Running as unit: rb-build-arm64_10-68301.service ==================================================================================== Thu Apr 24 21:11:18 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_arm64_10) on jenkins, called using "codethink04-arm64 codethink03-arm64" as arguments. Thu Apr 24 21:11:18 UTC 2025 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-YImFO7pn" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Thu Apr 24 21:11:18 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink04-arm64.debian.net is marked as down. Thu Apr 24 21:11:18 UTC 2025 - checking via ssh if codethink04-arm64.debian.net is up. removed '/tmp/read-only-fs-test-SKFrT8' Thu Apr 24 21:11:19 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink03-arm64.debian.net is marked as down. Thu Apr 24 21:11:19 UTC 2025 - checking via ssh if codethink03-arm64.debian.net is up. removed '/tmp/read-only-fs-test-xQkjyF' ok, let's check if dazzdb is building anywhere yet… ok, dazzdb is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of dazzdb in unstable on arm64 on jenkins now. 1st build will be done on codethink04-arm64.debian.net. 2nd build will be done on codethink03-arm64.debian.net. ============================================================================= Thu Apr 24 21:11:21 UTC 2025 I: starting to build dazzdb/unstable/arm64 on jenkins on '2025-04-24 21:11' Thu Apr 24 21:11:21 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_10/68301/console.log 1745529081 arm64 unstable dazzdb Thu Apr 24 21:11:21 UTC 2025 I: Downloading source for unstable/dazzdb=1.0+git20250217.a3eefd4-1 --2025-04-24 21:11:21-- http://deb.debian.org/debian/pool/main/d/dazzdb/dazzdb_1.0%2bgit20250217.a3eefd4-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2296 (2.2K) [text/prs.lines.tag] Saving to: ‘dazzdb_1.0+git20250217.a3eefd4-1.dsc’ 0K .. 100% 397M=0s 2025-04-24 21:11:21 (397 MB/s) - ‘dazzdb_1.0+git20250217.a3eefd4-1.dsc’ saved [2296/2296] --2025-04-24 21:11:21-- http://deb.debian.org/debian/pool/main/d/dazzdb/dazzdb_1.0%2bgit20250217.a3eefd4-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2296 (2.2K) [text/prs.lines.tag] Saving to: ‘dazzdb_1.0+git20250217.a3eefd4-1.dsc’ 0K .. 100% 397M=0s 2025-04-24 21:11:21 (397 MB/s) - ‘dazzdb_1.0+git20250217.a3eefd4-1.dsc’ saved [2296/2296] Thu Apr 24 21:11:21 UTC 2025 I: dazzdb_1.0+git20250217.a3eefd4-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: dazzdb Binary: dazzdb Architecture: any Version: 1.0+git20250217.a3eefd4-1 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Pranav Ballaney , Étienne Mollier Homepage: https://github.com/thegenemyers/DAZZ_DB Standards-Version: 4.7.2 Vcs-Browser: https://salsa.debian.org/med-team/dazzdb Vcs-Git: https://salsa.debian.org/med-team/dazzdb.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), zlib1g-dev Package-List: dazzdb deb science optional arch=any Checksums-Sha1: b4cdfbdb7d71f7f90c68a07d68537afe4b0db38e 98972 dazzdb_1.0+git20250217.a3eefd4.orig.tar.xz 8c8c5d263f60101cc7bdd1a3e20af5e9cddc4849 7084 dazzdb_1.0+git20250217.a3eefd4-1.debian.tar.xz Checksums-Sha256: e82fa7ec6ceebef49762014c2f0a6790c9c274d21db7e448d2207e2be7c87f03 98972 dazzdb_1.0+git20250217.a3eefd4.orig.tar.xz e660c8e6770f48759892ce0f0d5a133219ef16bd2b90c148f20331f7b830f834 7084 dazzdb_1.0+git20250217.a3eefd4-1.debian.tar.xz Files: fe9b844e1f482407e7239ba25ce48a4f 98972 dazzdb_1.0+git20250217.a3eefd4.orig.tar.xz 87d032c55a20cbcc15e3af17850fbc22 7084 dazzdb_1.0+git20250217.a3eefd4-1.debian.tar.xz Dgit: 721a64452576405df420a29d8a841f3acfba6a66 debian archive/debian/1.0+git20250217.a3eefd4-1 https://git.dgit.debian.org/dazzdb -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmfDTS0UHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdpxQBAArO4JGd1hHK+H2zDEvxvZYo9omS9t hhDVddEgcj6ykSaf3YEKus0B1jWX4XP0rlYmdwsxy3S0IXm5Ux6jyAZG9yudjGNQ XsIceX+M7RuWbOzjAFQ3+1tqM++c/Ouq1nncpD0iz0Jc43SofXF51jbitSYkNVgS twvuUHXm95pnszPgXHO1dNGhOiApB59vwqx0QuJql57xdr4QUxPZCRRZ4HpahVVG HxcV/WjPPF4n8/N4YYALsrNYjgEBFYFaVwFZnpGB+3hOK7gFTdeEiN0OojidMXXL NuPh6qZqCcx7IpK2g/6MIXdfSE0fyydmLmJWC4uTtO8wlBhyAjiEqBXMwC+oj0Rb ZjSS5Kzda73PC8IvOkrKVmQ2p7XD6zFaNh4khaWWnRwZE0E/Ll5FG1qaMKm67yYo af1E7xZvxIXzlaZR3brsPb4vY7vaZTuQXm1OoAM3XOuVjyeF1sfFwC1SRZSIpr97 nx/oeB+5ZouUVE9JlYDbiMCemvwMUPkIPpzpJuAf3vnw0pkvtw5eb4kvprQvTYNA 4eQFlJkiiEpe4Z+FxHERsI4pKfgje4K39L8AE+NitXKJKRdW/9mA6YVJatrCJDXV o6MGtI2qYO5zSqcwWupzjHt4IW2nnLQvkw2+qtIaREgSCRbQ7ptz0gS6ibUNZ7s5 a9oSjXcIx5ACIMM= =B0IV -----END PGP SIGNATURE----- Thu Apr 24 21:11:21 UTC 2025 I: Checking whether the package is not for us Thu Apr 24 21:11:21 UTC 2025 I: Starting 1st build on remote node codethink04-arm64.debian.net. Thu Apr 24 21:11:21 UTC 2025 I: Preparing to do remote build '1' on codethink04-arm64.debian.net. Thu Apr 24 21:11:21 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink04-arm64.debian.net is marked as down. Thu Apr 24 21:11:21 UTC 2025 - checking via ssh if codethink04-arm64.debian.net is up. removed '/tmp/read-only-fs-test-xyoqXX' ==================================================================================== Thu Apr 24 21:11:22 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on codethink04-arm64, called using "1 dazzdb unstable /srv/reproducible-results/rbuild-debian/r-b-build.yZlb3NqG 1.0+git20250217.a3eefd4-1" as arguments. Thu Apr 24 21:11:22 UTC 2025 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-SGpEO1Hz" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Thu Apr 24 21:11:23 UTC 2025 I: Downloading source for unstable/dazzdb=1.0+git20250217.a3eefd4-1 Reading package lists... NOTICE: 'dazzdb' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/dazzdb.git Please use: git clone https://salsa.debian.org/med-team/dazzdb.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 108 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main dazzdb 1.0+git20250217.a3eefd4-1 (dsc) [2296 B] Get:2 http://deb.debian.org/debian unstable/main dazzdb 1.0+git20250217.a3eefd4-1 (tar) [99.0 kB] Get:3 http://deb.debian.org/debian unstable/main dazzdb 1.0+git20250217.a3eefd4-1 (diff) [7084 B] Fetched 108 kB in 0s (3713 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'dazzdb' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/dazzdb.git Please use: git clone https://salsa.debian.org/med-team/dazzdb.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 108 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main dazzdb 1.0+git20250217.a3eefd4-1 (dsc) [2296 B] Get:2 http://deb.debian.org/debian unstable/main dazzdb 1.0+git20250217.a3eefd4-1 (tar) [99.0 kB] Get:3 http://deb.debian.org/debian unstable/main dazzdb 1.0+git20250217.a3eefd4-1 (diff) [7084 B] Fetched 108 kB in 0s (3713 kB/s) Download complete and in download only mode ============================================================================= Building dazzdb in unstable on arm64 on codethink04-arm64 now. Date: Thu Apr 24 22:11:23 BST 2025 Date UTC: Thu Apr 24 21:11:23 UTC 2025 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Thu Apr 24 09:11:23 -12 2025 I: pbuilder-time-stamp: 1745529083 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [dazzdb_1.0+git20250217.a3eefd4-1.dsc] I: copying [./dazzdb_1.0+git20250217.a3eefd4.orig.tar.xz] I: copying [./dazzdb_1.0+git20250217.a3eefd4-1.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./dazzdb_1.0+git20250217.a3eefd4-1.dsc: unsupported subcommand dpkg-source: info: extracting dazzdb in dazzdb-1.0+git20250217.a3eefd4 dpkg-source: info: unpacking dazzdb_1.0+git20250217.a3eefd4.orig.tar.xz dpkg-source: info: unpacking dazzdb_1.0+git20250217.a3eefd4-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying append-cflags.patch dpkg-source: info: applying compiler-flags.patch dpkg-source: info: applying destdir.patch dpkg-source: info: applying use-after-free.patch dpkg-source: info: applying fix-declaration.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/4011415/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='1c4c6135c6364e76be74bc0d5b83e98e' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='4011415' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.yZlb3NqG/pbuilderrc_Cy8N --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.yZlb3NqG/b1 --logfile b1/build.log dazzdb_1.0+git20250217.a3eefd4-1.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink04-arm64 6.1.0-33-cloud-arm64 #1 SMP Debian 6.1.133-1 (2025-04-10) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Mar 4 11:20 /bin -> usr/bin I: user script /srv/workspace/pbuilder/4011415/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), zlib1g-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19953 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 30 newly installed, 0 to remove and 0 not upgraded. Need to get 11.8 MB of archives. After unpacking 46.0 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.25 [25.0 kB] Get: 2 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.46-5 [338 kB] Get: 3 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.46-5 [103 kB] Get: 4 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.46-5 [43.7 kB] Get: 5 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.23.1-1 [241 kB] Get: 6 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 7 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-7 [1129 kB] Get: 8 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.41-4 [93.9 kB] Get: 9 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 10 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 11 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.19-8 [285 kB] Get: 12 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3.1 [494 kB] Get: 13 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20240727.1 [60.2 kB] Get: 14 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.17-4 [862 kB] Get: 15 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.23.1-1 [770 kB] Get: 16 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.24.2 [90.9 kB] Get: 17 http://deb.debian.org/debian unstable/main arm64 libtool all 2.5.4-4 [539 kB] Get: 18 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 21 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 22 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 23 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 24 http://deb.debian.org/debian unstable/main arm64 libunistring5 arm64 1.3-2 [453 kB] Get: 25 http://deb.debian.org/debian unstable/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.4 [629 kB] Get: 26 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.23.1-1 [1610 kB] Get: 27 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 28 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.24.2 [919 kB] Get: 30 http://deb.debian.org/debian unstable/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Fetched 11.8 MB in 0s (109 MB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19953 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.25_all.deb ... Unpacking sensible-utils (0.0.25) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.46-5_arm64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../02-libmagic1t64_1%3a5.46-5_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.46-5_arm64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.23.1-1_arm64.deb ... Unpacking gettext-base (0.23.1-1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../05-libuchardet0_0.0.8-1+b2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-7_arm64.deb ... Unpacking groff-base (1.23.0-7) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.41-4_arm64.deb ... Unpacking bsdextrautils (2.41-4) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../08-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.0-1_arm64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-8_arm64.deb ... Unpacking m4 (1.4.19-8) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.17-4_all.deb ... Unpacking automake (1:1.17-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.23.1-1_all.deb ... Unpacking autopoint (0.23.1-1) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.24.2_all.deb ... Unpacking libdebhelper-perl (13.24.2) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.5.4-4_all.deb ... Unpacking libtool (2.5.4-4) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../19-libfile-stripnondeterminism-perl_1.14.1-2_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.1-2) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../20-dh-strip-nondeterminism_1.14.1-2_all.deb ... Unpacking dh-strip-nondeterminism (1.14.1-2) ... Selecting previously unselected package libelf1t64:arm64. Preparing to unpack .../21-libelf1t64_0.192-4_arm64.deb ... Unpacking libelf1t64:arm64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../22-dwz_0.15-1+b1_arm64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libunistring5:arm64. Preparing to unpack .../23-libunistring5_1.3-2_arm64.deb ... Unpacking libunistring5:arm64 (1.3-2) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../24-libxml2_2.12.7+dfsg+really2.9.14-0.4_arm64.deb ... Unpacking libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.4) ... Selecting previously unselected package gettext. Preparing to unpack .../25-gettext_0.23.1-1_arm64.deb ... Unpacking gettext (0.23.1-1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../26-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../27-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../28-debhelper_13.24.2_all.deb ... Unpacking debhelper (13.24.2) ... Selecting previously unselected package zlib1g-dev:arm64. Preparing to unpack .../29-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1+b1_arm64.deb ... Unpacking zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libpipeline1:arm64 (1.5.8-1) ... Setting up bsdextrautils (2.41-4) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.24.2) ... Setting up libmagic1t64:arm64 (1:5.46-5) ... Setting up gettext-base (0.23.1-1) ... Setting up m4 (1.4.19-8) ... Setting up file (1:5.46-5) ... Setting up libelf1t64:arm64 (0.192-4) ... Setting up autotools-dev (20240727.1) ... Setting up libunistring5:arm64 (1.3-2) ... Setting up autopoint (0.23.1-1) ... Setting up autoconf (2.72-3.1) ... Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.25) ... Setting up libuchardet0:arm64 (0.0.8-1+b2) ... Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.4) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up gettext (0.23.1-1) ... Setting up libtool (2.5.4-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up groff-base (1.23.0-7) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.24.2) ... Processing triggers for libc-bin (2.41-7) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/dazzdb-1.0+git20250217.a3eefd4/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../dazzdb_1.0+git20250217.a3eefd4-1_source.changes dpkg-buildpackage: info: source package dazzdb dpkg-buildpackage: info: source version 1.0+git20250217.a3eefd4-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_auto_clean make -j12 clean make[1]: Entering directory '/build/reproducible-path/dazzdb-1.0+git20250217.a3eefd4' rm -f fasta2DB DB2fasta quiva2DB DB2quiva DBsplit DBdust Catrack DBshow DBstats DBrm DBmv DBcp simulator fasta2DAM DAM2fasta rangen arrow2DB DB2arrow DBwipe DBtrim DB2ONE rm -fr *.dSYM rm -f dazz.db.tar.gz make[1]: Leaving directory '/build/reproducible-path/dazzdb-1.0+git20250217.a3eefd4' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure dh_auto_build make -j12 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/dazzdb-1.0+git20250217.a3eefd4' cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dazzdb-1.0+git20250217.a3eefd4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now fasta2DB.c DB.c DB.h QV.c QV.h -lm -lz -o fasta2DB cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dazzdb-1.0+git20250217.a3eefd4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now DB2fasta.c DB.c DB.h QV.c QV.h -lm -lz -o DB2fasta cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dazzdb-1.0+git20250217.a3eefd4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -DINTERACTIVE -Wl,-z,relro -Wl,-z,now quiva2DB.c DB.c DB.h QV.c QV.h -lm -lz -o quiva2DB cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dazzdb-1.0+git20250217.a3eefd4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now DB2quiva.c DB.c DB.h QV.c QV.h -lm -lz -o DB2quiva cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dazzdb-1.0+git20250217.a3eefd4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now DBsplit.c DB.c DB.h QV.c QV.h -lm -lz -o DBsplit cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dazzdb-1.0+git20250217.a3eefd4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now DBdust.c DB.c DB.h QV.c QV.h -lm -lz -o DBdust cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dazzdb-1.0+git20250217.a3eefd4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now Catrack.c DB.c DB.h QV.c QV.h -lm -lz -o Catrack cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dazzdb-1.0+git20250217.a3eefd4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now DBshow.c DB.c DB.h QV.c QV.h -lm -lz -o DBshow cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dazzdb-1.0+git20250217.a3eefd4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now DBstats.c DB.c DB.h QV.c QV.h -lm -lz -o DBstats cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dazzdb-1.0+git20250217.a3eefd4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now DBrm.c DB.c DB.h QV.c QV.h -lm -lz -o DBrm cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dazzdb-1.0+git20250217.a3eefd4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -DMOVE -Wl,-z,relro -Wl,-z,now DBmv.c DB.c DB.h QV.c QV.h -lm -lz -o DBmv cc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dazzdb-1.0+git20250217.a3eefd4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -o DBcp DBmv.c DB.c DB.h QV.c QV.h -lm -lz In file included from /usr/include/stdio.h:970, from fasta2DB.c:24: In function 'fprintf', inlined from 'main' at fasta2DB.c:438:15: /usr/include/aarch64-linux-gnu/bits/stdio2.h:111:10: warning: 'fname' may be used uninitialized [-Wmaybe-uninitialized] 111 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ fasta2DB.c: In function 'main': fasta2DB.c:363:29: note: 'fname' was declared here 363 | char *path, *core, *fname; | ^~~~~ cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dazzdb-1.0+git20250217.a3eefd4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now simulator.c DB.c DB.h QV.c QV.h -lm -lz -o simulator cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dazzdb-1.0+git20250217.a3eefd4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now fasta2DAM.c DB.c DB.h QV.c QV.h -lm -lz -o fasta2DAM cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dazzdb-1.0+git20250217.a3eefd4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now DAM2fasta.c DB.c DB.h QV.c QV.h -lm -lz -o DAM2fasta cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dazzdb-1.0+git20250217.a3eefd4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now rangen.c -o rangen cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dazzdb-1.0+git20250217.a3eefd4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now arrow2DB.c DB.c QV.c DB.h QV.h -lm -lz -o arrow2DB cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dazzdb-1.0+git20250217.a3eefd4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now DB2arrow.c DB.c QV.c DB.h QV.h -lm -lz -o DB2arrow cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dazzdb-1.0+git20250217.a3eefd4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now DBwipe.c DB.c DB.h QV.c QV.h -lm -lz -o DBwipe cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dazzdb-1.0+git20250217.a3eefd4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now DBtrim.c DB.c DB.h QV.c QV.h -lm -lz -o DBtrim In file included from /usr/include/stdio.h:970, from fasta2DAM.c:24: In function 'fprintf', inlined from 'main' at fasta2DAM.c:400:21: /usr/include/aarch64-linux-gnu/bits/stdio2.h:111:10: warning: 'fname' may be used uninitialized [-Wmaybe-uninitialized] 111 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ fasta2DAM.c: In function 'main': fasta2DAM.c:350:29: note: 'fname' was declared here 350 | char *path, *core, *fname; | ^~~~~ cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dazzdb-1.0+git20250217.a3eefd4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now DB2ONE.c DB.c DB.h QV.c QV.h ONElib.c ONElib.h -lm -lz -o DB2ONE ONElib.c: In function 'readBuf': ONElib.c:617:40: warning: comparison is always false due to limited range of data type [-Wtype-limits] 617 | if (isspace(x) || x == '\0' || x == EOF) | ^~ ONElib.c: In function 'readString': ONElib.c:665:32: warning: comparison is always false due to limited range of data type [-Wtype-limits] 665 | if (*cp == '\n' || *cp == EOF) | ^~ ONElib.c: In function 'readFlush': ONElib.c:696:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 696 | if (x == EOF) | ^~ ONElib.c: In function 'intGet': ONElib.c:3489:7: warning: this statement may fall through [-Wimplicit-fallthrough=] 3489 | switch (u[0] & 0x07) | ^~~~~~ ONElib.c:3500:5: note: here 3500 | case 4: | ^~~~ ONElib.c: In function 'ltfRead': ONElib.c:3565:10: warning: 'val' may be used uninitialized [-Wmaybe-uninitialized] 3565 | return val ; | ^~~ ONElib.c:3545:7: note: 'val' was declared here 3545 | I64 val ; | ^~~ make[1]: Leaving directory '/build/reproducible-path/dazzdb-1.0+git20250217.a3eefd4' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/dazzdb-1.0+git20250217.a3eefd4' dh_auto_install make -j12 install DESTDIR=/build/reproducible-path/dazzdb-1.0\+git20250217.a3eefd4/debian/dazzdb AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/dazzdb-1.0+git20250217.a3eefd4' install -d /build/reproducible-path/dazzdb-1.0+git20250217.a3eefd4/debian/dazzdb/usr/bin install fasta2DB DB2fasta quiva2DB DB2quiva DBsplit DBdust Catrack DBshow DBstats DBrm DBmv DBcp simulator fasta2DAM DAM2fasta rangen arrow2DB DB2arrow DBwipe DBtrim DB2ONE /build/reproducible-path/dazzdb-1.0+git20250217.a3eefd4/debian/dazzdb/usr/bin make[2]: Leaving directory '/build/reproducible-path/dazzdb-1.0+git20250217.a3eefd4' cd /build/reproducible-path/dazzdb-1.0+git20250217.a3eefd4/debian/dazzdb/usr/bin && mv simulator dsimulator mkdir -p /build/reproducible-path/dazzdb-1.0+git20250217.a3eefd4/debian/dazzdb/usr/share/man/man1 for command in /build/reproducible-path/dazzdb-1.0+git20250217.a3eefd4/debian/dazzdb/usr/bin/*; \ do \ ln -s dazzdb.1 \ /build/reproducible-path/dazzdb-1.0+git20250217.a3eefd4/debian/dazzdb/usr/share/man/man1/$(basename $command).1; \ done make[1]: Leaving directory '/build/reproducible-path/dazzdb-1.0+git20250217.a3eefd4' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'dazzdb' in '../dazzdb_1.0+git20250217.a3eefd4-1_arm64.deb'. dpkg-deb: building package 'dazzdb-dbgsym' in '../dazzdb-dbgsym_1.0+git20250217.a3eefd4-1_arm64.deb'. dpkg-genbuildinfo --build=binary -O../dazzdb_1.0+git20250217.a3eefd4-1_arm64.buildinfo dpkg-genchanges --build=binary -O../dazzdb_1.0+git20250217.a3eefd4-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/4011415 and its subdirectories I: Current time: Thu Apr 24 09:12:00 -12 2025 I: pbuilder-time-stamp: 1745529120 Thu Apr 24 21:12:00 UTC 2025 I: Signing ./b1/dazzdb_1.0+git20250217.a3eefd4-1_arm64.buildinfo as dazzdb_1.0+git20250217.a3eefd4-1_arm64.buildinfo.asc Thu Apr 24 21:12:01 UTC 2025 I: Signed ./b1/dazzdb_1.0+git20250217.a3eefd4-1_arm64.buildinfo as ./b1/dazzdb_1.0+git20250217.a3eefd4-1_arm64.buildinfo.asc Thu Apr 24 21:12:01 UTC 2025 - build #1 for dazzdb/unstable/arm64 on codethink04-arm64 done. Starting cleanup. All cleanup done. Thu Apr 24 21:12:01 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-SGpEO1Hz, removing. /srv/reproducible-results/rbuild-debian/r-b-build.yZlb3NqG: total 16 drwxr-xr-x 2 jenkins jenkins 4096 Apr 24 21:12 b1 drwxr-xr-x 2 jenkins jenkins 4096 Apr 24 21:11 b2 -rw-r--r-- 1 jenkins jenkins 2296 Mar 1 18:16 dazzdb_1.0+git20250217.a3eefd4-1.dsc -rw------- 1 jenkins jenkins 3491 Apr 24 21:11 rbuildlog.iQ2E9u4 /srv/reproducible-results/rbuild-debian/r-b-build.yZlb3NqG/b1: total 2136 -rw-r--r-- 1 jenkins jenkins 31181 Apr 24 21:12 build.log -rw-r--r-- 1 jenkins jenkins 1811684 Apr 24 21:12 dazzdb-dbgsym_1.0+git20250217.a3eefd4-1_arm64.deb -rw-r--r-- 1 jenkins jenkins 7084 Apr 24 21:12 dazzdb_1.0+git20250217.a3eefd4-1.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2296 Apr 24 21:12 dazzdb_1.0+git20250217.a3eefd4-1.dsc -rw-r--r-- 1 jenkins jenkins 5015 Apr 24 21:12 dazzdb_1.0+git20250217.a3eefd4-1_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 5897 Apr 24 21:12 dazzdb_1.0+git20250217.a3eefd4-1_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1578 Apr 24 21:12 dazzdb_1.0+git20250217.a3eefd4-1_arm64.changes -rw-r--r-- 1 jenkins jenkins 198820 Apr 24 21:12 dazzdb_1.0+git20250217.a3eefd4-1_arm64.deb -rw-r--r-- 1 jenkins jenkins 1750 Apr 24 21:12 dazzdb_1.0+git20250217.a3eefd4-1_source.changes -rw-r--r-- 1 jenkins jenkins 98972 Apr 24 21:12 dazzdb_1.0+git20250217.a3eefd4.orig.tar.xz /srv/reproducible-results/rbuild-debian/r-b-build.yZlb3NqG/b2: total 0 Thu Apr 24 21:12:02 UTC 2025 I: Deleting $TMPDIR on codethink04-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Apr 24 09:11:23 -12 2025 I: pbuilder-time-stamp: 1745529083 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [dazzdb_1.0+git20250217.a3eefd4-1.dsc] I: copying [./dazzdb_1.0+git20250217.a3eefd4.orig.tar.xz] I: copying [./dazzdb_1.0+git20250217.a3eefd4-1.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./dazzdb_1.0+git20250217.a3eefd4-1.dsc: unsupported subcommand dpkg-source: info: extracting dazzdb in dazzdb-1.0+git20250217.a3eefd4 dpkg-source: info: unpacking dazzdb_1.0+git20250217.a3eefd4.orig.tar.xz dpkg-source: info: unpacking dazzdb_1.0+git20250217.a3eefd4-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying append-cflags.patch dpkg-source: info: applying compiler-flags.patch dpkg-source: info: applying destdir.patch dpkg-source: info: applying use-after-free.patch dpkg-source: info: applying fix-declaration.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/4011415/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='1c4c6135c6364e76be74bc0d5b83e98e' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='4011415' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.yZlb3NqG/pbuilderrc_Cy8N --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.yZlb3NqG/b1 --logfile b1/build.log dazzdb_1.0+git20250217.a3eefd4-1.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink04-arm64 6.1.0-33-cloud-arm64 #1 SMP Debian 6.1.133-1 (2025-04-10) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Mar 4 11:20 /bin -> usr/bin I: user script /srv/workspace/pbuilder/4011415/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), zlib1g-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19953 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 30 newly installed, 0 to remove and 0 not upgraded. Need to get 11.8 MB of archives. After unpacking 46.0 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.25 [25.0 kB] Get: 2 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.46-5 [338 kB] Get: 3 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.46-5 [103 kB] Get: 4 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.46-5 [43.7 kB] Get: 5 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.23.1-1 [241 kB] Get: 6 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 7 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-7 [1129 kB] Get: 8 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.41-4 [93.9 kB] Get: 9 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 10 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 11 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.19-8 [285 kB] Get: 12 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3.1 [494 kB] Get: 13 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20240727.1 [60.2 kB] Get: 14 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.17-4 [862 kB] Get: 15 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.23.1-1 [770 kB] Get: 16 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.24.2 [90.9 kB] Get: 17 http://deb.debian.org/debian unstable/main arm64 libtool all 2.5.4-4 [539 kB] Get: 18 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 21 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 22 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 23 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 24 http://deb.debian.org/debian unstable/main arm64 libunistring5 arm64 1.3-2 [453 kB] Get: 25 http://deb.debian.org/debian unstable/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.4 [629 kB] Get: 26 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.23.1-1 [1610 kB] Get: 27 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 28 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.24.2 [919 kB] Get: 30 http://deb.debian.org/debian unstable/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Fetched 11.8 MB in 0s (109 MB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19953 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.25_all.deb ... Unpacking sensible-utils (0.0.25) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.46-5_arm64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../02-libmagic1t64_1%3a5.46-5_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.46-5_arm64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.23.1-1_arm64.deb ... Unpacking gettext-base (0.23.1-1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../05-libuchardet0_0.0.8-1+b2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-7_arm64.deb ... Unpacking groff-base (1.23.0-7) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.41-4_arm64.deb ... Unpacking bsdextrautils (2.41-4) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../08-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.0-1_arm64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-8_arm64.deb ... Unpacking m4 (1.4.19-8) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.17-4_all.deb ... Unpacking automake (1:1.17-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.23.1-1_all.deb ... Unpacking autopoint (0.23.1-1) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.24.2_all.deb ... Unpacking libdebhelper-perl (13.24.2) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.5.4-4_all.deb ... Unpacking libtool (2.5.4-4) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../19-libfile-stripnondeterminism-perl_1.14.1-2_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.1-2) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../20-dh-strip-nondeterminism_1.14.1-2_all.deb ... Unpacking dh-strip-nondeterminism (1.14.1-2) ... Selecting previously unselected package libelf1t64:arm64. Preparing to unpack .../21-libelf1t64_0.192-4_arm64.deb ... Unpacking libelf1t64:arm64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../22-dwz_0.15-1+b1_arm64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libunistring5:arm64. Preparing to unpack .../23-libunistring5_1.3-2_arm64.deb ... Unpacking libunistring5:arm64 (1.3-2) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../24-libxml2_2.12.7+dfsg+really2.9.14-0.4_arm64.deb ... Unpacking libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.4) ... Selecting previously unselected package gettext. Preparing to unpack .../25-gettext_0.23.1-1_arm64.deb ... Unpacking gettext (0.23.1-1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../26-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../27-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../28-debhelper_13.24.2_all.deb ... Unpacking debhelper (13.24.2) ... Selecting previously unselected package zlib1g-dev:arm64. Preparing to unpack .../29-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1+b1_arm64.deb ... Unpacking zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libpipeline1:arm64 (1.5.8-1) ... Setting up bsdextrautils (2.41-4) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.24.2) ... Setting up libmagic1t64:arm64 (1:5.46-5) ... Setting up gettext-base (0.23.1-1) ... Setting up m4 (1.4.19-8) ... Setting up file (1:5.46-5) ... Setting up libelf1t64:arm64 (0.192-4) ... Setting up autotools-dev (20240727.1) ... Setting up libunistring5:arm64 (1.3-2) ... Setting up autopoint (0.23.1-1) ... Setting up autoconf (2.72-3.1) ... Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.25) ... Setting up libuchardet0:arm64 (0.0.8-1+b2) ... Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.4) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up gettext (0.23.1-1) ... Setting up libtool (2.5.4-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up groff-base (1.23.0-7) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.24.2) ... Processing triggers for libc-bin (2.41-7) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/dazzdb-1.0+git20250217.a3eefd4/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../dazzdb_1.0+git20250217.a3eefd4-1_source.changes dpkg-buildpackage: info: source package dazzdb dpkg-buildpackage: info: source version 1.0+git20250217.a3eefd4-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_auto_clean make -j12 clean make[1]: Entering directory '/build/reproducible-path/dazzdb-1.0+git20250217.a3eefd4' rm -f fasta2DB DB2fasta quiva2DB DB2quiva DBsplit DBdust Catrack DBshow DBstats DBrm DBmv DBcp simulator fasta2DAM DAM2fasta rangen arrow2DB DB2arrow DBwipe DBtrim DB2ONE rm -fr *.dSYM rm -f dazz.db.tar.gz make[1]: Leaving directory '/build/reproducible-path/dazzdb-1.0+git20250217.a3eefd4' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure dh_auto_build make -j12 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/dazzdb-1.0+git20250217.a3eefd4' cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dazzdb-1.0+git20250217.a3eefd4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now fasta2DB.c DB.c DB.h QV.c QV.h -lm -lz -o fasta2DB cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dazzdb-1.0+git20250217.a3eefd4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now DB2fasta.c DB.c DB.h QV.c QV.h -lm -lz -o DB2fasta cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dazzdb-1.0+git20250217.a3eefd4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -DINTERACTIVE -Wl,-z,relro -Wl,-z,now quiva2DB.c DB.c DB.h QV.c QV.h -lm -lz -o quiva2DB cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dazzdb-1.0+git20250217.a3eefd4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now DB2quiva.c DB.c DB.h QV.c QV.h -lm -lz -o DB2quiva cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dazzdb-1.0+git20250217.a3eefd4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now DBsplit.c DB.c DB.h QV.c QV.h -lm -lz -o DBsplit cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dazzdb-1.0+git20250217.a3eefd4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now DBdust.c DB.c DB.h QV.c QV.h -lm -lz -o DBdust cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dazzdb-1.0+git20250217.a3eefd4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now Catrack.c DB.c DB.h QV.c QV.h -lm -lz -o Catrack cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dazzdb-1.0+git20250217.a3eefd4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now DBshow.c DB.c DB.h QV.c QV.h -lm -lz -o DBshow cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dazzdb-1.0+git20250217.a3eefd4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now DBstats.c DB.c DB.h QV.c QV.h -lm -lz -o DBstats cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dazzdb-1.0+git20250217.a3eefd4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now DBrm.c DB.c DB.h QV.c QV.h -lm -lz -o DBrm cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dazzdb-1.0+git20250217.a3eefd4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -DMOVE -Wl,-z,relro -Wl,-z,now DBmv.c DB.c DB.h QV.c QV.h -lm -lz -o DBmv cc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dazzdb-1.0+git20250217.a3eefd4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -o DBcp DBmv.c DB.c DB.h QV.c QV.h -lm -lz In file included from /usr/include/stdio.h:970, from fasta2DB.c:24: In function 'fprintf', inlined from 'main' at fasta2DB.c:438:15: /usr/include/aarch64-linux-gnu/bits/stdio2.h:111:10: warning: 'fname' may be used uninitialized [-Wmaybe-uninitialized] 111 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ fasta2DB.c: In function 'main': fasta2DB.c:363:29: note: 'fname' was declared here 363 | char *path, *core, *fname; | ^~~~~ cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dazzdb-1.0+git20250217.a3eefd4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now simulator.c DB.c DB.h QV.c QV.h -lm -lz -o simulator cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dazzdb-1.0+git20250217.a3eefd4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now fasta2DAM.c DB.c DB.h QV.c QV.h -lm -lz -o fasta2DAM cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dazzdb-1.0+git20250217.a3eefd4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now DAM2fasta.c DB.c DB.h QV.c QV.h -lm -lz -o DAM2fasta cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dazzdb-1.0+git20250217.a3eefd4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now rangen.c -o rangen cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dazzdb-1.0+git20250217.a3eefd4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now arrow2DB.c DB.c QV.c DB.h QV.h -lm -lz -o arrow2DB cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dazzdb-1.0+git20250217.a3eefd4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now DB2arrow.c DB.c QV.c DB.h QV.h -lm -lz -o DB2arrow cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dazzdb-1.0+git20250217.a3eefd4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now DBwipe.c DB.c DB.h QV.c QV.h -lm -lz -o DBwipe cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dazzdb-1.0+git20250217.a3eefd4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now DBtrim.c DB.c DB.h QV.c QV.h -lm -lz -o DBtrim In file included from /usr/include/stdio.h:970, from fasta2DAM.c:24: In function 'fprintf', inlined from 'main' at fasta2DAM.c:400:21: /usr/include/aarch64-linux-gnu/bits/stdio2.h:111:10: warning: 'fname' may be used uninitialized [-Wmaybe-uninitialized] 111 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ fasta2DAM.c: In function 'main': fasta2DAM.c:350:29: note: 'fname' was declared here 350 | char *path, *core, *fname; | ^~~~~ cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dazzdb-1.0+git20250217.a3eefd4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now DB2ONE.c DB.c DB.h QV.c QV.h ONElib.c ONElib.h -lm -lz -o DB2ONE ONElib.c: In function 'readBuf': ONElib.c:617:40: warning: comparison is always false due to limited range of data type [-Wtype-limits] 617 | if (isspace(x) || x == '\0' || x == EOF) | ^~ ONElib.c: In function 'readString': ONElib.c:665:32: warning: comparison is always false due to limited range of data type [-Wtype-limits] 665 | if (*cp == '\n' || *cp == EOF) | ^~ ONElib.c: In function 'readFlush': ONElib.c:696:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 696 | if (x == EOF) | ^~ ONElib.c: In function 'intGet': ONElib.c:3489:7: warning: this statement may fall through [-Wimplicit-fallthrough=] 3489 | switch (u[0] & 0x07) | ^~~~~~ ONElib.c:3500:5: note: here 3500 | case 4: | ^~~~ ONElib.c: In function 'ltfRead': ONElib.c:3565:10: warning: 'val' may be used uninitialized [-Wmaybe-uninitialized] 3565 | return val ; | ^~~ ONElib.c:3545:7: note: 'val' was declared here 3545 | I64 val ; | ^~~ make[1]: Leaving directory '/build/reproducible-path/dazzdb-1.0+git20250217.a3eefd4' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/dazzdb-1.0+git20250217.a3eefd4' dh_auto_install make -j12 install DESTDIR=/build/reproducible-path/dazzdb-1.0\+git20250217.a3eefd4/debian/dazzdb AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/dazzdb-1.0+git20250217.a3eefd4' install -d /build/reproducible-path/dazzdb-1.0+git20250217.a3eefd4/debian/dazzdb/usr/bin install fasta2DB DB2fasta quiva2DB DB2quiva DBsplit DBdust Catrack DBshow DBstats DBrm DBmv DBcp simulator fasta2DAM DAM2fasta rangen arrow2DB DB2arrow DBwipe DBtrim DB2ONE /build/reproducible-path/dazzdb-1.0+git20250217.a3eefd4/debian/dazzdb/usr/bin make[2]: Leaving directory '/build/reproducible-path/dazzdb-1.0+git20250217.a3eefd4' cd /build/reproducible-path/dazzdb-1.0+git20250217.a3eefd4/debian/dazzdb/usr/bin && mv simulator dsimulator mkdir -p /build/reproducible-path/dazzdb-1.0+git20250217.a3eefd4/debian/dazzdb/usr/share/man/man1 for command in /build/reproducible-path/dazzdb-1.0+git20250217.a3eefd4/debian/dazzdb/usr/bin/*; \ do \ ln -s dazzdb.1 \ /build/reproducible-path/dazzdb-1.0+git20250217.a3eefd4/debian/dazzdb/usr/share/man/man1/$(basename $command).1; \ done make[1]: Leaving directory '/build/reproducible-path/dazzdb-1.0+git20250217.a3eefd4' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'dazzdb' in '../dazzdb_1.0+git20250217.a3eefd4-1_arm64.deb'. dpkg-deb: building package 'dazzdb-dbgsym' in '../dazzdb-dbgsym_1.0+git20250217.a3eefd4-1_arm64.deb'. dpkg-genbuildinfo --build=binary -O../dazzdb_1.0+git20250217.a3eefd4-1_arm64.buildinfo dpkg-genchanges --build=binary -O../dazzdb_1.0+git20250217.a3eefd4-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/4011415 and its subdirectories I: Current time: Thu Apr 24 09:12:00 -12 2025 I: pbuilder-time-stamp: 1745529120 Thu Apr 24 21:12:02 UTC 2025 I: 1st build successful. Starting 2nd build on remote node codethink03-arm64.debian.net. Thu Apr 24 21:12:02 UTC 2025 I: Preparing to do remote build '2' on codethink03-arm64.debian.net. Thu Apr 24 21:12:02 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink03-arm64.debian.net is marked as down. Thu Apr 24 21:12:02 UTC 2025 - checking via ssh if codethink03-arm64.debian.net is up. removed '/tmp/read-only-fs-test-kLTt7O' ==================================================================================== Thu May 28 03:35:03 UTC 2026 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on codethink03-arm64, called using "2 dazzdb unstable /srv/reproducible-results/rbuild-debian/r-b-build.yZlb3NqG 1.0+git20250217.a3eefd4-1" as arguments. Thu May 28 03:35:03 UTC 2026 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-X1Yvtbw3" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Thu May 28 03:35:04 UTC 2026 I: Downloading source for unstable/dazzdb=1.0+git20250217.a3eefd4-1 Reading package lists... NOTICE: 'dazzdb' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/dazzdb.git Please use: git clone https://salsa.debian.org/med-team/dazzdb.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 108 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main dazzdb 1.0+git20250217.a3eefd4-1 (dsc) [2296 B] Get:2 http://deb.debian.org/debian unstable/main dazzdb 1.0+git20250217.a3eefd4-1 (tar) [99.0 kB] Get:3 http://deb.debian.org/debian unstable/main dazzdb 1.0+git20250217.a3eefd4-1 (diff) [7084 B] Fetched 108 kB in 0s (6617 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'dazzdb' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/dazzdb.git Please use: git clone https://salsa.debian.org/med-team/dazzdb.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 108 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main dazzdb 1.0+git20250217.a3eefd4-1 (dsc) [2296 B] Get:2 http://deb.debian.org/debian unstable/main dazzdb 1.0+git20250217.a3eefd4-1 (tar) [99.0 kB] Get:3 http://deb.debian.org/debian unstable/main dazzdb 1.0+git20250217.a3eefd4-1 (diff) [7084 B] Fetched 108 kB in 0s (6617 kB/s) Download complete and in download only mode ============================================================================= Re-Building dazzdb in unstable on arm64 on codethink03-arm64 now. Date: Thu May 28 04:35:04 BST 2026 Date UTC: Thu May 28 03:35:04 UTC 2026 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.yZlb3NqG + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.yZlb3NqG/pbuilderrc_7eNq + case ${ARCH} in + case $ARCH in + locale=nl_BE + language=nl + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' dazzdb = debian-installer -o dazzdb = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' dazzdb = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.yZlb3NqG/pbuilderrc_7eNq --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.yZlb3NqG/b2 --logfile b2/build.log dazzdb_1.0+git20250217.a3eefd4-1.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Thu May 28 17:35:04 +14 2026 I: pbuilder-time-stamp: 1779939304 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [dazzdb_1.0+git20250217.a3eefd4-1.dsc] I: copying [./dazzdb_1.0+git20250217.a3eefd4.orig.tar.xz] I: copying [./dazzdb_1.0+git20250217.a3eefd4-1.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./dazzdb_1.0+git20250217.a3eefd4-1.dsc: unsupported subcommand dpkg-source: info: extracting dazzdb in dazzdb-1.0+git20250217.a3eefd4 dpkg-source: info: unpacking dazzdb_1.0+git20250217.a3eefd4.orig.tar.xz dpkg-source: info: unpacking dazzdb_1.0+git20250217.a3eefd4-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying append-cflags.patch dpkg-source: info: applying compiler-flags.patch dpkg-source: info: applying destdir.patch dpkg-source: info: applying use-after-free.patch dpkg-source: info: applying fix-declaration.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/376679/tmp/hooks/D01_modify_environment starting debug: Running on codethink03-arm64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 May 28 03:35 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/376679/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/376679/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") BASH_VERSION='5.2.37(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=arm64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DIRSTACK=() DISTRIBUTION=unstable EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=aarch64 HOST_ARCH=arm64 IFS=' ' INVOCATION_ID=44972c14950e4f26882aca5cd0a53e00 LANG=C LANGUAGE=nl_BE:nl LC_ALL=C MACHTYPE=aarch64-unknown-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=376679 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.yZlb3NqG/pbuilderrc_7eNq --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.yZlb3NqG/b2 --logfile b2/build.log dazzdb_1.0+git20250217.a3eefd4-1.dsc' SUDO_GID=109 SUDO_UID=104 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://192.168.101.4:3128 I: uname -a Linux i-capture-the-hostname 6.1.0-33-cloud-arm64 #1 SMP Debian 6.1.133-1 (2025-04-10) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Mar 4 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/376679/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), zlib1g-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19953 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 30 newly installed, 0 to remove and 0 not upgraded. Need to get 11.8 MB of archives. After unpacking 46.0 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.25 [25.0 kB] Get: 2 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.46-5 [338 kB] Get: 3 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.46-5 [103 kB] Get: 4 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.46-5 [43.7 kB] Get: 5 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.23.1-1 [241 kB] Get: 6 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 7 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-7 [1129 kB] Get: 8 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.41-4 [93.9 kB] Get: 9 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 10 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 11 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.19-8 [285 kB] Get: 12 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3.1 [494 kB] Get: 13 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20240727.1 [60.2 kB] Get: 14 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.17-4 [862 kB] Get: 15 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.23.1-1 [770 kB] Get: 16 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.24.2 [90.9 kB] Get: 17 http://deb.debian.org/debian unstable/main arm64 libtool all 2.5.4-4 [539 kB] Get: 18 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 21 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 22 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 23 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 24 http://deb.debian.org/debian unstable/main arm64 libunistring5 arm64 1.3-2 [453 kB] Get: 25 http://deb.debian.org/debian unstable/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.4 [629 kB] Get: 26 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.23.1-1 [1610 kB] Get: 27 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 28 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.24.2 [919 kB] Get: 30 http://deb.debian.org/debian unstable/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Fetched 11.8 MB in 0s (45.6 MB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19953 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.25_all.deb ... Unpacking sensible-utils (0.0.25) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.46-5_arm64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../02-libmagic1t64_1%3a5.46-5_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.46-5_arm64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.23.1-1_arm64.deb ... Unpacking gettext-base (0.23.1-1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../05-libuchardet0_0.0.8-1+b2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-7_arm64.deb ... Unpacking groff-base (1.23.0-7) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.41-4_arm64.deb ... Unpacking bsdextrautils (2.41-4) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../08-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.0-1_arm64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-8_arm64.deb ... Unpacking m4 (1.4.19-8) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.17-4_all.deb ... Unpacking automake (1:1.17-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.23.1-1_all.deb ... Unpacking autopoint (0.23.1-1) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.24.2_all.deb ... Unpacking libdebhelper-perl (13.24.2) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.5.4-4_all.deb ... Unpacking libtool (2.5.4-4) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../19-libfile-stripnondeterminism-perl_1.14.1-2_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.1-2) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../20-dh-strip-nondeterminism_1.14.1-2_all.deb ... Unpacking dh-strip-nondeterminism (1.14.1-2) ... Selecting previously unselected package libelf1t64:arm64. Preparing to unpack .../21-libelf1t64_0.192-4_arm64.deb ... Unpacking libelf1t64:arm64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../22-dwz_0.15-1+b1_arm64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libunistring5:arm64. Preparing to unpack .../23-libunistring5_1.3-2_arm64.deb ... Unpacking libunistring5:arm64 (1.3-2) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../24-libxml2_2.12.7+dfsg+really2.9.14-0.4_arm64.deb ... Unpacking libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.4) ... Selecting previously unselected package gettext. Preparing to unpack .../25-gettext_0.23.1-1_arm64.deb ... Unpacking gettext (0.23.1-1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../26-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../27-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../28-debhelper_13.24.2_all.deb ... Unpacking debhelper (13.24.2) ... Selecting previously unselected package zlib1g-dev:arm64. Preparing to unpack .../29-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1+b1_arm64.deb ... Unpacking zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libpipeline1:arm64 (1.5.8-1) ... Setting up bsdextrautils (2.41-4) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.24.2) ... Setting up libmagic1t64:arm64 (1:5.46-5) ... Setting up gettext-base (0.23.1-1) ... Setting up m4 (1.4.19-8) ... Setting up file (1:5.46-5) ... Setting up libelf1t64:arm64 (0.192-4) ... Setting up autotools-dev (20240727.1) ... Setting up libunistring5:arm64 (1.3-2) ... Setting up autopoint (0.23.1-1) ... Setting up autoconf (2.72-3.1) ... Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.25) ... Setting up libuchardet0:arm64 (0.0.8-1+b2) ... Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.4) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up gettext (0.23.1-1) ... Setting up libtool (2.5.4-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up groff-base (1.23.0-7) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.24.2) ... Processing triggers for libc-bin (2.41-7) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/376679/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for unstable I: user script /srv/workspace/pbuilder/376679/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/dazzdb-1.0+git20250217.a3eefd4/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../dazzdb_1.0+git20250217.a3eefd4-1_source.changes dpkg-buildpackage: info: source package dazzdb dpkg-buildpackage: info: source version 1.0+git20250217.a3eefd4-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_auto_clean make -j12 clean make[1]: Entering directory '/build/reproducible-path/dazzdb-1.0+git20250217.a3eefd4' rm -f fasta2DB DB2fasta quiva2DB DB2quiva DBsplit DBdust Catrack DBshow DBstats DBrm DBmv DBcp simulator fasta2DAM DAM2fasta rangen arrow2DB DB2arrow DBwipe DBtrim DB2ONE rm -fr *.dSYM rm -f dazz.db.tar.gz make[1]: Leaving directory '/build/reproducible-path/dazzdb-1.0+git20250217.a3eefd4' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure dh_auto_build make -j12 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/dazzdb-1.0+git20250217.a3eefd4' cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dazzdb-1.0+git20250217.a3eefd4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now fasta2DB.c DB.c DB.h QV.c QV.h -lm -lz -o fasta2DB cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dazzdb-1.0+git20250217.a3eefd4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now DB2fasta.c DB.c DB.h QV.c QV.h -lm -lz -o DB2fasta cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dazzdb-1.0+git20250217.a3eefd4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -DINTERACTIVE -Wl,-z,relro -Wl,-z,now quiva2DB.c DB.c DB.h QV.c QV.h -lm -lz -o quiva2DB cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dazzdb-1.0+git20250217.a3eefd4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now DB2quiva.c DB.c DB.h QV.c QV.h -lm -lz -o DB2quiva cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dazzdb-1.0+git20250217.a3eefd4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now DBsplit.c DB.c DB.h QV.c QV.h -lm -lz -o DBsplit cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dazzdb-1.0+git20250217.a3eefd4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now DBdust.c DB.c DB.h QV.c QV.h -lm -lz -o DBdust cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dazzdb-1.0+git20250217.a3eefd4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now Catrack.c DB.c DB.h QV.c QV.h -lm -lz -o Catrack cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dazzdb-1.0+git20250217.a3eefd4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now DBshow.c DB.c DB.h QV.c QV.h -lm -lz -o DBshow cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dazzdb-1.0+git20250217.a3eefd4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now DBstats.c DB.c DB.h QV.c QV.h -lm -lz -o DBstats cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dazzdb-1.0+git20250217.a3eefd4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now DBrm.c DB.c DB.h QV.c QV.h -lm -lz -o DBrm cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dazzdb-1.0+git20250217.a3eefd4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -DMOVE -Wl,-z,relro -Wl,-z,now DBmv.c DB.c DB.h QV.c QV.h -lm -lz -o DBmv cc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dazzdb-1.0+git20250217.a3eefd4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -o DBcp DBmv.c DB.c DB.h QV.c QV.h -lm -lz In file included from /usr/include/stdio.h:970, from fasta2DB.c:24: In function 'fprintf', inlined from 'main' at fasta2DB.c:438:15: /usr/include/aarch64-linux-gnu/bits/stdio2.h:111:10: warning: 'fname' may be used uninitialized [-Wmaybe-uninitialized] 111 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ fasta2DB.c: In function 'main': fasta2DB.c:363:29: note: 'fname' was declared here 363 | char *path, *core, *fname; | ^~~~~ cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dazzdb-1.0+git20250217.a3eefd4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now simulator.c DB.c DB.h QV.c QV.h -lm -lz -o simulator cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dazzdb-1.0+git20250217.a3eefd4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now fasta2DAM.c DB.c DB.h QV.c QV.h -lm -lz -o fasta2DAM cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dazzdb-1.0+git20250217.a3eefd4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now DAM2fasta.c DB.c DB.h QV.c QV.h -lm -lz -o DAM2fasta In file included from /usr/include/stdio.h:970, from fasta2DAM.c:24: In function 'fprintf', inlined from 'main' at fasta2DAM.c:400:21: /usr/include/aarch64-linux-gnu/bits/stdio2.h:111:10: warning: 'fname' may be used uninitialized [-Wmaybe-uninitialized] 111 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ fasta2DAM.c: In function 'main': fasta2DAM.c:350:29: note: 'fname' was declared here 350 | char *path, *core, *fname; | ^~~~~ cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dazzdb-1.0+git20250217.a3eefd4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now rangen.c -o rangen cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dazzdb-1.0+git20250217.a3eefd4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now arrow2DB.c DB.c QV.c DB.h QV.h -lm -lz -o arrow2DB cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dazzdb-1.0+git20250217.a3eefd4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now DB2arrow.c DB.c QV.c DB.h QV.h -lm -lz -o DB2arrow cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dazzdb-1.0+git20250217.a3eefd4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now DBwipe.c DB.c DB.h QV.c QV.h -lm -lz -o DBwipe cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dazzdb-1.0+git20250217.a3eefd4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now DBtrim.c DB.c DB.h QV.c QV.h -lm -lz -o DBtrim cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dazzdb-1.0+git20250217.a3eefd4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now DB2ONE.c DB.c DB.h QV.c QV.h ONElib.c ONElib.h -lm -lz -o DB2ONE ONElib.c: In function 'readBuf': ONElib.c:617:40: warning: comparison is always false due to limited range of data type [-Wtype-limits] 617 | if (isspace(x) || x == '\0' || x == EOF) | ^~ ONElib.c: In function 'readString': ONElib.c:665:32: warning: comparison is always false due to limited range of data type [-Wtype-limits] 665 | if (*cp == '\n' || *cp == EOF) | ^~ ONElib.c: In function 'readFlush': ONElib.c:696:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 696 | if (x == EOF) | ^~ ONElib.c: In function 'intGet': ONElib.c:3489:7: warning: this statement may fall through [-Wimplicit-fallthrough=] 3489 | switch (u[0] & 0x07) | ^~~~~~ ONElib.c:3500:5: note: here 3500 | case 4: | ^~~~ ONElib.c: In function 'ltfRead': ONElib.c:3565:10: warning: 'val' may be used uninitialized [-Wmaybe-uninitialized] 3565 | return val ; | ^~~ ONElib.c:3545:7: note: 'val' was declared here 3545 | I64 val ; | ^~~ make[1]: Leaving directory '/build/reproducible-path/dazzdb-1.0+git20250217.a3eefd4' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/dazzdb-1.0+git20250217.a3eefd4' dh_auto_install make -j12 install DESTDIR=/build/reproducible-path/dazzdb-1.0\+git20250217.a3eefd4/debian/dazzdb AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/dazzdb-1.0+git20250217.a3eefd4' install -d /build/reproducible-path/dazzdb-1.0+git20250217.a3eefd4/debian/dazzdb/usr/bin install fasta2DB DB2fasta quiva2DB DB2quiva DBsplit DBdust Catrack DBshow DBstats DBrm DBmv DBcp simulator fasta2DAM DAM2fasta rangen arrow2DB DB2arrow DBwipe DBtrim DB2ONE /build/reproducible-path/dazzdb-1.0+git20250217.a3eefd4/debian/dazzdb/usr/bin make[2]: Leaving directory '/build/reproducible-path/dazzdb-1.0+git20250217.a3eefd4' cd /build/reproducible-path/dazzdb-1.0+git20250217.a3eefd4/debian/dazzdb/usr/bin && mv simulator dsimulator mkdir -p /build/reproducible-path/dazzdb-1.0+git20250217.a3eefd4/debian/dazzdb/usr/share/man/man1 for command in /build/reproducible-path/dazzdb-1.0+git20250217.a3eefd4/debian/dazzdb/usr/bin/*; \ do \ ln -s dazzdb.1 \ /build/reproducible-path/dazzdb-1.0+git20250217.a3eefd4/debian/dazzdb/usr/share/man/man1/$(basename $command).1; \ done make[1]: Leaving directory '/build/reproducible-path/dazzdb-1.0+git20250217.a3eefd4' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'dazzdb-dbgsym' in '../dazzdb-dbgsym_1.0+git20250217.a3eefd4-1_arm64.deb'. dpkg-deb: building package 'dazzdb' in '../dazzdb_1.0+git20250217.a3eefd4-1_arm64.deb'. dpkg-genbuildinfo --build=binary -O../dazzdb_1.0+git20250217.a3eefd4-1_arm64.buildinfo dpkg-genchanges --build=binary -O../dazzdb_1.0+git20250217.a3eefd4-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/376679/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/376679/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/376679 and its subdirectories I: Current time: Thu May 28 17:36:37 +14 2026 I: pbuilder-time-stamp: 1779939397 + false + set +x Thu May 28 03:36:37 UTC 2026 I: Signing ./b2/dazzdb_1.0+git20250217.a3eefd4-1_arm64.buildinfo as dazzdb_1.0+git20250217.a3eefd4-1_arm64.buildinfo.asc Thu May 28 03:36:37 UTC 2026 I: Signed ./b2/dazzdb_1.0+git20250217.a3eefd4-1_arm64.buildinfo as ./b2/dazzdb_1.0+git20250217.a3eefd4-1_arm64.buildinfo.asc Thu May 28 03:36:37 UTC 2026 - build #2 for dazzdb/unstable/arm64 on codethink03-arm64 done. Starting cleanup. All cleanup done. Thu May 28 03:36:37 UTC 2026 - reproducible_build.sh stopped running as /tmp/jenkins-script-X1Yvtbw3, removing. /srv/reproducible-results/rbuild-debian/r-b-build.yZlb3NqG: total 48 drwxr-xr-x 2 jenkins jenkins 4096 Apr 24 21:12 b1 drwxr-xr-x 2 jenkins jenkins 4096 Apr 24 21:13 b2 -rw-r--r-- 1 jenkins jenkins 2296 Mar 1 18:16 dazzdb_1.0+git20250217.a3eefd4-1.dsc -rw------- 1 jenkins jenkins 34973 Apr 24 21:12 rbuildlog.iQ2E9u4 /srv/reproducible-results/rbuild-debian/r-b-build.yZlb3NqG/b1: total 2148 -rw-r--r-- 1 jenkins jenkins 31181 Apr 24 21:12 build.log -rw-r--r-- 1 jenkins jenkins 1811684 Apr 24 21:12 dazzdb-dbgsym_1.0+git20250217.a3eefd4-1_arm64.deb -rw-r--r-- 1 jenkins jenkins 7084 Apr 24 21:12 dazzdb_1.0+git20250217.a3eefd4-1.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2296 Apr 24 21:12 dazzdb_1.0+git20250217.a3eefd4-1.dsc -rw-r--r-- 1 jenkins jenkins 5015 Apr 24 21:12 dazzdb_1.0+git20250217.a3eefd4-1_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 5897 Apr 24 21:12 dazzdb_1.0+git20250217.a3eefd4-1_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1578 Apr 24 21:12 dazzdb_1.0+git20250217.a3eefd4-1_arm64.changes -rw-r--r-- 1 jenkins jenkins 198820 Apr 24 21:12 dazzdb_1.0+git20250217.a3eefd4-1_arm64.deb -rw-r--r-- 1 jenkins jenkins 1750 Apr 24 21:12 dazzdb_1.0+git20250217.a3eefd4-1_source.changes -rw-r--r-- 1 jenkins jenkins 98972 Apr 24 21:12 dazzdb_1.0+git20250217.a3eefd4.orig.tar.xz /srv/reproducible-results/rbuild-debian/r-b-build.yZlb3NqG/b2: total 2140 -rw-r--r-- 1 jenkins jenkins 33117 Apr 24 21:13 build.log -rw-r--r-- 1 jenkins jenkins 1811684 Apr 24 21:13 dazzdb-dbgsym_1.0+git20250217.a3eefd4-1_arm64.deb -rw-r--r-- 1 jenkins jenkins 7084 Apr 24 21:13 dazzdb_1.0+git20250217.a3eefd4-1.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2296 Apr 24 21:13 dazzdb_1.0+git20250217.a3eefd4-1.dsc -rw-r--r-- 1 jenkins jenkins 5015 Apr 24 21:13 dazzdb_1.0+git20250217.a3eefd4-1_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 5897 Apr 24 21:13 dazzdb_1.0+git20250217.a3eefd4-1_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1578 Apr 24 21:13 dazzdb_1.0+git20250217.a3eefd4-1_arm64.changes -rw-r--r-- 1 jenkins jenkins 198820 Apr 24 21:13 dazzdb_1.0+git20250217.a3eefd4-1_arm64.deb -rw-r--r-- 1 jenkins jenkins 1750 Apr 24 21:13 dazzdb_1.0+git20250217.a3eefd4-1_source.changes -rw-r--r-- 1 jenkins jenkins 98972 Apr 24 21:13 dazzdb_1.0+git20250217.a3eefd4.orig.tar.xz Thu Apr 24 21:13:39 UTC 2025 I: Deleting $TMPDIR on codethink03-arm64.debian.net. Thu Apr 24 21:13:39 UTC 2025 I: dazzdb_1.0+git20250217.a3eefd4-1_arm64.changes: Format: 1.8 Date: Sat, 01 Mar 2025 18:39:27 +0100 Source: dazzdb Binary: dazzdb dazzdb-dbgsym Architecture: arm64 Version: 1.0+git20250217.a3eefd4-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: dazzdb - manage nucleotide sequencing read data Changes: dazzdb (1.0+git20250217.a3eefd4-1) unstable; urgency=medium . * New upstream version 1.0+git20250217.a3eefd4 * d/control: declare compliance to standards version 4.7.2. Checksums-Sha1: d71ec8cc868136cc0a752350f68ef816bf09bdc2 1811684 dazzdb-dbgsym_1.0+git20250217.a3eefd4-1_arm64.deb 361d7197d0d3a675f1b20dfc83f1989c48f6d333 5015 dazzdb_1.0+git20250217.a3eefd4-1_arm64.buildinfo 79e601c1171024b751bc134338ff33b16e418944 198820 dazzdb_1.0+git20250217.a3eefd4-1_arm64.deb Checksums-Sha256: f13e9486f65d02bd7a7928ee818abf95770f67bd9d005fdc0d4d2e71cc43e71d 1811684 dazzdb-dbgsym_1.0+git20250217.a3eefd4-1_arm64.deb 037a9a8a1bc699489c5c45e0222c50103ed6c2f7e5d9db27353acf5350d4d956 5015 dazzdb_1.0+git20250217.a3eefd4-1_arm64.buildinfo 7bbc924ba0a5860866b03b5f4c51c2acb3425f65e37786025995e650b94e80c0 198820 dazzdb_1.0+git20250217.a3eefd4-1_arm64.deb Files: 0841e6ba99a1cff623b76199f94d26a0 1811684 debug optional dazzdb-dbgsym_1.0+git20250217.a3eefd4-1_arm64.deb 5c7d71542edcf7c3fa48e6d246646581 5015 science optional dazzdb_1.0+git20250217.a3eefd4-1_arm64.buildinfo f18b76b4447da0c3d88d90d79cc86973 198820 science optional dazzdb_1.0+git20250217.a3eefd4-1_arm64.deb removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/dazzdb_1.0+git20250217.a3eefd4-1.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/dazzdb_1.0+git20250217.a3eefd4-1.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/arm64/dazzdb_1.0+git20250217.a3eefd4-1.build1.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/arm64/dazzdb_1.0+git20250217.a3eefd4-1.build2.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/buildinfo/unstable/arm64/dazzdb_1.0+git20250217.a3eefd4-1_arm64.buildinfo' removed '/var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/arm64/dazzdb_1.0+git20250217.a3eefd4-1.diff.gz' Diff of the two buildlogs: -- --- b1/build.log 2025-04-24 21:12:01.839003591 +0000 +++ b2/build.log 2025-04-24 21:13:38.900943306 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Thu Apr 24 09:11:23 -12 2025 -I: pbuilder-time-stamp: 1745529083 +I: Current time: Thu May 28 17:35:04 +14 2026 +I: pbuilder-time-stamp: 1779939304 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -28,52 +28,84 @@ dpkg-source: info: applying fix-declaration.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/4011415/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/376679/tmp/hooks/D01_modify_environment starting +debug: Running on codethink03-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 May 28 03:35 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/376679/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/376679/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='1c4c6135c6364e76be74bc0d5b83e98e' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='4011415' - PS1='# ' - PS2='> ' + INVOCATION_ID=44972c14950e4f26882aca5cd0a53e00 + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=376679 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.yZlb3NqG/pbuilderrc_Cy8N --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.yZlb3NqG/b1 --logfile b1/build.log dazzdb_1.0+git20250217.a3eefd4-1.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.yZlb3NqG/pbuilderrc_7eNq --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.yZlb3NqG/b2 --logfile b2/build.log dazzdb_1.0+git20250217.a3eefd4-1.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink04-arm64 6.1.0-33-cloud-arm64 #1 SMP Debian 6.1.133-1 (2025-04-10) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-33-cloud-arm64 #1 SMP Debian 6.1.133-1 (2025-04-10) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Mar 4 11:20 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/4011415/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Mar 4 2025 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/376679/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -141,7 +173,7 @@ Get: 28 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.24.2 [919 kB] Get: 30 http://deb.debian.org/debian unstable/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] -Fetched 11.8 MB in 0s (109 MB/s) +Fetched 11.8 MB in 0s (45.6 MB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19953 files and directories currently installed.) @@ -276,7 +308,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/dazzdb-1.0+git20250217.a3eefd4/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../dazzdb_1.0+git20250217.a3eefd4-1_source.changes +I: user script /srv/workspace/pbuilder/376679/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/376679/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/dazzdb-1.0+git20250217.a3eefd4/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../dazzdb_1.0+git20250217.a3eefd4-1_source.changes dpkg-buildpackage: info: source package dazzdb dpkg-buildpackage: info: source version 1.0+git20250217.a3eefd4-1 dpkg-buildpackage: info: source distribution unstable @@ -329,11 +365,6 @@ cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dazzdb-1.0+git20250217.a3eefd4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now simulator.c DB.c DB.h QV.c QV.h -lm -lz -o simulator cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dazzdb-1.0+git20250217.a3eefd4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now fasta2DAM.c DB.c DB.h QV.c QV.h -lm -lz -o fasta2DAM cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dazzdb-1.0+git20250217.a3eefd4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now DAM2fasta.c DB.c DB.h QV.c QV.h -lm -lz -o DAM2fasta -cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dazzdb-1.0+git20250217.a3eefd4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now rangen.c -o rangen -cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dazzdb-1.0+git20250217.a3eefd4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now arrow2DB.c DB.c QV.c DB.h QV.h -lm -lz -o arrow2DB -cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dazzdb-1.0+git20250217.a3eefd4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now DB2arrow.c DB.c QV.c DB.h QV.h -lm -lz -o DB2arrow -cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dazzdb-1.0+git20250217.a3eefd4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now DBwipe.c DB.c DB.h QV.c QV.h -lm -lz -o DBwipe -cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dazzdb-1.0+git20250217.a3eefd4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now DBtrim.c DB.c DB.h QV.c QV.h -lm -lz -o DBtrim In file included from /usr/include/stdio.h:970, from fasta2DAM.c:24: In function 'fprintf', @@ -347,6 +378,11 @@ fasta2DAM.c:350:29: note: 'fname' was declared here 350 | char *path, *core, *fname; | ^~~~~ +cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dazzdb-1.0+git20250217.a3eefd4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now rangen.c -o rangen +cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dazzdb-1.0+git20250217.a3eefd4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now arrow2DB.c DB.c QV.c DB.h QV.h -lm -lz -o arrow2DB +cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dazzdb-1.0+git20250217.a3eefd4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now DB2arrow.c DB.c QV.c DB.h QV.h -lm -lz -o DB2arrow +cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dazzdb-1.0+git20250217.a3eefd4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now DBwipe.c DB.c DB.h QV.c QV.h -lm -lz -o DBwipe +cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dazzdb-1.0+git20250217.a3eefd4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now DBtrim.c DB.c DB.h QV.c QV.h -lm -lz -o DBtrim cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/dazzdb-1.0+git20250217.a3eefd4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now DB2ONE.c DB.c DB.h QV.c QV.h ONElib.c ONElib.h -lm -lz -o DB2ONE ONElib.c: In function 'readBuf': ONElib.c:617:40: warning: comparison is always false due to limited range of data type [-Wtype-limits] @@ -415,8 +451,8 @@ dh_gencontrol dh_md5sums dh_builddeb -dpkg-deb: building package 'dazzdb' in '../dazzdb_1.0+git20250217.a3eefd4-1_arm64.deb'. dpkg-deb: building package 'dazzdb-dbgsym' in '../dazzdb-dbgsym_1.0+git20250217.a3eefd4-1_arm64.deb'. +dpkg-deb: building package 'dazzdb' in '../dazzdb_1.0+git20250217.a3eefd4-1_arm64.deb'. dpkg-genbuildinfo --build=binary -O../dazzdb_1.0+git20250217.a3eefd4-1_arm64.buildinfo dpkg-genchanges --build=binary -O../dazzdb_1.0+git20250217.a3eefd4-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -424,12 +460,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/376679/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/376679/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/4011415 and its subdirectories -I: Current time: Thu Apr 24 09:12:00 -12 2025 -I: pbuilder-time-stamp: 1745529120 +I: removing directory /srv/workspace/pbuilder/376679 and its subdirectories +I: Current time: Thu May 28 17:36:37 +14 2026 +I: pbuilder-time-stamp: 1779939397 Compressing the 2nd log... /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/arm64/dazzdb_1.0+git20250217.a3eefd4-1.diff: 76.3% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/arm64/dazzdb_1.0+git20250217.a3eefd4-1.diff.gz b2/build.log: 79.4% -- replaced with stdout Compressing the 1st log... b1/build.log: 80.4% -- replaced with stdout Thu Apr 24 21:13:40 UTC 2025 I: diffoscope 294 will be used to compare the two builds: ++ date -u +%s + DIFFOSCOPE_STAMP=/var/log/reproducible-builds/diffoscope_stamp_dazzdb_unstable_arm64_1745529220 + touch /var/log/reproducible-builds/diffoscope_stamp_dazzdb_unstable_arm64_1745529220 + RESULT=0 + systemd-run '--description=diffoscope on dazzdb/1.0+git20250217.a3eefd4-1 in unstable/arm64' --slice=rb-build-diffoscope.slice -u rb-diffoscope-arm64_10-68301 '--property=SuccessExitStatus=1 124' --user --send-sighup --pipe --wait -E TMPDIR timeout 155m nice schroot --directory /srv/reproducible-results/rbuild-debian/r-b-build.yZlb3NqG --run-session -c jenkins-reproducible-unstable-diffoscope-71ba4b58-68dd-4b54-9b32-507dfcbc82cb -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian/r-b-build.yZlb3NqG/dbd-tmp-rZdYv2f ; timeout 150m diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.yZlb3NqG/dazzdb_1.0+git20250217.a3eefd4-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.yZlb3NqG/dazzdb_1.0+git20250217.a3eefd4-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.yZlb3NqG/dazzdb_1.0+git20250217.a3eefd4-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.yZlb3NqG/b1/dazzdb_1.0+git20250217.a3eefd4-1_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.yZlb3NqG/b2/dazzdb_1.0+git20250217.a3eefd4-1_arm64.changes' + false + set +x Running as unit: rb-diffoscope-arm64_10-68301.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.yZlb3NqG/dazzdb_1.0+git20250217.a3eefd4-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.yZlb3NqG/dazzdb_1.0+git20250217.a3eefd4-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.yZlb3NqG/dazzdb_1.0+git20250217.a3eefd4-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.yZlb3NqG/b1/dazzdb_1.0+git20250217.a3eefd4-1_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.yZlb3NqG/b2/dazzdb_1.0+git20250217.a3eefd4-1_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 227ms CPU time consumed: 225ms _ _ _ __| | __ _ __________| | |__ / _` |/ _` |_ /_ / _` | '_ \ | (_| | (_| |/ / / / (_| | |_) | \__,_|\__,_/___/___\__,_|_.__/ Thu Apr 24 21:13:41 UTC 2025 I: diffoscope 294 found no differences in the changes files, and a .buildinfo file also exists. Thu Apr 24 21:13:41 UTC 2025 I: dazzdb from unstable built successfully and reproducibly on arm64. INSERT 0 1 INSERT 0 1 DELETE 1 [2025-04-24 21:13:41] INFO: Starting at 2025-04-24 21:13:41.852065 [2025-04-24 21:13:41] INFO: Generating the pages of 1 package(s) [2025-04-24 21:13:42] CRITICAL: https://tests.reproducible-builds.org/debian/unstable/arm64/dazzdb didn't produce a buildlog, even though it has been built. [2025-04-24 21:13:42] INFO: Finished at 2025-04-24 21:13:42.298139, took: 0:00:00.446081 Thu Apr 24 21:13:42 UTC 2025 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/unstable/arm64/dazzdb.html Thu Apr 24 21:13:42 UTC 2025 I: Submitting .buildinfo files to external archives: Thu Apr 24 21:13:42 UTC 2025 I: Submitting 8.0K b1/dazzdb_1.0+git20250217.a3eefd4-1_arm64.buildinfo.asc https://buildinfo.debian.net/361d7197d0d3a675f1b20dfc83f1989c48f6d333/dazzdb_1.0+git20250217.a3eefd4-1_arm64 Thu Apr 24 21:14:10 UTC 2025 I: Submitting 8.0K b2/dazzdb_1.0+git20250217.a3eefd4-1_arm64.buildinfo.asc https://buildinfo.debian.net/6cfd57753ba49a9c6baf55373af4e200acf40b14/dazzdb_1.0+git20250217.a3eefd4-1_arm64 Thu Apr 24 21:14:33 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Thu Apr 24 21:14:33 UTC 2025 I: Done submitting .buildinfo files. Thu Apr 24 21:14:33 UTC 2025 I: Removing signed dazzdb_1.0+git20250217.a3eefd4-1_arm64.buildinfo.asc files: removed './b1/dazzdb_1.0+git20250217.a3eefd4-1_arm64.buildinfo.asc' removed './b2/dazzdb_1.0+git20250217.a3eefd4-1_arm64.buildinfo.asc' 1745529273 arm64 unstable dazzdb Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/dazzdb_1.0+git20250217.a3eefd4-1.rbuild.log: 76.8% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/dazzdb_1.0+git20250217.a3eefd4-1.rbuild.log.gz [2025-04-24 21:14:34] INFO: Starting at 2025-04-24 21:14:34.059143 [2025-04-24 21:14:34] INFO: Generating the pages of 1 package(s) [2025-04-24 21:14:34] INFO: Finished at 2025-04-24 21:14:34.489998, took: 0:00:00.430862 All cleanup done. Thu Apr 24 21:14:34 UTC 2025 - total duration: 0h 2m 23s. Thu Apr 24 21:14:34 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-YImFO7pn, removing. Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 3min 16.024s CPU time consumed: 6.778s