Running as unit: rb-build-arm64_10-68804.service ==================================================================================== Sat Apr 26 17:15:48 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_arm64_10) on jenkins, called using "codethink04-arm64 codethink03-arm64" as arguments. Sat Apr 26 17:15:48 UTC 2025 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-mH8BQ6ld" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Sat Apr 26 17:15:48 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink04-arm64.debian.net is marked as down. Sat Apr 26 17:15:48 UTC 2025 - checking via ssh if codethink04-arm64.debian.net is up. removed '/tmp/read-only-fs-test-vhi9fm' Sat Apr 26 17:15:49 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink03-arm64.debian.net is marked as down. Sat Apr 26 17:15:49 UTC 2025 - checking via ssh if codethink03-arm64.debian.net is up. removed '/tmp/read-only-fs-test-6TJVUE' ok, let's check if grinder is building anywhere yet… ok, grinder is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of grinder in unstable on arm64 on jenkins now. 1st build will be done on codethink04-arm64.debian.net. 2nd build will be done on codethink03-arm64.debian.net. ============================================================================= Sat Apr 26 17:16:05 UTC 2025 I: starting to build grinder/unstable/arm64 on jenkins on '2025-04-26 17:15' Sat Apr 26 17:16:05 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_10/68804/console.log 1745687765 arm64 unstable grinder Sat Apr 26 17:16:05 UTC 2025 I: Downloading source for unstable/grinder=0.5.4-6 --2025-04-26 17:16:05-- http://deb.debian.org/debian/pool/main/g/grinder/grinder_0.5.4-6.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2103 (2.1K) [text/prs.lines.tag] Saving to: ‘grinder_0.5.4-6.dsc’ 0K .. 100% 279M=0s 2025-04-26 17:16:05 (279 MB/s) - ‘grinder_0.5.4-6.dsc’ saved [2103/2103] --2025-04-26 17:16:05-- http://deb.debian.org/debian/pool/main/g/grinder/grinder_0.5.4-6.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2103 (2.1K) [text/prs.lines.tag] Saving to: ‘grinder_0.5.4-6.dsc’ 0K .. 100% 279M=0s 2025-04-26 17:16:05 (279 MB/s) - ‘grinder_0.5.4-6.dsc’ saved [2103/2103] Sat Apr 26 17:16:05 UTC 2025 I: grinder_0.5.4-6.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: grinder Binary: grinder Architecture: all Version: 0.5.4-6 Maintainer: Debian Med Packaging Team Uploaders: Florent Angly , Andreas Tille Homepage: https://sourceforge.net/projects/biogrinder/ Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/grinder Vcs-Git: https://salsa.debian.org/med-team/grinder.git Testsuite: autopkgtest-pkg-perl Build-Depends: debhelper-compat (= 13) Build-Depends-Indep: libbio-perl-perl, libgetopt-euclid-perl, libmath-random-mt-perl, help2man Package-List: grinder deb science optional arch=all Checksums-Sha1: b2d1434bb080fe71075c30f1b0025b2496033c8f 162970 grinder_0.5.4.orig.tar.gz 4dfe81794c963458069b3b17e64ff5cade9dc867 5640 grinder_0.5.4-6.debian.tar.xz Checksums-Sha256: c34edcae59d1a461d354bae5e3798e98b42f6a31768585e598fe6bfa305c8fe4 162970 grinder_0.5.4.orig.tar.gz 29a9f4fa47d070085002e40730ffa4e4c84790634925968f304281972d26a8ab 5640 grinder_0.5.4-6.debian.tar.xz Files: 208730ac58a0db8feefd26297632d321 162970 grinder_0.5.4.orig.tar.gz 18200153ff9ae507d940b62e011e89a0 5640 grinder_0.5.4-6.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl/JIrIRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtEqgw//UV9VHJwGhmCaN384X1ec8ZQ3CKFEjHZc BxqauWI2f9PyGHAj1kehTlIfzjAbG7Z7SZMCDlKA/gcsmC1Bz3K2tFf4CMNK5OjG PcfBSonTtjQ1Q+hYIxjMIzCc7LuuMIfH4qgX9WLzCWzkx/sS1eaO6wKAU0Hhj51h rZraJFsKuPj1hDlElOtbBDFdo1yl/rKUNzEBK+kzyn1NsgGytRyt7h3Uw8E0Ts55 A6+e48a5hE5+5xR0nhAdEbOYfbefnB37LvFn0O3HznNI905tNMHkwk8wCzUBzvrg kFU0DKtkCpk1+MG2khswFWOyHLMsC0Al9unDeDjlofLLfq7Hfyq5W0IcE8D1/Hdy lqeLZ0u3dQoOVspZ+XhlQilLReN2iKVdSXugXgeRk7sgc11LeGjMjkWLLLadw4IM r345Bz5WMR6B1A7uY/GpSDffeFJkTF9M4fzWR9HUk7Lk5ILysTpn4pyrY9AQbJhq goRKz/HgauopAmPzsZRk3i1LNPhlzcqGtD+Z8dMzBJEWJSUQmdmr6HrFu+qELXnQ hKykeOmLyi1VTlM005Farm7YlrrNAu21AjuJdJZwc0ADk1jko2kaoQWHZAuhVkuD VONJ+2UXrcc4sBablfabsZrABq3MNMXMmViOytwYe71SzUd/txu5oTeyHku8cXHF tL4mQCnrssA= =VTfm -----END PGP SIGNATURE----- Sat Apr 26 17:16:05 UTC 2025 I: Checking whether the package is not for us Sat Apr 26 17:16:05 UTC 2025 I: Starting 1st build on remote node codethink04-arm64.debian.net. Sat Apr 26 17:16:05 UTC 2025 I: Preparing to do remote build '1' on codethink04-arm64.debian.net. Sat Apr 26 17:16:05 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink04-arm64.debian.net is marked as down. Sat Apr 26 17:16:05 UTC 2025 - checking via ssh if codethink04-arm64.debian.net is up. removed '/tmp/read-only-fs-test-ottkSA' ==================================================================================== Sat Apr 26 17:16:06 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on codethink04-arm64, called using "1 grinder unstable /srv/reproducible-results/rbuild-debian/r-b-build.WdmRkdzi 0.5.4-6" as arguments. Sat Apr 26 17:16:06 UTC 2025 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-oQ8FZlJL" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Sat Apr 26 17:16:06 UTC 2025 I: Downloading source for unstable/grinder=0.5.4-6 Reading package lists... NOTICE: 'grinder' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/grinder.git Please use: git clone https://salsa.debian.org/med-team/grinder.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 171 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main grinder 0.5.4-6 (dsc) [2103 B] Get:2 http://deb.debian.org/debian unstable/main grinder 0.5.4-6 (tar) [163 kB] Get:3 http://deb.debian.org/debian unstable/main grinder 0.5.4-6 (diff) [5640 B] Fetched 171 kB in 0s (1066 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'grinder' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/grinder.git Please use: git clone https://salsa.debian.org/med-team/grinder.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 171 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main grinder 0.5.4-6 (dsc) [2103 B] Get:2 http://deb.debian.org/debian unstable/main grinder 0.5.4-6 (tar) [163 kB] Get:3 http://deb.debian.org/debian unstable/main grinder 0.5.4-6 (diff) [5640 B] Fetched 171 kB in 0s (1066 kB/s) Download complete and in download only mode ============================================================================= Building grinder in unstable on arm64 on codethink04-arm64 now. Date: Sat Apr 26 18:16:07 BST 2025 Date UTC: Sat Apr 26 17:16:07 UTC 2025 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Sat Apr 26 05:16:07 -12 2025 I: pbuilder-time-stamp: 1745687767 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [grinder_0.5.4-6.dsc] I: copying [./grinder_0.5.4.orig.tar.gz] I: copying [./grinder_0.5.4-6.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./grinder_0.5.4-6.dsc: unsupported subcommand dpkg-source: info: extracting grinder in grinder-0.5.4 dpkg-source: info: unpacking grinder_0.5.4.orig.tar.gz dpkg-source: info: unpacking grinder_0.5.4-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying dot-in-inc.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3080560/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='68ff12cdd59740479c5c1bcd4ab48621' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3080560' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.WdmRkdzi/pbuilderrc_wfwl --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.WdmRkdzi/b1 --logfile b1/build.log grinder_0.5.4-6.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink04-arm64 6.1.0-33-cloud-arm64 #1 SMP Debian 6.1.133-1 (2025-04-10) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Mar 4 11:20 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3080560/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libbio-perl-perl, libgetopt-euclid-perl, libmath-random-mt-perl, help2man dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19953 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libbio-perl-perl; however: Package libbio-perl-perl is not installed. pbuilder-satisfydepends-dummy depends on libgetopt-euclid-perl; however: Package libgetopt-euclid-perl is not installed. pbuilder-satisfydepends-dummy depends on libmath-random-mt-perl; however: Package libmath-random-mt-perl is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} libarchive-zip-perl{a} libbio-perl-perl{a} libdata-stag-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libgetopt-euclid-perl{a} libio-string-perl{a} liblocale-gettext-perl{a} libmagic-mgc{a} libmagic1t64{a} libmath-random-mt-perl{a} libpipeline1{a} libpod-parser-perl{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: bioperl-run curl libace-perl libalgorithm-munkres-perl libarchive-cpio-perl libarray-compare-perl libbio-asn1-entrezgene-perl libbio-perl-run-perl libclone-perl libconvert-binary-c-perl libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libgd-perl libgraph-perl libgraphviz-perl libhtml-parser-perl libhtml-tableextract-perl liblist-moreutils-perl libltdl-dev libmail-sendmail-perl libmldbm-perl libpostscript-perl libset-scalar-perl libsoap-lite-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-graph-perl libsvg-perl liburi-perl libwww-perl libxml-dom-xpath-perl libxml-libxml-perl libxml-libxslt-perl libxml-parser-perl libxml-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libxml-writer-perl lynx perl-tk wget 0 packages upgraded, 37 newly installed, 0 to remove and 0 not upgraded. Need to get 14.3 MB of archives. After unpacking 55.4 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main arm64 liblocale-gettext-perl arm64 1.07-7+b1 [15.2 kB] Get: 2 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.25 [25.0 kB] Get: 3 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.46-5 [338 kB] Get: 4 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.46-5 [103 kB] Get: 5 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.46-5 [43.7 kB] Get: 6 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.23.1-1 [241 kB] Get: 7 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 8 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-7 [1129 kB] Get: 9 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.41-4 [93.9 kB] Get: 10 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 11 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 12 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.19-8 [285 kB] Get: 13 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3.1 [494 kB] Get: 14 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20240727.1 [60.2 kB] Get: 15 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.17-4 [862 kB] Get: 16 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.23.1-1 [770 kB] Get: 17 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.24.2 [90.9 kB] Get: 18 http://deb.debian.org/debian unstable/main arm64 libtool all 2.5.4-4 [539 kB] Get: 19 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 20 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 21 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 22 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 23 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 24 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 25 http://deb.debian.org/debian unstable/main arm64 libunistring5 arm64 1.3-2 [453 kB] Get: 26 http://deb.debian.org/debian unstable/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.4 [629 kB] Get: 27 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.23.1-1 [1610 kB] Get: 28 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 29 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 30 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.24.2 [919 kB] Get: 31 http://deb.debian.org/debian unstable/main arm64 help2man arm64 1.49.3+b1 [198 kB] Get: 32 http://deb.debian.org/debian unstable/main arm64 libio-string-perl all 1.08-4 [12.1 kB] Get: 33 http://deb.debian.org/debian unstable/main arm64 libdata-stag-perl all 0.14-3 [448 kB] Get: 34 http://deb.debian.org/debian unstable/main arm64 libbio-perl-perl all 1.7.8-1 [2603 kB] Get: 35 http://deb.debian.org/debian unstable/main arm64 libpod-parser-perl all 1.67-1 [94.1 kB] Get: 36 http://deb.debian.org/debian unstable/main arm64 libgetopt-euclid-perl all 0.4.8-1 [44.6 kB] Get: 37 http://deb.debian.org/debian unstable/main arm64 libmath-random-mt-perl arm64 1.17-2+b4 [13.9 kB] Fetched 14.3 MB in 0s (42.8 MB/s) Preconfiguring packages ... Selecting previously unselected package liblocale-gettext-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19953 files and directories currently installed.) Preparing to unpack .../00-liblocale-gettext-perl_1.07-7+b1_arm64.deb ... Unpacking liblocale-gettext-perl (1.07-7+b1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.25_all.deb ... Unpacking sensible-utils (0.0.25) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.46-5_arm64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../03-libmagic1t64_1%3a5.46-5_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.46-5_arm64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../05-gettext-base_0.23.1-1_arm64.deb ... Unpacking gettext-base (0.23.1-1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../06-libuchardet0_0.0.8-1+b2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../07-groff-base_1.23.0-7_arm64.deb ... Unpacking groff-base (1.23.0-7) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../08-bsdextrautils_2.41-4_arm64.deb ... Unpacking bsdextrautils (2.41-4) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../09-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../10-man-db_2.13.0-1_arm64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../11-m4_1.4.19-8_arm64.deb ... Unpacking m4 (1.4.19-8) ... Selecting previously unselected package autoconf. Preparing to unpack .../12-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../13-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../14-automake_1%3a1.17-4_all.deb ... Unpacking automake (1:1.17-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../15-autopoint_0.23.1-1_all.deb ... Unpacking autopoint (0.23.1-1) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../16-libdebhelper-perl_13.24.2_all.deb ... Unpacking libdebhelper-perl (13.24.2) ... Selecting previously unselected package libtool. Preparing to unpack .../17-libtool_2.5.4-4_all.deb ... Unpacking libtool (2.5.4-4) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../18-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../19-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.14.1-2_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.1-2) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../21-dh-strip-nondeterminism_1.14.1-2_all.deb ... Unpacking dh-strip-nondeterminism (1.14.1-2) ... Selecting previously unselected package libelf1t64:arm64. Preparing to unpack .../22-libelf1t64_0.192-4_arm64.deb ... Unpacking libelf1t64:arm64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../23-dwz_0.15-1+b1_arm64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libunistring5:arm64. Preparing to unpack .../24-libunistring5_1.3-2_arm64.deb ... Unpacking libunistring5:arm64 (1.3-2) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../25-libxml2_2.12.7+dfsg+really2.9.14-0.4_arm64.deb ... Unpacking libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.4) ... Selecting previously unselected package gettext. Preparing to unpack .../26-gettext_0.23.1-1_arm64.deb ... Unpacking gettext (0.23.1-1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../27-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../28-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../29-debhelper_13.24.2_all.deb ... Unpacking debhelper (13.24.2) ... Selecting previously unselected package help2man. Preparing to unpack .../30-help2man_1.49.3+b1_arm64.deb ... Unpacking help2man (1.49.3+b1) ... Selecting previously unselected package libio-string-perl. Preparing to unpack .../31-libio-string-perl_1.08-4_all.deb ... Unpacking libio-string-perl (1.08-4) ... Selecting previously unselected package libdata-stag-perl. Preparing to unpack .../32-libdata-stag-perl_0.14-3_all.deb ... Unpacking libdata-stag-perl (0.14-3) ... Selecting previously unselected package libbio-perl-perl. Preparing to unpack .../33-libbio-perl-perl_1.7.8-1_all.deb ... Unpacking libbio-perl-perl (1.7.8-1) ... Selecting previously unselected package libpod-parser-perl. Preparing to unpack .../34-libpod-parser-perl_1.67-1_all.deb ... Adding 'diversion of /usr/bin/podselect to /usr/bin/podselect.bundled by libpod-parser-perl' Adding 'diversion of /usr/share/man/man1/podselect.1.gz to /usr/share/man/man1/podselect.bundled.1.gz by libpod-parser-perl' Unpacking libpod-parser-perl (1.67-1) ... Selecting previously unselected package libgetopt-euclid-perl. Preparing to unpack .../35-libgetopt-euclid-perl_0.4.8-1_all.deb ... Unpacking libgetopt-euclid-perl (0.4.8-1) ... Selecting previously unselected package libmath-random-mt-perl. Preparing to unpack .../36-libmath-random-mt-perl_1.17-2+b4_arm64.deb ... Unpacking libmath-random-mt-perl (1.17-2+b4) ... Setting up libpipeline1:arm64 (1.5.8-1) ... Setting up bsdextrautils (2.41-4) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.24.2) ... Setting up libmagic1t64:arm64 (1:5.46-5) ... Setting up gettext-base (0.23.1-1) ... Setting up m4 (1.4.19-8) ... Setting up file (1:5.46-5) ... Setting up libmath-random-mt-perl (1.17-2+b4) ... Setting up libelf1t64:arm64 (0.192-4) ... Setting up libio-string-perl (1.08-4) ... Setting up autotools-dev (20240727.1) ... Setting up libunistring5:arm64 (1.3-2) ... Setting up libpod-parser-perl (1.67-1) ... Setting up autopoint (0.23.1-1) ... Setting up autoconf (2.72-3.1) ... Setting up libgetopt-euclid-perl (0.4.8-1) ... Setting up dwz (0.15-1+b1) ... Setting up libdata-stag-perl (0.14-3) ... Setting up sensible-utils (0.0.25) ... Setting up libuchardet0:arm64 (0.0.8-1+b2) ... Setting up libbio-perl-perl (1.7.8-1) ... Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.4) ... Setting up liblocale-gettext-perl (1.07-7+b1) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up gettext (0.23.1-1) ... Setting up libtool (2.5.4-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up help2man (1.49.3+b1) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up groff-base (1.23.0-7) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.24.2) ... Processing triggers for libc-bin (2.41-7) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/grinder-0.5.4/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../grinder_0.5.4-6_source.changes dpkg-buildpackage: info: source package grinder dpkg-buildpackage: info: source version 0.5.4-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/grinder-0.5.4' dh_auto_clean rm -rf debian/man if [ -d _disposal ] ; then \ if [ -e _disposal/MYMETA.yml ] ; then mv _disposal/MYMETA.yml . ; fi ; \ for pm in `cd _disposal ; find Bio -type f ; cd ..` ; do \ mv _disposal/${pm} lib/${pm} ; \ done ; \ fi rm -rf _disposal make[1]: Leaving directory '/build/reproducible-path/grinder-0.5.4' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/grinder-0.5.4' # MYMETA.yml will be changed and not reverted in clean target - use the chance to conserve it here mkdir _disposal cp -a MYMETA.yml _disposal dh_auto_configure /usr/bin/perl Makefile.PL INSTALLDIRS=vendor "OPTIMIZE=-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/grinder-0.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2" "LD=aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/grinder-0.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wl,-z,relro" Warning: prerequisite Test::Warn 0 not found. *** Module::AutoInstall version 1.16 *** Checking for Perl dependencies... [Core Features] - Test::More ...loaded. (1.302199) - Test::Warn ...missing. - Bio::Root::Version ...loaded. (1.7.8 >= 1.006923) - Bio::DB::Fasta ...loaded. (1.7.8) - Bio::Location::Split ...loaded. (1.7.8) - Bio::PrimarySeq ...loaded. (1.7.8) - Bio::Root::Root ...loaded. (1.7.8) - Bio::SeqIO ...loaded. (1.7.8) - Bio::SeqFeature::SubSeq ...loaded. (1.7.8) - Bio::Seq::SimulatedRead ...loaded. (1.7.8) - Bio::Tools::AmpliconSearch ...loaded. (1.7.8) - Getopt::Euclid ...loaded. (0.4.5 >= 0.4.4) - List::Util ...loaded. (1.63) - Math::Random::MT ...loaded. (1.17 >= 1.16) - version ...loaded. (0.9930 >= 0.77) *** Module::AutoInstall configuration finished. Checking if your kit is complete... Looks good Invalid LICENSE value 'gpl3' ignored Generating a Unix-style Makefile Writing Makefile for Grinder Writing MYMETA.yml and MYMETA.json *** Building doc... make[1]: Leaving directory '/build/reproducible-path/grinder-0.5.4' debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/grinder-0.5.4' mkdir -p debian/man echo "$MORE" > debian/man/more.1 PERL5LIB=lib help2man --no-discard-stderr --name 'Versatile omics shotgun and amplicon sequencing read simulator' --section 1 --version-string 0.5.4 --no-info --include debian/man/more.1 --output debian/man/grinder.1 bin/grinder help2man --no-discard-stderr --name 'Calculate the average genome size in Grinder libraries' --section 1 --version-string 0.5.4 --no-info --include debian/man/more.1 --output debian/man/average_genome_size.1 utils/average_genome_size help2man --no-discard-stderr --name 'Reverses the orientation of each paired\-end FASTA sequence' --section 1 --version-string 0.5.4 --no-info --include debian/man/more.1 --output debian/man/change_paired_read_orientation.1 utils/change_paired_read_orientation rm debian/man/more.1 dh_auto_build make -j12 make[2]: Entering directory '/build/reproducible-path/grinder-0.5.4' cp lib/Grinder.pm blib/lib/Grinder.pm cp lib/Grinder/Database.pm blib/lib/Grinder/Database.pm cp lib/Grinder/KmerCollection.pm blib/lib/Grinder/KmerCollection.pm cp utils/average_genome_size blib/script/average_genome_size cp utils/change_paired_read_orientation blib/script/change_paired_read_orientation cp bin/grinder blib/script/grinder "/usr/bin/perl" "-Iinc" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/average_genome_size "/usr/bin/perl" "-Iinc" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/change_paired_read_orientation "/usr/bin/perl" "-Iinc" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/grinder Manifying 2 pod documents Manifying 2 pod documents make[2]: Leaving directory '/build/reproducible-path/grinder-0.5.4' make[1]: Leaving directory '/build/reproducible-path/grinder-0.5.4' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/grinder-0.5.4' /usr/bin/make testdb TEST_FILE=t/00-load.t TESTDB_SW='' make[2]: Entering directory '/build/reproducible-path/grinder-0.5.4' PERL_DL_NONLAZY=1 "/usr/bin/perl" "-Iinc" "-Iblib/lib" "-Iblib/arch" t/00-load.t ok 1 - use Grinder; ok 2 - use Grinder::KmerCollection; ok 3 - use Grinder::Database; ok 4 - use t::TestUtils; # Testing Grinder 0.5.4, Perl 5.040001, /usr/bin/perl 1..4 make[2]: Leaving directory '/build/reproducible-path/grinder-0.5.4' make[1]: Leaving directory '/build/reproducible-path/grinder-0.5.4' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/grinder/ make -j12 install DESTDIR=/build/reproducible-path/grinder-0.5.4/debian/grinder AM_UPDATE_INFO_DIR=no PREFIX=/usr make[1]: Entering directory '/build/reproducible-path/grinder-0.5.4' Manifying 2 pod documents Manifying 2 pod documents Installing /build/reproducible-path/grinder-0.5.4/debian/grinder/usr/share/perl5/Grinder.pm Installing /build/reproducible-path/grinder-0.5.4/debian/grinder/usr/share/perl5/Grinder/KmerCollection.pm Installing /build/reproducible-path/grinder-0.5.4/debian/grinder/usr/share/perl5/Grinder/Database.pm Installing /build/reproducible-path/grinder-0.5.4/debian/grinder/usr/share/man/man1/change_paired_read_orientation.1p Installing /build/reproducible-path/grinder-0.5.4/debian/grinder/usr/share/man/man1/average_genome_size.1p Installing /build/reproducible-path/grinder-0.5.4/debian/grinder/usr/share/man/man3/Grinder::KmerCollection.3pm Installing /build/reproducible-path/grinder-0.5.4/debian/grinder/usr/share/man/man3/Grinder.3pm Installing /build/reproducible-path/grinder-0.5.4/debian/grinder/usr/bin/grinder Installing /build/reproducible-path/grinder-0.5.4/debian/grinder/usr/bin/average_genome_size Installing /build/reproducible-path/grinder-0.5.4/debian/grinder/usr/bin/change_paired_read_orientation make[1]: Leaving directory '/build/reproducible-path/grinder-0.5.4' debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/grinder-0.5.4' dh_install for pl in `grep -Rl '#!/usr/bin/env[[:space:]]\+perl' debian/*/usr/*` ; do \ sed -i '1s?^#!/usr/bin/env[[:space:]]\+perl?#!/usr/bin/perl?' ${pl} ; \ done make[1]: Leaving directory '/build/reproducible-path/grinder-0.5.4' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'grinder' in '../grinder_0.5.4-6_all.deb'. dpkg-genbuildinfo --build=binary -O../grinder_0.5.4-6_arm64.buildinfo dpkg-genchanges --build=binary -O../grinder_0.5.4-6_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3080560 and its subdirectories I: Current time: Sat Apr 26 05:16:45 -12 2025 I: pbuilder-time-stamp: 1745687805 Sat Apr 26 17:16:45 UTC 2025 I: Signing ./b1/grinder_0.5.4-6_arm64.buildinfo as grinder_0.5.4-6_arm64.buildinfo.asc Sat Apr 26 17:16:45 UTC 2025 I: Signed ./b1/grinder_0.5.4-6_arm64.buildinfo as ./b1/grinder_0.5.4-6_arm64.buildinfo.asc Sat Apr 26 17:16:45 UTC 2025 - build #1 for grinder/unstable/arm64 on codethink04-arm64 done. Starting cleanup. All cleanup done. Sat Apr 26 17:16:45 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-oQ8FZlJL, removing. /srv/reproducible-results/rbuild-debian/r-b-build.WdmRkdzi: total 16 drwxr-xr-x 2 jenkins jenkins 4096 Apr 26 17:16 b1 drwxr-xr-x 2 jenkins jenkins 4096 Apr 26 17:16 b2 -rw-r--r-- 1 jenkins jenkins 2103 Dec 3 2020 grinder_0.5.4-6.dsc -rw------- 1 jenkins jenkins 3213 Apr 26 17:16 rbuildlog.x0VmMWU /srv/reproducible-results/rbuild-debian/r-b-build.WdmRkdzi/b1: total 148 -rw-r--r-- 1 jenkins jenkins 27644 Apr 26 17:16 build.log -rw-r--r-- 1 jenkins jenkins 5640 Apr 26 17:16 grinder_0.5.4-6.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2103 Apr 26 17:16 grinder_0.5.4-6.dsc -rw-r--r-- 1 jenkins jenkins 83340 Apr 26 17:16 grinder_0.5.4-6_all.deb -rw-r--r-- 1 jenkins jenkins 4809 Apr 26 17:16 grinder_0.5.4-6_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 5691 Apr 26 17:16 grinder_0.5.4-6_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1272 Apr 26 17:16 grinder_0.5.4-6_arm64.changes -rw-r--r-- 1 jenkins jenkins 1418 Apr 26 17:16 grinder_0.5.4-6_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.WdmRkdzi/b2: total 0 Sat Apr 26 17:16:46 UTC 2025 I: Deleting $TMPDIR on codethink04-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sat Apr 26 05:16:07 -12 2025 I: pbuilder-time-stamp: 1745687767 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [grinder_0.5.4-6.dsc] I: copying [./grinder_0.5.4.orig.tar.gz] I: copying [./grinder_0.5.4-6.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./grinder_0.5.4-6.dsc: unsupported subcommand dpkg-source: info: extracting grinder in grinder-0.5.4 dpkg-source: info: unpacking grinder_0.5.4.orig.tar.gz dpkg-source: info: unpacking grinder_0.5.4-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying dot-in-inc.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3080560/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='68ff12cdd59740479c5c1bcd4ab48621' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3080560' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.WdmRkdzi/pbuilderrc_wfwl --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.WdmRkdzi/b1 --logfile b1/build.log grinder_0.5.4-6.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink04-arm64 6.1.0-33-cloud-arm64 #1 SMP Debian 6.1.133-1 (2025-04-10) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Mar 4 11:20 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3080560/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libbio-perl-perl, libgetopt-euclid-perl, libmath-random-mt-perl, help2man dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19953 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libbio-perl-perl; however: Package libbio-perl-perl is not installed. pbuilder-satisfydepends-dummy depends on libgetopt-euclid-perl; however: Package libgetopt-euclid-perl is not installed. pbuilder-satisfydepends-dummy depends on libmath-random-mt-perl; however: Package libmath-random-mt-perl is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} libarchive-zip-perl{a} libbio-perl-perl{a} libdata-stag-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libgetopt-euclid-perl{a} libio-string-perl{a} liblocale-gettext-perl{a} libmagic-mgc{a} libmagic1t64{a} libmath-random-mt-perl{a} libpipeline1{a} libpod-parser-perl{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: bioperl-run curl libace-perl libalgorithm-munkres-perl libarchive-cpio-perl libarray-compare-perl libbio-asn1-entrezgene-perl libbio-perl-run-perl libclone-perl libconvert-binary-c-perl libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libgd-perl libgraph-perl libgraphviz-perl libhtml-parser-perl libhtml-tableextract-perl liblist-moreutils-perl libltdl-dev libmail-sendmail-perl libmldbm-perl libpostscript-perl libset-scalar-perl libsoap-lite-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-graph-perl libsvg-perl liburi-perl libwww-perl libxml-dom-xpath-perl libxml-libxml-perl libxml-libxslt-perl libxml-parser-perl libxml-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libxml-writer-perl lynx perl-tk wget 0 packages upgraded, 37 newly installed, 0 to remove and 0 not upgraded. Need to get 14.3 MB of archives. After unpacking 55.4 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main arm64 liblocale-gettext-perl arm64 1.07-7+b1 [15.2 kB] Get: 2 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.25 [25.0 kB] Get: 3 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.46-5 [338 kB] Get: 4 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.46-5 [103 kB] Get: 5 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.46-5 [43.7 kB] Get: 6 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.23.1-1 [241 kB] Get: 7 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 8 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-7 [1129 kB] Get: 9 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.41-4 [93.9 kB] Get: 10 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 11 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 12 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.19-8 [285 kB] Get: 13 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3.1 [494 kB] Get: 14 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20240727.1 [60.2 kB] Get: 15 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.17-4 [862 kB] Get: 16 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.23.1-1 [770 kB] Get: 17 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.24.2 [90.9 kB] Get: 18 http://deb.debian.org/debian unstable/main arm64 libtool all 2.5.4-4 [539 kB] Get: 19 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 20 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 21 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 22 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 23 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 24 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 25 http://deb.debian.org/debian unstable/main arm64 libunistring5 arm64 1.3-2 [453 kB] Get: 26 http://deb.debian.org/debian unstable/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.4 [629 kB] Get: 27 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.23.1-1 [1610 kB] Get: 28 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 29 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 30 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.24.2 [919 kB] Get: 31 http://deb.debian.org/debian unstable/main arm64 help2man arm64 1.49.3+b1 [198 kB] Get: 32 http://deb.debian.org/debian unstable/main arm64 libio-string-perl all 1.08-4 [12.1 kB] Get: 33 http://deb.debian.org/debian unstable/main arm64 libdata-stag-perl all 0.14-3 [448 kB] Get: 34 http://deb.debian.org/debian unstable/main arm64 libbio-perl-perl all 1.7.8-1 [2603 kB] Get: 35 http://deb.debian.org/debian unstable/main arm64 libpod-parser-perl all 1.67-1 [94.1 kB] Get: 36 http://deb.debian.org/debian unstable/main arm64 libgetopt-euclid-perl all 0.4.8-1 [44.6 kB] Get: 37 http://deb.debian.org/debian unstable/main arm64 libmath-random-mt-perl arm64 1.17-2+b4 [13.9 kB] Fetched 14.3 MB in 0s (42.8 MB/s) Preconfiguring packages ... Selecting previously unselected package liblocale-gettext-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19953 files and directories currently installed.) Preparing to unpack .../00-liblocale-gettext-perl_1.07-7+b1_arm64.deb ... Unpacking liblocale-gettext-perl (1.07-7+b1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.25_all.deb ... Unpacking sensible-utils (0.0.25) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.46-5_arm64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../03-libmagic1t64_1%3a5.46-5_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.46-5_arm64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../05-gettext-base_0.23.1-1_arm64.deb ... Unpacking gettext-base (0.23.1-1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../06-libuchardet0_0.0.8-1+b2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../07-groff-base_1.23.0-7_arm64.deb ... Unpacking groff-base (1.23.0-7) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../08-bsdextrautils_2.41-4_arm64.deb ... Unpacking bsdextrautils (2.41-4) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../09-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../10-man-db_2.13.0-1_arm64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../11-m4_1.4.19-8_arm64.deb ... Unpacking m4 (1.4.19-8) ... Selecting previously unselected package autoconf. Preparing to unpack .../12-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../13-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../14-automake_1%3a1.17-4_all.deb ... Unpacking automake (1:1.17-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../15-autopoint_0.23.1-1_all.deb ... Unpacking autopoint (0.23.1-1) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../16-libdebhelper-perl_13.24.2_all.deb ... Unpacking libdebhelper-perl (13.24.2) ... Selecting previously unselected package libtool. Preparing to unpack .../17-libtool_2.5.4-4_all.deb ... Unpacking libtool (2.5.4-4) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../18-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../19-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.14.1-2_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.1-2) ... 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Selecting previously unselected package intltool-debian. Preparing to unpack .../27-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../28-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../29-debhelper_13.24.2_all.deb ... Unpacking debhelper (13.24.2) ... Selecting previously unselected package help2man. Preparing to unpack .../30-help2man_1.49.3+b1_arm64.deb ... Unpacking help2man (1.49.3+b1) ... Selecting previously unselected package libio-string-perl. Preparing to unpack .../31-libio-string-perl_1.08-4_all.deb ... Unpacking libio-string-perl (1.08-4) ... Selecting previously unselected package libdata-stag-perl. Preparing to unpack .../32-libdata-stag-perl_0.14-3_all.deb ... Unpacking libdata-stag-perl (0.14-3) ... Selecting previously unselected package libbio-perl-perl. Preparing to unpack .../33-libbio-perl-perl_1.7.8-1_all.deb ... Unpacking libbio-perl-perl (1.7.8-1) ... Selecting previously unselected package libpod-parser-perl. Preparing to unpack .../34-libpod-parser-perl_1.67-1_all.deb ... Adding 'diversion of /usr/bin/podselect to /usr/bin/podselect.bundled by libpod-parser-perl' Adding 'diversion of /usr/share/man/man1/podselect.1.gz to /usr/share/man/man1/podselect.bundled.1.gz by libpod-parser-perl' Unpacking libpod-parser-perl (1.67-1) ... Selecting previously unselected package libgetopt-euclid-perl. Preparing to unpack .../35-libgetopt-euclid-perl_0.4.8-1_all.deb ... Unpacking libgetopt-euclid-perl (0.4.8-1) ... Selecting previously unselected package libmath-random-mt-perl. Preparing to unpack .../36-libmath-random-mt-perl_1.17-2+b4_arm64.deb ... Unpacking libmath-random-mt-perl (1.17-2+b4) ... Setting up libpipeline1:arm64 (1.5.8-1) ... Setting up bsdextrautils (2.41-4) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.24.2) ... Setting up libmagic1t64:arm64 (1:5.46-5) ... Setting up gettext-base (0.23.1-1) ... Setting up m4 (1.4.19-8) ... Setting up file (1:5.46-5) ... Setting up libmath-random-mt-perl (1.17-2+b4) ... Setting up libelf1t64:arm64 (0.192-4) ... Setting up libio-string-perl (1.08-4) ... Setting up autotools-dev (20240727.1) ... Setting up libunistring5:arm64 (1.3-2) ... Setting up libpod-parser-perl (1.67-1) ... Setting up autopoint (0.23.1-1) ... Setting up autoconf (2.72-3.1) ... Setting up libgetopt-euclid-perl (0.4.8-1) ... Setting up dwz (0.15-1+b1) ... Setting up libdata-stag-perl (0.14-3) ... Setting up sensible-utils (0.0.25) ... Setting up libuchardet0:arm64 (0.0.8-1+b2) ... Setting up libbio-perl-perl (1.7.8-1) ... Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.4) ... Setting up liblocale-gettext-perl (1.07-7+b1) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up gettext (0.23.1-1) ... Setting up libtool (2.5.4-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up help2man (1.49.3+b1) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up groff-base (1.23.0-7) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.24.2) ... Processing triggers for libc-bin (2.41-7) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/grinder-0.5.4/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../grinder_0.5.4-6_source.changes dpkg-buildpackage: info: source package grinder dpkg-buildpackage: info: source version 0.5.4-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/grinder-0.5.4' dh_auto_clean rm -rf debian/man if [ -d _disposal ] ; then \ if [ -e _disposal/MYMETA.yml ] ; then mv _disposal/MYMETA.yml . ; fi ; \ for pm in `cd _disposal ; find Bio -type f ; cd ..` ; do \ mv _disposal/${pm} lib/${pm} ; \ done ; \ fi rm -rf _disposal make[1]: Leaving directory '/build/reproducible-path/grinder-0.5.4' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/grinder-0.5.4' # MYMETA.yml will be changed and not reverted in clean target - use the chance to conserve it here mkdir _disposal cp -a MYMETA.yml _disposal dh_auto_configure /usr/bin/perl Makefile.PL INSTALLDIRS=vendor "OPTIMIZE=-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/grinder-0.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2" "LD=aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/grinder-0.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wl,-z,relro" Warning: prerequisite Test::Warn 0 not found. *** Module::AutoInstall version 1.16 *** Checking for Perl dependencies... [Core Features] - Test::More ...loaded. (1.302199) - Test::Warn ...missing. - Bio::Root::Version ...loaded. (1.7.8 >= 1.006923) - Bio::DB::Fasta ...loaded. (1.7.8) - Bio::Location::Split ...loaded. (1.7.8) - Bio::PrimarySeq ...loaded. (1.7.8) - Bio::Root::Root ...loaded. (1.7.8) - Bio::SeqIO ...loaded. (1.7.8) - Bio::SeqFeature::SubSeq ...loaded. (1.7.8) - Bio::Seq::SimulatedRead ...loaded. (1.7.8) - Bio::Tools::AmpliconSearch ...loaded. (1.7.8) - Getopt::Euclid ...loaded. (0.4.5 >= 0.4.4) - List::Util ...loaded. (1.63) - Math::Random::MT ...loaded. (1.17 >= 1.16) - version ...loaded. (0.9930 >= 0.77) *** Module::AutoInstall configuration finished. Checking if your kit is complete... Looks good Invalid LICENSE value 'gpl3' ignored Generating a Unix-style Makefile Writing Makefile for Grinder Writing MYMETA.yml and MYMETA.json *** Building doc... make[1]: Leaving directory '/build/reproducible-path/grinder-0.5.4' debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/grinder-0.5.4' mkdir -p debian/man echo "$MORE" > debian/man/more.1 PERL5LIB=lib help2man --no-discard-stderr --name 'Versatile omics shotgun and amplicon sequencing read simulator' --section 1 --version-string 0.5.4 --no-info --include debian/man/more.1 --output debian/man/grinder.1 bin/grinder help2man --no-discard-stderr --name 'Calculate the average genome size in Grinder libraries' --section 1 --version-string 0.5.4 --no-info --include debian/man/more.1 --output debian/man/average_genome_size.1 utils/average_genome_size help2man --no-discard-stderr --name 'Reverses the orientation of each paired\-end FASTA sequence' --section 1 --version-string 0.5.4 --no-info --include debian/man/more.1 --output debian/man/change_paired_read_orientation.1 utils/change_paired_read_orientation rm debian/man/more.1 dh_auto_build make -j12 make[2]: Entering directory '/build/reproducible-path/grinder-0.5.4' cp lib/Grinder.pm blib/lib/Grinder.pm cp lib/Grinder/Database.pm blib/lib/Grinder/Database.pm cp lib/Grinder/KmerCollection.pm blib/lib/Grinder/KmerCollection.pm cp utils/average_genome_size blib/script/average_genome_size cp utils/change_paired_read_orientation blib/script/change_paired_read_orientation cp bin/grinder blib/script/grinder "/usr/bin/perl" "-Iinc" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/average_genome_size "/usr/bin/perl" "-Iinc" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/change_paired_read_orientation "/usr/bin/perl" "-Iinc" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/grinder Manifying 2 pod documents Manifying 2 pod documents make[2]: Leaving directory '/build/reproducible-path/grinder-0.5.4' make[1]: Leaving directory '/build/reproducible-path/grinder-0.5.4' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/grinder-0.5.4' /usr/bin/make testdb TEST_FILE=t/00-load.t TESTDB_SW='' make[2]: Entering directory '/build/reproducible-path/grinder-0.5.4' PERL_DL_NONLAZY=1 "/usr/bin/perl" "-Iinc" "-Iblib/lib" "-Iblib/arch" t/00-load.t ok 1 - use Grinder; ok 2 - use Grinder::KmerCollection; ok 3 - use Grinder::Database; ok 4 - use t::TestUtils; # Testing Grinder 0.5.4, Perl 5.040001, /usr/bin/perl 1..4 make[2]: Leaving directory '/build/reproducible-path/grinder-0.5.4' make[1]: Leaving directory '/build/reproducible-path/grinder-0.5.4' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/grinder/ make -j12 install DESTDIR=/build/reproducible-path/grinder-0.5.4/debian/grinder AM_UPDATE_INFO_DIR=no PREFIX=/usr make[1]: Entering directory '/build/reproducible-path/grinder-0.5.4' Manifying 2 pod documents Manifying 2 pod documents Installing /build/reproducible-path/grinder-0.5.4/debian/grinder/usr/share/perl5/Grinder.pm Installing /build/reproducible-path/grinder-0.5.4/debian/grinder/usr/share/perl5/Grinder/KmerCollection.pm Installing /build/reproducible-path/grinder-0.5.4/debian/grinder/usr/share/perl5/Grinder/Database.pm Installing /build/reproducible-path/grinder-0.5.4/debian/grinder/usr/share/man/man1/change_paired_read_orientation.1p Installing /build/reproducible-path/grinder-0.5.4/debian/grinder/usr/share/man/man1/average_genome_size.1p Installing /build/reproducible-path/grinder-0.5.4/debian/grinder/usr/share/man/man3/Grinder::KmerCollection.3pm Installing /build/reproducible-path/grinder-0.5.4/debian/grinder/usr/share/man/man3/Grinder.3pm Installing /build/reproducible-path/grinder-0.5.4/debian/grinder/usr/bin/grinder Installing /build/reproducible-path/grinder-0.5.4/debian/grinder/usr/bin/average_genome_size Installing /build/reproducible-path/grinder-0.5.4/debian/grinder/usr/bin/change_paired_read_orientation make[1]: Leaving directory '/build/reproducible-path/grinder-0.5.4' debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/grinder-0.5.4' dh_install for pl in `grep -Rl '#!/usr/bin/env[[:space:]]\+perl' debian/*/usr/*` ; do \ sed -i '1s?^#!/usr/bin/env[[:space:]]\+perl?#!/usr/bin/perl?' ${pl} ; \ done make[1]: Leaving directory '/build/reproducible-path/grinder-0.5.4' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'grinder' in '../grinder_0.5.4-6_all.deb'. dpkg-genbuildinfo --build=binary -O../grinder_0.5.4-6_arm64.buildinfo dpkg-genchanges --build=binary -O../grinder_0.5.4-6_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3080560 and its subdirectories I: Current time: Sat Apr 26 05:16:45 -12 2025 I: pbuilder-time-stamp: 1745687805 Sat Apr 26 17:16:47 UTC 2025 I: 1st build successful. Starting 2nd build on remote node codethink03-arm64.debian.net. Sat Apr 26 17:16:47 UTC 2025 I: Preparing to do remote build '2' on codethink03-arm64.debian.net. Sat Apr 26 17:16:47 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink03-arm64.debian.net is marked as down. Sat Apr 26 17:16:47 UTC 2025 - checking via ssh if codethink03-arm64.debian.net is up. removed '/tmp/read-only-fs-test-vHraZa' ==================================================================================== Fri May 29 23:39:49 UTC 2026 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on codethink03-arm64, called using "2 grinder unstable /srv/reproducible-results/rbuild-debian/r-b-build.WdmRkdzi 0.5.4-6" as arguments. Fri May 29 23:39:49 UTC 2026 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-zEtjR5p7" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Fri May 29 23:39:49 UTC 2026 I: Downloading source for unstable/grinder=0.5.4-6 Reading package lists... NOTICE: 'grinder' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/grinder.git Please use: git clone https://salsa.debian.org/med-team/grinder.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 171 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main grinder 0.5.4-6 (dsc) [2103 B] Get:2 http://deb.debian.org/debian unstable/main grinder 0.5.4-6 (tar) [163 kB] Get:3 http://deb.debian.org/debian unstable/main grinder 0.5.4-6 (diff) [5640 B] Fetched 171 kB in 0s (9123 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'grinder' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/grinder.git Please use: git clone https://salsa.debian.org/med-team/grinder.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 171 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main grinder 0.5.4-6 (dsc) [2103 B] Get:2 http://deb.debian.org/debian unstable/main grinder 0.5.4-6 (tar) [163 kB] Get:3 http://deb.debian.org/debian unstable/main grinder 0.5.4-6 (diff) [5640 B] Fetched 171 kB in 0s (9123 kB/s) Download complete and in download only mode ============================================================================= Re-Building grinder in unstable on arm64 on codethink03-arm64 now. Date: Sat May 30 00:39:49 BST 2026 Date UTC: Fri May 29 23:39:49 UTC 2026 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.WdmRkdzi + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.WdmRkdzi/pbuilderrc_4YfL + case ${ARCH} in + case $ARCH in + locale=nl_BE + language=nl + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' grinder = debian-installer -o grinder = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' grinder = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.WdmRkdzi/pbuilderrc_4YfL --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.WdmRkdzi/b2 --logfile b2/build.log grinder_0.5.4-6.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Sat May 30 13:39:49 +14 2026 I: pbuilder-time-stamp: 1780097989 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [grinder_0.5.4-6.dsc] I: copying [./grinder_0.5.4.orig.tar.gz] I: copying [./grinder_0.5.4-6.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./grinder_0.5.4-6.dsc: unsupported subcommand dpkg-source: info: extracting grinder in grinder-0.5.4 dpkg-source: info: unpacking grinder_0.5.4.orig.tar.gz dpkg-source: info: unpacking grinder_0.5.4-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying dot-in-inc.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1361350/tmp/hooks/D01_modify_environment starting debug: Running on codethink03-arm64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 May 29 23:39 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/1361350/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/1361350/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") BASH_VERSION='5.2.37(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=arm64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DIRSTACK=() DISTRIBUTION=unstable EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=aarch64 HOST_ARCH=arm64 IFS=' ' INVOCATION_ID=24e3c579c4eb4ed585184f5d6d2ff35b LANG=C LANGUAGE=nl_BE:nl LC_ALL=C MACHTYPE=aarch64-unknown-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=1361350 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.WdmRkdzi/pbuilderrc_4YfL --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.WdmRkdzi/b2 --logfile b2/build.log grinder_0.5.4-6.dsc' SUDO_GID=109 SUDO_UID=104 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://192.168.101.4:3128 I: uname -a Linux i-capture-the-hostname 6.1.0-33-cloud-arm64 #1 SMP Debian 6.1.133-1 (2025-04-10) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Mar 4 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1361350/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libbio-perl-perl, libgetopt-euclid-perl, libmath-random-mt-perl, help2man dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19953 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libbio-perl-perl; however: Package libbio-perl-perl is not installed. pbuilder-satisfydepends-dummy depends on libgetopt-euclid-perl; however: Package libgetopt-euclid-perl is not installed. pbuilder-satisfydepends-dummy depends on libmath-random-mt-perl; however: Package libmath-random-mt-perl is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} libarchive-zip-perl{a} libbio-perl-perl{a} libdata-stag-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libgetopt-euclid-perl{a} libio-string-perl{a} liblocale-gettext-perl{a} libmagic-mgc{a} libmagic1t64{a} libmath-random-mt-perl{a} libpipeline1{a} libpod-parser-perl{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: bioperl-run curl libace-perl libalgorithm-munkres-perl libarchive-cpio-perl libarray-compare-perl libbio-asn1-entrezgene-perl libbio-perl-run-perl libclone-perl libconvert-binary-c-perl libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libgd-perl libgraph-perl libgraphviz-perl libhtml-parser-perl libhtml-tableextract-perl liblist-moreutils-perl libltdl-dev libmail-sendmail-perl libmldbm-perl libpostscript-perl libset-scalar-perl libsoap-lite-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-graph-perl libsvg-perl liburi-perl libwww-perl libxml-dom-xpath-perl libxml-libxml-perl libxml-libxslt-perl libxml-parser-perl libxml-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libxml-writer-perl lynx perl-tk wget 0 packages upgraded, 37 newly installed, 0 to remove and 0 not upgraded. Need to get 14.3 MB of archives. After unpacking 55.4 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main arm64 liblocale-gettext-perl arm64 1.07-7+b1 [15.2 kB] Get: 2 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.25 [25.0 kB] Get: 3 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.46-5 [338 kB] Get: 4 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.46-5 [103 kB] Get: 5 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.46-5 [43.7 kB] Get: 6 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.23.1-1 [241 kB] Get: 7 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 8 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-7 [1129 kB] Get: 9 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.41-4 [93.9 kB] Get: 10 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 11 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 12 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.19-8 [285 kB] Get: 13 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3.1 [494 kB] Get: 14 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20240727.1 [60.2 kB] Get: 15 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.17-4 [862 kB] Get: 16 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.23.1-1 [770 kB] Get: 17 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.24.2 [90.9 kB] Get: 18 http://deb.debian.org/debian unstable/main arm64 libtool all 2.5.4-4 [539 kB] Get: 19 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 20 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 21 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 22 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 23 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 24 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 25 http://deb.debian.org/debian unstable/main arm64 libunistring5 arm64 1.3-2 [453 kB] Get: 26 http://deb.debian.org/debian unstable/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.4 [629 kB] Get: 27 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.23.1-1 [1610 kB] Get: 28 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 29 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 30 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.24.2 [919 kB] Get: 31 http://deb.debian.org/debian unstable/main arm64 help2man arm64 1.49.3+b1 [198 kB] Get: 32 http://deb.debian.org/debian unstable/main arm64 libio-string-perl all 1.08-4 [12.1 kB] Get: 33 http://deb.debian.org/debian unstable/main arm64 libdata-stag-perl all 0.14-3 [448 kB] Get: 34 http://deb.debian.org/debian unstable/main arm64 libbio-perl-perl all 1.7.8-1 [2603 kB] Get: 35 http://deb.debian.org/debian unstable/main arm64 libpod-parser-perl all 1.67-1 [94.1 kB] Get: 36 http://deb.debian.org/debian unstable/main arm64 libgetopt-euclid-perl all 0.4.8-1 [44.6 kB] Get: 37 http://deb.debian.org/debian unstable/main arm64 libmath-random-mt-perl arm64 1.17-2+b4 [13.9 kB] Fetched 14.3 MB in 0s (99.1 MB/s) Preconfiguring packages ... Selecting previously unselected package liblocale-gettext-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19953 files and directories currently installed.) Preparing to unpack .../00-liblocale-gettext-perl_1.07-7+b1_arm64.deb ... Unpacking liblocale-gettext-perl (1.07-7+b1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.25_all.deb ... Unpacking sensible-utils (0.0.25) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.46-5_arm64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../03-libmagic1t64_1%3a5.46-5_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.46-5_arm64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../05-gettext-base_0.23.1-1_arm64.deb ... Unpacking gettext-base (0.23.1-1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../06-libuchardet0_0.0.8-1+b2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../07-groff-base_1.23.0-7_arm64.deb ... Unpacking groff-base (1.23.0-7) ... Selecting previously unselected package bsdextrautils. 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Setting up libmagic-mgc (1:5.46-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.24.2) ... Setting up libmagic1t64:arm64 (1:5.46-5) ... Setting up gettext-base (0.23.1-1) ... Setting up m4 (1.4.19-8) ... Setting up file (1:5.46-5) ... Setting up libmath-random-mt-perl (1.17-2+b4) ... Setting up libelf1t64:arm64 (0.192-4) ... Setting up libio-string-perl (1.08-4) ... Setting up autotools-dev (20240727.1) ... Setting up libunistring5:arm64 (1.3-2) ... Setting up libpod-parser-perl (1.67-1) ... Setting up autopoint (0.23.1-1) ... Setting up autoconf (2.72-3.1) ... Setting up libgetopt-euclid-perl (0.4.8-1) ... Setting up dwz (0.15-1+b1) ... Setting up libdata-stag-perl (0.14-3) ... Setting up sensible-utils (0.0.25) ... Setting up libuchardet0:arm64 (0.0.8-1+b2) ... Setting up libbio-perl-perl (1.7.8-1) ... Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.4) ... Setting up liblocale-gettext-perl (1.07-7+b1) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up gettext (0.23.1-1) ... Setting up libtool (2.5.4-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up help2man (1.49.3+b1) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up groff-base (1.23.0-7) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.24.2) ... Processing triggers for libc-bin (2.41-7) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/1361350/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for unstable I: user script /srv/workspace/pbuilder/1361350/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/grinder-0.5.4/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../grinder_0.5.4-6_source.changes dpkg-buildpackage: info: source package grinder dpkg-buildpackage: info: source version 0.5.4-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/grinder-0.5.4' dh_auto_clean rm -rf debian/man if [ -d _disposal ] ; then \ if [ -e _disposal/MYMETA.yml ] ; then mv _disposal/MYMETA.yml . ; fi ; \ for pm in `cd _disposal ; find Bio -type f ; cd ..` ; do \ mv _disposal/${pm} lib/${pm} ; \ done ; \ fi rm -rf _disposal make[1]: Leaving directory '/build/reproducible-path/grinder-0.5.4' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/grinder-0.5.4' # MYMETA.yml will be changed and not reverted in clean target - use the chance to conserve it here mkdir _disposal cp -a MYMETA.yml _disposal dh_auto_configure /usr/bin/perl Makefile.PL INSTALLDIRS=vendor "OPTIMIZE=-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/grinder-0.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2" "LD=aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/grinder-0.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wl,-z,relro" Warning: prerequisite Test::Warn 0 not found. *** Module::AutoInstall version 1.16 *** Checking for Perl dependencies... [Core Features] - Test::More ...loaded. (1.302199) - Test::Warn ...missing. - Bio::Root::Version ...loaded. (1.7.8 >= 1.006923) - Bio::DB::Fasta ...loaded. (1.7.8) - Bio::Location::Split ...loaded. (1.7.8) - Bio::PrimarySeq ...loaded. (1.7.8) - Bio::Root::Root ...loaded. (1.7.8) - Bio::SeqIO ...loaded. (1.7.8) - Bio::SeqFeature::SubSeq ...loaded. (1.7.8) - Bio::Seq::SimulatedRead ...loaded. (1.7.8) - Bio::Tools::AmpliconSearch ...loaded. (1.7.8) - Getopt::Euclid ...loaded. (0.4.5 >= 0.4.4) - List::Util ...loaded. (1.63) - Math::Random::MT ...loaded. (1.17 >= 1.16) - version ...loaded. (0.9930 >= 0.77) *** Module::AutoInstall configuration finished. Checking if your kit is complete... Looks good Invalid LICENSE value 'gpl3' ignored Generating a Unix-style Makefile Writing Makefile for Grinder Writing MYMETA.yml and MYMETA.json *** Building doc... make[1]: Leaving directory '/build/reproducible-path/grinder-0.5.4' debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/grinder-0.5.4' mkdir -p debian/man echo "$MORE" > debian/man/more.1 PERL5LIB=lib help2man --no-discard-stderr --name 'Versatile omics shotgun and amplicon sequencing read simulator' --section 1 --version-string 0.5.4 --no-info --include debian/man/more.1 --output debian/man/grinder.1 bin/grinder help2man --no-discard-stderr --name 'Calculate the average genome size in Grinder libraries' --section 1 --version-string 0.5.4 --no-info --include debian/man/more.1 --output debian/man/average_genome_size.1 utils/average_genome_size help2man --no-discard-stderr --name 'Reverses the orientation of each paired\-end FASTA sequence' --section 1 --version-string 0.5.4 --no-info --include debian/man/more.1 --output debian/man/change_paired_read_orientation.1 utils/change_paired_read_orientation rm debian/man/more.1 dh_auto_build make -j12 make[2]: Entering directory '/build/reproducible-path/grinder-0.5.4' cp lib/Grinder.pm blib/lib/Grinder.pm cp lib/Grinder/KmerCollection.pm blib/lib/Grinder/KmerCollection.pm cp lib/Grinder/Database.pm blib/lib/Grinder/Database.pm cp utils/average_genome_size blib/script/average_genome_size cp utils/change_paired_read_orientation blib/script/change_paired_read_orientation cp bin/grinder blib/script/grinder "/usr/bin/perl" "-Iinc" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/average_genome_size "/usr/bin/perl" "-Iinc" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/change_paired_read_orientation "/usr/bin/perl" "-Iinc" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/grinder Manifying 2 pod documents Manifying 2 pod documents make[2]: Leaving directory '/build/reproducible-path/grinder-0.5.4' make[1]: Leaving directory '/build/reproducible-path/grinder-0.5.4' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/grinder-0.5.4' /usr/bin/make testdb TEST_FILE=t/00-load.t TESTDB_SW='' make[2]: Entering directory '/build/reproducible-path/grinder-0.5.4' PERL_DL_NONLAZY=1 "/usr/bin/perl" "-Iinc" "-Iblib/lib" "-Iblib/arch" t/00-load.t ok 1 - use Grinder; ok 2 - use Grinder::KmerCollection; ok 3 - use Grinder::Database; ok 4 - use t::TestUtils; # Testing Grinder 0.5.4, Perl 5.040001, /usr/bin/perl 1..4 make[2]: Leaving directory '/build/reproducible-path/grinder-0.5.4' make[1]: Leaving directory '/build/reproducible-path/grinder-0.5.4' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/grinder/ make -j12 install DESTDIR=/build/reproducible-path/grinder-0.5.4/debian/grinder AM_UPDATE_INFO_DIR=no PREFIX=/usr make[1]: Entering directory '/build/reproducible-path/grinder-0.5.4' Manifying 2 pod documents Manifying 2 pod documents Installing /build/reproducible-path/grinder-0.5.4/debian/grinder/usr/share/perl5/Grinder.pm Installing /build/reproducible-path/grinder-0.5.4/debian/grinder/usr/share/perl5/Grinder/Database.pm Installing /build/reproducible-path/grinder-0.5.4/debian/grinder/usr/share/perl5/Grinder/KmerCollection.pm Installing /build/reproducible-path/grinder-0.5.4/debian/grinder/usr/share/man/man1/change_paired_read_orientation.1p Installing /build/reproducible-path/grinder-0.5.4/debian/grinder/usr/share/man/man1/average_genome_size.1p Installing /build/reproducible-path/grinder-0.5.4/debian/grinder/usr/share/man/man3/Grinder::KmerCollection.3pm Installing /build/reproducible-path/grinder-0.5.4/debian/grinder/usr/share/man/man3/Grinder.3pm Installing /build/reproducible-path/grinder-0.5.4/debian/grinder/usr/bin/grinder Installing /build/reproducible-path/grinder-0.5.4/debian/grinder/usr/bin/change_paired_read_orientation Installing /build/reproducible-path/grinder-0.5.4/debian/grinder/usr/bin/average_genome_size make[1]: Leaving directory '/build/reproducible-path/grinder-0.5.4' debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/grinder-0.5.4' dh_install for pl in `grep -Rl '#!/usr/bin/env[[:space:]]\+perl' debian/*/usr/*` ; do \ sed -i '1s?^#!/usr/bin/env[[:space:]]\+perl?#!/usr/bin/perl?' ${pl} ; \ done make[1]: Leaving directory '/build/reproducible-path/grinder-0.5.4' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'grinder' in '../grinder_0.5.4-6_all.deb'. dpkg-genbuildinfo --build=binary -O../grinder_0.5.4-6_arm64.buildinfo dpkg-genchanges --build=binary -O../grinder_0.5.4-6_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/1361350/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/1361350/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1361350 and its subdirectories I: Current time: Sat May 30 13:40:31 +14 2026 I: pbuilder-time-stamp: 1780098031 + false + set +x Fri May 29 23:40:31 UTC 2026 I: Signing ./b2/grinder_0.5.4-6_arm64.buildinfo as grinder_0.5.4-6_arm64.buildinfo.asc Fri May 29 23:40:31 UTC 2026 I: Signed ./b2/grinder_0.5.4-6_arm64.buildinfo as ./b2/grinder_0.5.4-6_arm64.buildinfo.asc Fri May 29 23:40:31 UTC 2026 - build #2 for grinder/unstable/arm64 on codethink03-arm64 done. Starting cleanup. All cleanup done. Fri May 29 23:40:31 UTC 2026 - reproducible_build.sh stopped running as /tmp/jenkins-script-zEtjR5p7, removing. /srv/reproducible-results/rbuild-debian/r-b-build.WdmRkdzi: total 44 drwxr-xr-x 2 jenkins jenkins 4096 Apr 26 17:16 b1 drwxr-xr-x 2 jenkins jenkins 4096 Apr 26 17:17 b2 -rw-r--r-- 1 jenkins jenkins 2103 Dec 3 2020 grinder_0.5.4-6.dsc -rw------- 1 jenkins jenkins 31158 Apr 26 17:16 rbuildlog.x0VmMWU /srv/reproducible-results/rbuild-debian/r-b-build.WdmRkdzi/b1: total 152 -rw-r--r-- 1 jenkins jenkins 27644 Apr 26 17:16 build.log -rw-r--r-- 1 jenkins jenkins 5640 Apr 26 17:16 grinder_0.5.4-6.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2103 Apr 26 17:16 grinder_0.5.4-6.dsc -rw-r--r-- 1 jenkins jenkins 83340 Apr 26 17:16 grinder_0.5.4-6_all.deb -rw-r--r-- 1 jenkins jenkins 4809 Apr 26 17:16 grinder_0.5.4-6_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 5691 Apr 26 17:16 grinder_0.5.4-6_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1272 Apr 26 17:16 grinder_0.5.4-6_arm64.changes -rw-r--r-- 1 jenkins jenkins 1418 Apr 26 17:16 grinder_0.5.4-6_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.WdmRkdzi/b2: total 152 -rw-r--r-- 1 jenkins jenkins 29589 Apr 26 17:17 build.log -rw-r--r-- 1 jenkins jenkins 5640 Apr 26 17:17 grinder_0.5.4-6.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2103 Apr 26 17:17 grinder_0.5.4-6.dsc -rw-r--r-- 1 jenkins jenkins 83340 Apr 26 17:17 grinder_0.5.4-6_all.deb -rw-r--r-- 1 jenkins jenkins 4809 Apr 26 17:17 grinder_0.5.4-6_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 5691 Apr 26 17:17 grinder_0.5.4-6_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1272 Apr 26 17:17 grinder_0.5.4-6_arm64.changes -rw-r--r-- 1 jenkins jenkins 1418 Apr 26 17:17 grinder_0.5.4-6_source.changes Sat Apr 26 17:17:32 UTC 2025 I: Deleting $TMPDIR on codethink03-arm64.debian.net. Sat Apr 26 17:17:33 UTC 2025 I: grinder_0.5.4-6_arm64.changes: Format: 1.8 Date: Thu, 03 Dec 2020 17:41:21 +0100 Source: grinder Binary: grinder Architecture: all Version: 0.5.4-6 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: grinder - Versatile omics shotgun and amplicon sequencing read simulator Changes: grinder (0.5.4-6) unstable; urgency=medium . * Standards-Version: 4.5.1 (routine-update) * debhelper-compat 13 (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) * Set upstream metadata fields: Bug-Database, Repository. * watch file standard 4 (routine-update) Checksums-Sha1: 5256eb4dba5e4427f770dcf1ccaef3fa0b05c995 83340 grinder_0.5.4-6_all.deb bf36d122da8b0ee72e569c29a43d23d235a2ff74 4809 grinder_0.5.4-6_arm64.buildinfo Checksums-Sha256: a525c9ad00095f8e07a01f49de4408971a402141252af981db5dc49a210583db 83340 grinder_0.5.4-6_all.deb c9eb7ae298ee9f78bd1664f0a6be280e0ae3026eb97d65da4ecfe360239485f7 4809 grinder_0.5.4-6_arm64.buildinfo Files: c42b6c8c7bc4c77f32572beb1b5a7f1b 83340 science optional grinder_0.5.4-6_all.deb 13f5a81d759543bc3ccfc571a803c230 4809 science optional grinder_0.5.4-6_arm64.buildinfo removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/grinder_0.5.4-6.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/grinder_0.5.4-6.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/arm64/grinder_0.5.4-6.build1.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/arm64/grinder_0.5.4-6.build2.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/buildinfo/unstable/arm64/grinder_0.5.4-6_arm64.buildinfo' removed '/var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/arm64/grinder_0.5.4-6.diff.gz' Diff of the two buildlogs: -- --- b1/build.log 2025-04-26 17:16:46.446352015 +0000 +++ b2/build.log 2025-04-26 17:17:32.305369834 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sat Apr 26 05:16:07 -12 2025 -I: pbuilder-time-stamp: 1745687767 +I: Current time: Sat May 30 13:39:49 +14 2026 +I: pbuilder-time-stamp: 1780097989 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -24,52 +24,84 @@ dpkg-source: info: applying dot-in-inc.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/3080560/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/1361350/tmp/hooks/D01_modify_environment starting +debug: Running on codethink03-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 May 29 23:39 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/1361350/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/1361350/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='68ff12cdd59740479c5c1bcd4ab48621' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='3080560' - PS1='# ' - PS2='> ' + INVOCATION_ID=24e3c579c4eb4ed585184f5d6d2ff35b + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=1361350 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.WdmRkdzi/pbuilderrc_wfwl --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.WdmRkdzi/b1 --logfile b1/build.log grinder_0.5.4-6.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.WdmRkdzi/pbuilderrc_4YfL --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.WdmRkdzi/b2 --logfile b2/build.log grinder_0.5.4-6.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink04-arm64 6.1.0-33-cloud-arm64 #1 SMP Debian 6.1.133-1 (2025-04-10) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-33-cloud-arm64 #1 SMP Debian 6.1.133-1 (2025-04-10) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Mar 4 11:20 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/3080560/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Mar 4 2025 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/1361350/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -150,7 +182,7 @@ Get: 35 http://deb.debian.org/debian unstable/main arm64 libpod-parser-perl all 1.67-1 [94.1 kB] Get: 36 http://deb.debian.org/debian unstable/main arm64 libgetopt-euclid-perl all 0.4.8-1 [44.6 kB] Get: 37 http://deb.debian.org/debian unstable/main arm64 libmath-random-mt-perl arm64 1.17-2+b4 [13.9 kB] -Fetched 14.3 MB in 0s (42.8 MB/s) +Fetched 14.3 MB in 0s (99.1 MB/s) Preconfiguring packages ... Selecting previously unselected package liblocale-gettext-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19953 files and directories currently installed.) @@ -315,7 +347,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/grinder-0.5.4/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../grinder_0.5.4-6_source.changes +I: user script /srv/workspace/pbuilder/1361350/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/1361350/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/grinder-0.5.4/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../grinder_0.5.4-6_source.changes dpkg-buildpackage: info: source package grinder dpkg-buildpackage: info: source version 0.5.4-6 dpkg-buildpackage: info: source distribution unstable @@ -388,8 +424,8 @@ make -j12 make[2]: Entering directory '/build/reproducible-path/grinder-0.5.4' cp lib/Grinder.pm blib/lib/Grinder.pm -cp lib/Grinder/Database.pm blib/lib/Grinder/Database.pm cp lib/Grinder/KmerCollection.pm blib/lib/Grinder/KmerCollection.pm +cp lib/Grinder/Database.pm blib/lib/Grinder/Database.pm cp utils/average_genome_size blib/script/average_genome_size cp utils/change_paired_read_orientation blib/script/change_paired_read_orientation cp bin/grinder blib/script/grinder @@ -421,15 +457,15 @@ Manifying 2 pod documents Manifying 2 pod documents Installing /build/reproducible-path/grinder-0.5.4/debian/grinder/usr/share/perl5/Grinder.pm -Installing /build/reproducible-path/grinder-0.5.4/debian/grinder/usr/share/perl5/Grinder/KmerCollection.pm Installing /build/reproducible-path/grinder-0.5.4/debian/grinder/usr/share/perl5/Grinder/Database.pm +Installing /build/reproducible-path/grinder-0.5.4/debian/grinder/usr/share/perl5/Grinder/KmerCollection.pm Installing /build/reproducible-path/grinder-0.5.4/debian/grinder/usr/share/man/man1/change_paired_read_orientation.1p Installing /build/reproducible-path/grinder-0.5.4/debian/grinder/usr/share/man/man1/average_genome_size.1p Installing /build/reproducible-path/grinder-0.5.4/debian/grinder/usr/share/man/man3/Grinder::KmerCollection.3pm Installing /build/reproducible-path/grinder-0.5.4/debian/grinder/usr/share/man/man3/Grinder.3pm Installing /build/reproducible-path/grinder-0.5.4/debian/grinder/usr/bin/grinder -Installing /build/reproducible-path/grinder-0.5.4/debian/grinder/usr/bin/average_genome_size Installing /build/reproducible-path/grinder-0.5.4/debian/grinder/usr/bin/change_paired_read_orientation +Installing /build/reproducible-path/grinder-0.5.4/debian/grinder/usr/bin/average_genome_size make[1]: Leaving directory '/build/reproducible-path/grinder-0.5.4' debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/grinder-0.5.4' @@ -459,12 +495,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/1361350/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/1361350/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/3080560 and its subdirectories -I: Current time: Sat Apr 26 05:16:45 -12 2025 -I: pbuilder-time-stamp: 1745687805 +I: removing directory /srv/workspace/pbuilder/1361350 and its subdirectories +I: Current time: Sat May 30 13:40:31 +14 2026 +I: pbuilder-time-stamp: 1780098031 Compressing the 2nd log... /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/arm64/grinder_0.5.4-6.diff: 69.9% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/arm64/grinder_0.5.4-6.diff.gz b2/build.log: 74.7% -- replaced with stdout Compressing the 1st log... b1/build.log: 75.3% -- replaced with stdout Sat Apr 26 17:17:34 UTC 2025 I: diffoscope 294 will be used to compare the two builds: ++ date -u +%s + DIFFOSCOPE_STAMP=/var/log/reproducible-builds/diffoscope_stamp_grinder_unstable_arm64_1745687854 + touch /var/log/reproducible-builds/diffoscope_stamp_grinder_unstable_arm64_1745687854 + RESULT=0 + systemd-run '--description=diffoscope on grinder/0.5.4-6 in unstable/arm64' --slice=rb-build-diffoscope.slice -u rb-diffoscope-arm64_10-68804 '--property=SuccessExitStatus=1 124' --user --send-sighup --pipe --wait -E TMPDIR timeout 155m nice schroot --directory /srv/reproducible-results/rbuild-debian/r-b-build.WdmRkdzi --run-session -c jenkins-reproducible-unstable-diffoscope-d3afcf25-1b72-4be1-ae97-6f3077c738fb -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian/r-b-build.WdmRkdzi/dbd-tmp-k5EEvcl ; timeout 150m diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.WdmRkdzi/grinder_0.5.4-6.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.WdmRkdzi/grinder_0.5.4-6.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.WdmRkdzi/grinder_0.5.4-6.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.WdmRkdzi/b1/grinder_0.5.4-6_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.WdmRkdzi/b2/grinder_0.5.4-6_arm64.changes' + false + set +x Running as unit: rb-diffoscope-arm64_10-68804.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.WdmRkdzi/grinder_0.5.4-6.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.WdmRkdzi/grinder_0.5.4-6.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.WdmRkdzi/grinder_0.5.4-6.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.WdmRkdzi/b1/grinder_0.5.4-6_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.WdmRkdzi/b2/grinder_0.5.4-6_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.006s) 0.006s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 325ms CPU time consumed: 313ms _ _ __ _ _ __(_)_ __ __| | ___ _ __ / _` | '__| | '_ \ / _` |/ _ \ '__| | (_| | | | | | | | (_| | __/ | \__, |_| |_|_| |_|\__,_|\___|_| |___/ Sat Apr 26 17:17:35 UTC 2025 I: diffoscope 294 found no differences in the changes files, and a .buildinfo file also exists. Sat Apr 26 17:17:35 UTC 2025 I: grinder from unstable built successfully and reproducibly on arm64. INSERT 0 1 INSERT 0 1 DELETE 1 [2025-04-26 17:17:36] INFO: Starting at 2025-04-26 17:17:36.025466 [2025-04-26 17:17:36] INFO: Generating the pages of 1 package(s) [2025-04-26 17:17:36] CRITICAL: https://tests.reproducible-builds.org/debian/unstable/arm64/grinder didn't produce a buildlog, even though it has been built. [2025-04-26 17:17:36] INFO: Finished at 2025-04-26 17:17:36.491130, took: 0:00:00.465670 Sat Apr 26 17:17:36 UTC 2025 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/unstable/arm64/grinder.html Sat Apr 26 17:17:36 UTC 2025 I: Submitting .buildinfo files to external archives: Sat Apr 26 17:17:36 UTC 2025 I: Submitting 8.0K b1/grinder_0.5.4-6_arm64.buildinfo.asc https://buildinfo.debian.net/bf36d122da8b0ee72e569c29a43d23d235a2ff74/grinder_0.5.4-6_all Sat Apr 26 17:17:56 UTC 2025 I: Submitting 8.0K b2/grinder_0.5.4-6_arm64.buildinfo.asc https://buildinfo.debian.net/6e671941e852bf7348f780c5d54b7669e6f11f6d/grinder_0.5.4-6_all Sat Apr 26 17:18:22 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sat Apr 26 17:18:22 UTC 2025 I: Done submitting .buildinfo files. Sat Apr 26 17:18:22 UTC 2025 I: Removing signed grinder_0.5.4-6_arm64.buildinfo.asc files: removed './b1/grinder_0.5.4-6_arm64.buildinfo.asc' removed './b2/grinder_0.5.4-6_arm64.buildinfo.asc' 1745687902 arm64 unstable grinder Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/grinder_0.5.4-6.rbuild.log: 72.6% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/grinder_0.5.4-6.rbuild.log.gz [2025-04-26 17:18:23] INFO: Starting at 2025-04-26 17:18:23.028836 [2025-04-26 17:18:23] INFO: Generating the pages of 1 package(s) [2025-04-26 17:18:23] INFO: Finished at 2025-04-26 17:18:23.461766, took: 0:00:00.432936 All cleanup done. Sat Apr 26 17:18:23 UTC 2025 - total duration: 0h 1m 47s. Sat Apr 26 17:18:23 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-mH8BQ6ld, removing. Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 2min 34.770s CPU time consumed: 7.533s