rw-rw-r-- 1 jenkins jenkins 2538 Sep 23 2024 pbdagcon_0.3+git20180411.c14c422+dfsg-9.dsc -rw------- 1 jenkins jenkins 87938 Oct 31 20:41 rbuildlog.ohfr68k /srv/reproducible-results/rbuild-debian/r-b-build.zQTnpsm6/b1: total 6044 -rw-r--r-- 1 jenkins jenkins 83869 Oct 31 20:41 build.log -rw-r--r-- 1 jenkins jenkins 5628928 Oct 31 20:41 pbdagcon-dbgsym_0.3+git20180411.c14c422+dfsg-9_arm64.deb -rw-r--r-- 1 jenkins jenkins 58140 Oct 31 20:41 pbdagcon_0.3+git20180411.c14c422+dfsg-9.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2538 Oct 31 20:41 pbdagcon_0.3+git20180411.c14c422+dfsg-9.dsc -rw-r--r-- 1 jenkins jenkins 8480 Oct 31 20:41 pbdagcon_0.3+git20180411.c14c422+dfsg-9_arm64.buildinfo -rw-rw-r-- 1 jenkins jenkins 9362 Oct 31 20:41 pbdagcon_0.3+git20180411.c14c422+dfsg-9_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1775 Oct 31 20:41 pbdagcon_0.3+git20180411.c14c422+dfsg-9_arm64.changes -rw-r--r-- 1 jenkins jenkins 346040 Oct 31 20:41 pbdagcon_0.3+git20180411.c14c422+dfsg-9_arm64.deb -rw-r--r-- 1 jenkins jenkins 1630 Oct 31 20:41 pbdagcon_0.3+git20180411.c14c422+dfsg-9_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.zQTnpsm6/b2: total 6008 -rw-rw-r-- 1 jenkins jenkins 71081 Oct 31 20:42 build.log -rw-r--r-- 1 jenkins jenkins 5628928 Oct 31 20:42 pbdagcon-dbgsym_0.3+git20180411.c14c422+dfsg-9_arm64.deb -rw-r--r-- 1 jenkins jenkins 58140 Oct 31 20:42 pbdagcon_0.3+git20180411.c14c422+dfsg-9.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2538 Oct 31 20:42 pbdagcon_0.3+git20180411.c14c422+dfsg-9.dsc -rw-rw-r-- 1 jenkins jenkins 8488 Oct 31 20:42 pbdagcon_0.3+git20180411.c14c422+dfsg-9_arm64.buildinfo -rw-rw-r-- 1 jenkins jenkins 9370 Oct 31 20:42 pbdagcon_0.3+git20180411.c14c422+dfsg-9_arm64.buildinfo.asc -rw-rw-r-- 1 jenkins jenkins 1775 Oct 31 20:42 pbdagcon_0.3+git20180411.c14c422+dfsg-9_arm64.changes -rw-r--r-- 1 jenkins jenkins 346040 Oct 31 20:42 pbdagcon_0.3+git20180411.c14c422+dfsg-9_arm64.deb -rw-rw-r-- 1 jenkins jenkins 1630 Oct 31 20:42 pbdagcon_0.3+git20180411.c14c422+dfsg-9_source.changes Fri Oct 31 20:42:35 UTC 2025 I: Deleting $TMPDIR on codethink04-arm64.debian.net. Fri Oct 31 20:42:35 UTC 2025 I: pbdagcon_0.3+git20180411.c14c422+dfsg-9_arm64.changes: Format: 1.8 Date: Mon, 23 Sep 2024 21:36:37 +0200 Source: pbdagcon Binary: pbdagcon pbdagcon-dbgsym Architecture: arm64 Version: 0.3+git20180411.c14c422+dfsg-9 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: pbdagcon - sequence consensus using directed acyclic graphs Closes: 1082216 Changes: pbdagcon (0.3+git20180411.c14c422+dfsg-9) unstable; urgency=medium . * Team upload. . [ Paul Mars ] * Adapt target.dam checksum following dazzcon update (Closes: #1082216) . [ Étienne Mollier ] * d/control: declare compliance to standards version 4.7.0. Checksums-Sha1: a19e44d81dbc18bdf509fcdd90e7bc964b9f7f52 5628928 pbdagcon-dbgsym_0.3+git20180411.c14c422+dfsg-9_arm64.deb a08a4d297f6c37e2443a9b9665c2e87189cd98e3 8480 pbdagcon_0.3+git20180411.c14c422+dfsg-9_arm64.buildinfo c320adf69054229e7506bcf8f02e51beb1d1df6a 346040 pbdagcon_0.3+git20180411.c14c422+dfsg-9_arm64.deb Checksums-Sha256: f8a89aabe8a751bcc510b81999db7d41e359fb518704b7429b8f16cbb720d65c 5628928 pbdagcon-dbgsym_0.3+git20180411.c14c422+dfsg-9_arm64.deb 01796693f133d34523656ac9ba1e05d3e1167bda11718068dd2787e41fcb82b9 8480 pbdagcon_0.3+git20180411.c14c422+dfsg-9_arm64.buildinfo 58f3871c307b2672a245904d14ee5aa3eb8abb077605fa7c9c1ad8457431bef0 346040 pbdagcon_0.3+git20180411.c14c422+dfsg-9_arm64.deb Files: 8aa37c7a639d37202a181baeb5c413fa 5628928 debug optional pbdagcon-dbgsym_0.3+git20180411.c14c422+dfsg-9_arm64.deb 099c57f4d35ab801beebbc3d1a97ff79 8480 science optional pbdagcon_0.3+git20180411.c14c422+dfsg-9_arm64.buildinfo 18dcf4a1529a2ab7651195767af3f16a 346040 science optional pbdagcon_0.3+git20180411.c14c422+dfsg-9_arm64.deb removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/forky/arm64/pbdagcon_0.3+git20180411.c14c422+dfsg-9.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/forky/arm64/pbdagcon_0.3+git20180411.c14c422+dfsg-9.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/forky/arm64/pbdagcon_0.3+git20180411.c14c422+dfsg-9.build1.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/forky/arm64/pbdagcon_0.3+git20180411.c14c422+dfsg-9.build2.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/buildinfo/forky/arm64/pbdagcon_0.3+git20180411.c14c422+dfsg-9_arm64.buildinfo' removed '/var/lib/jenkins/userContent/reproducible/debian/logdiffs/forky/arm64/pbdagcon_0.3+git20180411.c14c422+dfsg-9.diff.gz' Diff of the two buildlogs: -- --- b1/build.log 2025-10-31 20:41:12.253067136 +0000 +++ b2/build.log 2025-10-31 20:42:34.905171952 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Thu Dec 3 15:02:32 -12 2026 -I: pbuilder-time-stamp: 1796353352 +I: Current time: Sat Nov 1 10:41:14 +14 2025 +I: pbuilder-time-stamp: 1761943274 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration @@ -26,53 +26,85 @@ dpkg-source: info: applying libdata_libpbihdf.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/2777547/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/2819095/tmp/hooks/D01_modify_environment starting +debug: Running on codethink04-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Oct 31 20:41 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/2819095/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/2819095/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='forky' - HOME='/root' - HOST_ARCH='arm64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.3.3(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 nocheck' + DIRSTACK=() + DISTRIBUTION=forky + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='5748f5eaa02b4fde9cc963781c970e5d' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='2777547' - PS1='# ' - PS2='> ' + INVOCATION_ID=51da06dc92ae40c3a0de50bdb069eab6 + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=2819095 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.zQTnpsm6/pbuilderrc_0QAT --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.zQTnpsm6/b1 --logfile b1/build.log pbdagcon_0.3+git20180411.c14c422+dfsg-9.dsc' - SUDO_GID='109' - SUDO_HOME='/var/lib/jenkins' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.zQTnpsm6/pbuilderrc_8ekl --distribution forky --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.zQTnpsm6/b2 --logfile b2/build.log pbdagcon_0.3+git20180411.c14c422+dfsg-9.dsc' + SUDO_GID=109 + SUDO_HOME=/var/lib/jenkins + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink03-arm64 6.12.48+deb13-cloud-arm64 #1 SMP Debian 6.12.48-1 (2025-09-20) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.12.48+deb13-cloud-arm64 #1 SMP Debian 6.12.48-1 (2025-09-20) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/2777547/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/2819095/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -268,7 +300,7 @@ Get: 137 http://deb.debian.org/debian forky/main arm64 libpbihdf-dev arm64 5.3.5+dfsg-11 [47.4 kB] Get: 138 http://deb.debian.org/debian forky/main arm64 libpbseq-dev arm64 5.3.5+dfsg-11 [5148 B] Get: 139 http://deb.debian.org/debian forky/main arm64 libtclap-dev arm64 1.2.5-1+b2 [3360 kB] -Fetched 68.3 MB in 1s (74.9 MB/s) +Fetched 68.3 MB in 1s (116 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19971 files and directories currently installed.) @@ -727,8 +759,8 @@ Setting up tzdata (2025b-5) ... Current default time zone: 'Etc/UTC' -Local time is now: Fri Dec 4 03:02:58 UTC 2026. -Universal Time is now: Fri Dec 4 03:02:58 UTC 2026. +Local time is now: Fri Oct 31 20:41:41 UTC 2025. +Universal Time is now: Fri Oct 31 20:41:41 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20240727.1) ... @@ -852,7 +884,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../pbdagcon_0.3+git20180411.c14c422+dfsg-9_source.changes +I: user script /srv/workspace/pbuilder/2819095/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for forky +I: user script /srv/workspace/pbuilder/2819095/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../pbdagcon_0.3+git20180411.c14c422+dfsg-9_source.changes dpkg-buildpackage: info: source package pbdagcon dpkg-buildpackage: info: source version 0.3+git20180411.c14c422+dfsg-9 dpkg-buildpackage: info: source distribution unstable @@ -939,105 +975,7 @@ g++ -o pbdagcon Alignment.o AlnGraphBoost.o BlasrM5AlnProvider.o main.o SimpleAligner.o -Wl,-z,relro -L /usr/lib/aarch64-linux-gnu/hdf5/serial -lrt -lblasr -lpbbam -lhdf5_cpp -lhdf5 -lhts -lz -lpthread make[2]: Leaving directory '/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/src/cpp' make[1]: Leaving directory '/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg' - dh_auto_test - make -j12 check -make[1]: Entering directory '/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg' -make -C src/cpp -make[2]: Entering directory '/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/src/cpp' -make[2]: Nothing to be done for 'all'. -make[2]: Leaving directory '/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/src/cpp' -make -C test/cpp -make[2]: Entering directory '/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/test/cpp' -g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -g -Wall -Wextra -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -I. -I./ -I.//../../src/cpp -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/daligner-include -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -I/usr/include/pbseq -I/usr/src/googletest/googletest/include -Ithird-party -isystem /usr/src/googletest/googletest/include -isystem /usr/src/googletest/googletest/src/.. -c -o gtest-all.o /usr/src/googletest/googletest/src/gtest-all.cc -g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -g -Wall -Wextra -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -I. -I./ -I.//../../src/cpp -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/daligner-include -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -I/usr/include/pbseq -I/usr/src/googletest/googletest/include -Ithird-party -isystem /usr/src/googletest/googletest/include -isystem /usr/src/googletest/googletest/src/.. -c -o gtest_main.o /usr/src/googletest/googletest/src/gtest_main.cc -g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I. -I./ -I.//../../src/cpp -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/daligner-include -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -I/usr/include/pbseq -I/usr/src/googletest/googletest/include -Ithird-party -c -o AlnGraphBoost.o .//../../src/cpp/AlnGraphBoost.cpp -g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I. -I./ -I.//../../src/cpp -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/daligner-include -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -I/usr/include/pbseq -I/usr/src/googletest/googletest/include -Ithird-party -c -o Alignment.o .//../../src/cpp/Alignment.cpp -g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I. -I./ -I.//../../src/cpp -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/daligner-include -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -I/usr/include/pbseq -I/usr/src/googletest/googletest/include -Ithird-party -c -o SimpleAligner.o .//../../src/cpp/SimpleAligner.cpp -g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I. -I./ -I.//../../src/cpp -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/daligner-include -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -I/usr/include/pbseq -I/usr/src/googletest/googletest/include -Ithird-party -c -o AlnGraphBoostTest.o AlnGraphBoostTest.cpp -mkdir xml -g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I. -I./ -I.//../../src/cpp -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/daligner-include -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -I/usr/include/pbseq -I/usr/src/googletest/googletest/include -Ithird-party -c -o AlignmentTest.o AlignmentTest.cpp -g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I. -I./ -I.//../../src/cpp -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/daligner-include -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -I/usr/include/pbseq -I/usr/src/googletest/googletest/include -Ithird-party -c -o SimpleAlignerTest.o SimpleAlignerTest.cpp -cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I. -I./ -I.//../../src/cpp -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/daligner-include -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -I/usr/include/pbseq -I/usr/src/googletest/googletest/include -Ithird-party -c -o DB.o /build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include/DB.c -cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I. -I./ -I.//../../src/cpp -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/daligner-include -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -I/usr/include/pbseq -I/usr/src/googletest/googletest/include -Ithird-party -c -o QV.o /build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include/QV.c -cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I. -I./ -I.//../../src/cpp -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/daligner-include -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -I/usr/include/pbseq -I/usr/src/googletest/googletest/include -Ithird-party -c -o align.o /build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/daligner-include/align.c -g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I. -I./ -I.//../../src/cpp -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/daligner-include -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -I/usr/include/pbseq -I/usr/src/googletest/googletest/include -Ithird-party -c -o DazAlnProvider.o .//../../src/cpp/DazAlnProvider.cpp -/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include/DB.c: In function 'Open_QVs': -/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include/DB.c:2415:16: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] - 2415 | (void) fscanf(istub,DB_NFILE,&nfiles); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include/DB.c:2419:20: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] - 2419 | { (void) fscanf(istub,DB_FDATA,&last,fname,prolog); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include/DB.c:2424:20: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] - 2424 | { (void) fscanf(istub,DB_FDATA,&last,fname,prolog); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I. -I./ -I.//../../src/cpp -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/dazzdb-include -I/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/debian/daligner-include -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -I/usr/include/pbseq -I/usr/src/googletest/googletest/include -Ithird-party -c -o TargetHitTest.o TargetHitTest.cpp -g++ -o test-alngraph gtest-all.o gtest_main.o AlnGraphBoost.o Alignment.o SimpleAligner.o AlnGraphBoostTest.o -Wl,-z,relro -L /usr/lib/aarch64-linux-gnu/hdf5/serial -lrt -lblasr -lpbbam -lhdf5_cpp -lhdf5 -lhts -lz -lpthread -g++ -o test-alignment gtest-all.o gtest_main.o AlnGraphBoost.o Alignment.o SimpleAligner.o AlignmentTest.o -Wl,-z,relro -L /usr/lib/aarch64-linux-gnu/hdf5/serial -lrt -lblasr -lpbbam -lhdf5_cpp -lhdf5 -lhts -lz -lpthread -g++ -o test-simple_aligner gtest-all.o gtest_main.o AlnGraphBoost.o Alignment.o SimpleAligner.o SimpleAlignerTest.o -Wl,-z,relro -L /usr/lib/aarch64-linux-gnu/hdf5/serial -lrt -lblasr -lpbbam -lhdf5_cpp -lhdf5 -lhts -lz -lpthread -g++ -o test-target_hit gtest-all.o gtest_main.o DB.o QV.o align.o Alignment.o DazAlnProvider.o TargetHitTest.o -Wl,-z,relro -L /usr/lib/aarch64-linux-gnu/hdf5/serial -lrt -lblasr -lpbbam -lhdf5_cpp -lhdf5 -lhts -lz -lpthread -LD_LIBRARY_PATH=::::/usr/lib/aarch64-linux-gnu/hdf5/serial::: PBDAGCON_TEST_DATA_DIR=./ ./test-alngraph --gtest_output=xml:xml/test-alngraph.xml -Running main() from /usr/src/googletest/googletest/src/gtest_main.cc -[==========] Running 2 tests from 1 test suite. -[----------] Global test environment set-up. -[----------] 2 tests from AlnGraphBoostTest -[ RUN ] AlnGraphBoostTest.RawConsensus -[ OK ] AlnGraphBoostTest.RawConsensus (0 ms) -[ RUN ] AlnGraphBoostTest.DanglingNodes -[ OK ] AlnGraphBoostTest.DanglingNodes (0 ms) -[----------] 2 tests from AlnGraphBoostTest (0 ms total) - -[----------] Global test environment tear-down -[==========] 2 tests from 1 test suite ran. (0 ms total) -[ PASSED ] 2 tests. -LD_LIBRARY_PATH=::::/usr/lib/aarch64-linux-gnu/hdf5/serial::: PBDAGCON_TEST_DATA_DIR=./ ./test-target_hit --gtest_output=xml:xml/test-target_hit.xml -Running main() from /usr/src/googletest/googletest/src/gtest_main.cc -[==========] Running 3 tests from 1 test suite. -[----------] Global test environment set-up. -[----------] 3 tests from TargetHitTest -[ RUN ] TargetHitTest.single_overlap_perfect -[ OK ] TargetHitTest.single_overlap_perfect (0 ms) -[ RUN ] TargetHitTest.single_overlap_inaccurate -[ OK ] TargetHitTest.single_overlap_inaccurate (0 ms) -[ RUN ] TargetHitTest.multi_overlap_inaccurate -[ OK ] TargetHitTest.multi_overlap_inaccurate (0 ms) -[----------] 3 tests from TargetHitTest (0 ms total) - -[----------] Global test environment tear-down -[==========] 3 tests from 1 test suite ran. (0 ms total) -[ PASSED ] 3 tests. -LD_LIBRARY_PATH=::::/usr/lib/aarch64-linux-gnu/hdf5/serial::: PBDAGCON_TEST_DATA_DIR=./ ./test-simple_aligner --gtest_output=xml:xml/test-simple_aligner.xml -Running main() from /usr/src/googletest/googletest/src/gtest_main.cc -[==========] Running 1 test from 1 test suite. -[----------] Global test environment set-up. -[----------] 1 test from SimpleAligner -[ RUN ] SimpleAligner.align -[ OK ] SimpleAligner.align (0 ms) -[----------] 1 test from SimpleAligner (0 ms total) - -[----------] Global test environment tear-down -[==========] 1 test from 1 test suite ran. (1 ms total) -[ PASSED ] 1 test. -LD_LIBRARY_PATH=::::/usr/lib/aarch64-linux-gnu/hdf5/serial::: PBDAGCON_TEST_DATA_DIR=./ ./test-alignment --gtest_output=xml:xml/test-alignment.xml -Running main() from /usr/src/googletest/googletest/src/gtest_main.cc -[==========] Running 4 tests from 1 test suite. -[----------] Global test environment set-up. -[----------] 4 tests from Alignment -[ RUN ] Alignment.Normalize -[ OK ] Alignment.Normalize (0 ms) -[ RUN ] Alignment.ParseBasic -[ OK ] Alignment.ParseBasic (0 ms) -[ RUN ] Alignment.ParseQuery -[ OK ] Alignment.ParseQuery (0 ms) -[ RUN ] Alignment.Trim -[ OK ] Alignment.Trim (0 ms) -[----------] 4 tests from Alignment (0 ms total) - -[----------] Global test environment tear-down -[==========] 4 tests from 1 test suite ran. (6 ms total) -[ PASSED ] 4 tests. -make[2]: Leaving directory '/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg/test/cpp' -make[1]: Leaving directory '/build/reproducible-path/pbdagcon-0.3+git20180411.c14c422+dfsg' +dh: command-omitted: The call to "dh_auto_test" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/pbdagcon/ @@ -1073,12 +1011,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/2819095/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/2819095/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/2777547 and its subdirectories -I: Current time: Thu Dec 3 15:04:11 -12 2026 -I: pbuilder-time-stamp: 1796353451 +I: removing directory /srv/workspace/pbuilder/2819095 and its subdirectories +I: Current time: Sat Nov 1 10:42:34 +14 2025 +I: pbuilder-time-stamp: 1761943354 Compressing the 2nd log... /var/lib/jenkins/userContent/reproducible/debian/logdiffs/forky/arm64/pbdagcon_0.3+git20180411.c14c422+dfsg-9.diff: 80.9% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/forky/arm64/pbdagcon_0.3+git20180411.c14c422+dfsg-9.diff.gz b2/build.log: 82.9% -- replaced with stdout Compressing the 1st log... b1/build.log: 85.4% -- replaced with stdout Fri Oct 31 20:42:36 UTC 2025 I: diffoscope 306 will be used to compare the two builds: ++ date -u +%s + DIFFOSCOPE_STAMP=/var/log/reproducible-builds/diffoscope_stamp_pbdagcon_forky_arm64_1761943356 + touch /var/log/reproducible-builds/diffoscope_stamp_pbdagcon_forky_arm64_1761943356 + RESULT=0 + systemd-run '--description=diffoscope on pbdagcon/0.3+git20180411.c14c422+dfsg-9 in forky/arm64' --slice=rb-build-diffoscope.slice -u rb-diffoscope-arm64_1-104142 '--property=SuccessExitStatus=1 124' --user --send-sighup --pipe --wait -E TMPDIR timeout 155m nice schroot --directory /srv/reproducible-results/rbuild-debian/r-b-build.zQTnpsm6 --run-session -c jenkins-reproducible-forky-diffoscope-b718802b-31f0-4474-8dae-8ec1b89ead5b -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian/r-b-build.zQTnpsm6/dbd-tmp-g5Xv6XZ ; timeout 150m diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.zQTnpsm6/pbdagcon_0.3+git20180411.c14c422+dfsg-9.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.zQTnpsm6/pbdagcon_0.3+git20180411.c14c422+dfsg-9.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.zQTnpsm6/pbdagcon_0.3+git20180411.c14c422+dfsg-9.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.zQTnpsm6/b1/pbdagcon_0.3+git20180411.c14c422+dfsg-9_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.zQTnpsm6/b2/pbdagcon_0.3+git20180411.c14c422+dfsg-9_arm64.changes' + false + set +x Running as unit: rb-diffoscope-arm64_1-104142.service; invocation ID: 1feec4a098ae40c7a9e27b2d572b357d # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.zQTnpsm6/pbdagcon_0.3+git20180411.c14c422+dfsg-9.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.zQTnpsm6/pbdagcon_0.3+git20180411.c14c422+dfsg-9.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.zQTnpsm6/pbdagcon_0.3+git20180411.c14c422+dfsg-9.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.zQTnpsm6/b1/pbdagcon_0.3+git20180411.c14c422+dfsg-9_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.zQTnpsm6/b2/pbdagcon_0.3+git20180411.c14c422+dfsg-9_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited, status=0/SUCCESS Service runtime: 231ms CPU time consumed: 180ms Memory peak: 17.8M (swap: 0B) _ _ _ __ | |__ __| | __ _ __ _ ___ ___ _ __ | '_ \| '_ \ / _` |/ _` |/ _` |/ __/ _ \| '_ \ | |_) | |_) | (_| | (_| | (_| | (_| (_) | | | | | .__/|_.__/ \__,_|\__,_|\__, |\___\___/|_| |_| |_| |___/ Fri Oct 31 20:42:36 UTC 2025 I: diffoscope 306 found no differences in the changes files, and a .buildinfo file also exists. Fri Oct 31 20:42:36 UTC 2025 I: pbdagcon from forky built successfully and reproducibly on arm64. INSERT 0 1 INSERT 0 1 DELETE 1 [2025-10-31 20:42:37] INFO: Starting at 2025-10-31 20:42:37.334350 [2025-10-31 20:42:37] INFO: Generating the pages of 1 package(s) [2025-10-31 20:42:37] CRITICAL: https://tests.reproducible-builds.org/debian/forky/arm64/pbdagcon didn't produce a buildlog, even though it has been built. [2025-10-31 20:42:37] INFO: Finished at 2025-10-31 20:42:37.859819, took: 0:00:00.525474 Fri Oct 31 20:42:37 UTC 2025 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/forky/arm64/pbdagcon.html Fri Oct 31 20:42:37 UTC 2025 I: Removing signed pbdagcon_0.3+git20180411.c14c422+dfsg-9_arm64.buildinfo.asc files: removed './b1/pbdagcon_0.3+git20180411.c14c422+dfsg-9_arm64.buildinfo.asc' removed './b2/pbdagcon_0.3+git20180411.c14c422+dfsg-9_arm64.buildinfo.asc' 1761943357 arm64 forky pbdagcon Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/forky/arm64/pbdagcon_0.3+git20180411.c14c422+dfsg-9.rbuild.log: 83.2% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/forky/arm64/pbdagcon_0.3+git20180411.c14c422+dfsg-9.rbuild.log.gz [2025-10-31 20:42:38] INFO: Starting at 2025-10-31 20:42:38.223700 [2025-10-31 20:42:38] INFO: Generating the pages of 1 package(s) [2025-10-31 20:42:38] INFO: Finished at 2025-10-31 20:42:38.654632, took: 0:00:00.430936 All cleanup done. Fri Oct 31 20:42:38 UTC 2025 - total duration: 0h 3m 21s. Fri Oct 31 20:42:38 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-FlqEvI1w, removing. Finished with result: success Main processes terminated with: code=exited, status=0/SUCCESS Service runtime: 3min 23.559s CPU time consumed: 3.810s Memory peak: 69.7M (swap: 0B)