Running as unit: rb-build-arm64_10-102508.service; invocation ID: 65b3bfd63c274ddd87dc8b60504ddd24 ==================================================================================== Thu Oct 30 20:25:27 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_arm64_10) on jenkins, called using "codethink04-arm64 codethink03-arm64" as arguments. Thu Oct 30 20:25:27 UTC 2025 - actually running "reproducible_build.sh" (md5sum cc591790ab2c8e13f5e554202b95c89c) as "/tmp/jenkins-script-nhfep2tj" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Thu Oct 30 20:25:27 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink04-arm64.debian.net is marked as down. Thu Oct 30 20:25:27 UTC 2025 - checking via ssh if codethink04-arm64.debian.net is up. removed '/tmp/read-only-fs-test-wKvw93' Thu Oct 30 20:25:28 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink03-arm64.debian.net is marked as down. Thu Oct 30 20:25:28 UTC 2025 - checking via ssh if codethink03-arm64.debian.net is up. removed '/tmp/read-only-fs-test-ojX28W' ok, let's check if r-bioc-basilisk is building anywhere yet… ok, r-bioc-basilisk is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of r-bioc-basilisk in experimental on arm64 on jenkins now. 1st build will be done on codethink04-arm64.debian.net. 2nd build will be done on codethink03-arm64.debian.net. ============================================================================= Thu Oct 30 20:25:40 UTC 2025 I: starting to build r-bioc-basilisk/experimental/arm64 on jenkins on '2025-10-30 20:25' Thu Oct 30 20:25:40 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_10/102508/console.log 1761855940 arm64 experimental r-bioc-basilisk Thu Oct 30 20:25:40 UTC 2025 I: Downloading source for experimental/r-bioc-basilisk=1.18.0+ds-1 --2025-10-30 20:25:40-- http://cdn-fastly.deb.debian.org/debian/pool/main/r/r-bioc-basilisk/r-bioc-basilisk_1.18.0%2bds-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2206 (2.2K) [text/prs.lines.tag] Saving to: ‘r-bioc-basilisk_1.18.0+ds-1.dsc’ 0K .. 100% 236M=0s 2025-10-30 20:25:40 (236 MB/s) - ‘r-bioc-basilisk_1.18.0+ds-1.dsc’ saved [2206/2206] --2025-10-30 20:25:40-- http://cdn-fastly.deb.debian.org/debian/pool/main/r/r-bioc-basilisk/r-bioc-basilisk_1.18.0%2bds-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2206 (2.2K) [text/prs.lines.tag] Saving to: ‘r-bioc-basilisk_1.18.0+ds-1.dsc’ 0K .. 100% 236M=0s 2025-10-30 20:25:40 (236 MB/s) - ‘r-bioc-basilisk_1.18.0+ds-1.dsc’ saved [2206/2206] Thu Oct 30 20:25:40 UTC 2025 I: r-bioc-basilisk_1.18.0+ds-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: r-bioc-basilisk Binary: r-bioc-basilisk Architecture: amd64 arm64 Version: 1.18.0+ds-1 Maintainer: Debian R Packages Maintainers Uploaders: Steffen Moeller Homepage: https://bioconductor.org/packages/basilisk/ Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/r-pkg-team/r-bioc-basilisk Vcs-Git: https://salsa.debian.org/r-pkg-team/r-bioc-basilisk.git Testsuite: autopkgtest-pkg-r Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-cran-reticulate, r-bioc-dir.expiry, r-bioc-basilisk.utils (>= 1.15.1), architecture-is-64-bit Package-List: r-bioc-basilisk deb gnu-r optional arch=amd64,arm64 Checksums-Sha1: 8687bc69e098b9a6f293e49886b40fcd753ad35c 29756 r-bioc-basilisk_1.18.0+ds.orig.tar.xz 31d241b027b0608ee0d2d0d1dbecbd6fda22ca69 3648 r-bioc-basilisk_1.18.0+ds-1.debian.tar.xz Checksums-Sha256: fc392cd020e9a32f71a0aab9f586075e00cfc37ce9961af77f3563c169d03a49 29756 r-bioc-basilisk_1.18.0+ds.orig.tar.xz 1dab97a16c2f3b78822d229cba7b54f8ec8db85720a5dfc4780163af736c507a 3648 r-bioc-basilisk_1.18.0+ds-1.debian.tar.xz Files: e0289c717db5216368adf520cb1d0766 29756 r-bioc-basilisk_1.18.0+ds.orig.tar.xz f3170a861e81d7ad77508977c6a344da 3648 r-bioc-basilisk_1.18.0+ds-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJGBAEBCgAwFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAmdFxvISHGNydXNvZUBk ZWJpYW4ub3JnAAoJEDwmdj9sZ+biK8YQAJiNY7422+giKLN0p/1wdHbY8nFbC0a5 3p6ErppEirEfGPa3XcrrzHNB88v0xFA/xLamz7FD9jgF+tT7fdrbgmCXKL6nqAno EqS/URvAlgQBSwp7bufZRGFtMLTh29m66sNFZoBmp7Y0mfvEGS6na/Dg+PwKeqfT ZvnrxsQgD13vNcIRF3tr81psPUrcm7VsppBLgmLmty+udJ9rFnGd8tX14KmTqiw5 pISllj4obpdimslBrdI8z3ue7TsetT/z3JJKbHEKwGKl5E2uAO7ZBbla3/CkVfXi 2ou7i10MPQW8If/VRYbk2JvdSPbKMVLm1RRgPyX81KZysn00nkX4oFVlo34I+4BO 1D4XAoAtIHFzvesBXgztEiF8/IbI3y1RuWO7AELyZ0ZtpPNUpxicAivjlrx39o6G FBYV/yJ3xypuuI1oS+JFnOqzNDsV4r7wtyIKeqn4URkCJXzHG4pA9uimcohW6syq 3hIE1589hcFS6QdmNy/xzMMswziCdnolN4BS2dywFY3RYtqZdrz8KbGtSavz3kYg RD+yu3KMcjH73gukpc9ef/TJ5zqy34HWDKAm64XcrkL1HlbiOqHiHHxeO+enUN+b UBwCsLA8tjgDZNoMlCFseZy3sRE6XqSxqM0SA1pGpRjRZpHBeywVNdiyA7i/8ApY 3JrmYo2Dpyp7 =Fn+7 -----END PGP SIGNATURE----- Thu Oct 30 20:25:40 UTC 2025 I: Checking whether the package is not for us Thu Oct 30 20:25:40 UTC 2025 I: Starting 1st build on remote node codethink04-arm64.debian.net. Thu Oct 30 20:25:40 UTC 2025 I: Preparing to do remote build '1' on codethink04-arm64.debian.net. Thu Oct 30 20:25:40 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink04-arm64.debian.net is marked as down. Thu Oct 30 20:25:40 UTC 2025 - checking via ssh if codethink04-arm64.debian.net is up. removed '/tmp/read-only-fs-test-yRsboT' ==================================================================================== Thu Oct 30 20:25:41 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on codethink04-arm64, called using "1 r-bioc-basilisk experimental /srv/reproducible-results/rbuild-debian/r-b-build.RRJcXJQJ 1.18.0+ds-1" as arguments. Thu Oct 30 20:25:41 UTC 2025 - actually running "reproducible_build.sh" (md5sum cc591790ab2c8e13f5e554202b95c89c) as "/tmp/jenkins-script-lJbGURAI" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Thu Oct 30 20:25:41 UTC 2025 I: Downloading source for experimental/r-bioc-basilisk=1.18.0+ds-1 Reading package lists... NOTICE: 'r-bioc-basilisk' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/r-pkg-team/r-bioc-basilisk.git Please use: git clone https://salsa.debian.org/r-pkg-team/r-bioc-basilisk.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 35.6 kB of source archives. Get:1 http://deb.debian.org/debian experimental/main r-bioc-basilisk 1.18.0+ds-1 (dsc) [2206 B] Get:2 http://deb.debian.org/debian experimental/main r-bioc-basilisk 1.18.0+ds-1 (tar) [29.8 kB] Get:3 http://deb.debian.org/debian experimental/main r-bioc-basilisk 1.18.0+ds-1 (diff) [3648 B] Fetched 35.6 kB in 0s (584 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'r-bioc-basilisk' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/r-pkg-team/r-bioc-basilisk.git Please use: git clone https://salsa.debian.org/r-pkg-team/r-bioc-basilisk.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 35.6 kB of source archives. Get:1 http://deb.debian.org/debian experimental/main r-bioc-basilisk 1.18.0+ds-1 (dsc) [2206 B] Get:2 http://deb.debian.org/debian experimental/main r-bioc-basilisk 1.18.0+ds-1 (tar) [29.8 kB] Get:3 http://deb.debian.org/debian experimental/main r-bioc-basilisk 1.18.0+ds-1 (diff) [3648 B] Fetched 35.6 kB in 0s (584 kB/s) Download complete and in download only mode ============================================================================= Building r-bioc-basilisk in experimental on arm64 on codethink04-arm64 now. Date: Thu Oct 30 20:25:42 GMT 2025 Date UTC: Thu Oct 30 20:25:42 UTC 2025 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Thu Oct 30 08:25:42 -12 2025 I: pbuilder-time-stamp: 1761855942 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/experimental-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [r-bioc-basilisk_1.18.0+ds-1.dsc] I: copying [./r-bioc-basilisk_1.18.0+ds.orig.tar.xz] I: copying [./r-bioc-basilisk_1.18.0+ds-1.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./r-bioc-basilisk_1.18.0+ds-1.dsc: no acceptable signature found dpkg-source: info: extracting r-bioc-basilisk in r-bioc-basilisk-1.18.0+ds dpkg-source: info: unpacking r-bioc-basilisk_1.18.0+ds.orig.tar.xz dpkg-source: info: unpacking r-bioc-basilisk_1.18.0+ds-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying skip_failing_test.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3317326/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='experimental' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='9e48869fc3d448cf94f325040a0fe04f' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3317326' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.RRJcXJQJ/pbuilderrc_wVeR --distribution experimental --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/experimental-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.RRJcXJQJ/b1 --logfile b1/build.log r-bioc-basilisk_1.18.0+ds-1.dsc' SUDO_GID='109' SUDO_HOME='/var/lib/jenkins' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink04-arm64 6.12.48+deb13-cloud-arm64 #1 SMP Debian 6.12.48-1 (2025-09-20) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3317326/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-cran-reticulate, r-bioc-dir.expiry, r-bioc-basilisk.utils (>= 1.15.1), architecture-is-64-bit dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19964 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-r; however: Package dh-r is not installed. pbuilder-satisfydepends-dummy depends on r-base-dev; however: Package r-base-dev is not installed. pbuilder-satisfydepends-dummy depends on r-cran-reticulate; however: Package r-cran-reticulate is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-dir.expiry; however: Package r-bioc-dir.expiry is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-basilisk.utils (>= 1.15.1); however: Package r-bioc-basilisk.utils is not installed. pbuilder-satisfydepends-dummy depends on architecture-is-64-bit; however: Package architecture-is-64-bit is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: architecture-properties{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} dctrl-tools{a} debhelper{a} dh-autoreconf{a} dh-r{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} gettext{a} gettext-base{a} gfortran{a} gfortran-15{a} gfortran-15-aarch64-linux-gnu{a} gfortran-aarch64-linux-gnu{a} groff-base{a} icu-devtools{a} intltool-debian{a} libalgorithm-c3-perl{a} libarchive-zip-perl{a} libb-hooks-endofscope-perl{a} libb-hooks-op-check-perl{a} libblas-dev{a} libblas3{a} libbrotli1{a} libbz2-dev{a} libcairo2{a} libclass-c3-perl{a} libclass-load-perl{a} libclass-load-xs-perl{a} libclone-perl{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4t64{a} libdata-optlist-perl{a} libdatrie1{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libdevel-callchecker-perl{a} libdevel-globaldestruction-perl{a} libdevel-overloadinfo-perl{a} libdevel-stacktrace-perl{a} libdist-checkconflicts-perl{a} libdynaloader-functions-perl{a} libelf1t64{a} libencode-locale-perl{a} libeval-closure-perl{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran-15-dev{a} libgfortran5{a} libglib2.0-0t64{a} libgnutls30t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhttp-date-perl{a} libhttp-message-perl{a} libice6{a} libicu-dev{a} libicu76{a} libidn2-0{a} libio-html-perl{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} libldap2{a} liblerc4{a} liblwp-mediatypes-perl{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libmodule-implementation-perl{a} libmodule-runtime-conflicts-perl{a} libmodule-runtime-perl{a} libmoose-perl{a} libmro-compat-perl{a} libnamespace-clean-perl{a} libncurses-dev{a} libncurses6{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libngtcp2-crypto-ossl0{a} libp11-kit0{a} libpackage-deprecationmanager-perl{a} libpackage-stash-perl{a} libpackage-stash-xs-perl{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper2{a} libparams-classify-perl{a} libparams-util-perl{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpipeline1{a} libpixman-1-0{a} libpkgconf3{a} libpng-dev{a} libpng16-16t64{a} libproc2-0{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline-dev{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libsm6{a} libssh2-1t64{a} libsub-exporter-perl{a} libsub-exporter-progressive-perl{a} libsub-identify-perl{a} libsub-install-perl{a} libsub-name-perl{a} libswitch-perl{a} libtasn1-6{a} libtcl8.6{a} libtext-charwidth-perl{a} libtext-wrapi18n-perl{a} libthai-data{a} libthai0{a} libtiff6{a} libtimedate-perl{a} libtirpc-common{a} libtirpc-dev{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} libunistring5{a} liburi-perl{a} libvariable-magic-perl{a} libwebp7{a} libwww-curl-perl{a} libwww-curl-simple-perl{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2-16{a} libxmuu1{a} libxrender1{a} libxss1{a} libxt6t64{a} libzstd-dev{a} littler{a} m4{a} man-db{a} media-types{a} netbase{a} openssl{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} python3{a} python3-minimal{a} python3.13{a} python3.13-minimal{a} r-base-core{a} r-base-dev{a} r-bioc-basilisk.utils{a} r-bioc-biocgenerics{a} r-bioc-dir.expiry{a} r-cran-filelock{a} r-cran-here{a} r-cran-jsonlite{a} r-cran-lattice{a} r-cran-littler{a} r-cran-matrix{a} r-cran-pkgkitten{a} r-cran-png{a} r-cran-rappdirs{a} r-cran-rcpp{a} r-cran-rcpptoml{a} r-cran-reticulate{a} r-cran-rlang{a} r-cran-rprojroot{a} r-cran-withr{a} readline-common{a} sensible-utils{a} tzdata{a} ucf{a} unzip{a} x11-common{a} xauth{a} xdg-utils{a} zip{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc cme curl devscripts git-buildpackage krb5-locales libarchive-cpio-perl libclass-c3-xs-perl libdevel-lexalias-perl libdevel-partialdump-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libio-compress-brotli-perl libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools libsasl2-modules libx11-protocol-perl linux-sysctl-defaults lynx psmisc publicsuffix r-cran-callr r-cran-cli r-cran-covr r-cran-crayon r-cran-dbi r-cran-fs r-cran-glue r-cran-httr r-cran-knitr r-cran-lifecycle r-cran-magrittr r-cran-pillar r-cran-r.rsp r-cran-rmarkdown r-cran-rsqlite r-cran-sf r-cran-testthat r-cran-tibble r-cran-tinytest r-cran-usethis r-cran-vctrs r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 226 newly installed, 0 to remove and 0 not upgraded. Need to get 122 MB of archives. After unpacking 388 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main arm64 libexpat1 arm64 2.7.3-1 [96.5 kB] Get: 2 http://deb.debian.org/debian unstable/main arm64 libpython3.13-minimal arm64 3.13.9-1 [858 kB] Get: 3 http://deb.debian.org/debian unstable/main arm64 python3.13-minimal arm64 3.13.9-1 [2061 kB] Get: 4 http://deb.debian.org/debian unstable/main arm64 python3-minimal arm64 3.13.7-1 [27.2 kB] Get: 5 http://deb.debian.org/debian unstable/main arm64 media-types all 14.0.0 [30.8 kB] Get: 6 http://deb.debian.org/debian unstable/main arm64 netbase all 6.5 [12.4 kB] Get: 7 http://deb.debian.org/debian unstable/main arm64 tzdata all 2025b-5 [260 kB] Get: 8 http://deb.debian.org/debian unstable/main arm64 libffi8 arm64 3.5.2-2 [21.5 kB] Get: 9 http://deb.debian.org/debian unstable/main arm64 readline-common all 8.3-3 [74.8 kB] Get: 10 http://deb.debian.org/debian unstable/main arm64 libreadline8t64 arm64 8.3-3 [169 kB] Get: 11 http://deb.debian.org/debian unstable/main arm64 libpython3.13-stdlib arm64 3.13.9-1 [1900 kB] Get: 12 http://deb.debian.org/debian unstable/main arm64 python3.13 arm64 3.13.9-1 [764 kB] Get: 13 http://deb.debian.org/debian unstable/main arm64 libpython3-stdlib arm64 3.13.7-1 [10.2 kB] Get: 14 http://deb.debian.org/debian unstable/main arm64 python3 arm64 3.13.7-1 [28.3 kB] Get: 15 http://deb.debian.org/debian unstable/main arm64 libproc2-0 arm64 2:4.0.4-9 [62.8 kB] Get: 16 http://deb.debian.org/debian unstable/main arm64 procps arm64 2:4.0.4-9 [871 kB] Get: 17 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.26 [27.0 kB] Get: 18 http://deb.debian.org/debian unstable/main arm64 openssl arm64 3.5.4-1 [1457 kB] Get: 19 http://deb.debian.org/debian unstable/main arm64 ca-certificates all 20250419 [162 kB] Get: 20 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.46-5 [338 kB] Get: 21 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.46-5 [103 kB] Get: 22 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.46-5 [43.7 kB] Get: 23 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.23.1-2+b1 [241 kB] Get: 24 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-2 [69.0 kB] Get: 25 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-9 [1130 kB] Get: 26 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.41.2-4 [97.3 kB] Get: 27 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 28 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.1-1 [1453 kB] Get: 29 http://deb.debian.org/debian unstable/main arm64 libtext-charwidth-perl arm64 0.04-11+b4 [9652 B] Get: 30 http://deb.debian.org/debian unstable/main arm64 libtext-wrapi18n-perl all 0.06-10 [8808 B] Get: 31 http://deb.debian.org/debian unstable/main arm64 ucf all 3.0052 [43.3 kB] Get: 32 http://deb.debian.org/debian unstable/main arm64 architecture-properties arm64 0.2.6 [2336 B] Get: 33 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.20-2 [315 kB] Get: 34 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3.1 [494 kB] Get: 35 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20240727.1 [60.2 kB] Get: 36 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.18.1-2 [877 kB] Get: 37 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.23.1-2 [770 kB] Get: 38 http://deb.debian.org/debian unstable/main arm64 dctrl-tools arm64 2.24-3+b1 [125 kB] Get: 39 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.28 [92.4 kB] Get: 40 http://deb.debian.org/debian unstable/main arm64 libtool all 2.5.4-7 [540 kB] Get: 41 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 21 [12.2 kB] Get: 42 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 43 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 44 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 45 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.194-1 [184 kB] Get: 46 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.16-2 [100 kB] Get: 47 http://deb.debian.org/debian unstable/main arm64 libunistring5 arm64 1.3-2 [453 kB] Get: 48 http://deb.debian.org/debian unstable/main arm64 libxml2-16 arm64 2.15.1+dfsg-0.3 [591 kB] Get: 49 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.23.1-2+b1 [1612 kB] Get: 50 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 51 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 52 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.28 [941 kB] Get: 53 http://deb.debian.org/debian unstable/main arm64 zip arm64 3.0-15 [227 kB] Get: 54 http://deb.debian.org/debian unstable/main arm64 unzip arm64 6.0-29 [163 kB] Get: 55 http://deb.debian.org/debian unstable/main arm64 libpaper2 arm64 2.2.5-0.3+b2 [16.6 kB] Get: 56 http://deb.debian.org/debian unstable/main arm64 libpaper-utils arm64 2.2.5-0.3+b2 [16.4 kB] Get: 57 http://deb.debian.org/debian unstable/main arm64 xdg-utils all 1.2.1-2 [75.8 kB] Get: 58 http://deb.debian.org/debian unstable/main arm64 libblas3 arm64 3.12.1-7 [135 kB] Get: 59 http://deb.debian.org/debian unstable/main arm64 libbrotli1 arm64 1.1.0-2+b7 [308 kB] Get: 60 http://deb.debian.org/debian unstable/main arm64 libpng16-16t64 arm64 1.6.50-1 [275 kB] Get: 61 http://deb.debian.org/debian unstable/main arm64 libfreetype6 arm64 2.13.3+dfsg-1 [422 kB] Get: 62 http://deb.debian.org/debian unstable/main arm64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 63 http://deb.debian.org/debian unstable/main arm64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 64 http://deb.debian.org/debian unstable/main arm64 fontconfig-config arm64 2.15.0-2.4 [318 kB] Get: 65 http://deb.debian.org/debian unstable/main arm64 libfontconfig1 arm64 2.15.0-2.4 [387 kB] Get: 66 http://deb.debian.org/debian unstable/main arm64 libpixman-1-0 arm64 0.46.4-1 [174 kB] Get: 67 http://deb.debian.org/debian unstable/main arm64 libxau6 arm64 1:1.0.11-1 [20.6 kB] Get: 68 http://deb.debian.org/debian unstable/main arm64 libxdmcp6 arm64 1:1.1.5-1 [27.8 kB] Get: 69 http://deb.debian.org/debian unstable/main arm64 libxcb1 arm64 1.17.0-2+b1 [143 kB] Get: 70 http://deb.debian.org/debian unstable/main arm64 libx11-data all 2:1.8.12-1 [343 kB] Get: 71 http://deb.debian.org/debian unstable/main arm64 libx11-6 arm64 2:1.8.12-1 [795 kB] Get: 72 http://deb.debian.org/debian unstable/main arm64 libxcb-render0 arm64 1.17.0-2+b1 [115 kB] Get: 73 http://deb.debian.org/debian unstable/main arm64 libxcb-shm0 arm64 1.17.0-2+b1 [105 kB] Get: 74 http://deb.debian.org/debian unstable/main arm64 libxext6 arm64 2:1.3.4-1+b3 [49.2 kB] Get: 75 http://deb.debian.org/debian unstable/main arm64 libxrender1 arm64 1:0.9.12-1 [27.0 kB] Get: 76 http://deb.debian.org/debian unstable/main arm64 libcairo2 arm64 1.18.4-1+b1 [483 kB] Get: 77 http://deb.debian.org/debian unstable/main arm64 libnghttp3-9 arm64 1.12.0-1 [63.6 kB] Get: 78 http://deb.debian.org/debian unstable/main arm64 libngtcp2-16 arm64 1.16.0-1 [123 kB] Get: 79 http://deb.debian.org/debian unstable/main arm64 libkrb5support0 arm64 1.21.3-5 [32.4 kB] Get: 80 http://deb.debian.org/debian unstable/main arm64 libcom-err2 arm64 1.47.2-3+b3 [24.9 kB] Get: 81 http://deb.debian.org/debian unstable/main arm64 libk5crypto3 arm64 1.21.3-5 [81.2 kB] Get: 82 http://deb.debian.org/debian unstable/main arm64 libkeyutils1 arm64 1.6.3-6 [9716 B] Get: 83 http://deb.debian.org/debian unstable/main arm64 libkrb5-3 arm64 1.21.3-5 [308 kB] Get: 84 http://deb.debian.org/debian unstable/main arm64 libgssapi-krb5-2 arm64 1.21.3-5 [127 kB] Get: 85 http://deb.debian.org/debian unstable/main arm64 libidn2-0 arm64 2.3.8-4 [108 kB] Get: 86 http://deb.debian.org/debian unstable/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-10 [19.8 kB] Get: 87 http://deb.debian.org/debian unstable/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-10 [55.0 kB] Get: 88 http://deb.debian.org/debian unstable/main arm64 libldap2 arm64 2.6.10+dfsg-1 [179 kB] Get: 89 http://deb.debian.org/debian unstable/main arm64 libnghttp2-14 arm64 1.64.0-1.1+b1 [71.7 kB] Get: 90 http://deb.debian.org/debian unstable/main arm64 libngtcp2-crypto-ossl0 arm64 1.16.0-1 [25.7 kB] Get: 91 http://deb.debian.org/debian unstable/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB] Get: 92 http://deb.debian.org/debian unstable/main arm64 libp11-kit0 arm64 0.25.9-2 [420 kB] Get: 93 http://deb.debian.org/debian unstable/main arm64 libtasn1-6 arm64 4.20.0-2 [47.3 kB] Get: 94 http://deb.debian.org/debian unstable/main arm64 libgnutls30t64 arm64 3.8.10-3 [1384 kB] Get: 95 http://deb.debian.org/debian unstable/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-3 [56.3 kB] Get: 96 http://deb.debian.org/debian unstable/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Get: 97 http://deb.debian.org/debian unstable/main arm64 libcurl4t64 arm64 8.17.0~rc3-1 [370 kB] Get: 98 http://deb.debian.org/debian unstable/main arm64 libdeflate0 arm64 1.23-2 [42.4 kB] Get: 99 http://deb.debian.org/debian unstable/main arm64 libglib2.0-0t64 arm64 2.86.1-1 [1436 kB] Get: 100 http://deb.debian.org/debian unstable/main arm64 libicu76 arm64 76.1-4 [9524 kB] Get: 101 http://deb.debian.org/debian unstable/main arm64 libjpeg62-turbo arm64 1:2.1.5-4 [173 kB] Get: 102 http://deb.debian.org/debian unstable/main arm64 libgfortran5 arm64 15.2.0-7 [371 kB] Get: 103 http://deb.debian.org/debian unstable/main arm64 liblapack3 arm64 3.12.1-7 [1846 kB] Get: 104 http://deb.debian.org/debian unstable/main arm64 fontconfig arm64 2.15.0-2.4 [463 kB] Get: 105 http://deb.debian.org/debian unstable/main arm64 libfribidi0 arm64 1.0.16-3 [26.5 kB] Get: 106 http://deb.debian.org/debian unstable/main arm64 libgraphite2-3 arm64 1.3.14-11 [70.8 kB] Get: 107 http://deb.debian.org/debian unstable/main arm64 libharfbuzz0b arm64 12.1.0-1 [486 kB] Get: 108 http://deb.debian.org/debian unstable/main arm64 libthai-data all 0.1.29-2 [168 kB] Get: 109 http://deb.debian.org/debian unstable/main arm64 libdatrie1 arm64 0.2.13-4 [37.4 kB] Get: 110 http://deb.debian.org/debian unstable/main arm64 libthai0 arm64 0.1.29-2+b1 [48.4 kB] Get: 111 http://deb.debian.org/debian unstable/main arm64 libpango-1.0-0 arm64 1.56.3-2 [222 kB] Get: 112 http://deb.debian.org/debian unstable/main arm64 libpangoft2-1.0-0 arm64 1.56.3-2 [56.5 kB] Get: 113 http://deb.debian.org/debian unstable/main arm64 libpangocairo-1.0-0 arm64 1.56.3-2 [35.3 kB] Get: 114 http://deb.debian.org/debian unstable/main arm64 libtcl8.6 arm64 8.6.17+dfsg-1 [982 kB] Get: 115 http://deb.debian.org/debian unstable/main arm64 libjbig0 arm64 2.1-6.1+b2 [30.4 kB] Get: 116 http://deb.debian.org/debian unstable/main arm64 liblerc4 arm64 4.0.0+ds-5 [146 kB] Get: 117 http://deb.debian.org/debian unstable/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [114 kB] Get: 118 http://deb.debian.org/debian unstable/main arm64 libwebp7 arm64 1.5.0-0.1 [271 kB] Get: 119 http://deb.debian.org/debian unstable/main arm64 libtiff6 arm64 4.7.1-1 [334 kB] Get: 120 http://deb.debian.org/debian unstable/main arm64 libtirpc-common all 1.3.6+ds-1 [11.0 kB] Get: 121 http://deb.debian.org/debian unstable/main arm64 libtirpc3t64 arm64 1.3.6+ds-1 [79.1 kB] Get: 122 http://deb.debian.org/debian unstable/main arm64 libxft2 arm64 2.3.6-1+b4 [51.6 kB] Get: 123 http://deb.debian.org/debian unstable/main arm64 x11-common all 1:7.7+26 [217 kB] Get: 124 http://deb.debian.org/debian unstable/main arm64 libxss1 arm64 1:1.2.3-1+b3 [17.1 kB] Get: 125 http://deb.debian.org/debian unstable/main arm64 libtk8.6 arm64 8.6.17-1 [740 kB] Get: 126 http://deb.debian.org/debian unstable/main arm64 libice6 arm64 2:1.1.1-1 [62.1 kB] Get: 127 http://deb.debian.org/debian unstable/main arm64 libsm6 arm64 2:1.2.6-1 [36.4 kB] Get: 128 http://deb.debian.org/debian unstable/main arm64 libxt6t64 arm64 1:1.2.1-1.3 [182 kB] Get: 129 http://deb.debian.org/debian unstable/main arm64 r-base-core arm64 4.5.1-1 [28.4 MB] Get: 130 http://deb.debian.org/debian unstable/main arm64 libgfortran-15-dev arm64 15.2.0-7 [411 kB] Get: 131 http://deb.debian.org/debian unstable/main arm64 gfortran-15-aarch64-linux-gnu arm64 15.2.0-7 [10.8 MB] Get: 132 http://deb.debian.org/debian unstable/main arm64 gfortran-15 arm64 15.2.0-7 [18.0 kB] Get: 133 http://deb.debian.org/debian unstable/main arm64 gfortran-aarch64-linux-gnu arm64 4:15.2.0-4 [1280 B] Get: 134 http://deb.debian.org/debian unstable/main arm64 gfortran arm64 4:15.2.0-4 [1428 B] Get: 135 http://deb.debian.org/debian unstable/main arm64 libblas-dev arm64 3.12.1-7 [145 kB] Get: 136 http://deb.debian.org/debian unstable/main arm64 liblapack-dev arm64 3.12.1-7 [3829 kB] Get: 137 http://deb.debian.org/debian unstable/main arm64 libncurses6 arm64 6.5+20250216-2 [96.1 kB] Get: 138 http://deb.debian.org/debian unstable/main arm64 libncurses-dev arm64 6.5+20250216-2 [340 kB] Get: 139 http://deb.debian.org/debian unstable/main arm64 libreadline-dev arm64 8.3-3 [163 kB] Get: 140 http://deb.debian.org/debian unstable/main arm64 libjpeg62-turbo-dev arm64 1:2.1.5-4 [293 kB] Get: 141 http://deb.debian.org/debian unstable/main arm64 libjpeg-dev arm64 1:2.1.5-4 [72.2 kB] Get: 142 http://deb.debian.org/debian unstable/main arm64 libpcre2-16-0 arm64 10.46-1 [247 kB] Get: 143 http://deb.debian.org/debian unstable/main arm64 libpcre2-32-0 arm64 10.46-1 [238 kB] Get: 144 http://deb.debian.org/debian unstable/main arm64 libpcre2-posix3 arm64 10.46-1 [64.1 kB] Get: 145 http://deb.debian.org/debian unstable/main arm64 libpcre2-dev arm64 10.46-1 [750 kB] Get: 146 http://deb.debian.org/debian unstable/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Get: 147 http://deb.debian.org/debian unstable/main arm64 libpng-dev arm64 1.6.50-1 [361 kB] Get: 148 http://deb.debian.org/debian unstable/main arm64 libbz2-dev arm64 1.0.8-6 [31.9 kB] Get: 149 http://deb.debian.org/debian unstable/main arm64 liblzma-dev arm64 5.8.1-2 [344 kB] Get: 150 http://deb.debian.org/debian unstable/main arm64 icu-devtools arm64 76.1-4 [200 kB] Get: 151 http://deb.debian.org/debian unstable/main arm64 libicu-dev arm64 76.1-4 [10.6 MB] Get: 152 http://deb.debian.org/debian unstable/main arm64 libxmuu1 arm64 2:1.1.3-3+b4 [22.0 kB] Get: 153 http://deb.debian.org/debian unstable/main arm64 xauth arm64 1:1.1.2-1.1 [35.4 kB] Get: 154 http://deb.debian.org/debian unstable/main arm64 libpkgconf3 arm64 1.8.1-4 [35.3 kB] Get: 155 http://deb.debian.org/debian unstable/main arm64 pkgconf-bin arm64 1.8.1-4 [29.6 kB] Get: 156 http://deb.debian.org/debian unstable/main arm64 pkgconf arm64 1.8.1-4 [26.1 kB] Get: 157 http://deb.debian.org/debian unstable/main arm64 libtirpc-dev arm64 1.3.6+ds-1 [192 kB] Get: 158 http://deb.debian.org/debian unstable/main arm64 libdeflate-dev arm64 1.23-2 [51.3 kB] Get: 159 http://deb.debian.org/debian unstable/main arm64 libzstd-dev arm64 1.5.7+dfsg-2 [330 kB] Get: 160 http://deb.debian.org/debian unstable/main arm64 r-base-dev all 4.5.1-1 [4360 B] Get: 161 http://deb.debian.org/debian unstable/main arm64 libfile-which-perl all 1.27-2 [15.1 kB] Get: 162 http://deb.debian.org/debian unstable/main arm64 libswitch-perl all 2.17-3 [20.3 kB] Get: 163 http://deb.debian.org/debian unstable/main arm64 libclone-perl arm64 0.47-1+b1 [13.7 kB] Get: 164 http://deb.debian.org/debian unstable/main arm64 libencode-locale-perl all 1.05-3 [12.9 kB] Get: 165 http://deb.debian.org/debian unstable/main arm64 libtimedate-perl all 2.3300-2 [39.3 kB] Get: 166 http://deb.debian.org/debian unstable/main arm64 libhttp-date-perl all 6.06-1 [10.7 kB] Get: 167 http://deb.debian.org/debian unstable/main arm64 libio-html-perl all 1.004-3 [16.2 kB] Get: 168 http://deb.debian.org/debian unstable/main arm64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get: 169 http://deb.debian.org/debian unstable/main arm64 liburi-perl all 5.34-2 [111 kB] Get: 170 http://deb.debian.org/debian unstable/main arm64 libhttp-message-perl all 7.01-1 [80.0 kB] Get: 171 http://deb.debian.org/debian unstable/main arm64 libparams-util-perl arm64 1.102-3+b1 [23.7 kB] Get: 172 http://deb.debian.org/debian unstable/main arm64 libsub-install-perl all 0.929-1 [10.5 kB] Get: 173 http://deb.debian.org/debian unstable/main arm64 libdata-optlist-perl all 0.114-1 [10.6 kB] Get: 174 http://deb.debian.org/debian unstable/main arm64 libb-hooks-op-check-perl arm64 0.22-3+b2 [10.6 kB] Get: 175 http://deb.debian.org/debian unstable/main arm64 libdynaloader-functions-perl all 0.004-2 [12.2 kB] Get: 176 http://deb.debian.org/debian unstable/main arm64 libdevel-callchecker-perl arm64 0.009-2 [15.7 kB] Get: 177 http://deb.debian.org/debian unstable/main arm64 libparams-classify-perl arm64 0.015-2+b4 [22.3 kB] Get: 178 http://deb.debian.org/debian unstable/main arm64 libmodule-runtime-perl all 0.018-1 [17.8 kB] Get: 179 http://deb.debian.org/debian unstable/main arm64 libtry-tiny-perl all 0.32-1 [22.9 kB] Get: 180 http://deb.debian.org/debian unstable/main arm64 libmodule-implementation-perl all 0.09-2 [12.6 kB] Get: 181 http://deb.debian.org/debian unstable/main arm64 libpackage-stash-perl all 0.40-1 [22.0 kB] Get: 182 http://deb.debian.org/debian unstable/main arm64 libclass-load-perl all 0.25-2 [15.3 kB] Get: 183 http://deb.debian.org/debian unstable/main arm64 libclass-load-xs-perl arm64 0.10-2+b4 [14.3 kB] Get: 184 http://deb.debian.org/debian unstable/main arm64 libsub-exporter-progressive-perl all 0.001013-3 [7496 B] Get: 185 http://deb.debian.org/debian unstable/main arm64 libdevel-globaldestruction-perl all 0.14-4 [7144 B] Get: 186 http://deb.debian.org/debian unstable/main arm64 libalgorithm-c3-perl all 0.11-2 [10.8 kB] Get: 187 http://deb.debian.org/debian unstable/main arm64 libclass-c3-perl all 0.35-2 [21.0 kB] Get: 188 http://deb.debian.org/debian unstable/main arm64 libmro-compat-perl all 0.15-2 [11.8 kB] Get: 189 http://deb.debian.org/debian unstable/main arm64 libdevel-overloadinfo-perl all 0.008-1 [7748 B] Get: 190 http://deb.debian.org/debian unstable/main arm64 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB] Get: 191 http://deb.debian.org/debian unstable/main arm64 libsub-exporter-perl all 0.990-1 [50.6 kB] Get: 192 http://deb.debian.org/debian unstable/main arm64 libeval-closure-perl all 0.14-3 [11.2 kB] Get: 193 http://deb.debian.org/debian unstable/main arm64 libdist-checkconflicts-perl all 0.11-2 [10.5 kB] Get: 194 http://deb.debian.org/debian unstable/main arm64 libmodule-runtime-conflicts-perl all 0.003-2 [7356 B] Get: 195 http://deb.debian.org/debian unstable/main arm64 libpackage-deprecationmanager-perl all 0.18-1 [17.6 kB] Get: 196 http://deb.debian.org/debian unstable/main arm64 libpackage-stash-xs-perl arm64 0.30-1+b4 [19.0 kB] Get: 197 http://deb.debian.org/debian unstable/main arm64 libmoose-perl arm64 2.4000-1 [766 kB] Get: 198 http://deb.debian.org/debian unstable/main arm64 libvariable-magic-perl arm64 0.64-1+b1 [43.9 kB] Get: 199 http://deb.debian.org/debian unstable/main arm64 libb-hooks-endofscope-perl all 0.28-2 [17.6 kB] Get: 200 http://deb.debian.org/debian unstable/main arm64 libsub-identify-perl arm64 0.14-3+b3 [11.2 kB] Get: 201 http://deb.debian.org/debian unstable/main arm64 libsub-name-perl arm64 0.28-1 [12.1 kB] Get: 202 http://deb.debian.org/debian unstable/main arm64 libnamespace-clean-perl all 0.27-2 [17.8 kB] Get: 203 http://deb.debian.org/debian unstable/main arm64 libngtcp2-crypto-gnutls8 arm64 1.16.0-1 [23.8 kB] Get: 204 http://deb.debian.org/debian unstable/main arm64 libcurl3t64-gnutls arm64 8.17.0~rc3-1 [362 kB] Get: 205 http://deb.debian.org/debian unstable/main arm64 libwww-curl-perl arm64 4.17-12 [57.7 kB] Get: 206 http://deb.debian.org/debian unstable/main arm64 libwww-curl-simple-perl all 0.100191-3 [12.6 kB] Get: 207 http://deb.debian.org/debian unstable/main arm64 dh-r all 20250812 [42.6 kB] Get: 208 http://deb.debian.org/debian unstable/main arm64 r-cran-littler arm64 0.3.21-2 [92.2 kB] Get: 209 http://deb.debian.org/debian unstable/main arm64 littler all 0.3.21-2 [16.9 kB] Get: 210 http://deb.debian.org/debian unstable/main arm64 r-bioc-biocgenerics all 0.52.0-2 [627 kB] Get: 211 http://deb.debian.org/debian unstable/main arm64 r-cran-filelock arm64 1.0.3-1+b1 [28.1 kB] Get: 212 http://deb.debian.org/debian unstable/main arm64 r-bioc-dir.expiry all 1.14.0+ds-2 [32.3 kB] Get: 213 http://deb.debian.org/debian unstable/main arm64 r-bioc-basilisk.utils all 1.18.0+ds-2 [78.4 kB] Get: 214 http://deb.debian.org/debian unstable/main arm64 r-cran-rprojroot all 2.0.4-2 [125 kB] Get: 215 http://deb.debian.org/debian unstable/main arm64 r-cran-here all 1.0.1-2 [48.7 kB] Get: 216 http://deb.debian.org/debian unstable/main arm64 r-cran-jsonlite arm64 1.9.1+dfsg-1 [443 kB] Get: 217 http://deb.debian.org/debian unstable/main arm64 r-cran-lattice arm64 0.22-7-1 [1418 kB] Get: 218 http://deb.debian.org/debian unstable/main arm64 r-cran-matrix arm64 1.7-4-1 [4031 kB] Get: 219 http://deb.debian.org/debian unstable/main arm64 r-cran-pkgkitten all 0.2.4-1 [29.1 kB] Get: 220 http://deb.debian.org/debian unstable/main arm64 r-cran-png arm64 0.1-8-1+b2 [41.3 kB] Get: 221 http://deb.debian.org/debian unstable/main arm64 r-cran-rappdirs arm64 0.3.3-1+b1 [49.3 kB] Get: 222 http://deb.debian.org/debian unstable/main arm64 r-cran-rcpp arm64 1.1.0-1 [2096 kB] Get: 223 http://deb.debian.org/debian unstable/main arm64 r-cran-rcpptoml arm64 0.2.3+dfsg-1 [106 kB] Get: 224 http://deb.debian.org/debian unstable/main arm64 r-cran-rlang arm64 1.1.5-3 [1703 kB] Get: 225 http://deb.debian.org/debian unstable/main arm64 r-cran-withr all 3.0.2+dfsg-1 [226 kB] Get: 226 http://deb.debian.org/debian unstable/main arm64 r-cran-reticulate arm64 1.41.0.1+dfsg-1 [1546 kB] Fetched 122 MB in 1s (86.4 MB/s) Preconfiguring packages ... 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Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.3-3) ... Selecting previously unselected package libpython3.13-stdlib:arm64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.9-1_arm64.deb ... Unpacking libpython3.13-stdlib:arm64 (3.13.9-1) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.9-1_arm64.deb ... Unpacking python3.13 (3.13.9-1) ... 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Selecting previously unselected package libtirpc3t64:arm64. Preparing to unpack .../107-libtirpc3t64_1.3.6+ds-1_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:arm64 (1.3.6+ds-1) ... Selecting previously unselected package libxft2:arm64. Preparing to unpack .../108-libxft2_2.3.6-1+b4_arm64.deb ... Unpacking libxft2:arm64 (2.3.6-1+b4) ... Selecting previously unselected package x11-common. Preparing to unpack .../109-x11-common_1%3a7.7+26_all.deb ... Unpacking x11-common (1:7.7+26) ... Selecting previously unselected package libxss1:arm64. Preparing to unpack .../110-libxss1_1%3a1.2.3-1+b3_arm64.deb ... Unpacking libxss1:arm64 (1:1.2.3-1+b3) ... Selecting previously unselected package libtk8.6:arm64. 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Setting up libmodule-runtime-conflicts-perl (0.003-2) ... Setting up libclass-load-perl (0.25-2) ... Setting up r-base-core (4.5.1-1) ... Creating config file /etc/R/Renviron with new version Setting up r-cran-lattice (0.22-7-1) ... Setting up libpackage-deprecationmanager-perl (0.18-1) ... Setting up libdevel-overloadinfo-perl (0.008-1) ... Setting up libclass-load-xs-perl (0.10-2+b4) ... Setting up r-cran-pkgkitten (0.2.4-1) ... Setting up libb-hooks-endofscope-perl (0.28-2) ... Setting up r-cran-rappdirs (0.3.3-1+b1) ... Setting up r-cran-filelock (1.0.3-1+b1) ... Setting up r-cran-littler (0.3.21-2) ... Setting up r-cran-rcpp (1.1.0-1) ... Setting up r-bioc-biocgenerics (0.52.0-2) ... Setting up r-cran-rlang (1.1.5-3) ... Setting up r-base-dev (4.5.1-1) ... Setting up littler (0.3.21-2) ... Setting up r-cran-withr (3.0.2+dfsg-1) ... Setting up libmoose-perl:arm64 (2.4000-1) ... Setting up r-cran-rprojroot (2.0.4-2) ... Setting up r-cran-png (0.1-8-1+b2) ... Setting up r-cran-jsonlite (1.9.1+dfsg-1) ... Setting up libnamespace-clean-perl (0.27-2) ... Setting up r-cran-matrix (1.7-4-1) ... Setting up r-cran-here (1.0.1-2) ... Setting up r-cran-rcpptoml (0.2.3+dfsg-1) ... Setting up r-cran-reticulate (1.41.0.1+dfsg-1) ... Setting up r-bioc-dir.expiry (1.14.0+ds-2) ... Setting up r-bioc-basilisk.utils (1.18.0+ds-2) ... Setting up libwww-curl-simple-perl (0.100191-3) ... Setting up dh-r (20250812) ... Processing triggers for libc-bin (2.41-12) ... Processing triggers for ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/r-bioc-basilisk-1.18.0+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../r-bioc-basilisk_1.18.0+ds-1_source.changes dpkg-buildpackage: info: source package r-bioc-basilisk dpkg-buildpackage: info: source version 1.18.0+ds-1 dpkg-buildpackage: info: source distribution experimental dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --buildsystem R dh_auto_clean -O--buildsystem=R dh_autoreconf_clean -O--buildsystem=R dh_clean -O--buildsystem=R debian/rules binary dh binary --buildsystem R dh_update_autotools_config -O--buildsystem=R dh_autoreconf -O--buildsystem=R dh_auto_configure -O--buildsystem=R dh_auto_build -O--buildsystem=R dh_auto_test -O--buildsystem=R create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=R dh_prep -O--buildsystem=R dh_auto_install --destdir=debian/r-bioc-basilisk/ -O--buildsystem=R I: R Package: basilisk Version: 1.18.0 I: Building using R version 4.5.1-1 I: R API version: r-api-4.0 I: Using built-time from d/changelog: Tue, 26 Nov 2024 14:01:47 +0100 mkdir -p /build/reproducible-path/r-bioc-basilisk-1.18.0\+ds/debian/r-bioc-basilisk/usr/lib/R/site-library R CMD INSTALL -l /build/reproducible-path/r-bioc-basilisk-1.18.0\+ds/debian/r-bioc-basilisk/usr/lib/R/site-library --clean . --built-timestamp="'Tue, 26 Nov 2024 14:01:47 +0100'" * installing *source* package 'basilisk' ... ** this is package 'basilisk' version '1.18.0' file 'inst/doc/motivation.html' is missing file 'tests/testthat/test-install.R' has the wrong MD5 checksum ** using non-staged installation via StagedInstall field ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (basilisk) I: Using r-cran-reticulate for Depends:reticulate I: Using r-cran-knitr for Suggests:knitr I: Using r-cran-rmarkdown for Suggests:rmarkdown I: Using r-bioc-biocstyle for Suggests:BiocStyle I: Using r-cran-testthat for Suggests:testthat I: Using r-cran-callr for Suggests:callr I: Using r-bioc-dir.expiry for Imports:dir.expiry I: Using r-bioc-basilisk.utils for Imports:basilisk.utils (>= 1.15.1) I: BioConductor API version: r-api-bioc-3.20 I: Use r-bioc-basilisk as Debian binary package for variables substitution dh_installdocs -O--buildsystem=R dh_installchangelogs -O--buildsystem=R dh_installsystemduser -O--buildsystem=R dh_lintian -O--buildsystem=R dh_perl -O--buildsystem=R dh_link -O--buildsystem=R dh_strip_nondeterminism -O--buildsystem=R dh_compress -O--buildsystem=R dh_fixperms -O--buildsystem=R dh_missing -O--buildsystem=R dh_dwz -a -O--buildsystem=R dh_strip -a -O--buildsystem=R dh_makeshlibs -a -O--buildsystem=R dh_shlibdeps -a -O--buildsystem=R dh_installdeb -O--buildsystem=R dh_gencontrol -O--buildsystem=R dh_md5sums -O--buildsystem=R dh_builddeb -O--buildsystem=R dpkg-deb: building package 'r-bioc-basilisk' in '../r-bioc-basilisk_1.18.0+ds-1_arm64.deb'. dpkg-genbuildinfo --build=binary -O../r-bioc-basilisk_1.18.0+ds-1_arm64.buildinfo dpkg-genchanges --build=binary -O../r-bioc-basilisk_1.18.0+ds-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3317326 and its subdirectories I: Current time: Thu Oct 30 08:26:40 -12 2025 I: pbuilder-time-stamp: 1761856000 Thu Oct 30 20:26:40 UTC 2025 I: Signing ./b1/r-bioc-basilisk_1.18.0+ds-1_arm64.buildinfo as r-bioc-basilisk_1.18.0+ds-1_arm64.buildinfo.asc Thu Oct 30 20:26:40 UTC 2025 I: Signed ./b1/r-bioc-basilisk_1.18.0+ds-1_arm64.buildinfo as ./b1/r-bioc-basilisk_1.18.0+ds-1_arm64.buildinfo.asc Thu Oct 30 20:26:40 UTC 2025 - build #1 for r-bioc-basilisk/experimental/arm64 on codethink04-arm64 done. Starting cleanup. All cleanup done. Thu Oct 30 20:26:40 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-lJbGURAI, removing. /srv/reproducible-results/rbuild-debian/r-b-build.RRJcXJQJ: total 16 drwxrwxr-x 2 jenkins jenkins 4096 Oct 30 20:26 b1 drwxrwxr-x 2 jenkins jenkins 4096 Oct 30 20:25 b2 -rw-rw-r-- 1 jenkins jenkins 2206 Nov 26 2024 r-bioc-basilisk_1.18.0+ds-1.dsc -rw------- 1 jenkins jenkins 3414 Oct 30 20:25 rbuildlog.QpeUpoG /srv/reproducible-results/rbuild-debian/r-b-build.RRJcXJQJ/b1: total 264 -rw-r--r-- 1 jenkins jenkins 90467 Oct 30 20:26 build.log -rw-r--r-- 1 jenkins jenkins 3648 Oct 30 20:26 r-bioc-basilisk_1.18.0+ds-1.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2206 Oct 30 20:26 r-bioc-basilisk_1.18.0+ds-1.dsc -rw-r--r-- 1 jenkins jenkins 10709 Oct 30 20:26 r-bioc-basilisk_1.18.0+ds-1_arm64.buildinfo -rw-rw-r-- 1 jenkins jenkins 11591 Oct 30 20:26 r-bioc-basilisk_1.18.0+ds-1_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1259 Oct 30 20:26 r-bioc-basilisk_1.18.0+ds-1_arm64.changes -rw-r--r-- 1 jenkins jenkins 99384 Oct 30 20:26 r-bioc-basilisk_1.18.0+ds-1_arm64.deb -rw-r--r-- 1 jenkins jenkins 1712 Oct 30 20:26 r-bioc-basilisk_1.18.0+ds-1_source.changes -rw-r--r-- 1 jenkins jenkins 29756 Oct 30 20:26 r-bioc-basilisk_1.18.0+ds.orig.tar.xz /srv/reproducible-results/rbuild-debian/r-b-build.RRJcXJQJ/b2: total 0 Thu Oct 30 20:26:41 UTC 2025 I: Deleting $TMPDIR on codethink04-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Oct 30 08:25:42 -12 2025 I: pbuilder-time-stamp: 1761855942 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/experimental-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [r-bioc-basilisk_1.18.0+ds-1.dsc] I: copying [./r-bioc-basilisk_1.18.0+ds.orig.tar.xz] I: copying [./r-bioc-basilisk_1.18.0+ds-1.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./r-bioc-basilisk_1.18.0+ds-1.dsc: no acceptable signature found dpkg-source: info: extracting r-bioc-basilisk in r-bioc-basilisk-1.18.0+ds dpkg-source: info: unpacking r-bioc-basilisk_1.18.0+ds.orig.tar.xz dpkg-source: info: unpacking r-bioc-basilisk_1.18.0+ds-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying skip_failing_test.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3317326/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='experimental' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='9e48869fc3d448cf94f325040a0fe04f' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3317326' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.RRJcXJQJ/pbuilderrc_wVeR --distribution experimental --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/experimental-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.RRJcXJQJ/b1 --logfile b1/build.log r-bioc-basilisk_1.18.0+ds-1.dsc' SUDO_GID='109' SUDO_HOME='/var/lib/jenkins' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink04-arm64 6.12.48+deb13-cloud-arm64 #1 SMP Debian 6.12.48-1 (2025-09-20) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3317326/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-cran-reticulate, r-bioc-dir.expiry, r-bioc-basilisk.utils (>= 1.15.1), architecture-is-64-bit dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19964 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-r; however: Package dh-r is not installed. pbuilder-satisfydepends-dummy depends on r-base-dev; however: Package r-base-dev is not installed. pbuilder-satisfydepends-dummy depends on r-cran-reticulate; however: Package r-cran-reticulate is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-dir.expiry; however: Package r-bioc-dir.expiry is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-basilisk.utils (>= 1.15.1); however: Package r-bioc-basilisk.utils is not installed. pbuilder-satisfydepends-dummy depends on architecture-is-64-bit; however: Package architecture-is-64-bit is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: architecture-properties{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} dctrl-tools{a} debhelper{a} dh-autoreconf{a} dh-r{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} gettext{a} gettext-base{a} gfortran{a} gfortran-15{a} gfortran-15-aarch64-linux-gnu{a} gfortran-aarch64-linux-gnu{a} groff-base{a} icu-devtools{a} intltool-debian{a} libalgorithm-c3-perl{a} libarchive-zip-perl{a} libb-hooks-endofscope-perl{a} libb-hooks-op-check-perl{a} libblas-dev{a} libblas3{a} libbrotli1{a} libbz2-dev{a} libcairo2{a} libclass-c3-perl{a} libclass-load-perl{a} libclass-load-xs-perl{a} libclone-perl{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4t64{a} libdata-optlist-perl{a} libdatrie1{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libdevel-callchecker-perl{a} libdevel-globaldestruction-perl{a} libdevel-overloadinfo-perl{a} libdevel-stacktrace-perl{a} libdist-checkconflicts-perl{a} libdynaloader-functions-perl{a} libelf1t64{a} libencode-locale-perl{a} libeval-closure-perl{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran-15-dev{a} libgfortran5{a} libglib2.0-0t64{a} libgnutls30t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhttp-date-perl{a} libhttp-message-perl{a} libice6{a} libicu-dev{a} libicu76{a} libidn2-0{a} libio-html-perl{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} libldap2{a} liblerc4{a} liblwp-mediatypes-perl{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libmodule-implementation-perl{a} libmodule-runtime-conflicts-perl{a} libmodule-runtime-perl{a} libmoose-perl{a} libmro-compat-perl{a} libnamespace-clean-perl{a} libncurses-dev{a} libncurses6{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libngtcp2-crypto-ossl0{a} libp11-kit0{a} libpackage-deprecationmanager-perl{a} libpackage-stash-perl{a} libpackage-stash-xs-perl{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper2{a} libparams-classify-perl{a} libparams-util-perl{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpipeline1{a} libpixman-1-0{a} libpkgconf3{a} libpng-dev{a} libpng16-16t64{a} libproc2-0{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline-dev{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libsm6{a} libssh2-1t64{a} libsub-exporter-perl{a} libsub-exporter-progressive-perl{a} libsub-identify-perl{a} libsub-install-perl{a} libsub-name-perl{a} libswitch-perl{a} libtasn1-6{a} libtcl8.6{a} libtext-charwidth-perl{a} libtext-wrapi18n-perl{a} libthai-data{a} libthai0{a} libtiff6{a} libtimedate-perl{a} libtirpc-common{a} libtirpc-dev{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} libunistring5{a} liburi-perl{a} libvariable-magic-perl{a} libwebp7{a} libwww-curl-perl{a} libwww-curl-simple-perl{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2-16{a} libxmuu1{a} libxrender1{a} libxss1{a} libxt6t64{a} libzstd-dev{a} littler{a} m4{a} man-db{a} media-types{a} netbase{a} openssl{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} python3{a} python3-minimal{a} python3.13{a} python3.13-minimal{a} r-base-core{a} r-base-dev{a} r-bioc-basilisk.utils{a} r-bioc-biocgenerics{a} r-bioc-dir.expiry{a} r-cran-filelock{a} r-cran-here{a} r-cran-jsonlite{a} r-cran-lattice{a} r-cran-littler{a} r-cran-matrix{a} r-cran-pkgkitten{a} r-cran-png{a} r-cran-rappdirs{a} r-cran-rcpp{a} r-cran-rcpptoml{a} r-cran-reticulate{a} r-cran-rlang{a} r-cran-rprojroot{a} r-cran-withr{a} readline-common{a} sensible-utils{a} tzdata{a} ucf{a} unzip{a} x11-common{a} xauth{a} xdg-utils{a} zip{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc cme curl devscripts git-buildpackage krb5-locales libarchive-cpio-perl libclass-c3-xs-perl libdevel-lexalias-perl libdevel-partialdump-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libio-compress-brotli-perl libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools libsasl2-modules libx11-protocol-perl linux-sysctl-defaults lynx psmisc publicsuffix r-cran-callr r-cran-cli r-cran-covr r-cran-crayon r-cran-dbi r-cran-fs r-cran-glue r-cran-httr r-cran-knitr r-cran-lifecycle r-cran-magrittr r-cran-pillar r-cran-r.rsp r-cran-rmarkdown r-cran-rsqlite r-cran-sf r-cran-testthat r-cran-tibble r-cran-tinytest r-cran-usethis r-cran-vctrs r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 226 newly installed, 0 to remove and 0 not upgraded. Need to get 122 MB of archives. After unpacking 388 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main arm64 libexpat1 arm64 2.7.3-1 [96.5 kB] Get: 2 http://deb.debian.org/debian unstable/main arm64 libpython3.13-minimal arm64 3.13.9-1 [858 kB] Get: 3 http://deb.debian.org/debian unstable/main arm64 python3.13-minimal arm64 3.13.9-1 [2061 kB] Get: 4 http://deb.debian.org/debian unstable/main arm64 python3-minimal arm64 3.13.7-1 [27.2 kB] Get: 5 http://deb.debian.org/debian unstable/main arm64 media-types all 14.0.0 [30.8 kB] Get: 6 http://deb.debian.org/debian unstable/main arm64 netbase all 6.5 [12.4 kB] Get: 7 http://deb.debian.org/debian unstable/main arm64 tzdata all 2025b-5 [260 kB] Get: 8 http://deb.debian.org/debian unstable/main arm64 libffi8 arm64 3.5.2-2 [21.5 kB] Get: 9 http://deb.debian.org/debian unstable/main arm64 readline-common all 8.3-3 [74.8 kB] Get: 10 http://deb.debian.org/debian unstable/main arm64 libreadline8t64 arm64 8.3-3 [169 kB] Get: 11 http://deb.debian.org/debian unstable/main arm64 libpython3.13-stdlib arm64 3.13.9-1 [1900 kB] Get: 12 http://deb.debian.org/debian unstable/main arm64 python3.13 arm64 3.13.9-1 [764 kB] Get: 13 http://deb.debian.org/debian unstable/main arm64 libpython3-stdlib arm64 3.13.7-1 [10.2 kB] Get: 14 http://deb.debian.org/debian unstable/main arm64 python3 arm64 3.13.7-1 [28.3 kB] Get: 15 http://deb.debian.org/debian unstable/main arm64 libproc2-0 arm64 2:4.0.4-9 [62.8 kB] Get: 16 http://deb.debian.org/debian unstable/main arm64 procps arm64 2:4.0.4-9 [871 kB] Get: 17 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.26 [27.0 kB] Get: 18 http://deb.debian.org/debian unstable/main arm64 openssl arm64 3.5.4-1 [1457 kB] Get: 19 http://deb.debian.org/debian unstable/main arm64 ca-certificates all 20250419 [162 kB] Get: 20 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.46-5 [338 kB] Get: 21 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.46-5 [103 kB] Get: 22 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.46-5 [43.7 kB] Get: 23 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.23.1-2+b1 [241 kB] Get: 24 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-2 [69.0 kB] Get: 25 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-9 [1130 kB] Get: 26 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.41.2-4 [97.3 kB] Get: 27 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 28 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.1-1 [1453 kB] Get: 29 http://deb.debian.org/debian unstable/main arm64 libtext-charwidth-perl arm64 0.04-11+b4 [9652 B] Get: 30 http://deb.debian.org/debian unstable/main arm64 libtext-wrapi18n-perl all 0.06-10 [8808 B] Get: 31 http://deb.debian.org/debian unstable/main arm64 ucf all 3.0052 [43.3 kB] Get: 32 http://deb.debian.org/debian unstable/main arm64 architecture-properties arm64 0.2.6 [2336 B] Get: 33 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.20-2 [315 kB] Get: 34 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3.1 [494 kB] Get: 35 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20240727.1 [60.2 kB] Get: 36 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.18.1-2 [877 kB] Get: 37 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.23.1-2 [770 kB] Get: 38 http://deb.debian.org/debian unstable/main arm64 dctrl-tools arm64 2.24-3+b1 [125 kB] Get: 39 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.28 [92.4 kB] Get: 40 http://deb.debian.org/debian unstable/main arm64 libtool all 2.5.4-7 [540 kB] Get: 41 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 21 [12.2 kB] Get: 42 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 43 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 44 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 45 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.194-1 [184 kB] Get: 46 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.16-2 [100 kB] Get: 47 http://deb.debian.org/debian unstable/main arm64 libunistring5 arm64 1.3-2 [453 kB] Get: 48 http://deb.debian.org/debian unstable/main arm64 libxml2-16 arm64 2.15.1+dfsg-0.3 [591 kB] Get: 49 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.23.1-2+b1 [1612 kB] Get: 50 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 51 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 52 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.28 [941 kB] Get: 53 http://deb.debian.org/debian unstable/main arm64 zip arm64 3.0-15 [227 kB] Get: 54 http://deb.debian.org/debian unstable/main arm64 unzip arm64 6.0-29 [163 kB] Get: 55 http://deb.debian.org/debian unstable/main arm64 libpaper2 arm64 2.2.5-0.3+b2 [16.6 kB] Get: 56 http://deb.debian.org/debian unstable/main arm64 libpaper-utils arm64 2.2.5-0.3+b2 [16.4 kB] Get: 57 http://deb.debian.org/debian unstable/main arm64 xdg-utils all 1.2.1-2 [75.8 kB] Get: 58 http://deb.debian.org/debian unstable/main arm64 libblas3 arm64 3.12.1-7 [135 kB] Get: 59 http://deb.debian.org/debian unstable/main arm64 libbrotli1 arm64 1.1.0-2+b7 [308 kB] Get: 60 http://deb.debian.org/debian unstable/main arm64 libpng16-16t64 arm64 1.6.50-1 [275 kB] Get: 61 http://deb.debian.org/debian unstable/main arm64 libfreetype6 arm64 2.13.3+dfsg-1 [422 kB] Get: 62 http://deb.debian.org/debian unstable/main arm64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 63 http://deb.debian.org/debian unstable/main arm64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 64 http://deb.debian.org/debian unstable/main arm64 fontconfig-config arm64 2.15.0-2.4 [318 kB] Get: 65 http://deb.debian.org/debian unstable/main arm64 libfontconfig1 arm64 2.15.0-2.4 [387 kB] Get: 66 http://deb.debian.org/debian unstable/main arm64 libpixman-1-0 arm64 0.46.4-1 [174 kB] Get: 67 http://deb.debian.org/debian unstable/main arm64 libxau6 arm64 1:1.0.11-1 [20.6 kB] Get: 68 http://deb.debian.org/debian unstable/main arm64 libxdmcp6 arm64 1:1.1.5-1 [27.8 kB] Get: 69 http://deb.debian.org/debian unstable/main arm64 libxcb1 arm64 1.17.0-2+b1 [143 kB] Get: 70 http://deb.debian.org/debian unstable/main arm64 libx11-data all 2:1.8.12-1 [343 kB] Get: 71 http://deb.debian.org/debian unstable/main arm64 libx11-6 arm64 2:1.8.12-1 [795 kB] Get: 72 http://deb.debian.org/debian unstable/main arm64 libxcb-render0 arm64 1.17.0-2+b1 [115 kB] Get: 73 http://deb.debian.org/debian unstable/main arm64 libxcb-shm0 arm64 1.17.0-2+b1 [105 kB] Get: 74 http://deb.debian.org/debian unstable/main arm64 libxext6 arm64 2:1.3.4-1+b3 [49.2 kB] Get: 75 http://deb.debian.org/debian unstable/main arm64 libxrender1 arm64 1:0.9.12-1 [27.0 kB] Get: 76 http://deb.debian.org/debian unstable/main arm64 libcairo2 arm64 1.18.4-1+b1 [483 kB] Get: 77 http://deb.debian.org/debian unstable/main arm64 libnghttp3-9 arm64 1.12.0-1 [63.6 kB] Get: 78 http://deb.debian.org/debian unstable/main arm64 libngtcp2-16 arm64 1.16.0-1 [123 kB] Get: 79 http://deb.debian.org/debian unstable/main arm64 libkrb5support0 arm64 1.21.3-5 [32.4 kB] Get: 80 http://deb.debian.org/debian unstable/main arm64 libcom-err2 arm64 1.47.2-3+b3 [24.9 kB] Get: 81 http://deb.debian.org/debian unstable/main arm64 libk5crypto3 arm64 1.21.3-5 [81.2 kB] Get: 82 http://deb.debian.org/debian unstable/main arm64 libkeyutils1 arm64 1.6.3-6 [9716 B] Get: 83 http://deb.debian.org/debian unstable/main arm64 libkrb5-3 arm64 1.21.3-5 [308 kB] Get: 84 http://deb.debian.org/debian unstable/main arm64 libgssapi-krb5-2 arm64 1.21.3-5 [127 kB] Get: 85 http://deb.debian.org/debian unstable/main arm64 libidn2-0 arm64 2.3.8-4 [108 kB] Get: 86 http://deb.debian.org/debian unstable/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-10 [19.8 kB] Get: 87 http://deb.debian.org/debian unstable/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-10 [55.0 kB] Get: 88 http://deb.debian.org/debian unstable/main arm64 libldap2 arm64 2.6.10+dfsg-1 [179 kB] Get: 89 http://deb.debian.org/debian unstable/main arm64 libnghttp2-14 arm64 1.64.0-1.1+b1 [71.7 kB] Get: 90 http://deb.debian.org/debian unstable/main arm64 libngtcp2-crypto-ossl0 arm64 1.16.0-1 [25.7 kB] Get: 91 http://deb.debian.org/debian unstable/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB] Get: 92 http://deb.debian.org/debian unstable/main arm64 libp11-kit0 arm64 0.25.9-2 [420 kB] Get: 93 http://deb.debian.org/debian unstable/main arm64 libtasn1-6 arm64 4.20.0-2 [47.3 kB] Get: 94 http://deb.debian.org/debian unstable/main arm64 libgnutls30t64 arm64 3.8.10-3 [1384 kB] Get: 95 http://deb.debian.org/debian unstable/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-3 [56.3 kB] Get: 96 http://deb.debian.org/debian unstable/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Get: 97 http://deb.debian.org/debian unstable/main arm64 libcurl4t64 arm64 8.17.0~rc3-1 [370 kB] Get: 98 http://deb.debian.org/debian unstable/main arm64 libdeflate0 arm64 1.23-2 [42.4 kB] Get: 99 http://deb.debian.org/debian unstable/main arm64 libglib2.0-0t64 arm64 2.86.1-1 [1436 kB] Get: 100 http://deb.debian.org/debian unstable/main arm64 libicu76 arm64 76.1-4 [9524 kB] Get: 101 http://deb.debian.org/debian unstable/main arm64 libjpeg62-turbo arm64 1:2.1.5-4 [173 kB] Get: 102 http://deb.debian.org/debian unstable/main arm64 libgfortran5 arm64 15.2.0-7 [371 kB] Get: 103 http://deb.debian.org/debian unstable/main arm64 liblapack3 arm64 3.12.1-7 [1846 kB] Get: 104 http://deb.debian.org/debian unstable/main arm64 fontconfig arm64 2.15.0-2.4 [463 kB] Get: 105 http://deb.debian.org/debian unstable/main arm64 libfribidi0 arm64 1.0.16-3 [26.5 kB] Get: 106 http://deb.debian.org/debian unstable/main arm64 libgraphite2-3 arm64 1.3.14-11 [70.8 kB] Get: 107 http://deb.debian.org/debian unstable/main arm64 libharfbuzz0b arm64 12.1.0-1 [486 kB] Get: 108 http://deb.debian.org/debian unstable/main arm64 libthai-data all 0.1.29-2 [168 kB] Get: 109 http://deb.debian.org/debian unstable/main arm64 libdatrie1 arm64 0.2.13-4 [37.4 kB] Get: 110 http://deb.debian.org/debian unstable/main arm64 libthai0 arm64 0.1.29-2+b1 [48.4 kB] Get: 111 http://deb.debian.org/debian unstable/main arm64 libpango-1.0-0 arm64 1.56.3-2 [222 kB] Get: 112 http://deb.debian.org/debian unstable/main arm64 libpangoft2-1.0-0 arm64 1.56.3-2 [56.5 kB] Get: 113 http://deb.debian.org/debian unstable/main arm64 libpangocairo-1.0-0 arm64 1.56.3-2 [35.3 kB] Get: 114 http://deb.debian.org/debian unstable/main arm64 libtcl8.6 arm64 8.6.17+dfsg-1 [982 kB] Get: 115 http://deb.debian.org/debian unstable/main arm64 libjbig0 arm64 2.1-6.1+b2 [30.4 kB] Get: 116 http://deb.debian.org/debian unstable/main arm64 liblerc4 arm64 4.0.0+ds-5 [146 kB] Get: 117 http://deb.debian.org/debian unstable/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [114 kB] Get: 118 http://deb.debian.org/debian unstable/main arm64 libwebp7 arm64 1.5.0-0.1 [271 kB] Get: 119 http://deb.debian.org/debian unstable/main arm64 libtiff6 arm64 4.7.1-1 [334 kB] Get: 120 http://deb.debian.org/debian unstable/main arm64 libtirpc-common all 1.3.6+ds-1 [11.0 kB] Get: 121 http://deb.debian.org/debian unstable/main arm64 libtirpc3t64 arm64 1.3.6+ds-1 [79.1 kB] Get: 122 http://deb.debian.org/debian unstable/main arm64 libxft2 arm64 2.3.6-1+b4 [51.6 kB] Get: 123 http://deb.debian.org/debian unstable/main arm64 x11-common all 1:7.7+26 [217 kB] Get: 124 http://deb.debian.org/debian unstable/main arm64 libxss1 arm64 1:1.2.3-1+b3 [17.1 kB] Get: 125 http://deb.debian.org/debian unstable/main arm64 libtk8.6 arm64 8.6.17-1 [740 kB] Get: 126 http://deb.debian.org/debian unstable/main arm64 libice6 arm64 2:1.1.1-1 [62.1 kB] Get: 127 http://deb.debian.org/debian unstable/main arm64 libsm6 arm64 2:1.2.6-1 [36.4 kB] Get: 128 http://deb.debian.org/debian unstable/main arm64 libxt6t64 arm64 1:1.2.1-1.3 [182 kB] Get: 129 http://deb.debian.org/debian unstable/main arm64 r-base-core arm64 4.5.1-1 [28.4 MB] Get: 130 http://deb.debian.org/debian unstable/main arm64 libgfortran-15-dev arm64 15.2.0-7 [411 kB] Get: 131 http://deb.debian.org/debian unstable/main arm64 gfortran-15-aarch64-linux-gnu arm64 15.2.0-7 [10.8 MB] Get: 132 http://deb.debian.org/debian unstable/main arm64 gfortran-15 arm64 15.2.0-7 [18.0 kB] Get: 133 http://deb.debian.org/debian unstable/main arm64 gfortran-aarch64-linux-gnu arm64 4:15.2.0-4 [1280 B] Get: 134 http://deb.debian.org/debian unstable/main arm64 gfortran arm64 4:15.2.0-4 [1428 B] Get: 135 http://deb.debian.org/debian unstable/main arm64 libblas-dev arm64 3.12.1-7 [145 kB] Get: 136 http://deb.debian.org/debian unstable/main arm64 liblapack-dev arm64 3.12.1-7 [3829 kB] Get: 137 http://deb.debian.org/debian unstable/main arm64 libncurses6 arm64 6.5+20250216-2 [96.1 kB] Get: 138 http://deb.debian.org/debian unstable/main arm64 libncurses-dev arm64 6.5+20250216-2 [340 kB] Get: 139 http://deb.debian.org/debian unstable/main arm64 libreadline-dev arm64 8.3-3 [163 kB] Get: 140 http://deb.debian.org/debian unstable/main arm64 libjpeg62-turbo-dev arm64 1:2.1.5-4 [293 kB] Get: 141 http://deb.debian.org/debian unstable/main arm64 libjpeg-dev arm64 1:2.1.5-4 [72.2 kB] Get: 142 http://deb.debian.org/debian unstable/main arm64 libpcre2-16-0 arm64 10.46-1 [247 kB] Get: 143 http://deb.debian.org/debian unstable/main arm64 libpcre2-32-0 arm64 10.46-1 [238 kB] Get: 144 http://deb.debian.org/debian unstable/main arm64 libpcre2-posix3 arm64 10.46-1 [64.1 kB] Get: 145 http://deb.debian.org/debian unstable/main arm64 libpcre2-dev arm64 10.46-1 [750 kB] Get: 146 http://deb.debian.org/debian unstable/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Get: 147 http://deb.debian.org/debian unstable/main arm64 libpng-dev arm64 1.6.50-1 [361 kB] Get: 148 http://deb.debian.org/debian unstable/main arm64 libbz2-dev arm64 1.0.8-6 [31.9 kB] Get: 149 http://deb.debian.org/debian unstable/main arm64 liblzma-dev arm64 5.8.1-2 [344 kB] Get: 150 http://deb.debian.org/debian unstable/main arm64 icu-devtools arm64 76.1-4 [200 kB] Get: 151 http://deb.debian.org/debian unstable/main arm64 libicu-dev arm64 76.1-4 [10.6 MB] Get: 152 http://deb.debian.org/debian unstable/main arm64 libxmuu1 arm64 2:1.1.3-3+b4 [22.0 kB] Get: 153 http://deb.debian.org/debian unstable/main arm64 xauth arm64 1:1.1.2-1.1 [35.4 kB] Get: 154 http://deb.debian.org/debian unstable/main arm64 libpkgconf3 arm64 1.8.1-4 [35.3 kB] Get: 155 http://deb.debian.org/debian unstable/main arm64 pkgconf-bin arm64 1.8.1-4 [29.6 kB] Get: 156 http://deb.debian.org/debian unstable/main arm64 pkgconf arm64 1.8.1-4 [26.1 kB] Get: 157 http://deb.debian.org/debian unstable/main arm64 libtirpc-dev arm64 1.3.6+ds-1 [192 kB] Get: 158 http://deb.debian.org/debian unstable/main arm64 libdeflate-dev arm64 1.23-2 [51.3 kB] Get: 159 http://deb.debian.org/debian unstable/main arm64 libzstd-dev arm64 1.5.7+dfsg-2 [330 kB] Get: 160 http://deb.debian.org/debian unstable/main arm64 r-base-dev all 4.5.1-1 [4360 B] Get: 161 http://deb.debian.org/debian unstable/main arm64 libfile-which-perl all 1.27-2 [15.1 kB] Get: 162 http://deb.debian.org/debian unstable/main arm64 libswitch-perl all 2.17-3 [20.3 kB] Get: 163 http://deb.debian.org/debian unstable/main arm64 libclone-perl arm64 0.47-1+b1 [13.7 kB] Get: 164 http://deb.debian.org/debian unstable/main arm64 libencode-locale-perl all 1.05-3 [12.9 kB] Get: 165 http://deb.debian.org/debian unstable/main arm64 libtimedate-perl all 2.3300-2 [39.3 kB] Get: 166 http://deb.debian.org/debian unstable/main arm64 libhttp-date-perl all 6.06-1 [10.7 kB] Get: 167 http://deb.debian.org/debian unstable/main arm64 libio-html-perl all 1.004-3 [16.2 kB] Get: 168 http://deb.debian.org/debian unstable/main arm64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get: 169 http://deb.debian.org/debian unstable/main arm64 liburi-perl all 5.34-2 [111 kB] Get: 170 http://deb.debian.org/debian unstable/main arm64 libhttp-message-perl all 7.01-1 [80.0 kB] Get: 171 http://deb.debian.org/debian unstable/main arm64 libparams-util-perl arm64 1.102-3+b1 [23.7 kB] Get: 172 http://deb.debian.org/debian unstable/main arm64 libsub-install-perl all 0.929-1 [10.5 kB] Get: 173 http://deb.debian.org/debian unstable/main arm64 libdata-optlist-perl all 0.114-1 [10.6 kB] Get: 174 http://deb.debian.org/debian unstable/main arm64 libb-hooks-op-check-perl arm64 0.22-3+b2 [10.6 kB] Get: 175 http://deb.debian.org/debian unstable/main arm64 libdynaloader-functions-perl all 0.004-2 [12.2 kB] Get: 176 http://deb.debian.org/debian unstable/main arm64 libdevel-callchecker-perl arm64 0.009-2 [15.7 kB] Get: 177 http://deb.debian.org/debian unstable/main arm64 libparams-classify-perl arm64 0.015-2+b4 [22.3 kB] Get: 178 http://deb.debian.org/debian unstable/main arm64 libmodule-runtime-perl all 0.018-1 [17.8 kB] Get: 179 http://deb.debian.org/debian unstable/main arm64 libtry-tiny-perl all 0.32-1 [22.9 kB] Get: 180 http://deb.debian.org/debian unstable/main arm64 libmodule-implementation-perl all 0.09-2 [12.6 kB] Get: 181 http://deb.debian.org/debian unstable/main arm64 libpackage-stash-perl all 0.40-1 [22.0 kB] Get: 182 http://deb.debian.org/debian unstable/main arm64 libclass-load-perl all 0.25-2 [15.3 kB] Get: 183 http://deb.debian.org/debian unstable/main arm64 libclass-load-xs-perl arm64 0.10-2+b4 [14.3 kB] Get: 184 http://deb.debian.org/debian unstable/main arm64 libsub-exporter-progressive-perl all 0.001013-3 [7496 B] Get: 185 http://deb.debian.org/debian unstable/main arm64 libdevel-globaldestruction-perl all 0.14-4 [7144 B] Get: 186 http://deb.debian.org/debian unstable/main arm64 libalgorithm-c3-perl all 0.11-2 [10.8 kB] Get: 187 http://deb.debian.org/debian unstable/main arm64 libclass-c3-perl all 0.35-2 [21.0 kB] Get: 188 http://deb.debian.org/debian unstable/main arm64 libmro-compat-perl all 0.15-2 [11.8 kB] Get: 189 http://deb.debian.org/debian unstable/main arm64 libdevel-overloadinfo-perl all 0.008-1 [7748 B] Get: 190 http://deb.debian.org/debian unstable/main arm64 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB] Get: 191 http://deb.debian.org/debian unstable/main arm64 libsub-exporter-perl all 0.990-1 [50.6 kB] Get: 192 http://deb.debian.org/debian unstable/main arm64 libeval-closure-perl all 0.14-3 [11.2 kB] Get: 193 http://deb.debian.org/debian unstable/main arm64 libdist-checkconflicts-perl all 0.11-2 [10.5 kB] Get: 194 http://deb.debian.org/debian unstable/main arm64 libmodule-runtime-conflicts-perl all 0.003-2 [7356 B] Get: 195 http://deb.debian.org/debian unstable/main arm64 libpackage-deprecationmanager-perl all 0.18-1 [17.6 kB] Get: 196 http://deb.debian.org/debian unstable/main arm64 libpackage-stash-xs-perl arm64 0.30-1+b4 [19.0 kB] Get: 197 http://deb.debian.org/debian unstable/main arm64 libmoose-perl arm64 2.4000-1 [766 kB] Get: 198 http://deb.debian.org/debian unstable/main arm64 libvariable-magic-perl arm64 0.64-1+b1 [43.9 kB] Get: 199 http://deb.debian.org/debian unstable/main arm64 libb-hooks-endofscope-perl all 0.28-2 [17.6 kB] Get: 200 http://deb.debian.org/debian unstable/main arm64 libsub-identify-perl arm64 0.14-3+b3 [11.2 kB] Get: 201 http://deb.debian.org/debian unstable/main arm64 libsub-name-perl arm64 0.28-1 [12.1 kB] Get: 202 http://deb.debian.org/debian unstable/main arm64 libnamespace-clean-perl all 0.27-2 [17.8 kB] Get: 203 http://deb.debian.org/debian unstable/main arm64 libngtcp2-crypto-gnutls8 arm64 1.16.0-1 [23.8 kB] Get: 204 http://deb.debian.org/debian unstable/main arm64 libcurl3t64-gnutls arm64 8.17.0~rc3-1 [362 kB] Get: 205 http://deb.debian.org/debian unstable/main arm64 libwww-curl-perl arm64 4.17-12 [57.7 kB] Get: 206 http://deb.debian.org/debian unstable/main arm64 libwww-curl-simple-perl all 0.100191-3 [12.6 kB] Get: 207 http://deb.debian.org/debian unstable/main arm64 dh-r all 20250812 [42.6 kB] Get: 208 http://deb.debian.org/debian unstable/main arm64 r-cran-littler arm64 0.3.21-2 [92.2 kB] Get: 209 http://deb.debian.org/debian unstable/main arm64 littler all 0.3.21-2 [16.9 kB] Get: 210 http://deb.debian.org/debian unstable/main arm64 r-bioc-biocgenerics all 0.52.0-2 [627 kB] Get: 211 http://deb.debian.org/debian unstable/main arm64 r-cran-filelock arm64 1.0.3-1+b1 [28.1 kB] Get: 212 http://deb.debian.org/debian unstable/main arm64 r-bioc-dir.expiry all 1.14.0+ds-2 [32.3 kB] Get: 213 http://deb.debian.org/debian unstable/main arm64 r-bioc-basilisk.utils all 1.18.0+ds-2 [78.4 kB] Get: 214 http://deb.debian.org/debian unstable/main arm64 r-cran-rprojroot all 2.0.4-2 [125 kB] Get: 215 http://deb.debian.org/debian unstable/main arm64 r-cran-here all 1.0.1-2 [48.7 kB] Get: 216 http://deb.debian.org/debian unstable/main arm64 r-cran-jsonlite arm64 1.9.1+dfsg-1 [443 kB] Get: 217 http://deb.debian.org/debian unstable/main arm64 r-cran-lattice arm64 0.22-7-1 [1418 kB] Get: 218 http://deb.debian.org/debian unstable/main arm64 r-cran-matrix arm64 1.7-4-1 [4031 kB] Get: 219 http://deb.debian.org/debian unstable/main arm64 r-cran-pkgkitten all 0.2.4-1 [29.1 kB] Get: 220 http://deb.debian.org/debian unstable/main arm64 r-cran-png arm64 0.1-8-1+b2 [41.3 kB] Get: 221 http://deb.debian.org/debian unstable/main arm64 r-cran-rappdirs arm64 0.3.3-1+b1 [49.3 kB] Get: 222 http://deb.debian.org/debian unstable/main arm64 r-cran-rcpp arm64 1.1.0-1 [2096 kB] Get: 223 http://deb.debian.org/debian unstable/main arm64 r-cran-rcpptoml arm64 0.2.3+dfsg-1 [106 kB] Get: 224 http://deb.debian.org/debian unstable/main arm64 r-cran-rlang arm64 1.1.5-3 [1703 kB] Get: 225 http://deb.debian.org/debian unstable/main arm64 r-cran-withr all 3.0.2+dfsg-1 [226 kB] Get: 226 http://deb.debian.org/debian unstable/main arm64 r-cran-reticulate arm64 1.41.0.1+dfsg-1 [1546 kB] Fetched 122 MB 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Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.3-3) ... Selecting previously unselected package libpython3.13-stdlib:arm64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.9-1_arm64.deb ... Unpacking libpython3.13-stdlib:arm64 (3.13.9-1) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.9-1_arm64.deb ... Unpacking python3.13 (3.13.9-1) ... 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Selecting previously unselected package libtirpc3t64:arm64. Preparing to unpack .../107-libtirpc3t64_1.3.6+ds-1_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:arm64 (1.3.6+ds-1) ... Selecting previously unselected package libxft2:arm64. Preparing to unpack .../108-libxft2_2.3.6-1+b4_arm64.deb ... Unpacking libxft2:arm64 (2.3.6-1+b4) ... Selecting previously unselected package x11-common. Preparing to unpack .../109-x11-common_1%3a7.7+26_all.deb ... Unpacking x11-common (1:7.7+26) ... Selecting previously unselected package libxss1:arm64. Preparing to unpack .../110-libxss1_1%3a1.2.3-1+b3_arm64.deb ... Unpacking libxss1:arm64 (1:1.2.3-1+b3) ... Selecting previously unselected package libtk8.6:arm64. 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Setting up libmodule-runtime-conflicts-perl (0.003-2) ... Setting up libclass-load-perl (0.25-2) ... Setting up r-base-core (4.5.1-1) ... Creating config file /etc/R/Renviron with new version Setting up r-cran-lattice (0.22-7-1) ... Setting up libpackage-deprecationmanager-perl (0.18-1) ... Setting up libdevel-overloadinfo-perl (0.008-1) ... Setting up libclass-load-xs-perl (0.10-2+b4) ... Setting up r-cran-pkgkitten (0.2.4-1) ... Setting up libb-hooks-endofscope-perl (0.28-2) ... Setting up r-cran-rappdirs (0.3.3-1+b1) ... Setting up r-cran-filelock (1.0.3-1+b1) ... Setting up r-cran-littler (0.3.21-2) ... Setting up r-cran-rcpp (1.1.0-1) ... Setting up r-bioc-biocgenerics (0.52.0-2) ... Setting up r-cran-rlang (1.1.5-3) ... Setting up r-base-dev (4.5.1-1) ... Setting up littler (0.3.21-2) ... Setting up r-cran-withr (3.0.2+dfsg-1) ... Setting up libmoose-perl:arm64 (2.4000-1) ... Setting up r-cran-rprojroot (2.0.4-2) ... Setting up r-cran-png (0.1-8-1+b2) ... Setting up r-cran-jsonlite (1.9.1+dfsg-1) ... Setting up libnamespace-clean-perl (0.27-2) ... Setting up r-cran-matrix (1.7-4-1) ... Setting up r-cran-here (1.0.1-2) ... Setting up r-cran-rcpptoml (0.2.3+dfsg-1) ... Setting up r-cran-reticulate (1.41.0.1+dfsg-1) ... Setting up r-bioc-dir.expiry (1.14.0+ds-2) ... Setting up r-bioc-basilisk.utils (1.18.0+ds-2) ... Setting up libwww-curl-simple-perl (0.100191-3) ... Setting up dh-r (20250812) ... Processing triggers for libc-bin (2.41-12) ... Processing triggers for ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/r-bioc-basilisk-1.18.0+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../r-bioc-basilisk_1.18.0+ds-1_source.changes dpkg-buildpackage: info: source package r-bioc-basilisk dpkg-buildpackage: info: source version 1.18.0+ds-1 dpkg-buildpackage: info: source distribution experimental dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --buildsystem R dh_auto_clean -O--buildsystem=R dh_autoreconf_clean -O--buildsystem=R dh_clean -O--buildsystem=R debian/rules binary dh binary --buildsystem R dh_update_autotools_config -O--buildsystem=R dh_autoreconf -O--buildsystem=R dh_auto_configure -O--buildsystem=R dh_auto_build -O--buildsystem=R dh_auto_test -O--buildsystem=R create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=R dh_prep -O--buildsystem=R dh_auto_install --destdir=debian/r-bioc-basilisk/ -O--buildsystem=R I: R Package: basilisk Version: 1.18.0 I: Building using R version 4.5.1-1 I: R API version: r-api-4.0 I: Using built-time from d/changelog: Tue, 26 Nov 2024 14:01:47 +0100 mkdir -p /build/reproducible-path/r-bioc-basilisk-1.18.0\+ds/debian/r-bioc-basilisk/usr/lib/R/site-library R CMD INSTALL -l /build/reproducible-path/r-bioc-basilisk-1.18.0\+ds/debian/r-bioc-basilisk/usr/lib/R/site-library --clean . --built-timestamp="'Tue, 26 Nov 2024 14:01:47 +0100'" * installing *source* package 'basilisk' ... ** this is package 'basilisk' version '1.18.0' file 'inst/doc/motivation.html' is missing file 'tests/testthat/test-install.R' has the wrong MD5 checksum ** using non-staged installation via StagedInstall field ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (basilisk) I: Using r-cran-reticulate for Depends:reticulate I: Using r-cran-knitr for Suggests:knitr I: Using r-cran-rmarkdown for Suggests:rmarkdown I: Using r-bioc-biocstyle for Suggests:BiocStyle I: Using r-cran-testthat for Suggests:testthat I: Using r-cran-callr for Suggests:callr I: Using r-bioc-dir.expiry for Imports:dir.expiry I: Using r-bioc-basilisk.utils for Imports:basilisk.utils (>= 1.15.1) I: BioConductor API version: r-api-bioc-3.20 I: Use r-bioc-basilisk as Debian binary package for variables substitution dh_installdocs -O--buildsystem=R dh_installchangelogs -O--buildsystem=R dh_installsystemduser -O--buildsystem=R dh_lintian -O--buildsystem=R dh_perl -O--buildsystem=R dh_link -O--buildsystem=R dh_strip_nondeterminism -O--buildsystem=R dh_compress -O--buildsystem=R dh_fixperms -O--buildsystem=R dh_missing -O--buildsystem=R dh_dwz -a -O--buildsystem=R dh_strip -a -O--buildsystem=R dh_makeshlibs -a -O--buildsystem=R dh_shlibdeps -a -O--buildsystem=R dh_installdeb -O--buildsystem=R dh_gencontrol -O--buildsystem=R dh_md5sums -O--buildsystem=R dh_builddeb -O--buildsystem=R dpkg-deb: building package 'r-bioc-basilisk' in '../r-bioc-basilisk_1.18.0+ds-1_arm64.deb'. dpkg-genbuildinfo --build=binary -O../r-bioc-basilisk_1.18.0+ds-1_arm64.buildinfo dpkg-genchanges --build=binary -O../r-bioc-basilisk_1.18.0+ds-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3317326 and its subdirectories I: Current time: Thu Oct 30 08:26:40 -12 2025 I: pbuilder-time-stamp: 1761856000 Thu Oct 30 20:26:41 UTC 2025 I: 1st build successful. Starting 2nd build on remote node codethink03-arm64.debian.net. Thu Oct 30 20:26:41 UTC 2025 I: Preparing to do remote build '2' on codethink03-arm64.debian.net. Thu Oct 30 20:26:41 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink03-arm64.debian.net is marked as down. Thu Oct 30 20:26:41 UTC 2025 - checking via ssh if codethink03-arm64.debian.net is up. removed '/tmp/read-only-fs-test-Ao93oS' ==================================================================================== Thu Oct 30 20:26:42 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on codethink03-arm64, called using "2 r-bioc-basilisk experimental /srv/reproducible-results/rbuild-debian/r-b-build.RRJcXJQJ 1.18.0+ds-1" as arguments. Thu Oct 30 20:26:42 UTC 2025 - actually running "reproducible_build.sh" (md5sum cc591790ab2c8e13f5e554202b95c89c) as "/tmp/jenkins-script-nAQkfnfU" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Thu Oct 30 20:26:42 UTC 2025 I: Downloading source for experimental/r-bioc-basilisk=1.18.0+ds-1 Reading package lists... NOTICE: 'r-bioc-basilisk' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/r-pkg-team/r-bioc-basilisk.git Please use: git clone https://salsa.debian.org/r-pkg-team/r-bioc-basilisk.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 35.6 kB of source archives. Get:1 http://deb.debian.org/debian experimental/main r-bioc-basilisk 1.18.0+ds-1 (dsc) [2206 B] Get:2 http://deb.debian.org/debian experimental/main r-bioc-basilisk 1.18.0+ds-1 (tar) [29.8 kB] Get:3 http://deb.debian.org/debian experimental/main r-bioc-basilisk 1.18.0+ds-1 (diff) [3648 B] Fetched 35.6 kB in 0s (2891 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'r-bioc-basilisk' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/r-pkg-team/r-bioc-basilisk.git Please use: git clone https://salsa.debian.org/r-pkg-team/r-bioc-basilisk.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 35.6 kB of source archives. Get:1 http://deb.debian.org/debian experimental/main r-bioc-basilisk 1.18.0+ds-1 (dsc) [2206 B] Get:2 http://deb.debian.org/debian experimental/main r-bioc-basilisk 1.18.0+ds-1 (tar) [29.8 kB] Get:3 http://deb.debian.org/debian experimental/main r-bioc-basilisk 1.18.0+ds-1 (diff) [3648 B] Fetched 35.6 kB in 0s (2891 kB/s) Download complete and in download only mode ============================================================================= Re-Building r-bioc-basilisk in experimental on arm64 on codethink03-arm64 now. Date: Thu Oct 30 20:26:42 GMT 2025 Date UTC: Thu Oct 30 20:26:42 UTC 2025 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.RRJcXJQJ + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.RRJcXJQJ/pbuilderrc_VdRM + case ${ARCH} in + case $ARCH in + locale=nl_BE + language=nl + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' r-bioc-basilisk = debian-installer -o r-bioc-basilisk = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' r-bioc-basilisk = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.RRJcXJQJ/pbuilderrc_VdRM --distribution experimental --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/experimental-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.RRJcXJQJ/b2 --logfile b2/build.log r-bioc-basilisk_1.18.0+ds-1.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Fri Oct 31 10:26:42 +14 2025 I: pbuilder-time-stamp: 1761856002 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/experimental-reproducible-base.tgz] tar: ./build: time stamp 2026-11-29 03:57:36 is 34018252.77718071 s in the future tar: ./dev/null: time stamp 2026-11-29 03:57:21 is 34018237.77706639 s in the future tar: ./dev/zero: time stamp 2026-11-29 03:57:21 is 34018237.77705447 s in the future tar: ./dev/full: time stamp 2026-11-29 03:57:21 is 34018237.77704563 s in the future tar: ./dev/random: time stamp 2026-11-29 03:57:21 is 34018237.77703635 s in the future tar: ./dev/urandom: time stamp 2026-11-29 03:57:21 is 34018237.77702791 s in the future tar: ./dev/tty: time stamp 2026-11-29 03:57:21 is 34018237.77701955 s in the future tar: ./dev/console: time stamp 2026-11-29 03:57:21 is 34018237.77701107 s in the future tar: ./dev/pts: time stamp 2026-11-29 03:57:21 is 34018237.77700179 s in the future tar: ./dev/ptmx: time stamp 2026-11-29 03:57:21 is 34018237.77697771 s in the future tar: ./etc/ld.so.cache: time stamp 2026-12-01 06:31:24 is 34200280.77683935 s in the future tar: ./etc/default: time stamp 2026-11-29 03:57:40 is 34018256.77678159 s in the future tar: ./etc/dpkg/origins/default: time stamp 2026-11-29 03:57:21 is 34018237.77673659 s in the future tar: ./etc/dpkg/origins: time stamp 2026-11-29 03:57:27 is 34018243.77672911 s in the future tar: ./etc/dpkg/dpkg.cfg.d/02speedup: time stamp 2026-11-29 03:57:53 is 34018269.77669431 s in the future tar: ./etc/dpkg/dpkg.cfg.d: time stamp 2026-11-29 03:57:53 is 34018269.77668679 s in the future tar: ./etc/dpkg: time stamp 2026-11-29 03:57:36 is 34018252.77665895 s in the future tar: ./etc/skel: time stamp 2026-11-29 03:57:27 is 34018243.77656151 s in the future tar: ./etc/update-motd.d: time stamp 2026-11-29 03:57:27 is 34018243.77654147 s in the future tar: ./etc/apt/sources.list: time stamp 2026-11-29 03:57:53 is 34018269.77651151 s in the future tar: ./etc/apt/apt.conf.d/80proxy: time stamp 2026-11-29 03:57:53 is 34018269.77649587 s in the future tar: ./etc/apt/apt.conf.d/15pbuilder: time stamp 2026-11-29 03:57:36 is 34018252.77646547 s in the future tar: ./etc/apt/apt.conf.d: time stamp 2026-11-29 12:29:48 is 34048984.77645939 s in the future tar: ./etc/apt/preferences.d/reproducible: time stamp 2026-11-29 03:58:04 is 34018280.77643243 s in the future tar: ./etc/apt/preferences.d: time stamp 2026-11-29 03:58:04 is 34018280.77598171 s in the future tar: 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tar: ./etc/security: time stamp 2026-11-29 03:57:27 is 34018243.76888015 s in the future tar: ./etc/pam.d/common-auth: time stamp 2026-11-29 03:57:28 is 34018244.76880187 s in the future tar: ./etc/pam.d/common-account: time stamp 2026-11-29 03:57:28 is 34018244.76878243 s in the future tar: ./etc/pam.d/common-password: time stamp 2026-11-29 03:57:28 is 34018244.76877067 s in the future tar: ./etc/pam.d/common-session: time stamp 2026-11-29 03:57:28 is 34018244.76875991 s in the future tar: ./etc/pam.d/common-session-noninteractive: time stamp 2026-11-29 03:57:28 is 34018244.76874739 s in the future tar: ./etc/pam.d: time stamp 2026-11-29 03:57:40 is 34018256.76868979 s in the future tar: ./etc/terminfo: time stamp 2026-11-29 03:57:27 is 34018243.76866603 s in the future tar: ./etc/fstab: time stamp 2026-11-29 03:57:21 is 34018237.76865531 s in the future tar: ./etc/subuid: time stamp 2026-11-29 03:57:21 is 34018237.76864283 s in the future tar: ./etc/subgid: time stamp 2026-11-29 03:57:21 is 34018237.76863331 s in the future tar: ./etc/opt: time stamp 2026-11-29 03:57:21 is 34018237.76860527 s in the future tar: ./etc/shells: time stamp 2026-11-29 03:57:27 is 34018243.76859411 s in the future tar: ./etc/environment: time stamp 2026-11-29 03:57:27 is 34018243.76857107 s in the future tar: ./etc/kernel: time stamp 2026-11-29 03:57:28 is 34018244.76855351 s in the future tar: ./etc/perl/Net: time stamp 2026-11-29 03:57:35 is 34018251.76852955 s in the future tar: ./etc/perl: time stamp 2026-11-29 03:57:35 is 34018251.76852391 s in the future tar: ./etc/selinux: time stamp 2026-11-29 03:57:40 is 34018256.76802003 s in the future tar: ./etc/.pwd.lock: time stamp 2026-11-29 03:57:40 is 34018256.76800063 s in the future tar: ./etc/shadow: time stamp 2026-11-29 03:57:40 is 34018256.76794159 s in the future tar: ./etc/passwd-: time stamp 2026-11-29 03:57:21 is 34018237.76791011 s in the future tar: ./etc/passwd: time stamp 2026-11-29 03:57:40 is 34018256.76789647 s in the future tar: ./etc/gshadow: time stamp 2026-11-29 03:57:40 is 34018256.76787523 s in the future tar: ./etc/group-: time stamp 2026-11-29 03:57:21 is 34018237.76785303 s in the future tar: ./etc/group: time stamp 2026-11-29 03:57:40 is 34018256.76784023 s in the future tar: ./media: time stamp 2026-11-29 03:57:21 is 34018237.76759291 s in the future tar: ./mnt: time stamp 2026-11-29 03:57:21 is 34018237.76757287 s in the future tar: ./opt: time stamp 2026-11-29 03:57:21 is 34018237.76756335 s in the future tar: ./root: time stamp 2026-11-29 03:57:21 is 34018237.76752255 s in the future tar: ./run/lock: time stamp 2026-11-29 03:57:21 is 34018237.76749239 s in the future tar: ./srv: time stamp 2026-11-29 03:57:21 is 34018237.76747163 s in the future tar: ./usr/include/aarch64-linux-gnu/bits/types: time stamp 2026-11-29 03:57:32 is 34018248.16066551 s in the future tar: ./usr/include/aarch64-linux-gnu/bits: time stamp 2026-11-29 03:57:32 is 34018248.15501879 s in the future tar: ./usr/include/aarch64-linux-gnu/gnu: time stamp 2026-11-29 03:57:32 is 34018248.15487951 s in the future tar: ./usr/include/aarch64-linux-gnu/sys: time stamp 2026-11-29 03:57:32 is 34018248.15211383 s in the future tar: ./usr/include/aarch64-linux-gnu/c++/15/bits: time stamp 2026-11-29 03:57:34 is 34018250.15059959 s in the future tar: ./usr/include/aarch64-linux-gnu/c++/15/ext: time stamp 2026-11-29 03:57:34 is 34018250.15054187 s in the future tar: ./usr/include/aarch64-linux-gnu/c++/15: time stamp 2026-11-29 03:57:34 is 34018250.15053515 s in the future tar: ./usr/include/aarch64-linux-gnu/c++: time stamp 2026-11-29 03:57:34 is 34018250.15052955 s in the future tar: ./usr/include/arpa: time stamp 2026-11-29 03:57:32 is 34018248.14965815 s in the future tar: ./usr/include/finclude/aarch64-linux-gnu: time stamp 2026-11-29 03:57:32 is 34018248.14961243 s in the future tar: ./usr/include/finclude: time stamp 2026-11-29 03:57:32 is 34018248.14960603 s in the future tar: 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2026-11-29 03:57:32 is 34018248.14826535 s in the future tar: ./usr/include/nfs: time stamp 2026-11-29 03:57:32 is 34018248.14824255 s in the future tar: ./usr/include/protocols: time stamp 2026-11-29 03:57:32 is 34018248.14764027 s in the future tar: ./usr/include/rpc: time stamp 2026-11-29 03:57:32 is 34018248.14760703 s in the future tar: ./usr/include/scsi/fc: time stamp 2026-11-29 03:57:35 is 34018251.14728515 s in the future tar: ./usr/include/scsi: time stamp 2026-11-29 03:57:35 is 34018251.14700903 s in the future tar: ./usr/include/c++/15/backward: time stamp 2026-11-29 03:57:34 is 34018250.13831059 s in the future tar: ./usr/include/c++/15/bits: time stamp 2026-11-29 03:57:34 is 34018250.10895119 s in the future tar: ./usr/include/c++/15/debug: time stamp 2026-11-29 03:57:34 is 34018250.10565891 s in the future tar: ./usr/include/c++/15/decimal: time stamp 2026-11-29 03:57:34 is 34018250.10541823 s in the future tar: ./usr/include/c++/15/experimental/bits: time stamp 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future tar: ./usr/lib/locale/ar_KW.utf8/LC_MESSAGES: time stamp 2026-11-29 03:57:43 is 34018253.90114831 s in the future tar: ./usr/lib/locale/ar_KW.utf8: time stamp 2026-11-29 03:57:43 is 34018253.90114223 s in the future tar: ./usr/lib/locale/ar_KW/LC_MESSAGES: time stamp 2026-11-29 03:57:43 is 34018253.90113479 s in the future tar: ./usr/lib/locale/ar_KW: time stamp 2026-11-29 03:57:43 is 34018253.90112831 s in the future tar: ./usr/lib/locale/ar_JO.utf8/LC_MESSAGES: time stamp 2026-11-29 03:57:43 is 34018253.90112047 s in the future tar: ./usr/lib/locale/ar_JO.utf8: time stamp 2026-11-29 03:57:43 is 34018253.90111395 s in the future tar: ./usr/lib/locale/ar_JO/LC_MESSAGES: time stamp 2026-11-29 03:57:43 is 34018253.90110627 s in the future tar: ./usr/lib/locale/ar_JO: time stamp 2026-11-29 03:57:43 is 34018253.90110031 s in the future tar: ./usr/lib/locale/ar_IQ.utf8/LC_MESSAGES: time stamp 2026-11-29 03:57:43 is 34018253.90109311 s in the future tar: ./usr/lib/locale/ar_IQ.utf8: 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s in the future tar: ./usr/lib/locale/ar_DZ.utf8: time stamp 2026-11-29 03:57:43 is 34018253.90101823 s in the future tar: ./usr/lib/locale/ar_DZ/LC_MESSAGES: time stamp 2026-11-29 03:57:43 is 34018253.90101099 s in the future tar: ./usr/lib/locale/ar_DZ: time stamp 2026-11-29 03:57:43 is 34018253.90100483 s in the future tar: ./usr/lib/locale/ar_BH.utf8/LC_MESSAGES: time stamp 2026-11-29 03:57:43 is 34018253.90099771 s in the future tar: ./usr/lib/locale/ar_BH.utf8: time stamp 2026-11-29 03:57:43 is 34018253.90099135 s in the future tar: ./usr/lib/locale/ar_BH/LC_MESSAGES: time stamp 2026-11-29 03:57:43 is 34018253.90098359 s in the future tar: ./usr/lib/locale/ar_BH: time stamp 2026-11-29 03:57:43 is 34018253.90097747 s in the future tar: ./usr/lib/locale/ar_AE.utf8: time stamp 2026-11-29 03:57:43 is 34018253.90097043 s in the future tar: ./usr/lib/locale/anp_IN: time stamp 2026-11-29 03:57:43 is 34018253.90096395 s in the future tar: ./usr/lib/locale/an_ES.utf8: time stamp 2026-11-29 03:57:43 is 34018253.90095715 s in the future tar: ./usr/lib/locale/am_ET: time stamp 2026-11-29 03:57:43 is 34018253.90095059 s in the future tar: ./usr/lib/locale/ak_GH: time stamp 2026-11-29 03:57:43 is 34018253.90094355 s in the future tar: ./usr/lib/locale/agr_PE: time stamp 2026-11-29 03:57:43 is 34018253.90093743 s in the future tar: ./usr/lib/locale/af_ZA.utf8: time stamp 2026-11-29 03:57:43 is 34018253.90092967 s in the future tar: ./usr/lib/locale/af_ZA: time stamp 2026-11-29 03:57:43 is 34018253.90092283 s in the future tar: ./usr/lib/locale/aa_ET/LC_MESSAGES: time stamp 2026-11-29 03:57:43 is 34018253.90091583 s in the future tar: ./usr/lib/locale/aa_ET: time stamp 2026-11-29 03:57:43 is 34018253.90090987 s in the future tar: ./usr/lib/locale/aa_ER/LC_MESSAGES: time stamp 2026-11-29 03:57:43 is 34018253.90090275 s in the future tar: ./usr/lib/locale/aa_ER: time stamp 2026-11-29 03:57:43 is 34018253.90089639 s in the future tar: ./usr/lib/locale: time stamp 2026-11-29 03:57:43 is 34018253.90089043 s in the future tar: ./usr/lib/aarch64-linux-gnu/perl/cross-config-5.40.1: time stamp 2026-11-29 03:57:34 is 34018244.90088155 s in the future tar: ./usr/lib/aarch64-linux-gnu/perl: time stamp 2026-11-29 03:57:34 is 34018244.90087523 s in the future tar: ./usr/lib/aarch64-linux-gnu: time stamp 2026-12-01 06:31:24 is 34200274.90086935 s in the future tar: ./usr/lib: time stamp 2026-11-29 03:57:35 is 34018245.90086355 s in the future tar: ./usr/include/x86_64-linux-gnux32/asm: time stamp 2026-11-29 03:57:35 is 34018245.90085615 s in the future tar: ./usr/include/x86_64-linux-gnux32: time stamp 2026-11-29 03:57:35 is 34018245.90085003 s in the future tar: ./usr/include/x86_64-linux-gnu/asm: time stamp 2026-11-29 03:57:35 is 34018245.90084323 s in the future tar: ./usr/include/x86_64-linux-gnu: time stamp 2026-11-29 03:57:35 is 34018245.90083747 s in the future tar: ./usr/include/sparc64-linux-gnu/asm: time stamp 2026-11-29 03:57:35 is 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future tar: ./usr/include/powerpc64le-linux-gnu: time stamp 2026-11-29 03:57:35 is 34018245.90076515 s in the future tar: ./usr/include/powerpc64-linux-gnu/asm: time stamp 2026-11-29 03:57:35 is 34018245.90075739 s in the future tar: ./usr/include/powerpc64-linux-gnu: time stamp 2026-11-29 03:57:35 is 34018245.90075155 s in the future tar: ./usr/include/powerpc-linux-gnu/asm: time stamp 2026-11-29 03:57:35 is 34018245.90074411 s in the future tar: ./usr/include/powerpc-linux-gnu: time stamp 2026-11-29 03:57:35 is 34018245.90073835 s in the future tar: ./usr/include/mipsisa64r6el-linux-gnuabi64/asm: time stamp 2026-11-29 03:57:35 is 34018245.90073111 s in the future tar: ./usr/include/mipsisa64r6el-linux-gnuabi64: time stamp 2026-11-29 03:57:35 is 34018245.90072535 s in the future tar: ./usr/include/mipsel-linux-gnu/asm: time stamp 2026-11-29 03:57:35 is 34018245.90071819 s in the future tar: ./usr/include/mipsel-linux-gnu: time stamp 2026-11-29 03:57:35 is 34018245.90071195 s in the future tar: ./usr/include/mips64el-linux-gnuabi64/asm: time stamp 2026-11-29 03:57:35 is 34018245.90070483 s in the future tar: ./usr/include/mips64el-linux-gnuabi64: time stamp 2026-11-29 03:57:35 is 34018245.90069887 s in the future tar: ./usr/include/mips64-linux-gnuabi64/asm: time stamp 2026-11-29 03:57:35 is 34018245.90069187 s in the future tar: ./usr/include/mips64-linux-gnuabi64: time stamp 2026-11-29 03:57:35 is 34018245.90068595 s in the future tar: ./usr/include/mips-linux-gnu/asm: time stamp 2026-11-29 03:57:35 is 34018245.90067787 s in the future tar: ./usr/include/mips-linux-gnu: time stamp 2026-11-29 03:57:35 is 34018245.90067119 s in the future tar: ./usr/include/m68k-linux-gnu/asm: time stamp 2026-11-29 03:57:35 is 34018245.90066335 s in the future tar: ./usr/include/m68k-linux-gnu: time stamp 2026-11-29 03:57:35 is 34018245.90065743 s in the future tar: ./usr/include/loongarch64-linux-gnu/asm: time stamp 2026-11-29 03:57:35 is 34018245.90065055 s in the future tar: ./usr/include/loongarch64-linux-gnu: time stamp 2026-11-29 03:57:35 is 34018245.90064479 s in the future tar: ./usr/include/i386-linux-gnu/asm: time stamp 2026-11-29 03:57:35 is 34018245.90063779 s in the future tar: ./usr/include/i386-linux-gnu: time stamp 2026-11-29 03:57:34 is 34018244.90063183 s in the future tar: ./usr/include/hppa-linux-gnu/asm: time stamp 2026-11-29 03:57:35 is 34018245.90062399 s in the future tar: ./usr/include/hppa-linux-gnu: time stamp 2026-11-29 03:57:34 is 34018244.90061783 s in the future tar: ./usr/include/arm-linux-gnueabihf/asm: time stamp 2026-11-29 03:57:35 is 34018245.90061055 s in the future tar: ./usr/include/arm-linux-gnueabihf: time stamp 2026-11-29 03:57:34 is 34018244.90060463 s in the future tar: ./usr/include/arm-linux-gnueabi/asm: time stamp 2026-11-29 03:57:35 is 34018245.90059727 s in the future tar: ./usr/include/arm-linux-gnueabi: time stamp 2026-11-29 03:57:34 is 34018244.90059135 s in the future tar: ./usr/include/alpha-linux-gnu/asm: time stamp 2026-11-29 03:57:35 is 34018245.90058427 s in the future tar: ./usr/include/alpha-linux-gnu: time stamp 2026-11-29 03:57:34 is 34018244.90057795 s in the future tar: ./usr/include/aarch64-linux-gnu/asm: time stamp 2026-11-29 03:57:35 is 34018245.90057071 s in the future tar: ./usr/include/aarch64-linux-gnu: time stamp 2026-11-29 03:57:34 is 34018244.90056411 s in the future tar: ./usr/include: time stamp 2026-11-29 03:57:35 is 34018245.90055851 s in the future tar: ./usr/bin: time stamp 2026-11-29 12:29:48 is 34048978.90055219 s in the future tar: ./usr: time stamp 2026-11-29 03:57:21 is 34018231.90054671 s in the future tar: ./etc/systemd/system/timers.target.wants: time stamp 2026-11-29 03:57:36 is 34018246.90053323 s in the future tar: ./etc/systemd/system: time stamp 2026-11-29 03:57:22 is 34018232.90052659 s in the future tar: ./etc/alternatives: time stamp 2026-11-29 03:57:43 is 34018253.90051635 s in the future I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [r-bioc-basilisk_1.18.0+ds-1.dsc] I: copying [./r-bioc-basilisk_1.18.0+ds.orig.tar.xz] I: copying [./r-bioc-basilisk_1.18.0+ds-1.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./r-bioc-basilisk_1.18.0+ds-1.dsc: no acceptable signature found dpkg-source: info: extracting r-bioc-basilisk in r-bioc-basilisk-1.18.0+ds dpkg-source: info: unpacking r-bioc-basilisk_1.18.0+ds.orig.tar.xz dpkg-source: info: unpacking r-bioc-basilisk_1.18.0+ds-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying skip_failing_test.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3485943/tmp/hooks/D01_modify_environment starting debug: Running on codethink03-arm64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Oct 30 20:26 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/3485943/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/3485943/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") BASH_VERSION='5.3.3(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=arm64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DIRSTACK=() DISTRIBUTION=experimental EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=aarch64 HOST_ARCH=arm64 IFS=' ' INVOCATION_ID=e1b96b11ae1c4dc6802bd1da85d47601 LANG=C LANGUAGE=nl_BE:nl LC_ALL=C MACHTYPE=aarch64-unknown-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=3485943 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.RRJcXJQJ/pbuilderrc_VdRM --distribution experimental --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/experimental-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.RRJcXJQJ/b2 --logfile b2/build.log r-bioc-basilisk_1.18.0+ds-1.dsc' SUDO_GID=109 SUDO_HOME=/var/lib/jenkins SUDO_UID=104 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://192.168.101.4:3128 I: uname -a Linux i-capture-the-hostname 6.12.48+deb13-cloud-arm64 #1 SMP Debian 6.12.48-1 (2025-09-20) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3485943/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-cran-reticulate, r-bioc-dir.expiry, r-bioc-basilisk.utils (>= 1.15.1), architecture-is-64-bit dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19964 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-r; however: Package dh-r is not installed. pbuilder-satisfydepends-dummy depends on r-base-dev; however: Package r-base-dev is not installed. pbuilder-satisfydepends-dummy depends on r-cran-reticulate; however: Package r-cran-reticulate is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-dir.expiry; however: Package r-bioc-dir.expiry is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-basilisk.utils (>= 1.15.1); however: Package r-bioc-basilisk.utils is not installed. pbuilder-satisfydepends-dummy depends on architecture-is-64-bit; however: Package architecture-is-64-bit is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: architecture-properties{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} dctrl-tools{a} debhelper{a} dh-autoreconf{a} dh-r{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} gettext{a} gettext-base{a} gfortran{a} gfortran-15{a} gfortran-15-aarch64-linux-gnu{a} gfortran-aarch64-linux-gnu{a} groff-base{a} icu-devtools{a} intltool-debian{a} libalgorithm-c3-perl{a} libarchive-zip-perl{a} libb-hooks-endofscope-perl{a} libb-hooks-op-check-perl{a} libblas-dev{a} libblas3{a} libbrotli1{a} libbz2-dev{a} libcairo2{a} libclass-c3-perl{a} libclass-load-perl{a} libclass-load-xs-perl{a} libclone-perl{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4t64{a} libdata-optlist-perl{a} libdatrie1{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libdevel-callchecker-perl{a} libdevel-globaldestruction-perl{a} libdevel-overloadinfo-perl{a} libdevel-stacktrace-perl{a} libdist-checkconflicts-perl{a} libdynaloader-functions-perl{a} libelf1t64{a} libencode-locale-perl{a} libeval-closure-perl{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran-15-dev{a} libgfortran5{a} libglib2.0-0t64{a} libgnutls30t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhttp-date-perl{a} libhttp-message-perl{a} libice6{a} libicu-dev{a} libicu76{a} libidn2-0{a} libio-html-perl{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} libldap2{a} liblerc4{a} liblwp-mediatypes-perl{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libmodule-implementation-perl{a} libmodule-runtime-conflicts-perl{a} libmodule-runtime-perl{a} libmoose-perl{a} libmro-compat-perl{a} libnamespace-clean-perl{a} libncurses-dev{a} libncurses6{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libngtcp2-crypto-ossl0{a} libp11-kit0{a} libpackage-deprecationmanager-perl{a} libpackage-stash-perl{a} libpackage-stash-xs-perl{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper2{a} libparams-classify-perl{a} libparams-util-perl{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpipeline1{a} libpixman-1-0{a} libpkgconf3{a} libpng-dev{a} libpng16-16t64{a} libproc2-0{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline-dev{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libsm6{a} libssh2-1t64{a} libsub-exporter-perl{a} libsub-exporter-progressive-perl{a} libsub-identify-perl{a} libsub-install-perl{a} libsub-name-perl{a} libswitch-perl{a} libtasn1-6{a} libtcl8.6{a} libtext-charwidth-perl{a} libtext-wrapi18n-perl{a} libthai-data{a} libthai0{a} libtiff6{a} libtimedate-perl{a} libtirpc-common{a} libtirpc-dev{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} libunistring5{a} liburi-perl{a} libvariable-magic-perl{a} libwebp7{a} libwww-curl-perl{a} libwww-curl-simple-perl{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2-16{a} libxmuu1{a} libxrender1{a} libxss1{a} libxt6t64{a} libzstd-dev{a} littler{a} m4{a} man-db{a} media-types{a} netbase{a} openssl{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} python3{a} python3-minimal{a} python3.13{a} python3.13-minimal{a} r-base-core{a} r-base-dev{a} r-bioc-basilisk.utils{a} r-bioc-biocgenerics{a} r-bioc-dir.expiry{a} r-cran-filelock{a} r-cran-here{a} r-cran-jsonlite{a} r-cran-lattice{a} r-cran-littler{a} r-cran-matrix{a} r-cran-pkgkitten{a} r-cran-png{a} r-cran-rappdirs{a} r-cran-rcpp{a} r-cran-rcpptoml{a} r-cran-reticulate{a} r-cran-rlang{a} r-cran-rprojroot{a} r-cran-withr{a} readline-common{a} sensible-utils{a} tzdata{a} ucf{a} unzip{a} x11-common{a} xauth{a} xdg-utils{a} zip{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc cme curl devscripts git-buildpackage krb5-locales libarchive-cpio-perl libclass-c3-xs-perl libdevel-lexalias-perl libdevel-partialdump-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libio-compress-brotli-perl libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools libsasl2-modules libx11-protocol-perl linux-sysctl-defaults lynx psmisc publicsuffix r-cran-callr r-cran-cli r-cran-covr r-cran-crayon r-cran-dbi r-cran-fs r-cran-glue r-cran-httr r-cran-knitr r-cran-lifecycle r-cran-magrittr r-cran-pillar r-cran-r.rsp r-cran-rmarkdown r-cran-rsqlite r-cran-sf r-cran-testthat r-cran-tibble r-cran-tinytest r-cran-usethis r-cran-vctrs r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 226 newly installed, 0 to remove and 0 not upgraded. Need to get 122 MB of archives. After unpacking 388 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main arm64 libexpat1 arm64 2.7.3-1 [96.5 kB] Get: 2 http://deb.debian.org/debian unstable/main arm64 libpython3.13-minimal arm64 3.13.9-1 [858 kB] Get: 3 http://deb.debian.org/debian unstable/main arm64 python3.13-minimal arm64 3.13.9-1 [2061 kB] Get: 4 http://deb.debian.org/debian unstable/main arm64 python3-minimal arm64 3.13.7-1 [27.2 kB] Get: 5 http://deb.debian.org/debian unstable/main arm64 media-types all 14.0.0 [30.8 kB] Get: 6 http://deb.debian.org/debian unstable/main arm64 netbase all 6.5 [12.4 kB] Get: 7 http://deb.debian.org/debian unstable/main arm64 tzdata all 2025b-5 [260 kB] Get: 8 http://deb.debian.org/debian unstable/main arm64 libffi8 arm64 3.5.2-2 [21.5 kB] Get: 9 http://deb.debian.org/debian unstable/main arm64 readline-common all 8.3-3 [74.8 kB] Get: 10 http://deb.debian.org/debian unstable/main arm64 libreadline8t64 arm64 8.3-3 [169 kB] Get: 11 http://deb.debian.org/debian unstable/main arm64 libpython3.13-stdlib arm64 3.13.9-1 [1900 kB] Get: 12 http://deb.debian.org/debian unstable/main arm64 python3.13 arm64 3.13.9-1 [764 kB] Get: 13 http://deb.debian.org/debian unstable/main arm64 libpython3-stdlib arm64 3.13.7-1 [10.2 kB] Get: 14 http://deb.debian.org/debian unstable/main arm64 python3 arm64 3.13.7-1 [28.3 kB] Get: 15 http://deb.debian.org/debian unstable/main arm64 libproc2-0 arm64 2:4.0.4-9 [62.8 kB] Get: 16 http://deb.debian.org/debian unstable/main arm64 procps arm64 2:4.0.4-9 [871 kB] Get: 17 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.26 [27.0 kB] Get: 18 http://deb.debian.org/debian unstable/main arm64 openssl arm64 3.5.4-1 [1457 kB] Get: 19 http://deb.debian.org/debian unstable/main arm64 ca-certificates all 20250419 [162 kB] Get: 20 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.46-5 [338 kB] Get: 21 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.46-5 [103 kB] Get: 22 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.46-5 [43.7 kB] Get: 23 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.23.1-2+b1 [241 kB] Get: 24 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-2 [69.0 kB] Get: 25 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-9 [1130 kB] Get: 26 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.41.2-4 [97.3 kB] Get: 27 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 28 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.1-1 [1453 kB] Get: 29 http://deb.debian.org/debian unstable/main arm64 libtext-charwidth-perl arm64 0.04-11+b4 [9652 B] Get: 30 http://deb.debian.org/debian unstable/main arm64 libtext-wrapi18n-perl all 0.06-10 [8808 B] Get: 31 http://deb.debian.org/debian unstable/main arm64 ucf all 3.0052 [43.3 kB] Get: 32 http://deb.debian.org/debian unstable/main arm64 architecture-properties arm64 0.2.6 [2336 B] Get: 33 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.20-2 [315 kB] Get: 34 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3.1 [494 kB] Get: 35 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20240727.1 [60.2 kB] Get: 36 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.18.1-2 [877 kB] Get: 37 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.23.1-2 [770 kB] Get: 38 http://deb.debian.org/debian unstable/main arm64 dctrl-tools arm64 2.24-3+b1 [125 kB] Get: 39 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.28 [92.4 kB] Get: 40 http://deb.debian.org/debian unstable/main arm64 libtool all 2.5.4-7 [540 kB] Get: 41 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 21 [12.2 kB] Get: 42 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 43 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 44 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 45 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.194-1 [184 kB] Get: 46 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.16-2 [100 kB] Get: 47 http://deb.debian.org/debian unstable/main arm64 libunistring5 arm64 1.3-2 [453 kB] Get: 48 http://deb.debian.org/debian unstable/main arm64 libxml2-16 arm64 2.15.1+dfsg-0.3 [591 kB] Get: 49 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.23.1-2+b1 [1612 kB] Get: 50 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 51 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 52 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.28 [941 kB] Get: 53 http://deb.debian.org/debian unstable/main arm64 zip arm64 3.0-15 [227 kB] Get: 54 http://deb.debian.org/debian unstable/main arm64 unzip arm64 6.0-29 [163 kB] Get: 55 http://deb.debian.org/debian unstable/main arm64 libpaper2 arm64 2.2.5-0.3+b2 [16.6 kB] Get: 56 http://deb.debian.org/debian unstable/main arm64 libpaper-utils arm64 2.2.5-0.3+b2 [16.4 kB] Get: 57 http://deb.debian.org/debian unstable/main arm64 xdg-utils all 1.2.1-2 [75.8 kB] Get: 58 http://deb.debian.org/debian unstable/main arm64 libblas3 arm64 3.12.1-7 [135 kB] Get: 59 http://deb.debian.org/debian unstable/main arm64 libbrotli1 arm64 1.1.0-2+b7 [308 kB] Get: 60 http://deb.debian.org/debian unstable/main arm64 libpng16-16t64 arm64 1.6.50-1 [275 kB] Get: 61 http://deb.debian.org/debian unstable/main arm64 libfreetype6 arm64 2.13.3+dfsg-1 [422 kB] Get: 62 http://deb.debian.org/debian unstable/main arm64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 63 http://deb.debian.org/debian unstable/main arm64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 64 http://deb.debian.org/debian unstable/main arm64 fontconfig-config arm64 2.15.0-2.4 [318 kB] Get: 65 http://deb.debian.org/debian unstable/main arm64 libfontconfig1 arm64 2.15.0-2.4 [387 kB] Get: 66 http://deb.debian.org/debian unstable/main arm64 libpixman-1-0 arm64 0.46.4-1 [174 kB] Get: 67 http://deb.debian.org/debian unstable/main arm64 libxau6 arm64 1:1.0.11-1 [20.6 kB] Get: 68 http://deb.debian.org/debian unstable/main arm64 libxdmcp6 arm64 1:1.1.5-1 [27.8 kB] Get: 69 http://deb.debian.org/debian unstable/main arm64 libxcb1 arm64 1.17.0-2+b1 [143 kB] Get: 70 http://deb.debian.org/debian unstable/main arm64 libx11-data all 2:1.8.12-1 [343 kB] Get: 71 http://deb.debian.org/debian unstable/main arm64 libx11-6 arm64 2:1.8.12-1 [795 kB] Get: 72 http://deb.debian.org/debian unstable/main arm64 libxcb-render0 arm64 1.17.0-2+b1 [115 kB] Get: 73 http://deb.debian.org/debian unstable/main arm64 libxcb-shm0 arm64 1.17.0-2+b1 [105 kB] Get: 74 http://deb.debian.org/debian unstable/main arm64 libxext6 arm64 2:1.3.4-1+b3 [49.2 kB] Get: 75 http://deb.debian.org/debian unstable/main arm64 libxrender1 arm64 1:0.9.12-1 [27.0 kB] Get: 76 http://deb.debian.org/debian unstable/main arm64 libcairo2 arm64 1.18.4-1+b1 [483 kB] Get: 77 http://deb.debian.org/debian unstable/main arm64 libnghttp3-9 arm64 1.12.0-1 [63.6 kB] Get: 78 http://deb.debian.org/debian unstable/main arm64 libngtcp2-16 arm64 1.16.0-1 [123 kB] Get: 79 http://deb.debian.org/debian unstable/main arm64 libkrb5support0 arm64 1.21.3-5 [32.4 kB] Get: 80 http://deb.debian.org/debian unstable/main arm64 libcom-err2 arm64 1.47.2-3+b3 [24.9 kB] Get: 81 http://deb.debian.org/debian unstable/main arm64 libk5crypto3 arm64 1.21.3-5 [81.2 kB] Get: 82 http://deb.debian.org/debian unstable/main arm64 libkeyutils1 arm64 1.6.3-6 [9716 B] Get: 83 http://deb.debian.org/debian unstable/main arm64 libkrb5-3 arm64 1.21.3-5 [308 kB] Get: 84 http://deb.debian.org/debian unstable/main arm64 libgssapi-krb5-2 arm64 1.21.3-5 [127 kB] Get: 85 http://deb.debian.org/debian unstable/main arm64 libidn2-0 arm64 2.3.8-4 [108 kB] Get: 86 http://deb.debian.org/debian unstable/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-10 [19.8 kB] Get: 87 http://deb.debian.org/debian unstable/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-10 [55.0 kB] Get: 88 http://deb.debian.org/debian unstable/main arm64 libldap2 arm64 2.6.10+dfsg-1 [179 kB] Get: 89 http://deb.debian.org/debian unstable/main arm64 libnghttp2-14 arm64 1.64.0-1.1+b1 [71.7 kB] Get: 90 http://deb.debian.org/debian unstable/main arm64 libngtcp2-crypto-ossl0 arm64 1.16.0-1 [25.7 kB] Get: 91 http://deb.debian.org/debian unstable/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB] Get: 92 http://deb.debian.org/debian unstable/main arm64 libp11-kit0 arm64 0.25.9-2 [420 kB] Get: 93 http://deb.debian.org/debian unstable/main arm64 libtasn1-6 arm64 4.20.0-2 [47.3 kB] Get: 94 http://deb.debian.org/debian unstable/main arm64 libgnutls30t64 arm64 3.8.10-3 [1384 kB] Get: 95 http://deb.debian.org/debian unstable/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-3 [56.3 kB] Get: 96 http://deb.debian.org/debian unstable/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Get: 97 http://deb.debian.org/debian unstable/main arm64 libcurl4t64 arm64 8.17.0~rc3-1 [370 kB] Get: 98 http://deb.debian.org/debian unstable/main arm64 libdeflate0 arm64 1.23-2 [42.4 kB] Get: 99 http://deb.debian.org/debian unstable/main arm64 libglib2.0-0t64 arm64 2.86.1-1 [1436 kB] Get: 100 http://deb.debian.org/debian unstable/main arm64 libicu76 arm64 76.1-4 [9524 kB] Get: 101 http://deb.debian.org/debian unstable/main arm64 libjpeg62-turbo arm64 1:2.1.5-4 [173 kB] Get: 102 http://deb.debian.org/debian unstable/main arm64 libgfortran5 arm64 15.2.0-7 [371 kB] Get: 103 http://deb.debian.org/debian unstable/main arm64 liblapack3 arm64 3.12.1-7 [1846 kB] Get: 104 http://deb.debian.org/debian unstable/main arm64 fontconfig arm64 2.15.0-2.4 [463 kB] Get: 105 http://deb.debian.org/debian unstable/main arm64 libfribidi0 arm64 1.0.16-3 [26.5 kB] Get: 106 http://deb.debian.org/debian unstable/main arm64 libgraphite2-3 arm64 1.3.14-11 [70.8 kB] Get: 107 http://deb.debian.org/debian unstable/main arm64 libharfbuzz0b arm64 12.1.0-1 [486 kB] Get: 108 http://deb.debian.org/debian unstable/main arm64 libthai-data all 0.1.29-2 [168 kB] Get: 109 http://deb.debian.org/debian unstable/main arm64 libdatrie1 arm64 0.2.13-4 [37.4 kB] Get: 110 http://deb.debian.org/debian unstable/main arm64 libthai0 arm64 0.1.29-2+b1 [48.4 kB] Get: 111 http://deb.debian.org/debian unstable/main arm64 libpango-1.0-0 arm64 1.56.3-2 [222 kB] Get: 112 http://deb.debian.org/debian unstable/main arm64 libpangoft2-1.0-0 arm64 1.56.3-2 [56.5 kB] Get: 113 http://deb.debian.org/debian unstable/main arm64 libpangocairo-1.0-0 arm64 1.56.3-2 [35.3 kB] Get: 114 http://deb.debian.org/debian unstable/main arm64 libtcl8.6 arm64 8.6.17+dfsg-1 [982 kB] Get: 115 http://deb.debian.org/debian unstable/main arm64 libjbig0 arm64 2.1-6.1+b2 [30.4 kB] Get: 116 http://deb.debian.org/debian unstable/main arm64 liblerc4 arm64 4.0.0+ds-5 [146 kB] Get: 117 http://deb.debian.org/debian unstable/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [114 kB] Get: 118 http://deb.debian.org/debian unstable/main arm64 libwebp7 arm64 1.5.0-0.1 [271 kB] Get: 119 http://deb.debian.org/debian unstable/main arm64 libtiff6 arm64 4.7.1-1 [334 kB] Get: 120 http://deb.debian.org/debian unstable/main arm64 libtirpc-common all 1.3.6+ds-1 [11.0 kB] Get: 121 http://deb.debian.org/debian unstable/main arm64 libtirpc3t64 arm64 1.3.6+ds-1 [79.1 kB] Get: 122 http://deb.debian.org/debian unstable/main arm64 libxft2 arm64 2.3.6-1+b4 [51.6 kB] Get: 123 http://deb.debian.org/debian unstable/main arm64 x11-common all 1:7.7+26 [217 kB] Get: 124 http://deb.debian.org/debian unstable/main arm64 libxss1 arm64 1:1.2.3-1+b3 [17.1 kB] Get: 125 http://deb.debian.org/debian unstable/main arm64 libtk8.6 arm64 8.6.17-1 [740 kB] Get: 126 http://deb.debian.org/debian unstable/main arm64 libice6 arm64 2:1.1.1-1 [62.1 kB] Get: 127 http://deb.debian.org/debian unstable/main arm64 libsm6 arm64 2:1.2.6-1 [36.4 kB] Get: 128 http://deb.debian.org/debian unstable/main arm64 libxt6t64 arm64 1:1.2.1-1.3 [182 kB] Get: 129 http://deb.debian.org/debian unstable/main arm64 r-base-core arm64 4.5.1-1 [28.4 MB] Get: 130 http://deb.debian.org/debian unstable/main arm64 libgfortran-15-dev arm64 15.2.0-7 [411 kB] Get: 131 http://deb.debian.org/debian unstable/main arm64 gfortran-15-aarch64-linux-gnu arm64 15.2.0-7 [10.8 MB] Get: 132 http://deb.debian.org/debian unstable/main arm64 gfortran-15 arm64 15.2.0-7 [18.0 kB] Get: 133 http://deb.debian.org/debian unstable/main arm64 gfortran-aarch64-linux-gnu arm64 4:15.2.0-4 [1280 B] Get: 134 http://deb.debian.org/debian unstable/main arm64 gfortran arm64 4:15.2.0-4 [1428 B] Get: 135 http://deb.debian.org/debian unstable/main arm64 libblas-dev arm64 3.12.1-7 [145 kB] Get: 136 http://deb.debian.org/debian unstable/main arm64 liblapack-dev arm64 3.12.1-7 [3829 kB] Get: 137 http://deb.debian.org/debian unstable/main arm64 libncurses6 arm64 6.5+20250216-2 [96.1 kB] Get: 138 http://deb.debian.org/debian unstable/main arm64 libncurses-dev arm64 6.5+20250216-2 [340 kB] Get: 139 http://deb.debian.org/debian unstable/main arm64 libreadline-dev arm64 8.3-3 [163 kB] Get: 140 http://deb.debian.org/debian unstable/main arm64 libjpeg62-turbo-dev arm64 1:2.1.5-4 [293 kB] Get: 141 http://deb.debian.org/debian unstable/main arm64 libjpeg-dev arm64 1:2.1.5-4 [72.2 kB] Get: 142 http://deb.debian.org/debian unstable/main arm64 libpcre2-16-0 arm64 10.46-1 [247 kB] Get: 143 http://deb.debian.org/debian unstable/main arm64 libpcre2-32-0 arm64 10.46-1 [238 kB] Get: 144 http://deb.debian.org/debian unstable/main arm64 libpcre2-posix3 arm64 10.46-1 [64.1 kB] Get: 145 http://deb.debian.org/debian unstable/main arm64 libpcre2-dev arm64 10.46-1 [750 kB] Get: 146 http://deb.debian.org/debian unstable/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Get: 147 http://deb.debian.org/debian unstable/main arm64 libpng-dev arm64 1.6.50-1 [361 kB] Get: 148 http://deb.debian.org/debian unstable/main arm64 libbz2-dev arm64 1.0.8-6 [31.9 kB] Get: 149 http://deb.debian.org/debian unstable/main arm64 liblzma-dev arm64 5.8.1-2 [344 kB] Get: 150 http://deb.debian.org/debian unstable/main arm64 icu-devtools arm64 76.1-4 [200 kB] Get: 151 http://deb.debian.org/debian unstable/main arm64 libicu-dev arm64 76.1-4 [10.6 MB] Get: 152 http://deb.debian.org/debian unstable/main arm64 libxmuu1 arm64 2:1.1.3-3+b4 [22.0 kB] Get: 153 http://deb.debian.org/debian unstable/main arm64 xauth arm64 1:1.1.2-1.1 [35.4 kB] Get: 154 http://deb.debian.org/debian unstable/main arm64 libpkgconf3 arm64 1.8.1-4 [35.3 kB] Get: 155 http://deb.debian.org/debian unstable/main arm64 pkgconf-bin arm64 1.8.1-4 [29.6 kB] Get: 156 http://deb.debian.org/debian unstable/main arm64 pkgconf arm64 1.8.1-4 [26.1 kB] Get: 157 http://deb.debian.org/debian unstable/main arm64 libtirpc-dev arm64 1.3.6+ds-1 [192 kB] Get: 158 http://deb.debian.org/debian unstable/main arm64 libdeflate-dev arm64 1.23-2 [51.3 kB] Get: 159 http://deb.debian.org/debian unstable/main arm64 libzstd-dev arm64 1.5.7+dfsg-2 [330 kB] Get: 160 http://deb.debian.org/debian unstable/main arm64 r-base-dev all 4.5.1-1 [4360 B] Get: 161 http://deb.debian.org/debian unstable/main arm64 libfile-which-perl all 1.27-2 [15.1 kB] Get: 162 http://deb.debian.org/debian unstable/main arm64 libswitch-perl all 2.17-3 [20.3 kB] Get: 163 http://deb.debian.org/debian unstable/main arm64 libclone-perl arm64 0.47-1+b1 [13.7 kB] Get: 164 http://deb.debian.org/debian unstable/main arm64 libencode-locale-perl all 1.05-3 [12.9 kB] Get: 165 http://deb.debian.org/debian unstable/main arm64 libtimedate-perl all 2.3300-2 [39.3 kB] Get: 166 http://deb.debian.org/debian unstable/main arm64 libhttp-date-perl all 6.06-1 [10.7 kB] Get: 167 http://deb.debian.org/debian unstable/main arm64 libio-html-perl all 1.004-3 [16.2 kB] Get: 168 http://deb.debian.org/debian unstable/main arm64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get: 169 http://deb.debian.org/debian unstable/main arm64 liburi-perl all 5.34-2 [111 kB] Get: 170 http://deb.debian.org/debian unstable/main arm64 libhttp-message-perl all 7.01-1 [80.0 kB] Get: 171 http://deb.debian.org/debian unstable/main arm64 libparams-util-perl arm64 1.102-3+b1 [23.7 kB] Get: 172 http://deb.debian.org/debian unstable/main arm64 libsub-install-perl all 0.929-1 [10.5 kB] Get: 173 http://deb.debian.org/debian unstable/main arm64 libdata-optlist-perl all 0.114-1 [10.6 kB] Get: 174 http://deb.debian.org/debian unstable/main arm64 libb-hooks-op-check-perl arm64 0.22-3+b2 [10.6 kB] Get: 175 http://deb.debian.org/debian unstable/main arm64 libdynaloader-functions-perl all 0.004-2 [12.2 kB] Get: 176 http://deb.debian.org/debian unstable/main arm64 libdevel-callchecker-perl arm64 0.009-2 [15.7 kB] Get: 177 http://deb.debian.org/debian unstable/main arm64 libparams-classify-perl arm64 0.015-2+b4 [22.3 kB] Get: 178 http://deb.debian.org/debian unstable/main arm64 libmodule-runtime-perl all 0.018-1 [17.8 kB] Get: 179 http://deb.debian.org/debian unstable/main arm64 libtry-tiny-perl all 0.32-1 [22.9 kB] Get: 180 http://deb.debian.org/debian unstable/main arm64 libmodule-implementation-perl all 0.09-2 [12.6 kB] Get: 181 http://deb.debian.org/debian unstable/main arm64 libpackage-stash-perl all 0.40-1 [22.0 kB] Get: 182 http://deb.debian.org/debian unstable/main arm64 libclass-load-perl all 0.25-2 [15.3 kB] Get: 183 http://deb.debian.org/debian unstable/main arm64 libclass-load-xs-perl arm64 0.10-2+b4 [14.3 kB] Get: 184 http://deb.debian.org/debian unstable/main arm64 libsub-exporter-progressive-perl all 0.001013-3 [7496 B] Get: 185 http://deb.debian.org/debian unstable/main arm64 libdevel-globaldestruction-perl all 0.14-4 [7144 B] Get: 186 http://deb.debian.org/debian unstable/main arm64 libalgorithm-c3-perl all 0.11-2 [10.8 kB] Get: 187 http://deb.debian.org/debian unstable/main arm64 libclass-c3-perl all 0.35-2 [21.0 kB] Get: 188 http://deb.debian.org/debian unstable/main arm64 libmro-compat-perl all 0.15-2 [11.8 kB] Get: 189 http://deb.debian.org/debian unstable/main arm64 libdevel-overloadinfo-perl all 0.008-1 [7748 B] Get: 190 http://deb.debian.org/debian unstable/main arm64 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB] Get: 191 http://deb.debian.org/debian unstable/main arm64 libsub-exporter-perl all 0.990-1 [50.6 kB] Get: 192 http://deb.debian.org/debian unstable/main arm64 libeval-closure-perl all 0.14-3 [11.2 kB] Get: 193 http://deb.debian.org/debian unstable/main arm64 libdist-checkconflicts-perl all 0.11-2 [10.5 kB] Get: 194 http://deb.debian.org/debian unstable/main arm64 libmodule-runtime-conflicts-perl all 0.003-2 [7356 B] Get: 195 http://deb.debian.org/debian unstable/main arm64 libpackage-deprecationmanager-perl all 0.18-1 [17.6 kB] Get: 196 http://deb.debian.org/debian unstable/main arm64 libpackage-stash-xs-perl arm64 0.30-1+b4 [19.0 kB] Get: 197 http://deb.debian.org/debian unstable/main arm64 libmoose-perl arm64 2.4000-1 [766 kB] Get: 198 http://deb.debian.org/debian unstable/main arm64 libvariable-magic-perl arm64 0.64-1+b1 [43.9 kB] Get: 199 http://deb.debian.org/debian unstable/main arm64 libb-hooks-endofscope-perl all 0.28-2 [17.6 kB] Get: 200 http://deb.debian.org/debian unstable/main arm64 libsub-identify-perl arm64 0.14-3+b3 [11.2 kB] Get: 201 http://deb.debian.org/debian unstable/main arm64 libsub-name-perl arm64 0.28-1 [12.1 kB] Get: 202 http://deb.debian.org/debian unstable/main arm64 libnamespace-clean-perl all 0.27-2 [17.8 kB] Get: 203 http://deb.debian.org/debian unstable/main arm64 libngtcp2-crypto-gnutls8 arm64 1.16.0-1 [23.8 kB] Get: 204 http://deb.debian.org/debian unstable/main arm64 libcurl3t64-gnutls arm64 8.17.0~rc3-1 [362 kB] Get: 205 http://deb.debian.org/debian unstable/main arm64 libwww-curl-perl arm64 4.17-12 [57.7 kB] Get: 206 http://deb.debian.org/debian unstable/main arm64 libwww-curl-simple-perl all 0.100191-3 [12.6 kB] Get: 207 http://deb.debian.org/debian unstable/main arm64 dh-r all 20250812 [42.6 kB] Get: 208 http://deb.debian.org/debian unstable/main arm64 r-cran-littler arm64 0.3.21-2 [92.2 kB] Get: 209 http://deb.debian.org/debian unstable/main arm64 littler all 0.3.21-2 [16.9 kB] Get: 210 http://deb.debian.org/debian unstable/main arm64 r-bioc-biocgenerics all 0.52.0-2 [627 kB] Get: 211 http://deb.debian.org/debian unstable/main arm64 r-cran-filelock arm64 1.0.3-1+b1 [28.1 kB] Get: 212 http://deb.debian.org/debian unstable/main arm64 r-bioc-dir.expiry all 1.14.0+ds-2 [32.3 kB] Get: 213 http://deb.debian.org/debian unstable/main arm64 r-bioc-basilisk.utils all 1.18.0+ds-2 [78.4 kB] Get: 214 http://deb.debian.org/debian unstable/main arm64 r-cran-rprojroot all 2.0.4-2 [125 kB] Get: 215 http://deb.debian.org/debian unstable/main arm64 r-cran-here all 1.0.1-2 [48.7 kB] Get: 216 http://deb.debian.org/debian unstable/main arm64 r-cran-jsonlite arm64 1.9.1+dfsg-1 [443 kB] Get: 217 http://deb.debian.org/debian unstable/main arm64 r-cran-lattice arm64 0.22-7-1 [1418 kB] Get: 218 http://deb.debian.org/debian unstable/main arm64 r-cran-matrix arm64 1.7-4-1 [4031 kB] Get: 219 http://deb.debian.org/debian unstable/main arm64 r-cran-pkgkitten all 0.2.4-1 [29.1 kB] Get: 220 http://deb.debian.org/debian unstable/main arm64 r-cran-png arm64 0.1-8-1+b2 [41.3 kB] Get: 221 http://deb.debian.org/debian unstable/main arm64 r-cran-rappdirs arm64 0.3.3-1+b1 [49.3 kB] Get: 222 http://deb.debian.org/debian unstable/main arm64 r-cran-rcpp arm64 1.1.0-1 [2096 kB] Get: 223 http://deb.debian.org/debian unstable/main arm64 r-cran-rcpptoml arm64 0.2.3+dfsg-1 [106 kB] Get: 224 http://deb.debian.org/debian unstable/main arm64 r-cran-rlang arm64 1.1.5-3 [1703 kB] Get: 225 http://deb.debian.org/debian unstable/main arm64 r-cran-withr all 3.0.2+dfsg-1 [226 kB] Get: 226 http://deb.debian.org/debian unstable/main arm64 r-cran-reticulate arm64 1.41.0.1+dfsg-1 [1546 kB] Fetched 122 MB in 1s (204 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19964 files and directories currently installed.) Preparing to unpack .../libexpat1_2.7.3-1_arm64.deb ... Unpacking libexpat1:arm64 (2.7.3-1) ... Selecting previously unselected package libpython3.13-minimal:arm64. Preparing to unpack .../libpython3.13-minimal_3.13.9-1_arm64.deb ... Unpacking libpython3.13-minimal:arm64 (3.13.9-1) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../python3.13-minimal_3.13.9-1_arm64.deb ... Unpacking python3.13-minimal (3.13.9-1) ... Setting up libpython3.13-minimal:arm64 (3.13.9-1) ... Setting up libexpat1:arm64 (2.7.3-1) ... Setting up python3.13-minimal (3.13.9-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20298 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.13.7-1_arm64.deb ... Unpacking python3-minimal (3.13.7-1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_14.0.0_all.deb ... Unpacking media-types (14.0.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.5_all.deb ... Unpacking netbase (6.5) ... Selecting previously unselected package tzdata. Preparing to unpack .../3-tzdata_2025b-5_all.deb ... Unpacking tzdata (2025b-5) ... Selecting previously unselected package libffi8:arm64. Preparing to unpack .../4-libffi8_3.5.2-2_arm64.deb ... Unpacking libffi8:arm64 (3.5.2-2) ... Selecting previously unselected package readline-common. Preparing to unpack .../5-readline-common_8.3-3_all.deb ... Unpacking readline-common (8.3-3) ... Selecting previously unselected package libreadline8t64:arm64. Preparing to unpack .../6-libreadline8t64_8.3-3_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.3-3) ... Selecting previously unselected package libpython3.13-stdlib:arm64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.9-1_arm64.deb ... Unpacking libpython3.13-stdlib:arm64 (3.13.9-1) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.9-1_arm64.deb ... Unpacking python3.13 (3.13.9-1) ... 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Selecting previously unselected package libtirpc3t64:arm64. Preparing to unpack .../107-libtirpc3t64_1.3.6+ds-1_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:arm64 (1.3.6+ds-1) ... Selecting previously unselected package libxft2:arm64. Preparing to unpack .../108-libxft2_2.3.6-1+b4_arm64.deb ... Unpacking libxft2:arm64 (2.3.6-1+b4) ... Selecting previously unselected package x11-common. Preparing to unpack .../109-x11-common_1%3a7.7+26_all.deb ... Unpacking x11-common (1:7.7+26) ... Selecting previously unselected package libxss1:arm64. Preparing to unpack .../110-libxss1_1%3a1.2.3-1+b3_arm64.deb ... Unpacking libxss1:arm64 (1:1.2.3-1+b3) ... Selecting previously unselected package libtk8.6:arm64. 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Unpacking r-cran-withr (3.0.2+dfsg-1) ... Selecting previously unselected package r-cran-reticulate. Preparing to unpack .../212-r-cran-reticulate_1.41.0.1+dfsg-1_arm64.deb ... Unpacking r-cran-reticulate (1.41.0.1+dfsg-1) ... Setting up media-types (14.0.0) ... Setting up libpipeline1:arm64 (1.5.8-1) ... Setting up libgraphite2-3:arm64 (1.3.14-11) ... Setting up libpixman-1-0:arm64 (0.46.4-1) ... Setting up libtext-charwidth-perl:arm64 (0.04-11+b4) ... Setting up libsharpyuv0:arm64 (1.5.0-0.1) ... Setting up libfile-which-perl (1.27-2) ... Setting up libxau6:arm64 (1:1.0.11-1) ... Setting up libxdmcp6:arm64 (1:1.1.5-1) ... Setting up libkeyutils1:arm64 (1.6.3-6) ... Setting up libxcb1:arm64 (1.17.0-2+b1) ... Setting up liblerc4:arm64 (4.0.0+ds-5) ... Setting up libzstd-dev:arm64 (1.5.7+dfsg-2) ... Setting up bsdextrautils (2.41.2-4) ... Setting up libdynaloader-functions-perl (0.004-2) ... Setting up libdatrie1:arm64 (0.2.13-4) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libxcb-render0:arm64 (1.17.0-2+b1) ... Setting up libclone-perl:arm64 (0.47-1+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libsub-identify-perl (0.14-3+b3) ... Setting up architecture-properties:arm64 (0.2.6) ... Setting up libxml2-16:arm64 (2.15.1+dfsg-0.3) ... Setting up libtirpc-common (1.3.6+ds-1) ... Setting up unzip (6.0-29) ... Setting up libdebhelper-perl (13.28) ... Setting up libbrotli1:arm64 (1.1.0-2+b7) ... Setting up liblwp-mediatypes-perl (6.04-2) ... Setting up libmagic1t64:arm64 (1:5.46-5) ... Setting up x11-common (1:7.7+26) ... invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libtry-tiny-perl (0.32-1) ... Setting up libnghttp2-14:arm64 (1.64.0-1.1+b1) ... Setting up libdeflate0:arm64 (1.23-2) ... Setting up gettext-base (0.23.1-2+b1) ... Setting up m4 (1.4.20-2) ... Setting up libencode-locale-perl (1.05-3) ... Setting up libxcb-shm0:arm64 (1.17.0-2+b1) ... Setting up libcom-err2:arm64 (1.47.2-3+b3) ... Setting up file (1:5.46-5) ... Setting up libtext-wrapi18n-perl (0.06-10) ... Setting up libjbig0:arm64 (2.1-6.1+b2) ... Setting up libpcre2-16-0:arm64 (10.46-1) ... Setting up libsub-install-perl (0.929-1) ... Setting up libelf1t64:arm64 (0.194-1) ... Setting up libkrb5support0:arm64 (1.21.3-5) ... Setting up libsasl2-modules-db:arm64 (2.1.28+dfsg1-10) ... Setting up tzdata (2025b-5) ... Current default time zone: 'Etc/UTC' Local time is now: Thu Oct 30 20:27:20 UTC 2025. Universal Time is now: Thu Oct 30 20:27:20 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up zip (3.0-15) ... Setting up libpackage-stash-xs-perl:arm64 (0.30-1+b4) ... Setting up autotools-dev (20240727.1) ... Setting up libpcre2-32-0:arm64 (10.46-1) ... Setting up libblas3:arm64 (3.12.1-7) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode Setting up libpkgconf3:arm64 (1.8.1-4) ... Setting up libalgorithm-c3-perl (0.11-2) ... Setting up libjpeg62-turbo:arm64 (1:2.1.5-4) ... Setting up libswitch-perl (2.17-3) ... Setting up libx11-data (2:1.8.12-1) ... Setting up libjpeg62-turbo-dev:arm64 (1:2.1.5-4) ... Setting up libncurses6:arm64 (6.5+20250216-2) ... Setting up libfribidi0:arm64 (1.0.16-3) ... Setting up libproc2-0:arm64 (2:4.0.4-9) ... Setting up libunistring5:arm64 (1.3-2) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libpng16-16t64:arm64 (1.6.50-1) ... Setting up libvariable-magic-perl (0.64-1+b1) ... Setting up libio-html-perl (1.004-3) ... Setting up libtcl8.6:arm64 (8.6.17+dfsg-1) ... Setting up autopoint (0.23.1-2) ... Setting up libb-hooks-op-check-perl:arm64 (0.22-3+b2) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up pkgconf-bin (1.8.1-4) ... Setting up libk5crypto3:arm64 (1.21.3-5) ... Setting up libparams-util-perl (1.102-3+b1) ... Setting up libsasl2-2:arm64 (2.1.28+dfsg1-10) ... Setting up libgfortran5:arm64 (15.2.0-7) ... Setting up autoconf (2.72-3.1) ... Setting up libnghttp3-9:arm64 (1.12.0-1) ... Setting up libsub-exporter-progressive-perl (0.001013-3) ... Setting up libwebp7:arm64 (1.5.0-0.1) ... Setting up libtimedate-perl (2.3300-2) ... Setting up liblzma-dev:arm64 (5.8.1-2) ... Setting up libsub-name-perl:arm64 (0.28-1) ... Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libffi8:arm64 (3.5.2-2) ... Setting up libpcre2-posix3:arm64 (10.46-1) ... Setting up dwz (0.16-2) ... Setting up sensible-utils (0.0.26) ... Setting up libtiff6:arm64 (4.7.1-1) ... Setting up libuchardet0:arm64 (0.0.8-2) ... Setting up procps (2:4.0.4-9) ... Setting up libtasn1-6:arm64 (4.20.0-2) ... Setting up libx11-6:arm64 (2:1.8.12-1) ... Setting up libthai-data (0.1.29-2) ... Setting up libdevel-globaldestruction-perl (0.14-4) ... Setting up netbase (6.5) ... Setting up libngtcp2-16:arm64 (1.16.0-1) ... Setting up libdevel-stacktrace-perl (2.0500-1) ... Setting up libkrb5-3:arm64 (1.21.3-5) ... Setting up libicu76:arm64 (76.1-4) ... Setting up libpaper2:arm64 (2.2.5-0.3+b2) ... Setting up libssh2-1t64:arm64 (1.11.1-1) ... Setting up openssl (3.5.4-1) ... Setting up libdeflate-dev:arm64 (1.23-2) ... Setting up readline-common (8.3-3) ... Setting up xdg-utils (1.2.1-2) ... update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode Setting up libldap2:arm64 (2.6.10+dfsg-1) ... Setting up liburi-perl (5.34-2) ... Setting up libxmuu1:arm64 (2:1.1.3-3+b4) ... Setting up libblas-dev:arm64 (3.12.1-7) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode Setting up dctrl-tools (2.24-3+b1) ... Setting up libbz2-dev:arm64 (1.0.8-6) ... Setting up automake (1:1.18.1-2) ... update-alternatives: using /usr/bin/automake-1.18 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up libice6:arm64 (2:1.1.1-1) ... Setting up libhttp-date-perl (6.06-1) ... Setting up liblapack3:arm64 (3.12.1-7) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode Setting up libncurses-dev:arm64 (6.5+20250216-2) ... Setting up gettext (0.23.1-2+b1) ... Setting up libpcre2-dev:arm64 (10.46-1) ... Setting up libxrender1:arm64 (1:0.9.12-1) ... Setting up libtool (2.5.4-7) ... Setting up fontconfig-config (2.15.0-2.4) ... Setting up libpng-dev:arm64 (1.6.50-1) ... Setting up libjpeg-dev:arm64 (1:2.1.5-4) ... Setting up libxext6:arm64 (2:1.3.4-1+b3) ... Setting up libidn2-0:arm64 (2.3.8-4) ... Setting up libpaper-utils (2.2.5-0.3+b2) ... Setting up libclass-c3-perl (0.35-2) ... Setting up libdevel-callchecker-perl:arm64 (0.009-2) ... Setting up libgfortran-15-dev:arm64 (15.2.0-7) ... Setting up pkgconf:arm64 (1.8.1-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (21) ... Setting up libthai0:arm64 (0.1.29-2+b1) ... Setting up ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 150 added, 0 removed; done. Setting up libglib2.0-0t64:arm64 (2.86.1-1) ... No schema files found: doing nothing. Setting up libfreetype6:arm64 (2.13.3+dfsg-1) ... Setting up gfortran-15-aarch64-linux-gnu (15.2.0-7) ... Setting up libp11-kit0:arm64 (0.25.9-2) ... Setting up liblapack-dev:arm64 (3.12.1-7) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode Setting up libgssapi-krb5-2:arm64 (1.21.3-5) ... Setting up libdata-optlist-perl (0.114-1) ... Setting up icu-devtools (76.1-4) ... Setting up ucf (3.0052) ... Setting up libngtcp2-crypto-ossl0:arm64 (1.16.0-1) ... Setting up libreadline8t64:arm64 (8.3-3) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up xauth (1:1.1.2-1.1) ... Setting up groff-base (1.23.0-9) ... Setting up libharfbuzz0b:arm64 (12.1.0-1) ... Setting up gfortran-aarch64-linux-gnu (4:15.2.0-4) ... Setting up libxss1:arm64 (1:1.2.3-1+b3) ... Setting up libfontconfig1:arm64 (2.15.0-2.4) ... Setting up libmro-compat-perl (0.15-2) ... Setting up libsm6:arm64 (2:1.2.6-1) ... Setting up libpython3.13-stdlib:arm64 (3.13.9-1) ... Setting up libicu-dev:arm64 (76.1-4) ... Setting up gfortran-15 (15.2.0-7) ... Setting up libsub-exporter-perl (0.990-1) ... Setting up libpython3-stdlib:arm64 (3.13.7-1) ... Setting up libhttp-message-perl (7.01-1) ... Setting up libeval-closure-perl (0.14-3) ... Setting up libgnutls30t64:arm64 (3.8.10-3) ... Setting up fontconfig (2.15.0-2.4) ... Regenerating fonts cache... done. Setting up libxft2:arm64 (2.3.6-1+b4) ... Setting up libtirpc3t64:arm64 (1.3.6+ds-1) ... Setting up python3.13 (3.13.9-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libtk8.6:arm64 (8.6.17-1) ... Setting up libparams-classify-perl:arm64 (0.015-2+b4) ... Setting up libpango-1.0-0:arm64 (1.56.3-2) ... Setting up libpsl5t64:arm64 (0.21.2-1.1+b1) ... Setting up python3 (3.13.7-1) ... Setting up libreadline-dev:arm64 (8.3-3) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up gfortran (4:15.2.0-4) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libcairo2:arm64 (1.18.4-1+b1) ... Setting up libtirpc-dev:arm64 (1.3.6+ds-1) ... Setting up libmodule-runtime-perl (0.018-1) ... Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-3) ... Setting up libxt6t64:arm64 (1:1.2.1-1.3) ... Setting up libdist-checkconflicts-perl (0.11-2) ... Setting up libpangoft2-1.0-0:arm64 (1.56.3-2) ... Setting up libngtcp2-crypto-gnutls8:arm64 (1.16.0-1) ... Setting up libpangocairo-1.0-0:arm64 (1.56.3-2) ... Setting up libcurl4t64:arm64 (8.17.0~rc3-1) ... Setting up libmodule-implementation-perl (0.09-2) ... Setting up libpackage-stash-perl (0.40-1) ... Setting up libcurl3t64-gnutls:arm64 (8.17.0~rc3-1) ... Setting up libwww-curl-perl:arm64 (4.17-12) ... Setting up debhelper (13.28) ... Setting up libmodule-runtime-conflicts-perl (0.003-2) ... Setting up libclass-load-perl (0.25-2) ... Setting up r-base-core (4.5.1-1) ... Creating config file /etc/R/Renviron with new version Setting up r-cran-lattice (0.22-7-1) ... Setting up libpackage-deprecationmanager-perl (0.18-1) ... Setting up libdevel-overloadinfo-perl (0.008-1) ... Setting up libclass-load-xs-perl (0.10-2+b4) ... Setting up r-cran-pkgkitten (0.2.4-1) ... Setting up libb-hooks-endofscope-perl (0.28-2) ... Setting up r-cran-rappdirs (0.3.3-1+b1) ... Setting up r-cran-filelock (1.0.3-1+b1) ... Setting up r-cran-littler (0.3.21-2) ... Setting up r-cran-rcpp (1.1.0-1) ... Setting up r-bioc-biocgenerics (0.52.0-2) ... Setting up r-cran-rlang (1.1.5-3) ... Setting up r-base-dev (4.5.1-1) ... Setting up littler (0.3.21-2) ... Setting up r-cran-withr (3.0.2+dfsg-1) ... Setting up libmoose-perl:arm64 (2.4000-1) ... Setting up r-cran-rprojroot (2.0.4-2) ... Setting up r-cran-png (0.1-8-1+b2) ... Setting up r-cran-jsonlite (1.9.1+dfsg-1) ... Setting up libnamespace-clean-perl (0.27-2) ... Setting up r-cran-matrix (1.7-4-1) ... Setting up r-cran-here (1.0.1-2) ... Setting up r-cran-rcpptoml (0.2.3+dfsg-1) ... Setting up r-cran-reticulate (1.41.0.1+dfsg-1) ... Setting up r-bioc-dir.expiry (1.14.0+ds-2) ... Setting up r-bioc-basilisk.utils (1.18.0+ds-2) ... Setting up libwww-curl-simple-perl (0.100191-3) ... Setting up dh-r (20250812) ... Processing triggers for libc-bin (2.41-12) ... Processing triggers for ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/3485943/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for experimental I: user script /srv/workspace/pbuilder/3485943/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/r-bioc-basilisk-1.18.0+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../r-bioc-basilisk_1.18.0+ds-1_source.changes dpkg-buildpackage: info: source package r-bioc-basilisk dpkg-buildpackage: info: source version 1.18.0+ds-1 dpkg-buildpackage: info: source distribution experimental dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --buildsystem R dh_auto_clean -O--buildsystem=R dh_autoreconf_clean -O--buildsystem=R dh_clean -O--buildsystem=R debian/rules binary dh binary --buildsystem R dh_update_autotools_config -O--buildsystem=R dh_autoreconf -O--buildsystem=R dh_auto_configure -O--buildsystem=R dh_auto_build -O--buildsystem=R dh_auto_test -O--buildsystem=R create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=R dh_prep -O--buildsystem=R dh_auto_install --destdir=debian/r-bioc-basilisk/ -O--buildsystem=R I: R Package: basilisk Version: 1.18.0 I: Building using R version 4.5.1-1 I: R API version: r-api-4.0 I: Using built-time from d/changelog: Tue, 26 Nov 2024 14:01:47 +0100 mkdir -p /build/reproducible-path/r-bioc-basilisk-1.18.0\+ds/debian/r-bioc-basilisk/usr/lib/R/site-library R CMD INSTALL -l /build/reproducible-path/r-bioc-basilisk-1.18.0\+ds/debian/r-bioc-basilisk/usr/lib/R/site-library --clean . --built-timestamp="'Tue, 26 Nov 2024 14:01:47 +0100'" * installing *source* package 'basilisk' ... ** this is package 'basilisk' version '1.18.0' file 'inst/doc/motivation.html' is missing file 'tests/testthat/test-install.R' has the wrong MD5 checksum ** using non-staged installation via StagedInstall field ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (basilisk) I: Using r-cran-reticulate for Depends:reticulate I: Using r-cran-knitr for Suggests:knitr I: Using r-cran-rmarkdown for Suggests:rmarkdown I: Using r-bioc-biocstyle for Suggests:BiocStyle I: Using r-cran-testthat for Suggests:testthat I: Using r-cran-callr for Suggests:callr I: Using r-bioc-dir.expiry for Imports:dir.expiry I: Using r-bioc-basilisk.utils for Imports:basilisk.utils (>= 1.15.1) I: BioConductor API version: r-api-bioc-3.20 I: Use r-bioc-basilisk as Debian binary package for variables substitution dh_installdocs -O--buildsystem=R dh_installchangelogs -O--buildsystem=R dh_installsystemduser -O--buildsystem=R dh_lintian -O--buildsystem=R dh_perl -O--buildsystem=R dh_link -O--buildsystem=R dh_strip_nondeterminism -O--buildsystem=R dh_compress -O--buildsystem=R dh_fixperms -O--buildsystem=R dh_missing -O--buildsystem=R dh_dwz -a -O--buildsystem=R dh_strip -a -O--buildsystem=R dh_makeshlibs -a -O--buildsystem=R dh_shlibdeps -a -O--buildsystem=R dh_installdeb -O--buildsystem=R dh_gencontrol -O--buildsystem=R dh_md5sums -O--buildsystem=R dh_builddeb -O--buildsystem=R dpkg-deb: building package 'r-bioc-basilisk' in '../r-bioc-basilisk_1.18.0+ds-1_arm64.deb'. dpkg-genbuildinfo --build=binary -O../r-bioc-basilisk_1.18.0+ds-1_arm64.buildinfo dpkg-genchanges --build=binary -O../r-bioc-basilisk_1.18.0+ds-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/3485943/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/3485943/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3485943 and its subdirectories I: Current time: Fri Oct 31 10:27:47 +14 2025 I: pbuilder-time-stamp: 1761856067 + false + set +x Thu Oct 30 20:27:47 UTC 2025 I: Signing ./b2/r-bioc-basilisk_1.18.0+ds-1_arm64.buildinfo as r-bioc-basilisk_1.18.0+ds-1_arm64.buildinfo.asc Thu Oct 30 20:27:47 UTC 2025 I: Signed ./b2/r-bioc-basilisk_1.18.0+ds-1_arm64.buildinfo as ./b2/r-bioc-basilisk_1.18.0+ds-1_arm64.buildinfo.asc Thu Oct 30 20:27:47 UTC 2025 - build #2 for r-bioc-basilisk/experimental/arm64 on codethink03-arm64 done. Starting cleanup. All cleanup done. Thu Oct 30 20:27:47 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-nAQkfnfU, removing. /srv/reproducible-results/rbuild-debian/r-b-build.RRJcXJQJ: total 108 drwxrwxr-x 2 jenkins jenkins 4096 Oct 30 20:26 b1 drwxrwxr-x 2 jenkins jenkins 4096 Oct 30 20:27 b2 -rw-rw-r-- 1 jenkins jenkins 2206 Nov 26 2024 r-bioc-basilisk_1.18.0+ds-1.dsc -rw------- 1 jenkins jenkins 94182 Oct 30 20:26 rbuildlog.QpeUpoG /srv/reproducible-results/rbuild-debian/r-b-build.RRJcXJQJ/b1: total 272 -rw-r--r-- 1 jenkins jenkins 90467 Oct 30 20:26 build.log -rw-r--r-- 1 jenkins jenkins 3648 Oct 30 20:26 r-bioc-basilisk_1.18.0+ds-1.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2206 Oct 30 20:26 r-bioc-basilisk_1.18.0+ds-1.dsc -rw-r--r-- 1 jenkins jenkins 10709 Oct 30 20:26 r-bioc-basilisk_1.18.0+ds-1_arm64.buildinfo -rw-rw-r-- 1 jenkins jenkins 11591 Oct 30 20:26 r-bioc-basilisk_1.18.0+ds-1_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1259 Oct 30 20:26 r-bioc-basilisk_1.18.0+ds-1_arm64.changes -rw-r--r-- 1 jenkins jenkins 99384 Oct 30 20:26 r-bioc-basilisk_1.18.0+ds-1_arm64.deb -rw-r--r-- 1 jenkins jenkins 1712 Oct 30 20:26 r-bioc-basilisk_1.18.0+ds-1_source.changes -rw-r--r-- 1 jenkins jenkins 29756 Oct 30 20:26 r-bioc-basilisk_1.18.0+ds.orig.tar.xz /srv/reproducible-results/rbuild-debian/r-b-build.RRJcXJQJ/b2: total 528 -rw-rw-r-- 1 jenkins jenkins 364267 Oct 30 20:27 build.log -rw-r--r-- 1 jenkins jenkins 3648 Oct 30 20:27 r-bioc-basilisk_1.18.0+ds-1.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2206 Oct 30 20:27 r-bioc-basilisk_1.18.0+ds-1.dsc -rw-rw-r-- 1 jenkins jenkins 10709 Oct 30 20:27 r-bioc-basilisk_1.18.0+ds-1_arm64.buildinfo -rw-rw-r-- 1 jenkins jenkins 11591 Oct 30 20:27 r-bioc-basilisk_1.18.0+ds-1_arm64.buildinfo.asc -rw-rw-r-- 1 jenkins jenkins 1259 Oct 30 20:27 r-bioc-basilisk_1.18.0+ds-1_arm64.changes -rw-r--r-- 1 jenkins jenkins 99384 Oct 30 20:27 r-bioc-basilisk_1.18.0+ds-1_arm64.deb -rw-rw-r-- 1 jenkins jenkins 1712 Oct 30 20:27 r-bioc-basilisk_1.18.0+ds-1_source.changes -rw-r--r-- 1 jenkins jenkins 29756 Oct 30 20:27 r-bioc-basilisk_1.18.0+ds.orig.tar.xz Thu Oct 30 20:27:48 UTC 2025 I: Deleting $TMPDIR on codethink03-arm64.debian.net. Thu Oct 30 20:27:48 UTC 2025 I: r-bioc-basilisk_1.18.0+ds-1_arm64.changes: Format: 1.8 Date: Tue, 26 Nov 2024 14:01:47 +0100 Source: r-bioc-basilisk Binary: r-bioc-basilisk Architecture: arm64 Version: 1.18.0+ds-1 Distribution: experimental Urgency: medium Maintainer: Debian R Packages Maintainers Changed-By: Michael R. Crusoe Description: r-bioc-basilisk - freezing Python dependencies inside Bioconductor packages Changes: r-bioc-basilisk (1.18.0+ds-1) experimental; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.7.0 (routine-update) * dh-update-R to update Build-Depends (routine-update) Checksums-Sha1: b5eb18f8f29a7ca50d9d5d6f7aa2134d251ca663 10709 r-bioc-basilisk_1.18.0+ds-1_arm64.buildinfo 6cd923f7f4ba824882e194fc072702cf3c80e008 99384 r-bioc-basilisk_1.18.0+ds-1_arm64.deb Checksums-Sha256: f6dabe8607004ed14ba5fc1f566ec30e186bd9276613effda9c01dbe238c276b 10709 r-bioc-basilisk_1.18.0+ds-1_arm64.buildinfo 87d1bf7acb5762a72f5265e8da4f465840d43005403246d994894b731d73c688 99384 r-bioc-basilisk_1.18.0+ds-1_arm64.deb Files: 6928b9f48e11a4eb5d4dc87d38b9b517 10709 gnu-r optional r-bioc-basilisk_1.18.0+ds-1_arm64.buildinfo 6fc8d50365a95cf677d37a3fa912db0c 99384 gnu-r optional r-bioc-basilisk_1.18.0+ds-1_arm64.deb removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/experimental/arm64/r-bioc-basilisk_1.18.0+ds-1.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/experimental/arm64/r-bioc-basilisk_1.18.0+ds-1.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/experimental/arm64/r-bioc-basilisk_1.18.0+ds-1.build1.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/experimental/arm64/r-bioc-basilisk_1.18.0+ds-1.build2.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/buildinfo/experimental/arm64/r-bioc-basilisk_1.18.0+ds-1_arm64.buildinfo' removed '/var/lib/jenkins/userContent/reproducible/debian/logdiffs/experimental/arm64/r-bioc-basilisk_1.18.0+ds-1.diff.gz' Diff of the two buildlogs: -- --- b1/build.log 2025-10-30 20:26:41.207824087 +0000 +++ b2/build.log 2025-10-30 20:27:48.355912164 +0000 @@ -1,8 +1,2549 @@ I: pbuilder: network access will be disabled during build -I: Current time: Thu Oct 30 08:25:42 -12 2025 -I: pbuilder-time-stamp: 1761855942 +I: Current time: Fri Oct 31 10:26:42 +14 2025 +I: pbuilder-time-stamp: 1761856002 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/experimental-reproducible-base.tgz] +tar: ./build: time stamp 2026-11-29 03:57:36 is 34018252.77718071 s in the future +tar: ./dev/null: time stamp 2026-11-29 03:57:21 is 34018237.77706639 s in the future +tar: ./dev/zero: time stamp 2026-11-29 03:57:21 is 34018237.77705447 s in the future +tar: ./dev/full: time stamp 2026-11-29 03:57:21 is 34018237.77704563 s in the future +tar: ./dev/random: time stamp 2026-11-29 03:57:21 is 34018237.77703635 s in the future +tar: ./dev/urandom: time stamp 2026-11-29 03:57:21 is 34018237.77702791 s in the future +tar: ./dev/tty: time stamp 2026-11-29 03:57:21 is 34018237.77701955 s in the future +tar: ./dev/console: time stamp 2026-11-29 03:57:21 is 34018237.77701107 s in the future +tar: ./dev/pts: time stamp 2026-11-29 03:57:21 is 34018237.77700179 s in the future +tar: ./dev/ptmx: time stamp 2026-11-29 03:57:21 is 34018237.77697771 s in the future +tar: ./etc/ld.so.cache: time stamp 2026-12-01 06:31:24 is 34200280.77683935 s in the future +tar: ./etc/default: time stamp 2026-11-29 03:57:40 is 34018256.77678159 s in the future +tar: ./etc/dpkg/origins/default: time stamp 2026-11-29 03:57:21 is 34018237.77673659 s in the future +tar: ./etc/dpkg/origins: time stamp 2026-11-29 03:57:27 is 34018243.77672911 s in the future +tar: ./etc/dpkg/dpkg.cfg.d/02speedup: time stamp 2026-11-29 03:57:53 is 34018269.77669431 s in the future +tar: ./etc/dpkg/dpkg.cfg.d: time stamp 2026-11-29 03:57:53 is 34018269.77668679 s in the future +tar: ./etc/dpkg: time stamp 2026-11-29 03:57:36 is 34018252.77665895 s in the future +tar: ./etc/skel: time stamp 2026-11-29 03:57:27 is 34018243.77656151 s in the future +tar: ./etc/update-motd.d: time stamp 2026-11-29 03:57:27 is 34018243.77654147 s in the future +tar: ./etc/apt/sources.list: time stamp 2026-11-29 03:57:53 is 34018269.77651151 s in the future +tar: ./etc/apt/apt.conf.d/80proxy: time stamp 2026-11-29 03:57:53 is 34018269.77649587 s in the future +tar: ./etc/apt/apt.conf.d/15pbuilder: time stamp 2026-11-29 03:57:36 is 34018252.77646547 s in the future +tar: ./etc/apt/apt.conf.d: time stamp 2026-11-29 12:29:48 is 34048984.77645939 s in the future +tar: ./etc/apt/preferences.d/reproducible: time stamp 2026-11-29 03:58:04 is 34018280.77643243 s in the future +tar: ./etc/apt/preferences.d: time stamp 2026-11-29 03:58:04 is 34018280.77598171 s in the future +tar: ./etc/apt/sources.list.d/experimental.list: time stamp 2026-11-29 03:57:53 is 34018269.77595695 s in the future +tar: ./etc/apt/sources.list.d/reproducible.list: time stamp 2026-11-29 03:58:04 is 34018280.77594259 s in the future +tar: ./etc/apt/sources.list.d: time stamp 2026-11-29 03:58:04 is 34018280.77593591 s in the future +tar: ./etc/apt/trusted.gpg.d/reproducible.asc: time stamp 2026-11-29 03:58:04 is 34018280.77039275 s in the future +tar: ./etc/apt/trusted.gpg.d: time stamp 2026-11-29 03:58:04 is 34018280.77035791 s in the future +tar: ./etc/apt: time stamp 2026-11-29 03:57:53 is 34018269.77035015 s in the future +tar: ./etc/cron.daily: time stamp 2026-11-29 12:29:48 is 34048984.76949603 s in the future +tar: ./etc/logrotate.d: time stamp 2026-11-29 12:29:48 is 34048984.76942791 s in the future +tar: ./etc/ld.so.conf.d: time stamp 2026-11-29 03:57:43 is 34018259.76921187 s in the future +tar: ./etc/security/opasswd: time stamp 2026-11-29 03:57:27 is 34018243.76889487 s in the future +tar: ./etc/security: time stamp 2026-11-29 03:57:27 is 34018243.76888015 s in the future +tar: ./etc/pam.d/common-auth: time stamp 2026-11-29 03:57:28 is 34018244.76880187 s in the future +tar: ./etc/pam.d/common-account: time stamp 2026-11-29 03:57:28 is 34018244.76878243 s in the future +tar: ./etc/pam.d/common-password: time stamp 2026-11-29 03:57:28 is 34018244.76877067 s in the future +tar: 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34018253.90090275 s in the future +tar: ./usr/lib/locale/aa_ER: time stamp 2026-11-29 03:57:43 is 34018253.90089639 s in the future +tar: ./usr/lib/locale: time stamp 2026-11-29 03:57:43 is 34018253.90089043 s in the future +tar: ./usr/lib/aarch64-linux-gnu/perl/cross-config-5.40.1: time stamp 2026-11-29 03:57:34 is 34018244.90088155 s in the future +tar: ./usr/lib/aarch64-linux-gnu/perl: time stamp 2026-11-29 03:57:34 is 34018244.90087523 s in the future +tar: ./usr/lib/aarch64-linux-gnu: time stamp 2026-12-01 06:31:24 is 34200274.90086935 s in the future +tar: ./usr/lib: time stamp 2026-11-29 03:57:35 is 34018245.90086355 s in the future +tar: ./usr/include/x86_64-linux-gnux32/asm: time stamp 2026-11-29 03:57:35 is 34018245.90085615 s in the future +tar: ./usr/include/x86_64-linux-gnux32: time stamp 2026-11-29 03:57:35 is 34018245.90085003 s in the future +tar: ./usr/include/x86_64-linux-gnu/asm: time stamp 2026-11-29 03:57:35 is 34018245.90084323 s in the future +tar: ./usr/include/x86_64-linux-gnu: time stamp 2026-11-29 03:57:35 is 34018245.90083747 s in the future +tar: ./usr/include/sparc64-linux-gnu/asm: time stamp 2026-11-29 03:57:35 is 34018245.90083071 s in the future +tar: ./usr/include/sparc64-linux-gnu: time stamp 2026-11-29 03:57:35 is 34018245.90082495 s in the future +tar: ./usr/include/sh4-linux-gnu/asm: time stamp 2026-11-29 03:57:35 is 34018245.90081779 s in the future +tar: ./usr/include/sh4-linux-gnu: time stamp 2026-11-29 03:57:35 is 34018245.90081207 s in the future +tar: ./usr/include/s390x-linux-gnu/asm: time stamp 2026-11-29 03:57:35 is 34018245.90080419 s in the future +tar: ./usr/include/s390x-linux-gnu: time stamp 2026-11-29 03:57:35 is 34018245.90079811 s in the future +tar: ./usr/include/riscv64-linux-gnu/asm/vendor: time stamp 2026-11-29 03:57:35 is 34018245.90079031 s in the future +tar: ./usr/include/riscv64-linux-gnu/asm: time stamp 2026-11-29 03:57:35 is 34018245.90078415 s in the future +tar: ./usr/include/riscv64-linux-gnu: time stamp 2026-11-29 03:57:35 is 34018245.90077835 s in the future +tar: ./usr/include/powerpc64le-linux-gnu/asm: time stamp 2026-11-29 03:57:35 is 34018245.90077099 s in the future +tar: ./usr/include/powerpc64le-linux-gnu: time stamp 2026-11-29 03:57:35 is 34018245.90076515 s in the future +tar: ./usr/include/powerpc64-linux-gnu/asm: time stamp 2026-11-29 03:57:35 is 34018245.90075739 s in the future +tar: ./usr/include/powerpc64-linux-gnu: time stamp 2026-11-29 03:57:35 is 34018245.90075155 s in the future +tar: ./usr/include/powerpc-linux-gnu/asm: time stamp 2026-11-29 03:57:35 is 34018245.90074411 s in the future +tar: ./usr/include/powerpc-linux-gnu: time stamp 2026-11-29 03:57:35 is 34018245.90073835 s in the future +tar: ./usr/include/mipsisa64r6el-linux-gnuabi64/asm: time stamp 2026-11-29 03:57:35 is 34018245.90073111 s in the future +tar: ./usr/include/mipsisa64r6el-linux-gnuabi64: time stamp 2026-11-29 03:57:35 is 34018245.90072535 s in the future +tar: ./usr/include/mipsel-linux-gnu/asm: time stamp 2026-11-29 03:57:35 is 34018245.90071819 s in the future +tar: ./usr/include/mipsel-linux-gnu: time stamp 2026-11-29 03:57:35 is 34018245.90071195 s in the future +tar: ./usr/include/mips64el-linux-gnuabi64/asm: time stamp 2026-11-29 03:57:35 is 34018245.90070483 s in the future +tar: ./usr/include/mips64el-linux-gnuabi64: time stamp 2026-11-29 03:57:35 is 34018245.90069887 s in the future +tar: ./usr/include/mips64-linux-gnuabi64/asm: time stamp 2026-11-29 03:57:35 is 34018245.90069187 s in the future +tar: ./usr/include/mips64-linux-gnuabi64: time stamp 2026-11-29 03:57:35 is 34018245.90068595 s in the future +tar: ./usr/include/mips-linux-gnu/asm: time stamp 2026-11-29 03:57:35 is 34018245.90067787 s in the future +tar: ./usr/include/mips-linux-gnu: time stamp 2026-11-29 03:57:35 is 34018245.90067119 s in the future +tar: ./usr/include/m68k-linux-gnu/asm: time stamp 2026-11-29 03:57:35 is 34018245.90066335 s in the future +tar: ./usr/include/m68k-linux-gnu: time stamp 2026-11-29 03:57:35 is 34018245.90065743 s in the future +tar: ./usr/include/loongarch64-linux-gnu/asm: time stamp 2026-11-29 03:57:35 is 34018245.90065055 s in the future +tar: ./usr/include/loongarch64-linux-gnu: time stamp 2026-11-29 03:57:35 is 34018245.90064479 s in the future +tar: ./usr/include/i386-linux-gnu/asm: time stamp 2026-11-29 03:57:35 is 34018245.90063779 s in the future +tar: ./usr/include/i386-linux-gnu: time stamp 2026-11-29 03:57:34 is 34018244.90063183 s in the future +tar: ./usr/include/hppa-linux-gnu/asm: time stamp 2026-11-29 03:57:35 is 34018245.90062399 s in the future +tar: ./usr/include/hppa-linux-gnu: time stamp 2026-11-29 03:57:34 is 34018244.90061783 s in the future +tar: ./usr/include/arm-linux-gnueabihf/asm: time stamp 2026-11-29 03:57:35 is 34018245.90061055 s in the future +tar: ./usr/include/arm-linux-gnueabihf: time stamp 2026-11-29 03:57:34 is 34018244.90060463 s in the future +tar: ./usr/include/arm-linux-gnueabi/asm: time stamp 2026-11-29 03:57:35 is 34018245.90059727 s in the future +tar: ./usr/include/arm-linux-gnueabi: time stamp 2026-11-29 03:57:34 is 34018244.90059135 s in the future +tar: ./usr/include/alpha-linux-gnu/asm: time stamp 2026-11-29 03:57:35 is 34018245.90058427 s in the future +tar: ./usr/include/alpha-linux-gnu: time stamp 2026-11-29 03:57:34 is 34018244.90057795 s in the future +tar: ./usr/include/aarch64-linux-gnu/asm: time stamp 2026-11-29 03:57:35 is 34018245.90057071 s in the future +tar: ./usr/include/aarch64-linux-gnu: time stamp 2026-11-29 03:57:34 is 34018244.90056411 s in the future +tar: ./usr/include: time stamp 2026-11-29 03:57:35 is 34018245.90055851 s in the future +tar: ./usr/bin: time stamp 2026-11-29 12:29:48 is 34048978.90055219 s in the future +tar: ./usr: time stamp 2026-11-29 03:57:21 is 34018231.90054671 s in the future +tar: ./etc/systemd/system/timers.target.wants: time stamp 2026-11-29 03:57:36 is 34018246.90053323 s in the future +tar: ./etc/systemd/system: time stamp 2026-11-29 03:57:22 is 34018232.90052659 s in the future +tar: ./etc/alternatives: time stamp 2026-11-29 03:57:43 is 34018253.90051635 s in the future I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem @@ -24,53 +2565,85 @@ dpkg-source: info: applying skip_failing_test.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/3317326/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/3485943/tmp/hooks/D01_modify_environment starting +debug: Running on codethink03-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Oct 30 20:26 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/3485943/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/3485943/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.3.3(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='experimental' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=experimental + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='9e48869fc3d448cf94f325040a0fe04f' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='3317326' - PS1='# ' - PS2='> ' + INVOCATION_ID=e1b96b11ae1c4dc6802bd1da85d47601 + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=3485943 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.RRJcXJQJ/pbuilderrc_wVeR --distribution experimental --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/experimental-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.RRJcXJQJ/b1 --logfile b1/build.log r-bioc-basilisk_1.18.0+ds-1.dsc' - SUDO_GID='109' - SUDO_HOME='/var/lib/jenkins' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.RRJcXJQJ/pbuilderrc_VdRM --distribution experimental --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/experimental-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.RRJcXJQJ/b2 --logfile b2/build.log r-bioc-basilisk_1.18.0+ds-1.dsc' + SUDO_GID=109 + SUDO_HOME=/var/lib/jenkins + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink04-arm64 6.12.48+deb13-cloud-arm64 #1 SMP Debian 6.12.48-1 (2025-09-20) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.12.48+deb13-cloud-arm64 #1 SMP Debian 6.12.48-1 (2025-09-20) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/3317326/tmp/hooks/D02_print_environment finished +I: user script /srv/workspace/pbuilder/3485943/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -344,7 +2917,7 @@ Get: 224 http://deb.debian.org/debian unstable/main arm64 r-cran-rlang arm64 1.1.5-3 [1703 kB] Get: 225 http://deb.debian.org/debian unstable/main arm64 r-cran-withr all 3.0.2+dfsg-1 [226 kB] Get: 226 http://deb.debian.org/debian unstable/main arm64 r-cran-reticulate arm64 1.41.0.1+dfsg-1 [1546 kB] -Fetched 122 MB in 1s (86.4 MB/s) +Fetched 122 MB in 1s (204 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19964 files and directories currently installed.) @@ -1089,8 +3662,8 @@ Setting up tzdata (2025b-5) ... Current default time zone: 'Etc/UTC' -Local time is now: Thu Oct 30 20:26:17 UTC 2025. -Universal Time is now: Thu Oct 30 20:26:17 UTC 2025. +Local time is now: Thu Oct 30 20:27:20 UTC 2025. +Universal Time is now: Thu Oct 30 20:27:20 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up zip (3.0-15) ... @@ -1297,7 +3870,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/r-bioc-basilisk-1.18.0+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../r-bioc-basilisk_1.18.0+ds-1_source.changes +I: user script /srv/workspace/pbuilder/3485943/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for experimental +I: user script /srv/workspace/pbuilder/3485943/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/r-bioc-basilisk-1.18.0+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../r-bioc-basilisk_1.18.0+ds-1_source.changes dpkg-buildpackage: info: source package r-bioc-basilisk dpkg-buildpackage: info: source version 1.18.0+ds-1 dpkg-buildpackage: info: source distribution experimental @@ -1376,12 +3953,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/3485943/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/3485943/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/3317326 and its subdirectories -I: Current time: Thu Oct 30 08:26:40 -12 2025 -I: pbuilder-time-stamp: 1761856000 +I: removing directory /srv/workspace/pbuilder/3485943 and its subdirectories +I: Current time: Fri Oct 31 10:27:47 +14 2025 +I: pbuilder-time-stamp: 1761856067 Compressing the 2nd log... /var/lib/jenkins/userContent/reproducible/debian/logdiffs/experimental/arm64/r-bioc-basilisk_1.18.0+ds-1.diff: 89.5% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/experimental/arm64/r-bioc-basilisk_1.18.0+ds-1.diff.gz b2/build.log: 88.0% -- replaced with stdout Compressing the 1st log... b1/build.log: 81.9% -- replaced with stdout Thu Oct 30 20:27:49 UTC 2025 I: diffoscope 306 will be used to compare the two builds: ++ date -u +%s + DIFFOSCOPE_STAMP=/var/log/reproducible-builds/diffoscope_stamp_r-bioc-basilisk_experimental_arm64_1761856069 + touch /var/log/reproducible-builds/diffoscope_stamp_r-bioc-basilisk_experimental_arm64_1761856069 + RESULT=0 + systemd-run '--description=diffoscope on r-bioc-basilisk/1.18.0+ds-1 in experimental/arm64' --slice=rb-build-diffoscope.slice -u rb-diffoscope-arm64_10-102508 '--property=SuccessExitStatus=1 124' --user --send-sighup --pipe --wait -E TMPDIR timeout 155m nice schroot --directory /srv/reproducible-results/rbuild-debian/r-b-build.RRJcXJQJ --run-session -c jenkins-reproducible-unstable-diffoscope-0c1b371e-e0d7-4f6c-9f62-f40b8129bda2 -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian/r-b-build.RRJcXJQJ/dbd-tmp-NZa5dRi ; timeout 150m diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.RRJcXJQJ/r-bioc-basilisk_1.18.0+ds-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.RRJcXJQJ/r-bioc-basilisk_1.18.0+ds-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.RRJcXJQJ/r-bioc-basilisk_1.18.0+ds-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.RRJcXJQJ/b1/r-bioc-basilisk_1.18.0+ds-1_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.RRJcXJQJ/b2/r-bioc-basilisk_1.18.0+ds-1_arm64.changes' + false + set +x Running as unit: rb-diffoscope-arm64_10-102508.service; invocation ID: e4fc5dd2d7674b7daa341498ee758ed0 # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.RRJcXJQJ/r-bioc-basilisk_1.18.0+ds-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.RRJcXJQJ/r-bioc-basilisk_1.18.0+ds-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.RRJcXJQJ/r-bioc-basilisk_1.18.0+ds-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.RRJcXJQJ/b1/r-bioc-basilisk_1.18.0+ds-1_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.RRJcXJQJ/b2/r-bioc-basilisk_1.18.0+ds-1_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited, status=0/SUCCESS Service runtime: 213ms CPU time consumed: 181ms Memory peak: 17.4M (swap: 0B) _ _ _ _ _ _ _ _ __ | |__ (_) ___ ___ | |__ __ _ ___(_) (_)___| | __ | '__|____| '_ \| |/ _ \ / __|____| '_ \ / _` / __| | | / __| |/ / | | |_____| |_) | | (_) | (_|_____| |_) | (_| \__ \ | | \__ \ < |_| |_.__/|_|\___/ \___| |_.__/ \__,_|___/_|_|_|___/_|\_\ Thu Oct 30 20:27:49 UTC 2025 I: diffoscope 306 found no differences in the changes files, and a .buildinfo file also exists. Thu Oct 30 20:27:49 UTC 2025 I: r-bioc-basilisk from experimental built successfully and reproducibly on arm64. INSERT 0 1 INSERT 0 1 DELETE 1 [2025-10-30 20:27:50] INFO: Starting at 2025-10-30 20:27:50.265371 [2025-10-30 20:27:50] INFO: Generating the pages of 1 package(s) [2025-10-30 20:27:50] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/arm64/r-bioc-basilisk_1.10.2+ds-4.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/arm64/r-bioc-basilisk_1.10.2+ds-4.diff.gz is missing [2025-10-30 20:27:50] CRITICAL: https://tests.reproducible-builds.org/debian/experimental/arm64/r-bioc-basilisk didn't produce a buildlog, even though it has been built. [2025-10-30 20:27:50] INFO: Finished at 2025-10-30 20:27:50.499012, took: 0:00:00.233644 Thu Oct 30 20:27:50 UTC 2025 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/experimental/arm64/r-bioc-basilisk.html Thu Oct 30 20:27:50 UTC 2025 I: Removing signed r-bioc-basilisk_1.18.0+ds-1_arm64.buildinfo.asc files: removed './b1/r-bioc-basilisk_1.18.0+ds-1_arm64.buildinfo.asc' removed './b2/r-bioc-basilisk_1.18.0+ds-1_arm64.buildinfo.asc' 1761856070 arm64 experimental r-bioc-basilisk Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/experimental/arm64/r-bioc-basilisk_1.18.0+ds-1.rbuild.log: 80.2% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/experimental/arm64/r-bioc-basilisk_1.18.0+ds-1.rbuild.log.gz [2025-10-30 20:27:50] INFO: Starting at 2025-10-30 20:27:50.849392 [2025-10-30 20:27:50] INFO: Generating the pages of 1 package(s) [2025-10-30 20:27:51] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/arm64/r-bioc-basilisk_1.10.2+ds-4.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/arm64/r-bioc-basilisk_1.10.2+ds-4.diff.gz is missing [2025-10-30 20:27:51] INFO: Finished at 2025-10-30 20:27:51.106846, took: 0:00:00.257458 All cleanup done. Thu Oct 30 20:27:51 UTC 2025 - total duration: 0h 2m 22s. Thu Oct 30 20:27:51 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-nhfep2tj, removing. Finished with result: success Main processes terminated with: code=exited, status=0/SUCCESS Service runtime: 2min 23.747s CPU time consumed: 3.174s Memory peak: 37.6M (swap: 0B)