Running as unit: rb-build-arm64_11-115273.service ==================================================================================== Fri Aug 1 01:31:46 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_arm64_11) on jenkins, called using "codethink04-arm64 codethink03-arm64" as arguments. Fri Aug 1 01:31:46 UTC 2025 - actually running "reproducible_build.sh" (md5sum 44ec6a3142940d5e9a7ab76543d96029) as "/tmp/jenkins-script-qabplovW" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Fri Aug 1 01:31:46 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink04-arm64.debian.net is marked as down. Fri Aug 1 01:31:46 UTC 2025 - checking via ssh if codethink04-arm64.debian.net is up. removed '/tmp/read-only-fs-test-I6JwJv' Fri Aug 1 01:31:46 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink03-arm64.debian.net is marked as down. Fri Aug 1 01:31:46 UTC 2025 - checking via ssh if codethink03-arm64.debian.net is up. removed '/tmp/read-only-fs-test-Aq7JSV' ok, let's check if biomaj3-download is building anywhere yet… ok, biomaj3-download is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of biomaj3-download in unstable on arm64 on jenkins now. 1st build will be done on codethink04-arm64.debian.net. 2nd build will be done on codethink03-arm64.debian.net. ============================================================================= Fri Aug 1 01:31:58 UTC 2025 I: starting to build biomaj3-download/unstable/arm64 on jenkins on '2025-08-01 01:31' Fri Aug 1 01:31:58 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_11/115273/console.log 1754011918 arm64 unstable biomaj3-download Fri Aug 1 01:31:58 UTC 2025 I: Downloading source for unstable/biomaj3-download=3.2.12-2 --2025-08-01 01:31:59-- http://deb.debian.org/debian/pool/main/b/biomaj3-download/biomaj3-download_3.2.12-2.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2541 (2.5K) [text/prs.lines.tag] Saving to: ‘biomaj3-download_3.2.12-2.dsc’ 0K .. 100% 289M=0s 2025-08-01 01:31:59 (289 MB/s) - ‘biomaj3-download_3.2.12-2.dsc’ saved [2541/2541] --2025-08-01 01:31:59-- http://deb.debian.org/debian/pool/main/b/biomaj3-download/biomaj3-download_3.2.12-2.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2541 (2.5K) [text/prs.lines.tag] Saving to: ‘biomaj3-download_3.2.12-2.dsc’ 0K .. 100% 289M=0s 2025-08-01 01:31:59 (289 MB/s) - ‘biomaj3-download_3.2.12-2.dsc’ saved [2541/2541] Fri Aug 1 01:31:59 UTC 2025 I: biomaj3-download_3.2.12-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: biomaj3-download Binary: python3-biomaj3-download Architecture: all Version: 3.2.12-2 Maintainer: Debian Med Packaging Team Uploaders: Olivier Sallou Homepage: https://github.com/genouest/biomaj-download Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/biomaj3-download Vcs-Git: https://salsa.debian.org/med-team/biomaj3-download.git Testsuite: autopkgtest-pkg-python Build-Depends: debhelper-compat (= 13), dh-sequence-python3, protobuf-compiler, python3-all, python3-bcrypt, python3-consul, python3-flask, python3-humanfriendly, python3-irodsclient, python3-pytest, python3-pika, python3-prometheus-client, python3-protobuf, python3-pycurl, python3-pymongo, python3-redis, python3-requests, python3-setuptools, python3-yaml, python3-biomaj3-core, python3-biomaj3-zipkin, python3-ftputil, python3-tenacity , python3-simpleeval , rsync Package-List: python3-biomaj3-download deb python optional arch=all Checksums-Sha1: 0d7c0396e02f59ae3af66d6aa47e279855d6f657 51764 biomaj3-download_3.2.12.orig.tar.xz 412985f391a240aefd5f4d060126c379ed8b8218 14460 biomaj3-download_3.2.12-2.debian.tar.xz Checksums-Sha256: bfdb8e613f4f1e142fb7166a0bd7a7e1c49f06b9cfe179a65b279dfb4ba4b4af 51764 biomaj3-download_3.2.12.orig.tar.xz 8a7e24212e008eb50dbfa6927c3ceff62394316839d4a287bd8f4b8ece75452f 14460 biomaj3-download_3.2.12-2.debian.tar.xz Files: a71038a5a7b65418530c200421debe32 51764 biomaj3-download_3.2.12.orig.tar.xz c808d3a078eb2c3383ea2c55bc1e4588 14460 biomaj3-download_3.2.12-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmdl2dMRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtFd9A/8C+gqeHIFxLdSr7liXbVmTQ+v93vsigBg +2IRuFYqw6kmTg7rGRS4lN91V7E8/Wv21lIW46R5BgEmTKnYfszSlpUris4mnv1+ BSWvRVUY5xEsc2HOaWSUZk5IVV82bN8qoxZchFl1IrguU5v6dUDHGliow2pZXKEq KAslPe1J1R0jFHryh8B96iSq9+qhUIbFAHhjtMVvzVljxVgpK6erYEnauT3EDWcy i/zXl3HSEh39CQt0H54yEult0KpR8pHm/VhPjzeFLINkO+8JAgAOPOSAsqap65OM YXBQ4de2T9VHERz4PPwkAcoiu9u403Gc1otQLAjdbMBxFMYiBDbyff+IO3LpaeiU Zhr2wXrZ+waOMvztiMm51ZXL2QgDQmjGWRvYh3pBLRZ8rtX1nzxJrccqliD2MA7I yXr99f8RZmOsJVxoA5YG6PGVu9/qzA6uEm9DW1aMShoNpilvlym05i6s9PmOyqRf QNRyB9t7dSt/IVOgplx2WQegQjFMKn3pZimt+gTNlNcxxLmykZmsWjFUq4prX/4c F7jjSkf+VOzcwxj4krA/OxBYrywk5XuF2Ft3BWyV95zIFcBMQiSCzrW9AFverKXO lzS7/mhUTK9gzPCi8GkJHcuKiZDM6hqy3eCD+yoJCYNRtIO0jfoKIha96DSqVyFY b9gpHh9t0Sg= =f5ys -----END PGP SIGNATURE----- Fri Aug 1 01:31:59 UTC 2025 I: Checking whether the package is not for us Fri Aug 1 01:31:59 UTC 2025 I: Starting 1st build on remote node codethink04-arm64.debian.net. Fri Aug 1 01:31:59 UTC 2025 I: Preparing to do remote build '1' on codethink04-arm64.debian.net. Fri Aug 1 01:31:59 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink04-arm64.debian.net is marked as down. Fri Aug 1 01:31:59 UTC 2025 - checking via ssh if codethink04-arm64.debian.net is up. removed '/tmp/read-only-fs-test-UmwdrO' ==================================================================================== Fri Aug 1 01:32:00 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on codethink04-arm64, called using "1 biomaj3-download unstable /srv/reproducible-results/rbuild-debian/r-b-build.UPWU1Oy1 3.2.12-2" as arguments. Fri Aug 1 01:32:00 UTC 2025 - actually running "reproducible_build.sh" (md5sum 44ec6a3142940d5e9a7ab76543d96029) as "/tmp/jenkins-script-fsDIeoTF" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Fri Aug 1 01:32:00 UTC 2025 I: Downloading source for unstable/biomaj3-download=3.2.12-2 Reading package lists... NOTICE: 'biomaj3-download' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/biomaj3-download.git Please use: git clone https://salsa.debian.org/med-team/biomaj3-download.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 68.8 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main biomaj3-download 3.2.12-2 (dsc) [2541 B] Get:2 http://deb.debian.org/debian unstable/main biomaj3-download 3.2.12-2 (tar) [51.8 kB] Get:3 http://deb.debian.org/debian unstable/main biomaj3-download 3.2.12-2 (diff) [14.5 kB] Fetched 68.8 kB in 0s (1100 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'biomaj3-download' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/biomaj3-download.git Please use: git clone https://salsa.debian.org/med-team/biomaj3-download.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 68.8 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main biomaj3-download 3.2.12-2 (dsc) [2541 B] Get:2 http://deb.debian.org/debian unstable/main biomaj3-download 3.2.12-2 (tar) [51.8 kB] Get:3 http://deb.debian.org/debian unstable/main biomaj3-download 3.2.12-2 (diff) [14.5 kB] Fetched 68.8 kB in 0s (1100 kB/s) Download complete and in download only mode ============================================================================= Building biomaj3-download in unstable on arm64 on codethink04-arm64 now. Date: Fri Aug 1 02:32:00 BST 2025 Date UTC: Fri Aug 1 01:32:00 UTC 2025 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Thu Jul 31 13:32:01 -12 2025 I: pbuilder-time-stamp: 1754011921 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [biomaj3-download_3.2.12-2.dsc] I: copying [./biomaj3-download_3.2.12.orig.tar.xz] I: copying [./biomaj3-download_3.2.12-2.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./biomaj3-download_3.2.12-2.dsc: no acceptable signature found dpkg-source: info: extracting biomaj3-download in biomaj3-download-3.2.12 dpkg-source: info: unpacking biomaj3-download_3.2.12.orig.tar.xz dpkg-source: info: unpacking biomaj3-download_3.2.12-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying locale-sensitive.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/698221/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='d266207391c8401f95cac1a7a099b05d' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='698221' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.UPWU1Oy1/pbuilderrc_QmPH --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.UPWU1Oy1/b1 --logfile b1/build.log biomaj3-download_3.2.12-2.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink04-arm64 6.1.0-37-cloud-arm64 #1 SMP Debian 6.1.140-1 (2025-05-22) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 12 19:25 /bin -> usr/bin I: user script /srv/workspace/pbuilder/698221/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, protobuf-compiler, python3-all, python3-bcrypt, python3-consul, python3-flask, python3-humanfriendly, python3-irodsclient, python3-pytest, python3-pika, python3-prometheus-client, python3-protobuf, python3-pycurl, python3-pymongo, python3-redis, python3-requests, python3-setuptools, python3-yaml, python3-biomaj3-core, python3-biomaj3-zipkin, python3-ftputil, python3-tenacity, python3-simpleeval, rsync dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19964 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on protobuf-compiler; however: Package protobuf-compiler is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-bcrypt; however: Package python3-bcrypt is not installed. pbuilder-satisfydepends-dummy depends on python3-consul; however: Package python3-consul is not installed. pbuilder-satisfydepends-dummy depends on python3-flask; however: Package python3-flask is not installed. pbuilder-satisfydepends-dummy depends on python3-humanfriendly; however: Package python3-humanfriendly is not installed. pbuilder-satisfydepends-dummy depends on python3-irodsclient; however: Package python3-irodsclient is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-pika; however: Package python3-pika is not installed. pbuilder-satisfydepends-dummy depends on python3-prometheus-client; however: Package python3-prometheus-client is not installed. pbuilder-satisfydepends-dummy depends on python3-protobuf; however: Package python3-protobuf is not installed. pbuilder-satisfydepends-dummy depends on python3-pycurl; however: Package python3-pycurl is not installed. pbuilder-satisfydepends-dummy depends on python3-pymongo; however: Package python3-pymongo is not installed. pbuilder-satisfydepends-dummy depends on python3-redis; however: Package python3-redis is not installed. pbuilder-satisfydepends-dummy depends on python3-requests; however: Package python3-requests is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-yaml; however: Package python3-yaml is not installed. pbuilder-satisfydepends-dummy depends on python3-biomaj3-core; however: Package python3-biomaj3-core is not installed. pbuilder-satisfydepends-dummy depends on python3-biomaj3-zipkin; however: Package python3-biomaj3-zipkin is not installed. pbuilder-satisfydepends-dummy depends on python3-ftputil; however: Package python3-ftputil is not installed. pbuilder-satisfydepends-dummy depends on python3-tenacity; however: Package python3-tenacity is not installed. pbuilder-satisfydepends-dummy depends on python3-simpleeval; however: Package python3-simpleeval is not installed. pbuilder-satisfydepends-dummy depends on rsync; however: Package rsync is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbrotli1{a} libcom-err2{a} libcurl3t64-gnutls{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgnutls30t64{a} libgssapi-krb5-2{a} libidn2-0{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap2{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libp11-kit0{a} libpipeline1{a} libpopt0{a} libprotobuf32t64{a} libprotoc32t64{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libtasn1-6{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} libyaml-0-2{a} m4{a} man-db{a} media-types{a} netbase{a} openssl{a} po-debconf{a} protobuf-compiler{a} python3{a} python3-all{a} python3-autocommand{a} python3-bcrypt{a} python3-biomaj3-core{a} python3-biomaj3-zipkin{a} python3-blinker{a} python3-bson{a} python3-certifi{a} python3-chardet{a} python3-charset-normalizer{a} python3-click{a} python3-consul{a} python3-decorator{a} python3-defusedxml{a} python3-dnspython{a} python3-elastic-transport{a} python3-elasticsearch{a} python3-flask{a} python3-ftputil{a} python3-humanfriendly{a} python3-idna{a} python3-inflect{a} python3-iniconfig{a} python3-irodsclient{a} python3-itsdangerous{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-jinja2{a} python3-markupsafe{a} python3-minimal{a} python3-more-itertools{a} python3-packaging{a} python3-pika{a} python3-pkg-resources{a} python3-pluggy{a} python3-prettytable{a} python3-prometheus-client{a} python3-protobuf{a} python3-py-zipkin{a} python3-pycurl{a} python3-pymongo{a} python3-pytest{a} python3-redis{a} python3-requests{a} python3-setuptools{a} python3-simpleeval{a} python3-tenacity{a} python3-typeguard{a} python3-typing-extensions{a} python3-urllib3{a} python3-wcwidth{a} python3-werkzeug{a} python3-yaml{a} python3-zipp{a} python3.13{a} python3.13-minimal{a} readline-common{a} rsync{a} sensible-utils{a} tzdata{a} The following packages are RECOMMENDED but will NOT be installed: curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libprotobuf-dev libsasl2-modules lynx publicsuffix python3-asgiref python3-babel python3-bson-ext python3-cryptography python3-dotenv python3-gridfs python3-h2 python3-httpcore python3-httpx python3-openssl python3-pygments python3-pyinotify python3-pymongo-ext wget 0 packages upgraded, 128 newly installed, 0 to remove and 0 not upgraded. Need to get 30.3 MB of archives. After unpacking 127 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main arm64 libexpat1 arm64 2.7.1-2 [93.3 kB] Get: 2 http://deb.debian.org/debian unstable/main arm64 libpython3.13-minimal arm64 3.13.5-2 [856 kB] Get: 3 http://deb.debian.org/debian unstable/main arm64 python3.13-minimal arm64 3.13.5-2 [2003 kB] Get: 4 http://deb.debian.org/debian unstable/main arm64 python3-minimal arm64 3.13.5-1 [27.2 kB] Get: 5 http://deb.debian.org/debian unstable/main arm64 media-types all 13.0.0 [29.3 kB] Get: 6 http://deb.debian.org/debian unstable/main arm64 netbase all 6.5 [12.4 kB] Get: 7 http://deb.debian.org/debian unstable/main arm64 tzdata all 2025b-4 [260 kB] Get: 8 http://deb.debian.org/debian unstable/main arm64 libffi8 arm64 3.4.8-2 [21.3 kB] Get: 9 http://deb.debian.org/debian unstable/main arm64 readline-common all 8.2-6 [69.4 kB] Get: 10 http://deb.debian.org/debian unstable/main arm64 libreadline8t64 arm64 8.2-6 [159 kB] Get: 11 http://deb.debian.org/debian unstable/main arm64 libpython3.13-stdlib arm64 3.13.5-2 [1892 kB] Get: 12 http://deb.debian.org/debian unstable/main arm64 python3.13 arm64 3.13.5-2 [757 kB] Get: 13 http://deb.debian.org/debian unstable/main arm64 libpython3-stdlib arm64 3.13.5-1 [10.2 kB] Get: 14 http://deb.debian.org/debian unstable/main arm64 python3 arm64 3.13.5-1 [28.2 kB] Get: 15 http://deb.debian.org/debian unstable/main arm64 libpopt0 arm64 1.19+dfsg-2 [42.8 kB] Get: 16 http://deb.debian.org/debian unstable/main arm64 rsync arm64 3.4.1+ds1-5 [409 kB] Get: 17 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.25 [25.0 kB] Get: 18 http://deb.debian.org/debian unstable/main arm64 openssl arm64 3.5.1-1 [1457 kB] Get: 19 http://deb.debian.org/debian unstable/main arm64 ca-certificates all 20250419 [162 kB] Get: 20 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.46-5 [338 kB] Get: 21 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.46-5 [103 kB] Get: 22 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.46-5 [43.7 kB] Get: 23 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.23.1-2 [241 kB] Get: 24 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 25 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-9 [1130 kB] Get: 26 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.41-5 [93.8 kB] Get: 27 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 28 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.1-1 [1453 kB] Get: 29 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.19-8 [285 kB] Get: 30 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3.1 [494 kB] Get: 31 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20240727.1 [60.2 kB] Get: 32 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.17-4 [862 kB] Get: 33 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.23.1-2 [770 kB] Get: 34 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.24.2 [90.9 kB] Get: 35 http://deb.debian.org/debian unstable/main arm64 libtool all 2.5.4-4 [539 kB] Get: 36 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 37 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 38 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 39 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 40 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 41 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 42 http://deb.debian.org/debian unstable/main arm64 libunistring5 arm64 1.3-2 [453 kB] Get: 43 http://deb.debian.org/debian unstable/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-2.1 [630 kB] Get: 44 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.23.1-2 [1611 kB] Get: 45 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 46 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 47 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.24.2 [919 kB] Get: 48 http://deb.debian.org/debian unstable/main arm64 dh-python all 6.20250414 [116 kB] Get: 49 http://deb.debian.org/debian unstable/main arm64 libbrotli1 arm64 1.1.0-2+b7 [308 kB] Get: 50 http://deb.debian.org/debian unstable/main arm64 libcom-err2 arm64 1.47.2-3+b3 [24.9 kB] Get: 51 http://deb.debian.org/debian unstable/main arm64 libidn2-0 arm64 2.3.8-2 [107 kB] Get: 52 http://deb.debian.org/debian unstable/main arm64 libp11-kit0 arm64 0.25.5-3 [409 kB] Get: 53 http://deb.debian.org/debian unstable/main arm64 libtasn1-6 arm64 4.20.0-2 [47.3 kB] Get: 54 http://deb.debian.org/debian unstable/main arm64 libgnutls30t64 arm64 3.8.9-3 [1375 kB] Get: 55 http://deb.debian.org/debian unstable/main arm64 libkrb5support0 arm64 1.21.3-5 [32.4 kB] Get: 56 http://deb.debian.org/debian unstable/main arm64 libk5crypto3 arm64 1.21.3-5 [81.2 kB] Get: 57 http://deb.debian.org/debian unstable/main arm64 libkeyutils1 arm64 1.6.3-6 [9716 B] Get: 58 http://deb.debian.org/debian unstable/main arm64 libkrb5-3 arm64 1.21.3-5 [308 kB] Get: 59 http://deb.debian.org/debian unstable/main arm64 libgssapi-krb5-2 arm64 1.21.3-5 [127 kB] Get: 60 http://deb.debian.org/debian unstable/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-9 [20.1 kB] Get: 61 http://deb.debian.org/debian unstable/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-9 [55.6 kB] Get: 62 http://deb.debian.org/debian unstable/main arm64 libldap2 arm64 2.6.10+dfsg-1 [179 kB] Get: 63 http://deb.debian.org/debian unstable/main arm64 libnghttp2-14 arm64 1.64.0-1.1 [71.4 kB] Get: 64 http://deb.debian.org/debian unstable/main arm64 libnghttp3-9 arm64 1.8.0-1 [63.2 kB] Get: 65 http://deb.debian.org/debian unstable/main arm64 libngtcp2-16 arm64 1.11.0-1 [121 kB] Get: 66 http://deb.debian.org/debian unstable/main arm64 libngtcp2-crypto-gnutls8 arm64 1.11.0-1 [28.2 kB] Get: 67 http://deb.debian.org/debian unstable/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB] Get: 68 http://deb.debian.org/debian unstable/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b5 [56.8 kB] Get: 69 http://deb.debian.org/debian unstable/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Get: 70 http://deb.debian.org/debian unstable/main arm64 libcurl3t64-gnutls arm64 8.14.1-2 [353 kB] Get: 71 http://deb.debian.org/debian unstable/main arm64 libprotobuf32t64 arm64 3.21.12-11 [858 kB] Get: 72 http://deb.debian.org/debian unstable/main arm64 libprotoc32t64 arm64 3.21.12-11 [790 kB] Get: 73 http://deb.debian.org/debian unstable/main arm64 libyaml-0-2 arm64 0.2.5-2 [49.2 kB] Get: 74 http://deb.debian.org/debian unstable/main arm64 protobuf-compiler arm64 3.21.12-11 [84.7 kB] Get: 75 http://deb.debian.org/debian unstable/main arm64 python3-all arm64 3.13.5-1 [1044 B] Get: 76 http://deb.debian.org/debian unstable/main arm64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 77 http://deb.debian.org/debian unstable/main arm64 python3-bcrypt arm64 4.2.0-2.1+b1 [188 kB] Get: 78 http://deb.debian.org/debian unstable/main arm64 python3-more-itertools all 10.7.0-1 [67.4 kB] Get: 79 http://deb.debian.org/debian unstable/main arm64 python3-typing-extensions all 4.13.2-1 [90.5 kB] Get: 80 http://deb.debian.org/debian unstable/main arm64 python3-typeguard all 4.4.2-1 [37.3 kB] Get: 81 http://deb.debian.org/debian unstable/main arm64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 82 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 83 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 84 http://deb.debian.org/debian unstable/main arm64 python3-zipp all 3.21.0-1 [10.6 kB] Get: 85 http://deb.debian.org/debian unstable/main arm64 python3-setuptools all 78.1.1-0.1 [738 kB] Get: 86 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.context all 6.0.1-1 [8276 B] Get: 87 http://deb.debian.org/debian unstable/main arm64 python3-pkg-resources all 78.1.1-0.1 [224 kB] Get: 88 http://deb.debian.org/debian unstable/main arm64 python3-certifi all 2025.1.31+ds-1 [9652 B] Get: 89 http://deb.debian.org/debian unstable/main arm64 python3-urllib3 all 2.3.0-3 [115 kB] Get: 90 http://deb.debian.org/debian unstable/main arm64 python3-elastic-transport all 8.17.1-2 [37.0 kB] Get: 91 http://deb.debian.org/debian unstable/main arm64 python3-elasticsearch all 8.17.2-2 [223 kB] Get: 92 http://deb.debian.org/debian unstable/main arm64 python3-charset-normalizer arm64 3.4.2-1 [120 kB] Get: 93 http://deb.debian.org/debian unstable/main arm64 python3-idna all 3.10-1 [42.0 kB] Get: 94 http://deb.debian.org/debian unstable/main arm64 python3-chardet all 5.2.0+dfsg-2 [108 kB] Get: 95 http://deb.debian.org/debian unstable/main arm64 python3-requests all 2.32.3+dfsg-5 [72.2 kB] Get: 96 http://deb.debian.org/debian unstable/main arm64 python3-biomaj3-core all 3.0.28-4 [25.1 kB] Get: 97 http://deb.debian.org/debian unstable/main arm64 python3-py-zipkin all 1.2.8-2 [36.4 kB] Get: 98 http://deb.debian.org/debian unstable/main arm64 python3-biomaj3-zipkin all 0.2.2-3 [15.1 kB] Get: 99 http://deb.debian.org/debian unstable/main arm64 python3-blinker all 1.9.0-1 [12.6 kB] Get: 100 http://deb.debian.org/debian unstable/main arm64 python3-bson all 4.10.1-6 [87.2 kB] Get: 101 http://deb.debian.org/debian unstable/main arm64 python3-click all 8.2.0+0.really.8.1.8-1 [95.4 kB] Get: 102 http://deb.debian.org/debian unstable/main arm64 python3-consul all 1.5.5-1 [23.9 kB] Get: 103 http://deb.debian.org/debian unstable/main arm64 python3-decorator all 5.2.1-2 [33.0 kB] Get: 104 http://deb.debian.org/debian unstable/main arm64 python3-defusedxml all 0.7.1-3 [43.4 kB] Get: 105 http://deb.debian.org/debian unstable/main arm64 python3-dnspython all 2.7.0-1 [164 kB] Get: 106 http://deb.debian.org/debian unstable/main arm64 python3-itsdangerous all 2.2.0-2 [18.1 kB] Get: 107 http://deb.debian.org/debian unstable/main arm64 python3-markupsafe arm64 2.1.5-1+b4 [14.1 kB] Get: 108 http://deb.debian.org/debian unstable/main arm64 python3-jinja2 all 3.1.6-1 [107 kB] Get: 109 http://deb.debian.org/debian unstable/main arm64 python3-werkzeug all 3.1.3-2 [207 kB] Get: 110 http://deb.debian.org/debian unstable/main arm64 python3-flask all 3.1.1-1 [107 kB] Get: 111 http://deb.debian.org/debian unstable/main arm64 python3-ftputil all 5.1.0-1 [40.4 kB] Get: 112 http://deb.debian.org/debian unstable/main arm64 python3-humanfriendly all 10.0-6 [85.6 kB] Get: 113 http://deb.debian.org/debian unstable/main arm64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 114 http://deb.debian.org/debian unstable/main arm64 python3-wcwidth all 0.2.13+dfsg1-1 [24.9 kB] Get: 115 http://deb.debian.org/debian unstable/main arm64 python3-prettytable all 3.15.1-1 [41.8 kB] Get: 116 http://deb.debian.org/debian unstable/main arm64 python3-irodsclient all 3.0.0-1 [213 kB] Get: 117 http://deb.debian.org/debian unstable/main arm64 python3-packaging all 25.0-1 [56.6 kB] Get: 118 http://deb.debian.org/debian unstable/main arm64 python3-pika all 1.3.2-1 [125 kB] Get: 119 http://deb.debian.org/debian unstable/main arm64 python3-pluggy all 1.5.0-1 [26.9 kB] Get: 120 http://deb.debian.org/debian unstable/main arm64 python3-prometheus-client all 0.21.1+ds1-1 [44.9 kB] Get: 121 http://deb.debian.org/debian unstable/main arm64 python3-protobuf arm64 3.21.12-11 [242 kB] Get: 122 http://deb.debian.org/debian unstable/main arm64 python3-pycurl arm64 7.45.6-1 [69.4 kB] Get: 123 http://deb.debian.org/debian unstable/main arm64 python3-pymongo all 4.10.1-6 [272 kB] Get: 124 http://deb.debian.org/debian unstable/main arm64 python3-pytest all 8.3.5-2 [250 kB] Get: 125 http://deb.debian.org/debian unstable/main arm64 python3-redis all 6.1.0-2 [249 kB] Get: 126 http://deb.debian.org/debian unstable/main arm64 python3-simpleeval all 1.0.3-1 [24.0 kB] Get: 127 http://deb.debian.org/debian unstable/main arm64 python3-tenacity all 8.4.2+really8.4.1-2 [46.0 kB] Get: 128 http://deb.debian.org/debian unstable/main arm64 python3-yaml arm64 6.0.2-1+b2 [122 kB] Fetched 30.3 MB in 0s (105 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19964 files and directories currently installed.) Preparing to unpack .../libexpat1_2.7.1-2_arm64.deb ... Unpacking libexpat1:arm64 (2.7.1-2) ... Selecting previously unselected package libpython3.13-minimal:arm64. Preparing to unpack .../libpython3.13-minimal_3.13.5-2_arm64.deb ... Unpacking libpython3.13-minimal:arm64 (3.13.5-2) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../python3.13-minimal_3.13.5-2_arm64.deb ... Unpacking python3.13-minimal (3.13.5-2) ... Setting up libpython3.13-minimal:arm64 (3.13.5-2) ... Setting up libexpat1:arm64 (2.7.1-2) ... Setting up python3.13-minimal (3.13.5-2) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20298 files and directories currently installed.) 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Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.2-6) ... Selecting previously unselected package libpython3.13-stdlib:arm64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.5-2_arm64.deb ... Unpacking libpython3.13-stdlib:arm64 (3.13.5-2) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.5-2_arm64.deb ... Unpacking python3.13 (3.13.5-2) ... 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Setting up libyaml-0-2:arm64 (0.2.5-2) ... Setting up libdebhelper-perl (13.24.2) ... Setting up libbrotli1:arm64 (1.1.0-2+b7) ... Setting up libmagic1t64:arm64 (1:5.46-5) ... Setting up libnghttp2-14:arm64 (1.64.0-1.1) ... Setting up gettext-base (0.23.1-2) ... Setting up m4 (1.4.19-8) ... Setting up libcom-err2:arm64 (1.47.2-3+b3) ... Setting up file (1:5.46-5) ... Setting up libelf1t64:arm64 (0.192-4) ... Setting up libkrb5support0:arm64 (1.21.3-5) ... Setting up libsasl2-modules-db:arm64 (2.1.28+dfsg1-9) ... Setting up tzdata (2025b-4) ... Current default time zone: 'Etc/UTC' Local time is now: Fri Aug 1 01:32:20 UTC 2025. Universal Time is now: Fri Aug 1 01:32:20 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20240727.1) ... Setting up libunistring5:arm64 (1.3-2) ... Setting up autopoint (0.23.1-2) ... Setting up libk5crypto3:arm64 (1.21.3-5) ... Setting up libsasl2-2:arm64 (2.1.28+dfsg1-9) ... Setting up autoconf (2.72-3.1) ... Setting up libnghttp3-9:arm64 (1.8.0-1) ... Setting up libffi8:arm64 (3.4.8-2) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.25) ... Setting up libuchardet0:arm64 (0.0.8-1+b2) ... Setting up libtasn1-6:arm64 (4.20.0-2) ... Setting up netbase (6.5) ... Setting up libngtcp2-16:arm64 (1.11.0-1) ... Setting up libkrb5-3:arm64 (1.21.3-5) ... Setting up libssh2-1t64:arm64 (1.11.1-1) ... Setting up libprotoc32t64:arm64 (3.21.12-11) ... Setting up openssl (3.5.1-1) ... Setting up readline-common (8.2-6) ... Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-2.1) ... Setting up libldap2:arm64 (2.6.10+dfsg-1) ... Setting up libpopt0:arm64 (1.19+dfsg-2) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up gettext (0.23.1-2) ... Setting up protobuf-compiler (3.21.12-11) ... Setting up libtool (2.5.4-4) ... 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Setting up python3-click (8.2.0+0.really.8.1.8-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up python3-markupsafe (2.1.5-1+b4) ... Setting up python3-simpleeval (1.0.3-1) ... Setting up python3-bson (4.10.1-6) ... Setting up python3-decorator (5.2.1-2) ... Setting up python3-jinja2 (3.1.6-1) ... Setting up python3-packaging (25.0-1) ... Setting up python3-chardet (5.2.0+dfsg-2) ... Setting up python3-wcwidth (0.2.13+dfsg1-1) ... Setting up python3-humanfriendly (10.0-6) ... Setting up python3-certifi (2025.1.31+ds-1) ... Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up python3-werkzeug (3.1.3-2) ... Setting up python3-idna (3.10-1) ... Setting up python3-typing-extensions (4.13.2-1) ... Setting up python3-redis (6.1.0-2) ... Setting up python3-urllib3 (2.3.0-3) ... Setting up python3-pluggy (1.5.0-1) ... Setting up python3-dnspython (2.7.0-1) ... Setting up python3-py-zipkin (1.2.8-2) ... Setting up python3-protobuf (3.21.12-11) ... Setting up python3-pymongo (4.10.1-6) ... Setting up python3-prettytable (3.15.1-1) ... Setting up libngtcp2-crypto-gnutls8:arm64 (1.11.0-1) ... Setting up python3-blinker (1.9.0-1) ... Setting up dh-python (6.20250414) ... Setting up python3-more-itertools (10.7.0-1) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up python3-elastic-transport (8.17.1-2) ... Setting up python3-ftputil (5.1.0-1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.1-1) ... Setting up python3-defusedxml (0.7.1-3) ... Setting up python3-charset-normalizer (3.4.2-1) ... Setting up python3-pika (1.3.2-1) ... Setting up python3-pytest (8.3.5-2) ... Setting up python3-tenacity (8.4.2+really8.4.1-2) ... Setting up python3-bcrypt (4.2.0-2.1+b1) ... Setting up python3-typeguard (4.4.2-1) ... Setting up libcurl3t64-gnutls:arm64 (8.14.1-2) ... Setting up python3-itsdangerous (2.2.0-2) ... Setting up python3-all (3.13.5-1) ... Setting up python3-yaml (6.0.2-1+b2) ... Setting up debhelper (13.24.2) ... Setting up python3-inflect (7.3.1-2) ... Setting up python3-prometheus-client (0.21.1+ds1-1) ... Setting up python3-pycurl (7.45.6-1) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-requests (2.32.3+dfsg-5) ... Setting up python3-consul (1.5.5-1) ... Setting up python3-irodsclient (3.0.0-1) ... /usr/lib/python3/dist-packages/irods/test/admin_test.py:379: SyntaxWarning: invalid escape sequence '\]' new_password = """abc123!"#$%&'()*+,-./:;<=>?@[\]^_`{|}~Z""" /usr/lib/python3/dist-packages/irods/test/admin_test.py:406: SyntaxWarning: invalid escape sequence '\]' new_comment = """comment-abc123!"#$%&'()*+,-./:;<=>?@[\]^_{|}~Z""" # omitting backtick due to #170 /usr/lib/python3/dist-packages/irods/test/admin_test.py:425: SyntaxWarning: invalid escape sequence '\]' new_info = """info-abc123!"#$%&'()*+,-./:;<=>?@[\]^_{|}~Z""" # omitting backtick due to #170 /usr/lib/python3/dist-packages/irods/test/data_obj_test.py:37: SyntaxWarning: invalid escape sequence '\.' localhost_with_optional_domain_pattern = re.compile("localhost(\.\S\S*)?$") /usr/lib/python3/dist-packages/irods/test/data_obj_test.py:420: SyntaxWarning: invalid escape sequence '\s' NumThreadsRegex = re.compile("^num_threads\s*=\s*(\d+)", re.MULTILINE) /usr/lib/python3/dist-packages/irods/test/data_obj_test.py:604: SyntaxWarning: invalid escape sequence '\s' "No\s+Checksum\s+Available.+\s+Replica\s\[(\d+)\]", re.IGNORECASE /usr/lib/python3/dist-packages/irods/test/data_obj_test.py:1049: SyntaxWarning: invalid escape sequence '\S' re.finditer("redirect_to_host = (\S+)", search_text), /usr/lib/python3/dist-packages/irods/test/data_obj_test.py:1050: SyntaxWarning: invalid escape sequence '\S' re.finditer("target_host = (\S+)", search_text), /usr/lib/python3/dist-packages/irods/test/rule_test.py:423: SyntaxWarning: invalid escape sequence '\[' self.assertRegexpMatches(lines[0], ".*\[Hello world!\]") /usr/lib/python3/dist-packages/irods/test/rule_test.py:445: SyntaxWarning: invalid escape sequence '\[' self.assertRegexpMatches(lines[0], "\[STRING\]\[\]") /usr/lib/python3/dist-packages/irods/test/rule_test.py:446: SyntaxWarning: invalid escape sequence '\[' self.assertRegexpMatches(lines[1], "\[STRING\]\[\]") /usr/lib/python3/dist-packages/irods/test/rule_test.py:455: SyntaxWarning: invalid escape sequence '\[' self.assertRegexpMatches(lines[0], "\[INTEGER\]\[5\]") /usr/lib/python3/dist-packages/irods/test/rule_test.py:456: SyntaxWarning: invalid escape sequence '\[' self.assertRegexpMatches(lines[1], "\[STRING\]\[A String\]") Setting up python3-pkg-resources (78.1.1-0.1) ... Setting up python3-elasticsearch (8.17.2-2) ... Setting up python3-setuptools (78.1.1-0.1) ... Setting up python3-biomaj3-zipkin (0.2.2-3) ... Setting up python3-flask (3.1.1-1) ... Setting up python3-biomaj3-core (3.0.28-4) ... Processing triggers for libc-bin (2.41-11) ... Processing triggers for ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/biomaj3-download-3.2.12/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../biomaj3-download_3.2.12-2_source.changes dpkg-buildpackage: info: source package biomaj3-download dpkg-buildpackage: info: source version 3.2.12-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py clean /usr/lib/python3/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. By 2026-Mar-03, you need to update your project and remove deprecated calls or your builds will no longer be supported. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self._enforce_underscore(opt, section) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. (Affected: biomaj_download). By 2026-Mar-03, you need to update your project and remove deprecated calls or your builds will no longer be supported. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self._enforce_underscore(opt, section) /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU Affero General Public License v3 or later (AGPLv3+) See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running clean removing '/build/reproducible-path/biomaj3-download-3.2.12/.pybuild/cpython3_3.13_biomaj-download/build' (and everything under it) 'build/bdist.linux-aarch64' does not exist -- can't clean it 'build/scripts-3.13' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild debian/rules override_dh_clean make[1]: Entering directory '/build/reproducible-path/biomaj3-download-3.2.12' dh_clean rm -rf biomaj_download.egg-info if [ -e biomaj_download/message/downmessage_pb2.py.bak ] ; then mv biomaj_download/message/downmessage_pb2.py.bak biomaj_download/message/downmessage_pb2.py; fi make[1]: Leaving directory '/build/reproducible-path/biomaj3-download-3.2.12' debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/biomaj3-download-3.2.12' cp -a biomaj_download/message/downmessage_pb2.py biomaj_download/message/downmessage_pb2.py.bak dh_auto_configure I: pybuild base:311: python3.13 setup.py config /usr/lib/python3/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. By 2026-Mar-03, you need to update your project and remove deprecated calls or your builds will no longer be supported. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self._enforce_underscore(opt, section) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. (Affected: biomaj_download). By 2026-Mar-03, you need to update your project and remove deprecated calls or your builds will no longer be supported. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self._enforce_underscore(opt, section) /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU Affero General Public License v3 or later (AGPLv3+) See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running config make[1]: Leaving directory '/build/reproducible-path/biomaj3-download-3.2.12' debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/biomaj3-download-3.2.12' cd biomaj_download/message && protoc --python_out=. downmessage.proto dh_auto_build I: pybuild base:311: /usr/bin/python3 setup.py build /usr/lib/python3/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. By 2026-Mar-03, you need to update your project and remove deprecated calls or your builds will no longer be supported. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self._enforce_underscore(opt, section) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. (Affected: biomaj_download). By 2026-Mar-03, you need to update your project and remove deprecated calls or your builds will no longer be supported. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self._enforce_underscore(opt, section) /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU Affero General Public License v3 or later (AGPLv3+) See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running build running build_py creating /build/reproducible-path/biomaj3-download-3.2.12/.pybuild/cpython3_3.13_biomaj-download/build/biomaj_download copying biomaj_download/wsgi.py -> /build/reproducible-path/biomaj3-download-3.2.12/.pybuild/cpython3_3.13_biomaj-download/build/biomaj_download copying biomaj_download/downloadservice.py -> /build/reproducible-path/biomaj3-download-3.2.12/.pybuild/cpython3_3.13_biomaj-download/build/biomaj_download copying biomaj_download/downloadclient.py -> /build/reproducible-path/biomaj3-download-3.2.12/.pybuild/cpython3_3.13_biomaj-download/build/biomaj_download copying biomaj_download/biomaj_download_web.py -> /build/reproducible-path/biomaj3-download-3.2.12/.pybuild/cpython3_3.13_biomaj-download/build/biomaj_download copying biomaj_download/__init__.py -> /build/reproducible-path/biomaj3-download-3.2.12/.pybuild/cpython3_3.13_biomaj-download/build/biomaj_download creating /build/reproducible-path/biomaj3-download-3.2.12/.pybuild/cpython3_3.13_biomaj-download/build/biomaj_download/message copying biomaj_download/message/downmessage_pb2.py -> /build/reproducible-path/biomaj3-download-3.2.12/.pybuild/cpython3_3.13_biomaj-download/build/biomaj_download/message copying biomaj_download/message/__init__.py -> /build/reproducible-path/biomaj3-download-3.2.12/.pybuild/cpython3_3.13_biomaj-download/build/biomaj_download/message creating /build/reproducible-path/biomaj3-download-3.2.12/.pybuild/cpython3_3.13_biomaj-download/build/biomaj_download/download copying biomaj_download/download/rsync.py -> /build/reproducible-path/biomaj3-download-3.2.12/.pybuild/cpython3_3.13_biomaj-download/build/biomaj_download/download copying biomaj_download/download/protocolirods.py -> /build/reproducible-path/biomaj3-download-3.2.12/.pybuild/cpython3_3.13_biomaj-download/build/biomaj_download/download copying biomaj_download/download/localcopy.py -> /build/reproducible-path/biomaj3-download-3.2.12/.pybuild/cpython3_3.13_biomaj-download/build/biomaj_download/download copying biomaj_download/download/interface.py -> /build/reproducible-path/biomaj3-download-3.2.12/.pybuild/cpython3_3.13_biomaj-download/build/biomaj_download/download copying biomaj_download/download/downloadthreads.py -> /build/reproducible-path/biomaj3-download-3.2.12/.pybuild/cpython3_3.13_biomaj-download/build/biomaj_download/download copying biomaj_download/download/direct.py -> /build/reproducible-path/biomaj3-download-3.2.12/.pybuild/cpython3_3.13_biomaj-download/build/biomaj_download/download copying biomaj_download/download/curl.py -> /build/reproducible-path/biomaj3-download-3.2.12/.pybuild/cpython3_3.13_biomaj-download/build/biomaj_download/download copying biomaj_download/download/__init__.py -> /build/reproducible-path/biomaj3-download-3.2.12/.pybuild/cpython3_3.13_biomaj-download/build/biomaj_download/download running egg_info creating biomaj_download.egg-info writing biomaj_download.egg-info/PKG-INFO writing dependency_links to biomaj_download.egg-info/dependency_links.txt writing requirements to biomaj_download.egg-info/requires.txt writing top-level names to biomaj_download.egg-info/top_level.txt writing manifest file 'biomaj_download.egg-info/SOURCES.txt' reading manifest file 'biomaj_download.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.txt' under directory 'biomaj_core' adding license file 'LICENSE' writing manifest file 'biomaj_download.egg-info/SOURCES.txt' running build_scripts creating build/scripts-3.13 copying and adjusting bin/biomaj_download_consumer.py -> build/scripts-3.13 changing mode of build/scripts-3.13/biomaj_download_consumer.py from 644 to 755 make[1]: Leaving directory '/build/reproducible-path/biomaj3-download-3.2.12' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/biomaj3-download-3.2.12' LOCAL_IRODS=0 NETWORK=0 python3 -m pytest -v tests/biomaj_tests.py ============================= test session starts ============================== platform linux -- Python 3.13.5, pytest-8.3.5, pluggy-1.5.0 -- /usr/bin/python3 cachedir: .pytest_cache rootdir: /build/reproducible-path/biomaj3-download-3.2.12 plugins: typeguard-4.4.2 collecting ... collected 61 items tests/biomaj_tests.py::TestDownloadInterface::test_retry_parsing PASSED [ 1%] tests/biomaj_tests.py::TestBiomajLocalDownload::test_local_list PASSED [ 3%] tests/biomaj_tests.py::TestBiomajLocalDownload::test_local_list_error PASSED [ 4%] tests/biomaj_tests.py::TestBiomajLocalDownload::test_local_download PASSED [ 6%] tests/biomaj_tests.py::TestBiomajLocalDownload::test_local_download_in_subdir PASSED [ 8%] tests/biomaj_tests.py::TestBiomajLocalDownload::test_local_download_hardlinks PASSED [ 9%] tests/biomaj_tests.py::TestBiomajHTTPDownload::test_http_list SKIPPED [ 11%] tests/biomaj_tests.py::TestBiomajHTTPDownload::test_http_list_error SKIPPED [ 13%] tests/biomaj_tests.py::TestBiomajHTTPDownload::test_http_list_dateregexp SKIPPED [ 14%] tests/biomaj_tests.py::TestBiomajHTTPDownload::test_http_download_no_size SKIPPED [ 16%] tests/biomaj_tests.py::TestBiomajHTTPDownload::test_http_download_no_date SKIPPED [ 18%] tests/biomaj_tests.py::TestBiomajHTTPDownload::test_http_download SKIPPED [ 19%] tests/biomaj_tests.py::TestBiomajHTTPDownload::test_http_download_in_subdir SKIPPED [ 21%] tests/biomaj_tests.py::TestBiomajHTTPDownload::test_redirection SKIPPED [ 22%] tests/biomaj_tests.py::TestBiomajHTTPSDownload::test_download SKIPPED [ 24%] tests/biomaj_tests.py::TestBiomajSFTPDownload::test_list_error SKIPPED [ 26%] tests/biomaj_tests.py::TestBiomajSFTPDownload::test_download SKIPPED [ 27%] tests/biomaj_tests.py::TestBiomajDirectFTPDownload::test_ftp_list SKIPPED [ 29%] tests/biomaj_tests.py::TestBiomajDirectFTPDownload::test_ftp_list_error SKIPPED [ 31%] tests/biomaj_tests.py::TestBiomajDirectFTPDownload::test_download SKIPPED [ 32%] tests/biomaj_tests.py::TestBiomajDirectFTPSDownload::test_ftps_list SKIPPED [ 34%] tests/biomaj_tests.py::TestBiomajDirectFTPSDownload::test_download SKIPPED [ 36%] tests/biomaj_tests.py::TestBiomajDirectHTTPDownload::test_http_list SKIPPED [ 37%] tests/biomaj_tests.py::TestBiomajDirectHTTPDownload::test_http_list_error SKIPPED [ 39%] tests/biomaj_tests.py::TestBiomajDirectHTTPDownload::test_download SKIPPED [ 40%] tests/biomaj_tests.py::TestBiomajDirectHTTPDownload::test_download_get_params_save_as SKIPPED [ 42%] tests/biomaj_tests.py::TestBiomajDirectHTTPDownload::test_download_save_as SKIPPED [ 44%] tests/biomaj_tests.py::TestBiomajDirectHTTPDownload::test_download_post_params SKIPPED [ 45%] tests/biomaj_tests.py::TestBiomajDirectHTTPDownload::test_redirection SKIPPED [ 47%] tests/biomaj_tests.py::TestBiomajFTPDownload::test_ftp_list SKIPPED [ 49%] tests/biomaj_tests.py::TestBiomajFTPDownload::test_ftp_list_error SKIPPED [ 50%] tests/biomaj_tests.py::TestBiomajFTPDownload::test_download SKIPPED [ 52%] tests/biomaj_tests.py::TestBiomajFTPDownload::test_download_skip_check_uncompress SKIPPED [ 54%] tests/biomaj_tests.py::TestBiomajFTPDownload::test_download_in_subdir SKIPPED [ 55%] tests/biomaj_tests.py::TestBiomajFTPDownload::test_download_or_copy SKIPPED [ 57%] tests/biomaj_tests.py::TestBiomajFTPDownload::test_download_or_copy_directhttp SKIPPED [ 59%] tests/biomaj_tests.py::TestBiomajFTPDownload::test_get_more_recent_file SKIPPED [ 60%] tests/biomaj_tests.py::TestBiomajFTPDownload::test_download_retry SKIPPED [ 62%] tests/biomaj_tests.py::TestBiomajFTPDownload::test_ms_server SKIPPED [ 63%] tests/biomaj_tests.py::TestBiomajFTPDownload::test_download_tcp_keepalive SKIPPED [ 65%] tests/biomaj_tests.py::TestBiomajFTPDownload::test_download_ftp_method SKIPPED [ 67%] tests/biomaj_tests.py::TestBiomajFTPSDownload::test_ftps_list SKIPPED [ 68%] tests/biomaj_tests.py::TestBiomajFTPSDownload::test_ftps_list_error SKIPPED [ 70%] tests/biomaj_tests.py::TestBiomajFTPSDownload::test_download SKIPPED [ 72%] tests/biomaj_tests.py::TestBiomajFTPSDownload::test_ftps_list_no_ssl SKIPPED [ 73%] tests/biomaj_tests.py::TestBiomajFTPSDownload::test_download_no_ssl SKIPPED [ 75%] tests/biomaj_tests.py::TestBiomajFTPSDownload::test_download_ssl_certificate SKIPPED [ 77%] tests/biomaj_tests.py::TestBiomajRSYNCDownload::test_rsync_list PASSED [ 78%] tests/biomaj_tests.py::TestBiomajRSYNCDownload::test_rsync_list_error PASSED [ 80%] tests/biomaj_tests.py::TestBiomajRSYNCDownload::test_rsync_match PASSED [ 81%] tests/biomaj_tests.py::TestBiomajRSYNCDownload::test_rsync_download PASSED [ 83%] tests/biomaj_tests.py::TestBiomajRSYNCDownload::test_rsync_general_download PASSED [ 85%] tests/biomaj_tests.py::TestBiomajRSYNCDownload::test_rsync_download_or_copy PASSED [ 86%] tests/biomaj_tests.py::TestBiomajRSYNCDownload::test_rsync_download_in_subdir PASSED [ 88%] tests/biomaj_tests.py::TestBiomajRSYNCDownload::test_rsync_download_skip_check_uncompress PASSED [ 90%] tests/biomaj_tests.py::TestBiomajRSYNCDownload::test_rsync_download_retry PASSED [ 91%] tests/biomaj_tests.py::TestBiomajIRODSDownload::test_irods_list SKIPPED [ 93%] tests/biomaj_tests.py::TestBiomajLocalIRODSDownload::test_irods_download SKIPPED [ 95%] tests/biomaj_tests.py::TestBiomajLocalIRODSDownload::test_irods_download_retry SKIPPED [ 96%] tests/biomaj_tests.py::TestBiomajLocalIRODSDownload::test_irods_download_skip_check_uncompress SKIPPED [ 98%] tests/biomaj_tests.py::TestBiomajLocalIRODSDownload::test_irods_list_error SKIPPED [100%] =============================== warnings summary =============================== tests/biomaj_tests.py:453 /build/reproducible-path/biomaj3-download-3.2.12/tests/biomaj_tests.py:453: SyntaxWarning: invalid escape sequence '\s' "[\w\-\.]+.tar.gz)<\/a>[\s]+([0-9]{2}-[A-Za-z]{3}-[0-9]{4}[\s][0-9]{2}:[0-9]{2})[\s]+([0-9]+[A-Za-z])", tests/biomaj_tests.py:454 /build/reproducible-path/biomaj3-download-3.2.12/tests/biomaj_tests.py:454: SyntaxWarning: invalid escape sequence '\s' "([\w\-\.]+.tar.gz)<\/a>[\s]+([0-9]{2}-[A-Za-z]{3}-[0-9]{4}[\s][0-9]{2}:[0-9]{2})[\s]+([0-9]+[A-Za-z])", ../../../usr/lib/python3/dist-packages/biomaj_core/utils.py:11 /usr/lib/python3/dist-packages/biomaj_core/utils.py:11: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html import pkg_resources tests/biomaj_tests.py::TestBiomajRSYNCDownload::test_rsync_download tests/biomaj_tests.py::TestBiomajRSYNCDownload::test_rsync_download_in_subdir tests/biomaj_tests.py::TestBiomajRSYNCDownload::test_rsync_download_in_subdir /usr/lib/python3/dist-packages/biomaj_core/utils.py:428: DeprecationWarning: The 'warn' method is deprecated, use 'warning' instead logger.warn("archive_check: unable to process check call for '" + str(archivefile) + "'") -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ================= 15 passed, 46 skipped, 6 warnings in 27.31s ================== make[1]: Leaving directory '/build/reproducible-path/biomaj3-download-3.2.12' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_installdirs -O--buildsystem=pybuild dh_auto_install --destdir=debian/python3-biomaj3-download/ -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/biomaj3-download-3.2.12/debian/python3-biomaj3-download /usr/lib/python3/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. By 2026-Mar-03, you need to update your project and remove deprecated calls or your builds will no longer be supported. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self._enforce_underscore(opt, section) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. (Affected: biomaj_download). By 2026-Mar-03, you need to update your project and remove deprecated calls or your builds will no longer be supported. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self._enforce_underscore(opt, section) /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU Affero General Public License v3 or later (AGPLv3+) See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py copying biomaj_download/message/downmessage_pb2.py -> /build/reproducible-path/biomaj3-download-3.2.12/.pybuild/cpython3_3.13_biomaj-download/build/biomaj_download/message running egg_info writing biomaj_download.egg-info/PKG-INFO writing dependency_links to biomaj_download.egg-info/dependency_links.txt writing requirements to biomaj_download.egg-info/requires.txt writing top-level names to biomaj_download.egg-info/top_level.txt reading manifest file 'biomaj_download.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.txt' under directory 'biomaj_core' adding license file 'LICENSE' writing manifest file 'biomaj_download.egg-info/SOURCES.txt' running build_scripts running install_lib creating /build/reproducible-path/biomaj3-download-3.2.12/debian/python3-biomaj3-download/usr/lib/python3.13/dist-packages creating /build/reproducible-path/biomaj3-download-3.2.12/debian/python3-biomaj3-download/usr/lib/python3.13/dist-packages/biomaj_download creating /build/reproducible-path/biomaj3-download-3.2.12/debian/python3-biomaj3-download/usr/lib/python3.13/dist-packages/biomaj_download/download copying /build/reproducible-path/biomaj3-download-3.2.12/.pybuild/cpython3_3.13_biomaj-download/build/biomaj_download/download/__init__.py -> /build/reproducible-path/biomaj3-download-3.2.12/debian/python3-biomaj3-download/usr/lib/python3.13/dist-packages/biomaj_download/download copying /build/reproducible-path/biomaj3-download-3.2.12/.pybuild/cpython3_3.13_biomaj-download/build/biomaj_download/download/curl.py -> /build/reproducible-path/biomaj3-download-3.2.12/debian/python3-biomaj3-download/usr/lib/python3.13/dist-packages/biomaj_download/download copying /build/reproducible-path/biomaj3-download-3.2.12/.pybuild/cpython3_3.13_biomaj-download/build/biomaj_download/download/direct.py -> /build/reproducible-path/biomaj3-download-3.2.12/debian/python3-biomaj3-download/usr/lib/python3.13/dist-packages/biomaj_download/download copying /build/reproducible-path/biomaj3-download-3.2.12/.pybuild/cpython3_3.13_biomaj-download/build/biomaj_download/download/downloadthreads.py -> /build/reproducible-path/biomaj3-download-3.2.12/debian/python3-biomaj3-download/usr/lib/python3.13/dist-packages/biomaj_download/download copying /build/reproducible-path/biomaj3-download-3.2.12/.pybuild/cpython3_3.13_biomaj-download/build/biomaj_download/download/interface.py -> /build/reproducible-path/biomaj3-download-3.2.12/debian/python3-biomaj3-download/usr/lib/python3.13/dist-packages/biomaj_download/download copying /build/reproducible-path/biomaj3-download-3.2.12/.pybuild/cpython3_3.13_biomaj-download/build/biomaj_download/download/localcopy.py -> /build/reproducible-path/biomaj3-download-3.2.12/debian/python3-biomaj3-download/usr/lib/python3.13/dist-packages/biomaj_download/download copying /build/reproducible-path/biomaj3-download-3.2.12/.pybuild/cpython3_3.13_biomaj-download/build/biomaj_download/download/protocolirods.py -> /build/reproducible-path/biomaj3-download-3.2.12/debian/python3-biomaj3-download/usr/lib/python3.13/dist-packages/biomaj_download/download copying /build/reproducible-path/biomaj3-download-3.2.12/.pybuild/cpython3_3.13_biomaj-download/build/biomaj_download/download/rsync.py -> /build/reproducible-path/biomaj3-download-3.2.12/debian/python3-biomaj3-download/usr/lib/python3.13/dist-packages/biomaj_download/download creating /build/reproducible-path/biomaj3-download-3.2.12/debian/python3-biomaj3-download/usr/lib/python3.13/dist-packages/biomaj_download/message copying /build/reproducible-path/biomaj3-download-3.2.12/.pybuild/cpython3_3.13_biomaj-download/build/biomaj_download/message/downmessage_pb2.py -> /build/reproducible-path/biomaj3-download-3.2.12/debian/python3-biomaj3-download/usr/lib/python3.13/dist-packages/biomaj_download/message copying /build/reproducible-path/biomaj3-download-3.2.12/.pybuild/cpython3_3.13_biomaj-download/build/biomaj_download/message/__init__.py -> /build/reproducible-path/biomaj3-download-3.2.12/debian/python3-biomaj3-download/usr/lib/python3.13/dist-packages/biomaj_download/message copying /build/reproducible-path/biomaj3-download-3.2.12/.pybuild/cpython3_3.13_biomaj-download/build/biomaj_download/__init__.py -> /build/reproducible-path/biomaj3-download-3.2.12/debian/python3-biomaj3-download/usr/lib/python3.13/dist-packages/biomaj_download copying /build/reproducible-path/biomaj3-download-3.2.12/.pybuild/cpython3_3.13_biomaj-download/build/biomaj_download/biomaj_download_web.py -> /build/reproducible-path/biomaj3-download-3.2.12/debian/python3-biomaj3-download/usr/lib/python3.13/dist-packages/biomaj_download copying /build/reproducible-path/biomaj3-download-3.2.12/.pybuild/cpython3_3.13_biomaj-download/build/biomaj_download/downloadclient.py -> /build/reproducible-path/biomaj3-download-3.2.12/debian/python3-biomaj3-download/usr/lib/python3.13/dist-packages/biomaj_download copying /build/reproducible-path/biomaj3-download-3.2.12/.pybuild/cpython3_3.13_biomaj-download/build/biomaj_download/downloadservice.py -> /build/reproducible-path/biomaj3-download-3.2.12/debian/python3-biomaj3-download/usr/lib/python3.13/dist-packages/biomaj_download copying /build/reproducible-path/biomaj3-download-3.2.12/.pybuild/cpython3_3.13_biomaj-download/build/biomaj_download/wsgi.py -> /build/reproducible-path/biomaj3-download-3.2.12/debian/python3-biomaj3-download/usr/lib/python3.13/dist-packages/biomaj_download byte-compiling /build/reproducible-path/biomaj3-download-3.2.12/debian/python3-biomaj3-download/usr/lib/python3.13/dist-packages/biomaj_download/download/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/biomaj3-download-3.2.12/debian/python3-biomaj3-download/usr/lib/python3.13/dist-packages/biomaj_download/download/curl.py to curl.cpython-313.pyc byte-compiling /build/reproducible-path/biomaj3-download-3.2.12/debian/python3-biomaj3-download/usr/lib/python3.13/dist-packages/biomaj_download/download/direct.py to direct.cpython-313.pyc byte-compiling /build/reproducible-path/biomaj3-download-3.2.12/debian/python3-biomaj3-download/usr/lib/python3.13/dist-packages/biomaj_download/download/downloadthreads.py to downloadthreads.cpython-313.pyc byte-compiling /build/reproducible-path/biomaj3-download-3.2.12/debian/python3-biomaj3-download/usr/lib/python3.13/dist-packages/biomaj_download/download/interface.py to interface.cpython-313.pyc byte-compiling /build/reproducible-path/biomaj3-download-3.2.12/debian/python3-biomaj3-download/usr/lib/python3.13/dist-packages/biomaj_download/download/localcopy.py to localcopy.cpython-313.pyc byte-compiling /build/reproducible-path/biomaj3-download-3.2.12/debian/python3-biomaj3-download/usr/lib/python3.13/dist-packages/biomaj_download/download/protocolirods.py to protocolirods.cpython-313.pyc byte-compiling /build/reproducible-path/biomaj3-download-3.2.12/debian/python3-biomaj3-download/usr/lib/python3.13/dist-packages/biomaj_download/download/rsync.py to rsync.cpython-313.pyc byte-compiling /build/reproducible-path/biomaj3-download-3.2.12/debian/python3-biomaj3-download/usr/lib/python3.13/dist-packages/biomaj_download/message/downmessage_pb2.py to downmessage_pb2.cpython-313.pyc byte-compiling /build/reproducible-path/biomaj3-download-3.2.12/debian/python3-biomaj3-download/usr/lib/python3.13/dist-packages/biomaj_download/message/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/biomaj3-download-3.2.12/debian/python3-biomaj3-download/usr/lib/python3.13/dist-packages/biomaj_download/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/biomaj3-download-3.2.12/debian/python3-biomaj3-download/usr/lib/python3.13/dist-packages/biomaj_download/biomaj_download_web.py to biomaj_download_web.cpython-313.pyc byte-compiling /build/reproducible-path/biomaj3-download-3.2.12/debian/python3-biomaj3-download/usr/lib/python3.13/dist-packages/biomaj_download/downloadclient.py to downloadclient.cpython-313.pyc byte-compiling /build/reproducible-path/biomaj3-download-3.2.12/debian/python3-biomaj3-download/usr/lib/python3.13/dist-packages/biomaj_download/downloadservice.py to downloadservice.cpython-313.pyc byte-compiling /build/reproducible-path/biomaj3-download-3.2.12/debian/python3-biomaj3-download/usr/lib/python3.13/dist-packages/biomaj_download/wsgi.py to wsgi.cpython-313.pyc running install_egg_info Copying biomaj_download.egg-info to /build/reproducible-path/biomaj3-download-3.2.12/debian/python3-biomaj3-download/usr/lib/python3.13/dist-packages/biomaj_download-3.2.12.egg-info Skipping SOURCES.txt running install_scripts copying build/scripts-3.13/biomaj_download_consumer.py -> /build/reproducible-path/biomaj3-download-3.2.12/debian/python3-biomaj3-download/usr/bin changing mode of /build/reproducible-path/biomaj3-download-3.2.12/debian/python3-biomaj3-download/usr/bin/biomaj_download_consumer.py to 755 debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/biomaj3-download-3.2.12' dh_install sed -i '1s;^;#!/usr/bin/python3\n;' debian/python3-biomaj3-download/usr/bin/biomaj_download_consumer.py make[1]: Leaving directory '/build/reproducible-path/biomaj3-download-3.2.12' dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild I: dh_python3 tools:114: replacing shebang in debian/python3-biomaj3-download/usr/bin/biomaj_download_consumer.py I: dh_python3 pydist:316: Cannot find package that provides python_consul. Please add package that provides it to Build-Depends or add "python_consul python3-consul" line to debian/py3dist-overrides or add proper dependency to Depends by hand and ignore this info. dh_installsystemduser -O--buildsystem=pybuild dh_lintian -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-biomaj3-download' in '../python3-biomaj3-download_3.2.12-2_all.deb'. dpkg-genbuildinfo --build=binary -O../biomaj3-download_3.2.12-2_arm64.buildinfo dpkg-genchanges --build=binary -O../biomaj3-download_3.2.12-2_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/698221 and its subdirectories I: Current time: Thu Jul 31 13:33:26 -12 2025 I: pbuilder-time-stamp: 1754012006 Fri Aug 1 01:33:26 UTC 2025 I: Signing ./b1/biomaj3-download_3.2.12-2_arm64.buildinfo as biomaj3-download_3.2.12-2_arm64.buildinfo.asc Fri Aug 1 01:33:27 UTC 2025 I: Signed ./b1/biomaj3-download_3.2.12-2_arm64.buildinfo as ./b1/biomaj3-download_3.2.12-2_arm64.buildinfo.asc Fri Aug 1 01:33:27 UTC 2025 - build #1 for biomaj3-download/unstable/arm64 on codethink04-arm64 done. Starting cleanup. All cleanup done. Fri Aug 1 01:33:27 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-fsDIeoTF, removing. /srv/reproducible-results/rbuild-debian/r-b-build.UPWU1Oy1: total 16 drwxr-xr-x 2 jenkins jenkins 4096 Aug 1 01:33 b1 drwxr-xr-x 2 jenkins jenkins 4096 Aug 1 01:31 b2 -rw-r--r-- 1 jenkins jenkins 2541 Dec 20 2024 biomaj3-download_3.2.12-2.dsc -rw------- 1 jenkins jenkins 3720 Aug 1 01:31 rbuildlog.vnWeOhR /srv/reproducible-results/rbuild-debian/r-b-build.UPWU1Oy1/b1: total 192 -rw-r--r-- 1 jenkins jenkins 14460 Aug 1 01:33 biomaj3-download_3.2.12-2.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2541 Aug 1 01:33 biomaj3-download_3.2.12-2.dsc -rw-r--r-- 1 jenkins jenkins 7923 Aug 1 01:33 biomaj3-download_3.2.12-2_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 8805 Aug 1 01:33 biomaj3-download_3.2.12-2_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1222 Aug 1 01:33 biomaj3-download_3.2.12-2_arm64.changes -rw-r--r-- 1 jenkins jenkins 1373 Aug 1 01:33 biomaj3-download_3.2.12-2_source.changes -rw-r--r-- 1 jenkins jenkins 91745 Aug 1 01:33 build.log -rw-r--r-- 1 jenkins jenkins 49480 Aug 1 01:33 python3-biomaj3-download_3.2.12-2_all.deb /srv/reproducible-results/rbuild-debian/r-b-build.UPWU1Oy1/b2: total 0 Fri Aug 1 01:33:28 UTC 2025 I: Deleting $TMPDIR on codethink04-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Jul 31 13:32:01 -12 2025 I: pbuilder-time-stamp: 1754011921 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [biomaj3-download_3.2.12-2.dsc] I: copying [./biomaj3-download_3.2.12.orig.tar.xz] I: copying [./biomaj3-download_3.2.12-2.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./biomaj3-download_3.2.12-2.dsc: no acceptable signature found dpkg-source: info: extracting biomaj3-download in biomaj3-download-3.2.12 dpkg-source: info: unpacking biomaj3-download_3.2.12.orig.tar.xz dpkg-source: info: unpacking biomaj3-download_3.2.12-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying locale-sensitive.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/698221/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='d266207391c8401f95cac1a7a099b05d' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='698221' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.UPWU1Oy1/pbuilderrc_QmPH --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.UPWU1Oy1/b1 --logfile b1/build.log biomaj3-download_3.2.12-2.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink04-arm64 6.1.0-37-cloud-arm64 #1 SMP Debian 6.1.140-1 (2025-05-22) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 12 19:25 /bin -> usr/bin I: user script /srv/workspace/pbuilder/698221/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, protobuf-compiler, python3-all, python3-bcrypt, python3-consul, python3-flask, python3-humanfriendly, python3-irodsclient, python3-pytest, python3-pika, python3-prometheus-client, python3-protobuf, python3-pycurl, python3-pymongo, python3-redis, python3-requests, python3-setuptools, python3-yaml, python3-biomaj3-core, python3-biomaj3-zipkin, python3-ftputil, python3-tenacity, python3-simpleeval, rsync dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19964 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on protobuf-compiler; however: Package protobuf-compiler is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-bcrypt; however: Package python3-bcrypt is not installed. pbuilder-satisfydepends-dummy depends on python3-consul; however: Package python3-consul is not installed. pbuilder-satisfydepends-dummy depends on python3-flask; however: Package python3-flask is not installed. pbuilder-satisfydepends-dummy depends on python3-humanfriendly; however: Package python3-humanfriendly is not installed. pbuilder-satisfydepends-dummy depends on python3-irodsclient; however: Package python3-irodsclient is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-pika; however: Package python3-pika is not installed. pbuilder-satisfydepends-dummy depends on python3-prometheus-client; however: Package python3-prometheus-client is not installed. pbuilder-satisfydepends-dummy depends on python3-protobuf; however: Package python3-protobuf is not installed. pbuilder-satisfydepends-dummy depends on python3-pycurl; however: Package python3-pycurl is not installed. pbuilder-satisfydepends-dummy depends on python3-pymongo; however: Package python3-pymongo is not installed. pbuilder-satisfydepends-dummy depends on python3-redis; however: Package python3-redis is not installed. pbuilder-satisfydepends-dummy depends on python3-requests; however: Package python3-requests is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-yaml; however: Package python3-yaml is not installed. pbuilder-satisfydepends-dummy depends on python3-biomaj3-core; however: Package python3-biomaj3-core is not installed. pbuilder-satisfydepends-dummy depends on python3-biomaj3-zipkin; however: Package python3-biomaj3-zipkin is not installed. pbuilder-satisfydepends-dummy depends on python3-ftputil; however: Package python3-ftputil is not installed. pbuilder-satisfydepends-dummy depends on python3-tenacity; however: Package python3-tenacity is not installed. pbuilder-satisfydepends-dummy depends on python3-simpleeval; however: Package python3-simpleeval is not installed. pbuilder-satisfydepends-dummy depends on rsync; however: Package rsync is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbrotli1{a} libcom-err2{a} libcurl3t64-gnutls{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgnutls30t64{a} libgssapi-krb5-2{a} libidn2-0{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap2{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libp11-kit0{a} libpipeline1{a} libpopt0{a} libprotobuf32t64{a} libprotoc32t64{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libtasn1-6{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} libyaml-0-2{a} m4{a} man-db{a} media-types{a} netbase{a} openssl{a} po-debconf{a} protobuf-compiler{a} python3{a} python3-all{a} python3-autocommand{a} python3-bcrypt{a} python3-biomaj3-core{a} python3-biomaj3-zipkin{a} python3-blinker{a} python3-bson{a} python3-certifi{a} python3-chardet{a} python3-charset-normalizer{a} python3-click{a} python3-consul{a} python3-decorator{a} python3-defusedxml{a} python3-dnspython{a} python3-elastic-transport{a} python3-elasticsearch{a} python3-flask{a} python3-ftputil{a} python3-humanfriendly{a} python3-idna{a} python3-inflect{a} python3-iniconfig{a} python3-irodsclient{a} python3-itsdangerous{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-jinja2{a} python3-markupsafe{a} python3-minimal{a} python3-more-itertools{a} python3-packaging{a} python3-pika{a} python3-pkg-resources{a} python3-pluggy{a} python3-prettytable{a} python3-prometheus-client{a} python3-protobuf{a} python3-py-zipkin{a} python3-pycurl{a} python3-pymongo{a} python3-pytest{a} python3-redis{a} python3-requests{a} python3-setuptools{a} python3-simpleeval{a} python3-tenacity{a} python3-typeguard{a} python3-typing-extensions{a} python3-urllib3{a} python3-wcwidth{a} python3-werkzeug{a} python3-yaml{a} python3-zipp{a} python3.13{a} python3.13-minimal{a} readline-common{a} rsync{a} sensible-utils{a} tzdata{a} The following packages are RECOMMENDED but will NOT be installed: curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libprotobuf-dev libsasl2-modules lynx publicsuffix python3-asgiref python3-babel python3-bson-ext python3-cryptography python3-dotenv python3-gridfs python3-h2 python3-httpcore python3-httpx python3-openssl python3-pygments python3-pyinotify python3-pymongo-ext wget 0 packages upgraded, 128 newly installed, 0 to remove and 0 not upgraded. Need to get 30.3 MB of archives. After unpacking 127 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main arm64 libexpat1 arm64 2.7.1-2 [93.3 kB] Get: 2 http://deb.debian.org/debian unstable/main arm64 libpython3.13-minimal arm64 3.13.5-2 [856 kB] Get: 3 http://deb.debian.org/debian unstable/main arm64 python3.13-minimal arm64 3.13.5-2 [2003 kB] Get: 4 http://deb.debian.org/debian unstable/main arm64 python3-minimal arm64 3.13.5-1 [27.2 kB] Get: 5 http://deb.debian.org/debian unstable/main arm64 media-types all 13.0.0 [29.3 kB] Get: 6 http://deb.debian.org/debian unstable/main arm64 netbase all 6.5 [12.4 kB] Get: 7 http://deb.debian.org/debian unstable/main arm64 tzdata all 2025b-4 [260 kB] Get: 8 http://deb.debian.org/debian unstable/main arm64 libffi8 arm64 3.4.8-2 [21.3 kB] Get: 9 http://deb.debian.org/debian unstable/main arm64 readline-common all 8.2-6 [69.4 kB] Get: 10 http://deb.debian.org/debian unstable/main arm64 libreadline8t64 arm64 8.2-6 [159 kB] Get: 11 http://deb.debian.org/debian unstable/main arm64 libpython3.13-stdlib arm64 3.13.5-2 [1892 kB] Get: 12 http://deb.debian.org/debian unstable/main arm64 python3.13 arm64 3.13.5-2 [757 kB] Get: 13 http://deb.debian.org/debian unstable/main arm64 libpython3-stdlib arm64 3.13.5-1 [10.2 kB] Get: 14 http://deb.debian.org/debian unstable/main arm64 python3 arm64 3.13.5-1 [28.2 kB] Get: 15 http://deb.debian.org/debian unstable/main arm64 libpopt0 arm64 1.19+dfsg-2 [42.8 kB] Get: 16 http://deb.debian.org/debian unstable/main arm64 rsync arm64 3.4.1+ds1-5 [409 kB] Get: 17 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.25 [25.0 kB] Get: 18 http://deb.debian.org/debian unstable/main arm64 openssl arm64 3.5.1-1 [1457 kB] Get: 19 http://deb.debian.org/debian unstable/main arm64 ca-certificates all 20250419 [162 kB] Get: 20 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.46-5 [338 kB] Get: 21 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.46-5 [103 kB] Get: 22 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.46-5 [43.7 kB] Get: 23 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.23.1-2 [241 kB] Get: 24 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 25 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-9 [1130 kB] Get: 26 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.41-5 [93.8 kB] Get: 27 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 28 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.1-1 [1453 kB] Get: 29 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.19-8 [285 kB] Get: 30 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3.1 [494 kB] Get: 31 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20240727.1 [60.2 kB] Get: 32 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.17-4 [862 kB] Get: 33 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.23.1-2 [770 kB] Get: 34 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.24.2 [90.9 kB] Get: 35 http://deb.debian.org/debian unstable/main arm64 libtool all 2.5.4-4 [539 kB] Get: 36 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 37 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 38 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 39 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 40 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 41 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 42 http://deb.debian.org/debian unstable/main arm64 libunistring5 arm64 1.3-2 [453 kB] Get: 43 http://deb.debian.org/debian unstable/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-2.1 [630 kB] Get: 44 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.23.1-2 [1611 kB] Get: 45 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 46 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 47 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.24.2 [919 kB] Get: 48 http://deb.debian.org/debian unstable/main arm64 dh-python all 6.20250414 [116 kB] Get: 49 http://deb.debian.org/debian unstable/main arm64 libbrotli1 arm64 1.1.0-2+b7 [308 kB] Get: 50 http://deb.debian.org/debian unstable/main arm64 libcom-err2 arm64 1.47.2-3+b3 [24.9 kB] Get: 51 http://deb.debian.org/debian unstable/main arm64 libidn2-0 arm64 2.3.8-2 [107 kB] Get: 52 http://deb.debian.org/debian unstable/main arm64 libp11-kit0 arm64 0.25.5-3 [409 kB] Get: 53 http://deb.debian.org/debian unstable/main arm64 libtasn1-6 arm64 4.20.0-2 [47.3 kB] Get: 54 http://deb.debian.org/debian unstable/main arm64 libgnutls30t64 arm64 3.8.9-3 [1375 kB] Get: 55 http://deb.debian.org/debian unstable/main arm64 libkrb5support0 arm64 1.21.3-5 [32.4 kB] Get: 56 http://deb.debian.org/debian unstable/main arm64 libk5crypto3 arm64 1.21.3-5 [81.2 kB] Get: 57 http://deb.debian.org/debian unstable/main arm64 libkeyutils1 arm64 1.6.3-6 [9716 B] Get: 58 http://deb.debian.org/debian unstable/main arm64 libkrb5-3 arm64 1.21.3-5 [308 kB] Get: 59 http://deb.debian.org/debian unstable/main arm64 libgssapi-krb5-2 arm64 1.21.3-5 [127 kB] Get: 60 http://deb.debian.org/debian unstable/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-9 [20.1 kB] Get: 61 http://deb.debian.org/debian unstable/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-9 [55.6 kB] Get: 62 http://deb.debian.org/debian unstable/main arm64 libldap2 arm64 2.6.10+dfsg-1 [179 kB] Get: 63 http://deb.debian.org/debian unstable/main arm64 libnghttp2-14 arm64 1.64.0-1.1 [71.4 kB] Get: 64 http://deb.debian.org/debian unstable/main arm64 libnghttp3-9 arm64 1.8.0-1 [63.2 kB] Get: 65 http://deb.debian.org/debian unstable/main arm64 libngtcp2-16 arm64 1.11.0-1 [121 kB] Get: 66 http://deb.debian.org/debian unstable/main arm64 libngtcp2-crypto-gnutls8 arm64 1.11.0-1 [28.2 kB] Get: 67 http://deb.debian.org/debian unstable/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB] Get: 68 http://deb.debian.org/debian unstable/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b5 [56.8 kB] Get: 69 http://deb.debian.org/debian unstable/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Get: 70 http://deb.debian.org/debian unstable/main arm64 libcurl3t64-gnutls arm64 8.14.1-2 [353 kB] Get: 71 http://deb.debian.org/debian unstable/main arm64 libprotobuf32t64 arm64 3.21.12-11 [858 kB] Get: 72 http://deb.debian.org/debian unstable/main arm64 libprotoc32t64 arm64 3.21.12-11 [790 kB] Get: 73 http://deb.debian.org/debian unstable/main arm64 libyaml-0-2 arm64 0.2.5-2 [49.2 kB] Get: 74 http://deb.debian.org/debian unstable/main arm64 protobuf-compiler arm64 3.21.12-11 [84.7 kB] Get: 75 http://deb.debian.org/debian unstable/main arm64 python3-all arm64 3.13.5-1 [1044 B] Get: 76 http://deb.debian.org/debian unstable/main arm64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 77 http://deb.debian.org/debian unstable/main arm64 python3-bcrypt arm64 4.2.0-2.1+b1 [188 kB] Get: 78 http://deb.debian.org/debian unstable/main arm64 python3-more-itertools all 10.7.0-1 [67.4 kB] Get: 79 http://deb.debian.org/debian unstable/main arm64 python3-typing-extensions all 4.13.2-1 [90.5 kB] Get: 80 http://deb.debian.org/debian unstable/main arm64 python3-typeguard all 4.4.2-1 [37.3 kB] Get: 81 http://deb.debian.org/debian unstable/main arm64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 82 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 83 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 84 http://deb.debian.org/debian unstable/main arm64 python3-zipp all 3.21.0-1 [10.6 kB] Get: 85 http://deb.debian.org/debian unstable/main arm64 python3-setuptools all 78.1.1-0.1 [738 kB] Get: 86 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.context all 6.0.1-1 [8276 B] Get: 87 http://deb.debian.org/debian unstable/main arm64 python3-pkg-resources all 78.1.1-0.1 [224 kB] Get: 88 http://deb.debian.org/debian unstable/main arm64 python3-certifi all 2025.1.31+ds-1 [9652 B] Get: 89 http://deb.debian.org/debian unstable/main arm64 python3-urllib3 all 2.3.0-3 [115 kB] Get: 90 http://deb.debian.org/debian unstable/main arm64 python3-elastic-transport all 8.17.1-2 [37.0 kB] Get: 91 http://deb.debian.org/debian unstable/main arm64 python3-elasticsearch all 8.17.2-2 [223 kB] Get: 92 http://deb.debian.org/debian unstable/main arm64 python3-charset-normalizer arm64 3.4.2-1 [120 kB] Get: 93 http://deb.debian.org/debian unstable/main arm64 python3-idna all 3.10-1 [42.0 kB] Get: 94 http://deb.debian.org/debian unstable/main arm64 python3-chardet all 5.2.0+dfsg-2 [108 kB] Get: 95 http://deb.debian.org/debian unstable/main arm64 python3-requests all 2.32.3+dfsg-5 [72.2 kB] Get: 96 http://deb.debian.org/debian unstable/main arm64 python3-biomaj3-core all 3.0.28-4 [25.1 kB] Get: 97 http://deb.debian.org/debian unstable/main arm64 python3-py-zipkin all 1.2.8-2 [36.4 kB] Get: 98 http://deb.debian.org/debian unstable/main arm64 python3-biomaj3-zipkin all 0.2.2-3 [15.1 kB] Get: 99 http://deb.debian.org/debian unstable/main arm64 python3-blinker all 1.9.0-1 [12.6 kB] Get: 100 http://deb.debian.org/debian unstable/main arm64 python3-bson all 4.10.1-6 [87.2 kB] Get: 101 http://deb.debian.org/debian unstable/main arm64 python3-click all 8.2.0+0.really.8.1.8-1 [95.4 kB] Get: 102 http://deb.debian.org/debian unstable/main arm64 python3-consul all 1.5.5-1 [23.9 kB] Get: 103 http://deb.debian.org/debian unstable/main arm64 python3-decorator all 5.2.1-2 [33.0 kB] Get: 104 http://deb.debian.org/debian unstable/main arm64 python3-defusedxml all 0.7.1-3 [43.4 kB] Get: 105 http://deb.debian.org/debian unstable/main arm64 python3-dnspython all 2.7.0-1 [164 kB] Get: 106 http://deb.debian.org/debian unstable/main arm64 python3-itsdangerous all 2.2.0-2 [18.1 kB] Get: 107 http://deb.debian.org/debian unstable/main arm64 python3-markupsafe arm64 2.1.5-1+b4 [14.1 kB] Get: 108 http://deb.debian.org/debian unstable/main arm64 python3-jinja2 all 3.1.6-1 [107 kB] Get: 109 http://deb.debian.org/debian unstable/main arm64 python3-werkzeug all 3.1.3-2 [207 kB] Get: 110 http://deb.debian.org/debian unstable/main arm64 python3-flask all 3.1.1-1 [107 kB] Get: 111 http://deb.debian.org/debian unstable/main arm64 python3-ftputil all 5.1.0-1 [40.4 kB] Get: 112 http://deb.debian.org/debian unstable/main arm64 python3-humanfriendly all 10.0-6 [85.6 kB] Get: 113 http://deb.debian.org/debian unstable/main arm64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 114 http://deb.debian.org/debian unstable/main arm64 python3-wcwidth all 0.2.13+dfsg1-1 [24.9 kB] Get: 115 http://deb.debian.org/debian unstable/main arm64 python3-prettytable all 3.15.1-1 [41.8 kB] Get: 116 http://deb.debian.org/debian unstable/main arm64 python3-irodsclient all 3.0.0-1 [213 kB] Get: 117 http://deb.debian.org/debian unstable/main arm64 python3-packaging all 25.0-1 [56.6 kB] Get: 118 http://deb.debian.org/debian unstable/main arm64 python3-pika all 1.3.2-1 [125 kB] Get: 119 http://deb.debian.org/debian unstable/main arm64 python3-pluggy all 1.5.0-1 [26.9 kB] Get: 120 http://deb.debian.org/debian unstable/main arm64 python3-prometheus-client all 0.21.1+ds1-1 [44.9 kB] Get: 121 http://deb.debian.org/debian unstable/main arm64 python3-protobuf arm64 3.21.12-11 [242 kB] Get: 122 http://deb.debian.org/debian unstable/main arm64 python3-pycurl arm64 7.45.6-1 [69.4 kB] Get: 123 http://deb.debian.org/debian unstable/main arm64 python3-pymongo all 4.10.1-6 [272 kB] Get: 124 http://deb.debian.org/debian unstable/main arm64 python3-pytest all 8.3.5-2 [250 kB] Get: 125 http://deb.debian.org/debian unstable/main arm64 python3-redis all 6.1.0-2 [249 kB] Get: 126 http://deb.debian.org/debian unstable/main arm64 python3-simpleeval all 1.0.3-1 [24.0 kB] Get: 127 http://deb.debian.org/debian unstable/main arm64 python3-tenacity all 8.4.2+really8.4.1-2 [46.0 kB] Get: 128 http://deb.debian.org/debian unstable/main arm64 python3-yaml arm64 6.0.2-1+b2 [122 kB] Fetched 30.3 MB in 0s (105 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19964 files and directories currently installed.) Preparing to unpack .../libexpat1_2.7.1-2_arm64.deb ... Unpacking libexpat1:arm64 (2.7.1-2) ... Selecting previously unselected package libpython3.13-minimal:arm64. Preparing to unpack .../libpython3.13-minimal_3.13.5-2_arm64.deb ... Unpacking libpython3.13-minimal:arm64 (3.13.5-2) ... 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Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.2-6) ... Selecting previously unselected package libpython3.13-stdlib:arm64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.5-2_arm64.deb ... Unpacking libpython3.13-stdlib:arm64 (3.13.5-2) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.5-2_arm64.deb ... Unpacking python3.13 (3.13.5-2) ... 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Unpacking python3-iniconfig (1.1.1-2) ... Selecting previously unselected package python3-wcwidth. Preparing to unpack .../100-python3-wcwidth_0.2.13+dfsg1-1_all.deb ... Unpacking python3-wcwidth (0.2.13+dfsg1-1) ... Selecting previously unselected package python3-prettytable. Preparing to unpack .../101-python3-prettytable_3.15.1-1_all.deb ... Unpacking python3-prettytable (3.15.1-1) ... Selecting previously unselected package python3-irodsclient. Preparing to unpack .../102-python3-irodsclient_3.0.0-1_all.deb ... Unpacking python3-irodsclient (3.0.0-1) ... Selecting previously unselected package python3-packaging. Preparing to unpack .../103-python3-packaging_25.0-1_all.deb ... Unpacking python3-packaging (25.0-1) ... Selecting previously unselected package python3-pika. Preparing to unpack .../104-python3-pika_1.3.2-1_all.deb ... Unpacking python3-pika (1.3.2-1) ... Selecting previously unselected package python3-pluggy. 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Selecting previously unselected package python3-redis. Preparing to unpack .../111-python3-redis_6.1.0-2_all.deb ... Unpacking python3-redis (6.1.0-2) ... Selecting previously unselected package python3-simpleeval. Preparing to unpack .../112-python3-simpleeval_1.0.3-1_all.deb ... Unpacking python3-simpleeval (1.0.3-1) ... Selecting previously unselected package python3-tenacity. Preparing to unpack .../113-python3-tenacity_8.4.2+really8.4.1-2_all.deb ... Unpacking python3-tenacity (8.4.2+really8.4.1-2) ... Selecting previously unselected package python3-yaml. Preparing to unpack .../114-python3-yaml_6.0.2-1+b2_arm64.deb ... Unpacking python3-yaml (6.0.2-1+b2) ... Setting up media-types (13.0.0) ... Setting up libpipeline1:arm64 (1.5.8-1) ... Setting up libprotobuf32t64:arm64 (3.21.12-11) ... Setting up libkeyutils1:arm64 (1.6.3-6) ... Setting up bsdextrautils (2.41-5) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libyaml-0-2:arm64 (0.2.5-2) ... Setting up libdebhelper-perl (13.24.2) ... Setting up libbrotli1:arm64 (1.1.0-2+b7) ... Setting up libmagic1t64:arm64 (1:5.46-5) ... Setting up libnghttp2-14:arm64 (1.64.0-1.1) ... Setting up gettext-base (0.23.1-2) ... Setting up m4 (1.4.19-8) ... Setting up libcom-err2:arm64 (1.47.2-3+b3) ... Setting up file (1:5.46-5) ... Setting up libelf1t64:arm64 (0.192-4) ... Setting up libkrb5support0:arm64 (1.21.3-5) ... Setting up libsasl2-modules-db:arm64 (2.1.28+dfsg1-9) ... Setting up tzdata (2025b-4) ... Current default time zone: 'Etc/UTC' Local time is now: Fri Aug 1 01:32:20 UTC 2025. Universal Time is now: Fri Aug 1 01:32:20 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20240727.1) ... Setting up libunistring5:arm64 (1.3-2) ... Setting up autopoint (0.23.1-2) ... Setting up libk5crypto3:arm64 (1.21.3-5) ... Setting up libsasl2-2:arm64 (2.1.28+dfsg1-9) ... Setting up autoconf (2.72-3.1) ... Setting up libnghttp3-9:arm64 (1.8.0-1) ... Setting up libffi8:arm64 (3.4.8-2) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.25) ... Setting up libuchardet0:arm64 (0.0.8-1+b2) ... Setting up libtasn1-6:arm64 (4.20.0-2) ... Setting up netbase (6.5) ... Setting up libngtcp2-16:arm64 (1.11.0-1) ... Setting up libkrb5-3:arm64 (1.21.3-5) ... Setting up libssh2-1t64:arm64 (1.11.1-1) ... Setting up libprotoc32t64:arm64 (3.21.12-11) ... Setting up openssl (3.5.1-1) ... Setting up readline-common (8.2-6) ... Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-2.1) ... Setting up libldap2:arm64 (2.6.10+dfsg-1) ... Setting up libpopt0:arm64 (1.19+dfsg-2) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up gettext (0.23.1-2) ... Setting up protobuf-compiler (3.21.12-11) ... Setting up libtool (2.5.4-4) ... Setting up libidn2-0:arm64 (2.3.8-2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 150 added, 0 removed; done. Setting up libp11-kit0:arm64 (0.25.5-3) ... Setting up libgssapi-krb5-2:arm64 (1.21.3-5) ... Setting up libreadline8t64:arm64 (8.2-6) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up groff-base (1.23.0-9) ... Setting up libpython3.13-stdlib:arm64 (3.13.5-2) ... Setting up rsync (3.4.1+ds1-5) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Setting up libpython3-stdlib:arm64 (3.13.5-1) ... Setting up libgnutls30t64:arm64 (3.8.9-3) ... Setting up python3.13 (3.13.5-2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpsl5t64:arm64 (0.21.2-1.1+b1) ... Setting up python3 (3.13.5-1) ... Setting up python3-zipp (3.21.0-1) ... Setting up python3-click (8.2.0+0.really.8.1.8-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up python3-markupsafe (2.1.5-1+b4) ... Setting up python3-simpleeval (1.0.3-1) ... Setting up python3-bson (4.10.1-6) ... Setting up python3-decorator (5.2.1-2) ... Setting up python3-jinja2 (3.1.6-1) ... Setting up python3-packaging (25.0-1) ... Setting up python3-chardet (5.2.0+dfsg-2) ... Setting up python3-wcwidth (0.2.13+dfsg1-1) ... Setting up python3-humanfriendly (10.0-6) ... Setting up python3-certifi (2025.1.31+ds-1) ... Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up python3-werkzeug (3.1.3-2) ... Setting up python3-idna (3.10-1) ... Setting up python3-typing-extensions (4.13.2-1) ... Setting up python3-redis (6.1.0-2) ... Setting up python3-urllib3 (2.3.0-3) ... Setting up python3-pluggy (1.5.0-1) ... Setting up python3-dnspython (2.7.0-1) ... Setting up python3-py-zipkin (1.2.8-2) ... Setting up python3-protobuf (3.21.12-11) ... Setting up python3-pymongo (4.10.1-6) ... Setting up python3-prettytable (3.15.1-1) ... Setting up libngtcp2-crypto-gnutls8:arm64 (1.11.0-1) ... Setting up python3-blinker (1.9.0-1) ... Setting up dh-python (6.20250414) ... Setting up python3-more-itertools (10.7.0-1) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up python3-elastic-transport (8.17.1-2) ... Setting up python3-ftputil (5.1.0-1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.1-1) ... Setting up python3-defusedxml (0.7.1-3) ... Setting up python3-charset-normalizer (3.4.2-1) ... Setting up python3-pika (1.3.2-1) ... Setting up python3-pytest (8.3.5-2) ... Setting up python3-tenacity (8.4.2+really8.4.1-2) ... Setting up python3-bcrypt (4.2.0-2.1+b1) ... Setting up python3-typeguard (4.4.2-1) ... Setting up libcurl3t64-gnutls:arm64 (8.14.1-2) ... Setting up python3-itsdangerous (2.2.0-2) ... Setting up python3-all (3.13.5-1) ... Setting up python3-yaml (6.0.2-1+b2) ... Setting up debhelper (13.24.2) ... Setting up python3-inflect (7.3.1-2) ... Setting up python3-prometheus-client (0.21.1+ds1-1) ... Setting up python3-pycurl (7.45.6-1) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-requests (2.32.3+dfsg-5) ... Setting up python3-consul (1.5.5-1) ... Setting up python3-irodsclient (3.0.0-1) ... /usr/lib/python3/dist-packages/irods/test/admin_test.py:379: SyntaxWarning: invalid escape sequence '\]' new_password = """abc123!"#$%&'()*+,-./:;<=>?@[\]^_`{|}~Z""" /usr/lib/python3/dist-packages/irods/test/admin_test.py:406: SyntaxWarning: invalid escape sequence '\]' new_comment = """comment-abc123!"#$%&'()*+,-./:;<=>?@[\]^_{|}~Z""" # omitting backtick due to #170 /usr/lib/python3/dist-packages/irods/test/admin_test.py:425: SyntaxWarning: invalid escape sequence '\]' new_info = """info-abc123!"#$%&'()*+,-./:;<=>?@[\]^_{|}~Z""" # omitting backtick due to #170 /usr/lib/python3/dist-packages/irods/test/data_obj_test.py:37: SyntaxWarning: invalid escape sequence '\.' localhost_with_optional_domain_pattern = re.compile("localhost(\.\S\S*)?$") /usr/lib/python3/dist-packages/irods/test/data_obj_test.py:420: SyntaxWarning: invalid escape sequence '\s' NumThreadsRegex = re.compile("^num_threads\s*=\s*(\d+)", re.MULTILINE) /usr/lib/python3/dist-packages/irods/test/data_obj_test.py:604: SyntaxWarning: invalid escape sequence '\s' "No\s+Checksum\s+Available.+\s+Replica\s\[(\d+)\]", re.IGNORECASE /usr/lib/python3/dist-packages/irods/test/data_obj_test.py:1049: SyntaxWarning: invalid escape sequence '\S' re.finditer("redirect_to_host = (\S+)", search_text), /usr/lib/python3/dist-packages/irods/test/data_obj_test.py:1050: SyntaxWarning: invalid escape sequence '\S' re.finditer("target_host = (\S+)", search_text), /usr/lib/python3/dist-packages/irods/test/rule_test.py:423: SyntaxWarning: invalid escape sequence '\[' self.assertRegexpMatches(lines[0], ".*\[Hello world!\]") /usr/lib/python3/dist-packages/irods/test/rule_test.py:445: SyntaxWarning: invalid escape sequence '\[' self.assertRegexpMatches(lines[0], "\[STRING\]\[\]") /usr/lib/python3/dist-packages/irods/test/rule_test.py:446: SyntaxWarning: invalid escape sequence '\[' self.assertRegexpMatches(lines[1], "\[STRING\]\[\]") /usr/lib/python3/dist-packages/irods/test/rule_test.py:455: SyntaxWarning: invalid escape sequence '\[' self.assertRegexpMatches(lines[0], "\[INTEGER\]\[5\]") /usr/lib/python3/dist-packages/irods/test/rule_test.py:456: SyntaxWarning: invalid escape sequence '\[' self.assertRegexpMatches(lines[1], "\[STRING\]\[A String\]") Setting up python3-pkg-resources (78.1.1-0.1) ... Setting up python3-elasticsearch (8.17.2-2) ... Setting up python3-setuptools (78.1.1-0.1) ... Setting up python3-biomaj3-zipkin (0.2.2-3) ... Setting up python3-flask (3.1.1-1) ... Setting up python3-biomaj3-core (3.0.28-4) ... Processing triggers for libc-bin (2.41-11) ... Processing triggers for ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/biomaj3-download-3.2.12/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../biomaj3-download_3.2.12-2_source.changes dpkg-buildpackage: info: source package biomaj3-download dpkg-buildpackage: info: source version 3.2.12-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py clean /usr/lib/python3/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. By 2026-Mar-03, you need to update your project and remove deprecated calls or your builds will no longer be supported. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self._enforce_underscore(opt, section) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. (Affected: biomaj_download). By 2026-Mar-03, you need to update your project and remove deprecated calls or your builds will no longer be supported. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self._enforce_underscore(opt, section) /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU Affero General Public License v3 or later (AGPLv3+) See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running clean removing '/build/reproducible-path/biomaj3-download-3.2.12/.pybuild/cpython3_3.13_biomaj-download/build' (and everything under it) 'build/bdist.linux-aarch64' does not exist -- can't clean it 'build/scripts-3.13' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild debian/rules override_dh_clean make[1]: Entering directory '/build/reproducible-path/biomaj3-download-3.2.12' dh_clean rm -rf biomaj_download.egg-info if [ -e biomaj_download/message/downmessage_pb2.py.bak ] ; then mv biomaj_download/message/downmessage_pb2.py.bak biomaj_download/message/downmessage_pb2.py; fi make[1]: Leaving directory '/build/reproducible-path/biomaj3-download-3.2.12' debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/biomaj3-download-3.2.12' cp -a biomaj_download/message/downmessage_pb2.py biomaj_download/message/downmessage_pb2.py.bak dh_auto_configure I: pybuild base:311: python3.13 setup.py config /usr/lib/python3/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. By 2026-Mar-03, you need to update your project and remove deprecated calls or your builds will no longer be supported. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self._enforce_underscore(opt, section) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. (Affected: biomaj_download). By 2026-Mar-03, you need to update your project and remove deprecated calls or your builds will no longer be supported. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self._enforce_underscore(opt, section) /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU Affero General Public License v3 or later (AGPLv3+) See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running config make[1]: Leaving directory '/build/reproducible-path/biomaj3-download-3.2.12' debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/biomaj3-download-3.2.12' cd biomaj_download/message && protoc --python_out=. downmessage.proto dh_auto_build I: pybuild base:311: /usr/bin/python3 setup.py build /usr/lib/python3/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. By 2026-Mar-03, you need to update your project and remove deprecated calls or your builds will no longer be supported. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self._enforce_underscore(opt, section) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. (Affected: biomaj_download). By 2026-Mar-03, you need to update your project and remove deprecated calls or your builds will no longer be supported. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self._enforce_underscore(opt, section) /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU Affero General Public License v3 or later (AGPLv3+) See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running build running build_py creating /build/reproducible-path/biomaj3-download-3.2.12/.pybuild/cpython3_3.13_biomaj-download/build/biomaj_download copying biomaj_download/wsgi.py -> /build/reproducible-path/biomaj3-download-3.2.12/.pybuild/cpython3_3.13_biomaj-download/build/biomaj_download copying biomaj_download/downloadservice.py -> /build/reproducible-path/biomaj3-download-3.2.12/.pybuild/cpython3_3.13_biomaj-download/build/biomaj_download copying biomaj_download/downloadclient.py -> /build/reproducible-path/biomaj3-download-3.2.12/.pybuild/cpython3_3.13_biomaj-download/build/biomaj_download copying biomaj_download/biomaj_download_web.py -> /build/reproducible-path/biomaj3-download-3.2.12/.pybuild/cpython3_3.13_biomaj-download/build/biomaj_download copying biomaj_download/__init__.py -> /build/reproducible-path/biomaj3-download-3.2.12/.pybuild/cpython3_3.13_biomaj-download/build/biomaj_download creating /build/reproducible-path/biomaj3-download-3.2.12/.pybuild/cpython3_3.13_biomaj-download/build/biomaj_download/message copying biomaj_download/message/downmessage_pb2.py -> /build/reproducible-path/biomaj3-download-3.2.12/.pybuild/cpython3_3.13_biomaj-download/build/biomaj_download/message copying biomaj_download/message/__init__.py -> /build/reproducible-path/biomaj3-download-3.2.12/.pybuild/cpython3_3.13_biomaj-download/build/biomaj_download/message creating /build/reproducible-path/biomaj3-download-3.2.12/.pybuild/cpython3_3.13_biomaj-download/build/biomaj_download/download copying biomaj_download/download/rsync.py -> /build/reproducible-path/biomaj3-download-3.2.12/.pybuild/cpython3_3.13_biomaj-download/build/biomaj_download/download copying biomaj_download/download/protocolirods.py -> /build/reproducible-path/biomaj3-download-3.2.12/.pybuild/cpython3_3.13_biomaj-download/build/biomaj_download/download copying biomaj_download/download/localcopy.py -> /build/reproducible-path/biomaj3-download-3.2.12/.pybuild/cpython3_3.13_biomaj-download/build/biomaj_download/download copying biomaj_download/download/interface.py -> /build/reproducible-path/biomaj3-download-3.2.12/.pybuild/cpython3_3.13_biomaj-download/build/biomaj_download/download copying biomaj_download/download/downloadthreads.py -> /build/reproducible-path/biomaj3-download-3.2.12/.pybuild/cpython3_3.13_biomaj-download/build/biomaj_download/download copying biomaj_download/download/direct.py -> /build/reproducible-path/biomaj3-download-3.2.12/.pybuild/cpython3_3.13_biomaj-download/build/biomaj_download/download copying biomaj_download/download/curl.py -> /build/reproducible-path/biomaj3-download-3.2.12/.pybuild/cpython3_3.13_biomaj-download/build/biomaj_download/download copying biomaj_download/download/__init__.py -> /build/reproducible-path/biomaj3-download-3.2.12/.pybuild/cpython3_3.13_biomaj-download/build/biomaj_download/download running egg_info creating biomaj_download.egg-info writing biomaj_download.egg-info/PKG-INFO writing dependency_links to biomaj_download.egg-info/dependency_links.txt writing requirements to biomaj_download.egg-info/requires.txt writing top-level names to biomaj_download.egg-info/top_level.txt writing manifest file 'biomaj_download.egg-info/SOURCES.txt' reading manifest file 'biomaj_download.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.txt' under directory 'biomaj_core' adding license file 'LICENSE' writing manifest file 'biomaj_download.egg-info/SOURCES.txt' running build_scripts creating build/scripts-3.13 copying and adjusting bin/biomaj_download_consumer.py -> build/scripts-3.13 changing mode of build/scripts-3.13/biomaj_download_consumer.py from 644 to 755 make[1]: Leaving directory '/build/reproducible-path/biomaj3-download-3.2.12' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/biomaj3-download-3.2.12' LOCAL_IRODS=0 NETWORK=0 python3 -m pytest -v tests/biomaj_tests.py ============================= test session starts ============================== platform linux -- Python 3.13.5, pytest-8.3.5, pluggy-1.5.0 -- /usr/bin/python3 cachedir: .pytest_cache rootdir: /build/reproducible-path/biomaj3-download-3.2.12 plugins: typeguard-4.4.2 collecting ... collected 61 items tests/biomaj_tests.py::TestDownloadInterface::test_retry_parsing PASSED [ 1%] tests/biomaj_tests.py::TestBiomajLocalDownload::test_local_list PASSED [ 3%] tests/biomaj_tests.py::TestBiomajLocalDownload::test_local_list_error PASSED [ 4%] tests/biomaj_tests.py::TestBiomajLocalDownload::test_local_download PASSED [ 6%] tests/biomaj_tests.py::TestBiomajLocalDownload::test_local_download_in_subdir PASSED [ 8%] tests/biomaj_tests.py::TestBiomajLocalDownload::test_local_download_hardlinks PASSED [ 9%] tests/biomaj_tests.py::TestBiomajHTTPDownload::test_http_list SKIPPED [ 11%] tests/biomaj_tests.py::TestBiomajHTTPDownload::test_http_list_error SKIPPED [ 13%] tests/biomaj_tests.py::TestBiomajHTTPDownload::test_http_list_dateregexp SKIPPED [ 14%] tests/biomaj_tests.py::TestBiomajHTTPDownload::test_http_download_no_size SKIPPED [ 16%] tests/biomaj_tests.py::TestBiomajHTTPDownload::test_http_download_no_date SKIPPED [ 18%] tests/biomaj_tests.py::TestBiomajHTTPDownload::test_http_download SKIPPED [ 19%] tests/biomaj_tests.py::TestBiomajHTTPDownload::test_http_download_in_subdir SKIPPED [ 21%] tests/biomaj_tests.py::TestBiomajHTTPDownload::test_redirection SKIPPED [ 22%] tests/biomaj_tests.py::TestBiomajHTTPSDownload::test_download SKIPPED [ 24%] tests/biomaj_tests.py::TestBiomajSFTPDownload::test_list_error SKIPPED [ 26%] tests/biomaj_tests.py::TestBiomajSFTPDownload::test_download SKIPPED [ 27%] tests/biomaj_tests.py::TestBiomajDirectFTPDownload::test_ftp_list SKIPPED [ 29%] tests/biomaj_tests.py::TestBiomajDirectFTPDownload::test_ftp_list_error SKIPPED [ 31%] tests/biomaj_tests.py::TestBiomajDirectFTPDownload::test_download SKIPPED [ 32%] tests/biomaj_tests.py::TestBiomajDirectFTPSDownload::test_ftps_list SKIPPED [ 34%] tests/biomaj_tests.py::TestBiomajDirectFTPSDownload::test_download SKIPPED [ 36%] tests/biomaj_tests.py::TestBiomajDirectHTTPDownload::test_http_list SKIPPED [ 37%] tests/biomaj_tests.py::TestBiomajDirectHTTPDownload::test_http_list_error SKIPPED [ 39%] tests/biomaj_tests.py::TestBiomajDirectHTTPDownload::test_download SKIPPED [ 40%] tests/biomaj_tests.py::TestBiomajDirectHTTPDownload::test_download_get_params_save_as SKIPPED [ 42%] tests/biomaj_tests.py::TestBiomajDirectHTTPDownload::test_download_save_as SKIPPED [ 44%] tests/biomaj_tests.py::TestBiomajDirectHTTPDownload::test_download_post_params SKIPPED [ 45%] tests/biomaj_tests.py::TestBiomajDirectHTTPDownload::test_redirection SKIPPED [ 47%] tests/biomaj_tests.py::TestBiomajFTPDownload::test_ftp_list SKIPPED [ 49%] tests/biomaj_tests.py::TestBiomajFTPDownload::test_ftp_list_error SKIPPED [ 50%] tests/biomaj_tests.py::TestBiomajFTPDownload::test_download SKIPPED [ 52%] tests/biomaj_tests.py::TestBiomajFTPDownload::test_download_skip_check_uncompress SKIPPED [ 54%] tests/biomaj_tests.py::TestBiomajFTPDownload::test_download_in_subdir SKIPPED [ 55%] tests/biomaj_tests.py::TestBiomajFTPDownload::test_download_or_copy SKIPPED [ 57%] tests/biomaj_tests.py::TestBiomajFTPDownload::test_download_or_copy_directhttp SKIPPED [ 59%] tests/biomaj_tests.py::TestBiomajFTPDownload::test_get_more_recent_file SKIPPED [ 60%] tests/biomaj_tests.py::TestBiomajFTPDownload::test_download_retry SKIPPED [ 62%] tests/biomaj_tests.py::TestBiomajFTPDownload::test_ms_server SKIPPED [ 63%] tests/biomaj_tests.py::TestBiomajFTPDownload::test_download_tcp_keepalive SKIPPED [ 65%] tests/biomaj_tests.py::TestBiomajFTPDownload::test_download_ftp_method SKIPPED [ 67%] tests/biomaj_tests.py::TestBiomajFTPSDownload::test_ftps_list SKIPPED [ 68%] tests/biomaj_tests.py::TestBiomajFTPSDownload::test_ftps_list_error SKIPPED [ 70%] tests/biomaj_tests.py::TestBiomajFTPSDownload::test_download SKIPPED [ 72%] tests/biomaj_tests.py::TestBiomajFTPSDownload::test_ftps_list_no_ssl SKIPPED [ 73%] tests/biomaj_tests.py::TestBiomajFTPSDownload::test_download_no_ssl SKIPPED [ 75%] tests/biomaj_tests.py::TestBiomajFTPSDownload::test_download_ssl_certificate SKIPPED [ 77%] tests/biomaj_tests.py::TestBiomajRSYNCDownload::test_rsync_list PASSED [ 78%] tests/biomaj_tests.py::TestBiomajRSYNCDownload::test_rsync_list_error PASSED [ 80%] tests/biomaj_tests.py::TestBiomajRSYNCDownload::test_rsync_match PASSED [ 81%] tests/biomaj_tests.py::TestBiomajRSYNCDownload::test_rsync_download PASSED [ 83%] tests/biomaj_tests.py::TestBiomajRSYNCDownload::test_rsync_general_download PASSED [ 85%] tests/biomaj_tests.py::TestBiomajRSYNCDownload::test_rsync_download_or_copy PASSED [ 86%] tests/biomaj_tests.py::TestBiomajRSYNCDownload::test_rsync_download_in_subdir PASSED [ 88%] tests/biomaj_tests.py::TestBiomajRSYNCDownload::test_rsync_download_skip_check_uncompress PASSED [ 90%] tests/biomaj_tests.py::TestBiomajRSYNCDownload::test_rsync_download_retry PASSED [ 91%] tests/biomaj_tests.py::TestBiomajIRODSDownload::test_irods_list SKIPPED [ 93%] tests/biomaj_tests.py::TestBiomajLocalIRODSDownload::test_irods_download SKIPPED [ 95%] tests/biomaj_tests.py::TestBiomajLocalIRODSDownload::test_irods_download_retry SKIPPED [ 96%] tests/biomaj_tests.py::TestBiomajLocalIRODSDownload::test_irods_download_skip_check_uncompress SKIPPED [ 98%] tests/biomaj_tests.py::TestBiomajLocalIRODSDownload::test_irods_list_error SKIPPED [100%] =============================== warnings summary =============================== tests/biomaj_tests.py:453 /build/reproducible-path/biomaj3-download-3.2.12/tests/biomaj_tests.py:453: SyntaxWarning: invalid escape sequence '\s' "[\w\-\.]+.tar.gz)<\/a>[\s]+([0-9]{2}-[A-Za-z]{3}-[0-9]{4}[\s][0-9]{2}:[0-9]{2})[\s]+([0-9]+[A-Za-z])", tests/biomaj_tests.py:454 /build/reproducible-path/biomaj3-download-3.2.12/tests/biomaj_tests.py:454: SyntaxWarning: invalid escape sequence '\s' "([\w\-\.]+.tar.gz)<\/a>[\s]+([0-9]{2}-[A-Za-z]{3}-[0-9]{4}[\s][0-9]{2}:[0-9]{2})[\s]+([0-9]+[A-Za-z])", ../../../usr/lib/python3/dist-packages/biomaj_core/utils.py:11 /usr/lib/python3/dist-packages/biomaj_core/utils.py:11: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html import pkg_resources tests/biomaj_tests.py::TestBiomajRSYNCDownload::test_rsync_download tests/biomaj_tests.py::TestBiomajRSYNCDownload::test_rsync_download_in_subdir tests/biomaj_tests.py::TestBiomajRSYNCDownload::test_rsync_download_in_subdir /usr/lib/python3/dist-packages/biomaj_core/utils.py:428: DeprecationWarning: The 'warn' method is deprecated, use 'warning' instead logger.warn("archive_check: unable to process check call for '" + str(archivefile) + "'") -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ================= 15 passed, 46 skipped, 6 warnings in 27.31s ================== make[1]: Leaving directory '/build/reproducible-path/biomaj3-download-3.2.12' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_installdirs -O--buildsystem=pybuild dh_auto_install --destdir=debian/python3-biomaj3-download/ -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/biomaj3-download-3.2.12/debian/python3-biomaj3-download /usr/lib/python3/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. By 2026-Mar-03, you need to update your project and remove deprecated calls or your builds will no longer be supported. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self._enforce_underscore(opt, section) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. (Affected: biomaj_download). By 2026-Mar-03, you need to update your project and remove deprecated calls or your builds will no longer be supported. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self._enforce_underscore(opt, section) /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU Affero General Public License v3 or later (AGPLv3+) See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py copying biomaj_download/message/downmessage_pb2.py -> /build/reproducible-path/biomaj3-download-3.2.12/.pybuild/cpython3_3.13_biomaj-download/build/biomaj_download/message running egg_info writing biomaj_download.egg-info/PKG-INFO writing dependency_links to biomaj_download.egg-info/dependency_links.txt writing requirements to biomaj_download.egg-info/requires.txt writing top-level names to biomaj_download.egg-info/top_level.txt reading manifest file 'biomaj_download.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.txt' under directory 'biomaj_core' adding license file 'LICENSE' writing manifest file 'biomaj_download.egg-info/SOURCES.txt' running build_scripts running install_lib creating /build/reproducible-path/biomaj3-download-3.2.12/debian/python3-biomaj3-download/usr/lib/python3.13/dist-packages creating /build/reproducible-path/biomaj3-download-3.2.12/debian/python3-biomaj3-download/usr/lib/python3.13/dist-packages/biomaj_download creating /build/reproducible-path/biomaj3-download-3.2.12/debian/python3-biomaj3-download/usr/lib/python3.13/dist-packages/biomaj_download/download copying /build/reproducible-path/biomaj3-download-3.2.12/.pybuild/cpython3_3.13_biomaj-download/build/biomaj_download/download/__init__.py -> /build/reproducible-path/biomaj3-download-3.2.12/debian/python3-biomaj3-download/usr/lib/python3.13/dist-packages/biomaj_download/download copying /build/reproducible-path/biomaj3-download-3.2.12/.pybuild/cpython3_3.13_biomaj-download/build/biomaj_download/download/curl.py -> /build/reproducible-path/biomaj3-download-3.2.12/debian/python3-biomaj3-download/usr/lib/python3.13/dist-packages/biomaj_download/download copying /build/reproducible-path/biomaj3-download-3.2.12/.pybuild/cpython3_3.13_biomaj-download/build/biomaj_download/download/direct.py -> /build/reproducible-path/biomaj3-download-3.2.12/debian/python3-biomaj3-download/usr/lib/python3.13/dist-packages/biomaj_download/download copying /build/reproducible-path/biomaj3-download-3.2.12/.pybuild/cpython3_3.13_biomaj-download/build/biomaj_download/download/downloadthreads.py -> /build/reproducible-path/biomaj3-download-3.2.12/debian/python3-biomaj3-download/usr/lib/python3.13/dist-packages/biomaj_download/download copying /build/reproducible-path/biomaj3-download-3.2.12/.pybuild/cpython3_3.13_biomaj-download/build/biomaj_download/download/interface.py -> /build/reproducible-path/biomaj3-download-3.2.12/debian/python3-biomaj3-download/usr/lib/python3.13/dist-packages/biomaj_download/download copying /build/reproducible-path/biomaj3-download-3.2.12/.pybuild/cpython3_3.13_biomaj-download/build/biomaj_download/download/localcopy.py -> /build/reproducible-path/biomaj3-download-3.2.12/debian/python3-biomaj3-download/usr/lib/python3.13/dist-packages/biomaj_download/download copying /build/reproducible-path/biomaj3-download-3.2.12/.pybuild/cpython3_3.13_biomaj-download/build/biomaj_download/download/protocolirods.py -> /build/reproducible-path/biomaj3-download-3.2.12/debian/python3-biomaj3-download/usr/lib/python3.13/dist-packages/biomaj_download/download copying /build/reproducible-path/biomaj3-download-3.2.12/.pybuild/cpython3_3.13_biomaj-download/build/biomaj_download/download/rsync.py -> /build/reproducible-path/biomaj3-download-3.2.12/debian/python3-biomaj3-download/usr/lib/python3.13/dist-packages/biomaj_download/download creating /build/reproducible-path/biomaj3-download-3.2.12/debian/python3-biomaj3-download/usr/lib/python3.13/dist-packages/biomaj_download/message copying /build/reproducible-path/biomaj3-download-3.2.12/.pybuild/cpython3_3.13_biomaj-download/build/biomaj_download/message/downmessage_pb2.py -> /build/reproducible-path/biomaj3-download-3.2.12/debian/python3-biomaj3-download/usr/lib/python3.13/dist-packages/biomaj_download/message copying /build/reproducible-path/biomaj3-download-3.2.12/.pybuild/cpython3_3.13_biomaj-download/build/biomaj_download/message/__init__.py -> /build/reproducible-path/biomaj3-download-3.2.12/debian/python3-biomaj3-download/usr/lib/python3.13/dist-packages/biomaj_download/message copying /build/reproducible-path/biomaj3-download-3.2.12/.pybuild/cpython3_3.13_biomaj-download/build/biomaj_download/__init__.py -> /build/reproducible-path/biomaj3-download-3.2.12/debian/python3-biomaj3-download/usr/lib/python3.13/dist-packages/biomaj_download copying /build/reproducible-path/biomaj3-download-3.2.12/.pybuild/cpython3_3.13_biomaj-download/build/biomaj_download/biomaj_download_web.py -> /build/reproducible-path/biomaj3-download-3.2.12/debian/python3-biomaj3-download/usr/lib/python3.13/dist-packages/biomaj_download copying /build/reproducible-path/biomaj3-download-3.2.12/.pybuild/cpython3_3.13_biomaj-download/build/biomaj_download/downloadclient.py -> /build/reproducible-path/biomaj3-download-3.2.12/debian/python3-biomaj3-download/usr/lib/python3.13/dist-packages/biomaj_download copying /build/reproducible-path/biomaj3-download-3.2.12/.pybuild/cpython3_3.13_biomaj-download/build/biomaj_download/downloadservice.py -> /build/reproducible-path/biomaj3-download-3.2.12/debian/python3-biomaj3-download/usr/lib/python3.13/dist-packages/biomaj_download copying /build/reproducible-path/biomaj3-download-3.2.12/.pybuild/cpython3_3.13_biomaj-download/build/biomaj_download/wsgi.py -> /build/reproducible-path/biomaj3-download-3.2.12/debian/python3-biomaj3-download/usr/lib/python3.13/dist-packages/biomaj_download byte-compiling /build/reproducible-path/biomaj3-download-3.2.12/debian/python3-biomaj3-download/usr/lib/python3.13/dist-packages/biomaj_download/download/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/biomaj3-download-3.2.12/debian/python3-biomaj3-download/usr/lib/python3.13/dist-packages/biomaj_download/download/curl.py to curl.cpython-313.pyc byte-compiling /build/reproducible-path/biomaj3-download-3.2.12/debian/python3-biomaj3-download/usr/lib/python3.13/dist-packages/biomaj_download/download/direct.py to direct.cpython-313.pyc byte-compiling /build/reproducible-path/biomaj3-download-3.2.12/debian/python3-biomaj3-download/usr/lib/python3.13/dist-packages/biomaj_download/download/downloadthreads.py to downloadthreads.cpython-313.pyc byte-compiling /build/reproducible-path/biomaj3-download-3.2.12/debian/python3-biomaj3-download/usr/lib/python3.13/dist-packages/biomaj_download/download/interface.py to interface.cpython-313.pyc byte-compiling /build/reproducible-path/biomaj3-download-3.2.12/debian/python3-biomaj3-download/usr/lib/python3.13/dist-packages/biomaj_download/download/localcopy.py to localcopy.cpython-313.pyc byte-compiling /build/reproducible-path/biomaj3-download-3.2.12/debian/python3-biomaj3-download/usr/lib/python3.13/dist-packages/biomaj_download/download/protocolirods.py to protocolirods.cpython-313.pyc byte-compiling /build/reproducible-path/biomaj3-download-3.2.12/debian/python3-biomaj3-download/usr/lib/python3.13/dist-packages/biomaj_download/download/rsync.py to rsync.cpython-313.pyc byte-compiling /build/reproducible-path/biomaj3-download-3.2.12/debian/python3-biomaj3-download/usr/lib/python3.13/dist-packages/biomaj_download/message/downmessage_pb2.py to downmessage_pb2.cpython-313.pyc byte-compiling /build/reproducible-path/biomaj3-download-3.2.12/debian/python3-biomaj3-download/usr/lib/python3.13/dist-packages/biomaj_download/message/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/biomaj3-download-3.2.12/debian/python3-biomaj3-download/usr/lib/python3.13/dist-packages/biomaj_download/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/biomaj3-download-3.2.12/debian/python3-biomaj3-download/usr/lib/python3.13/dist-packages/biomaj_download/biomaj_download_web.py to biomaj_download_web.cpython-313.pyc byte-compiling /build/reproducible-path/biomaj3-download-3.2.12/debian/python3-biomaj3-download/usr/lib/python3.13/dist-packages/biomaj_download/downloadclient.py to downloadclient.cpython-313.pyc byte-compiling /build/reproducible-path/biomaj3-download-3.2.12/debian/python3-biomaj3-download/usr/lib/python3.13/dist-packages/biomaj_download/downloadservice.py to downloadservice.cpython-313.pyc byte-compiling /build/reproducible-path/biomaj3-download-3.2.12/debian/python3-biomaj3-download/usr/lib/python3.13/dist-packages/biomaj_download/wsgi.py to wsgi.cpython-313.pyc running install_egg_info Copying biomaj_download.egg-info to /build/reproducible-path/biomaj3-download-3.2.12/debian/python3-biomaj3-download/usr/lib/python3.13/dist-packages/biomaj_download-3.2.12.egg-info Skipping SOURCES.txt running install_scripts copying build/scripts-3.13/biomaj_download_consumer.py -> /build/reproducible-path/biomaj3-download-3.2.12/debian/python3-biomaj3-download/usr/bin changing mode of /build/reproducible-path/biomaj3-download-3.2.12/debian/python3-biomaj3-download/usr/bin/biomaj_download_consumer.py to 755 debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/biomaj3-download-3.2.12' dh_install sed -i '1s;^;#!/usr/bin/python3\n;' debian/python3-biomaj3-download/usr/bin/biomaj_download_consumer.py make[1]: Leaving directory '/build/reproducible-path/biomaj3-download-3.2.12' dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild I: dh_python3 tools:114: replacing shebang in debian/python3-biomaj3-download/usr/bin/biomaj_download_consumer.py I: dh_python3 pydist:316: Cannot find package that provides python_consul. Please add package that provides it to Build-Depends or add "python_consul python3-consul" line to debian/py3dist-overrides or add proper dependency to Depends by hand and ignore this info. dh_installsystemduser -O--buildsystem=pybuild dh_lintian -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-biomaj3-download' in '../python3-biomaj3-download_3.2.12-2_all.deb'. dpkg-genbuildinfo --build=binary -O../biomaj3-download_3.2.12-2_arm64.buildinfo dpkg-genchanges --build=binary -O../biomaj3-download_3.2.12-2_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/698221 and its subdirectories I: Current time: Thu Jul 31 13:33:26 -12 2025 I: pbuilder-time-stamp: 1754012006 Fri Aug 1 01:33:29 UTC 2025 I: 1st build successful. Starting 2nd build on remote node codethink03-arm64.debian.net. Fri Aug 1 01:33:29 UTC 2025 I: Preparing to do remote build '2' on codethink03-arm64.debian.net. Fri Aug 1 01:33:29 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink03-arm64.debian.net is marked as down. Fri Aug 1 01:33:29 UTC 2025 - checking via ssh if codethink03-arm64.debian.net is up. removed '/tmp/read-only-fs-test-lu0wlX' ==================================================================================== Thu Sep 3 07:56:30 UTC 2026 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on codethink03-arm64, called using "2 biomaj3-download unstable /srv/reproducible-results/rbuild-debian/r-b-build.UPWU1Oy1 3.2.12-2" as arguments. Thu Sep 3 07:56:30 UTC 2026 - actually running "reproducible_build.sh" (md5sum 44ec6a3142940d5e9a7ab76543d96029) as "/tmp/jenkins-script-JUMi49dS" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Thu Sep 3 07:56:30 UTC 2026 I: Downloading source for unstable/biomaj3-download=3.2.12-2 Reading package lists... NOTICE: 'biomaj3-download' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/biomaj3-download.git Please use: git clone https://salsa.debian.org/med-team/biomaj3-download.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 68.8 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main biomaj3-download 3.2.12-2 (dsc) [2541 B] Get:2 http://deb.debian.org/debian unstable/main biomaj3-download 3.2.12-2 (tar) [51.8 kB] Get:3 http://deb.debian.org/debian unstable/main biomaj3-download 3.2.12-2 (diff) [14.5 kB] Fetched 68.8 kB in 0s (6190 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'biomaj3-download' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/biomaj3-download.git Please use: git clone https://salsa.debian.org/med-team/biomaj3-download.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 68.8 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main biomaj3-download 3.2.12-2 (dsc) [2541 B] Get:2 http://deb.debian.org/debian unstable/main biomaj3-download 3.2.12-2 (tar) [51.8 kB] Get:3 http://deb.debian.org/debian unstable/main biomaj3-download 3.2.12-2 (diff) [14.5 kB] Fetched 68.8 kB in 0s (6190 kB/s) Download complete and in download only mode ============================================================================= Re-Building biomaj3-download in unstable on arm64 on codethink03-arm64 now. Date: Thu Sep 3 08:56:30 BST 2026 Date UTC: Thu Sep 3 07:56:30 UTC 2026 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.UPWU1Oy1 + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.UPWU1Oy1/pbuilderrc_PTsu + case ${ARCH} in + case $ARCH in + locale=nl_BE + language=nl + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' biomaj3-download = debian-installer -o biomaj3-download = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' biomaj3-download = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.UPWU1Oy1/pbuilderrc_PTsu --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.UPWU1Oy1/b2 --logfile b2/build.log biomaj3-download_3.2.12-2.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Thu Sep 3 21:56:30 +14 2026 I: pbuilder-time-stamp: 1788422190 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [biomaj3-download_3.2.12-2.dsc] I: copying [./biomaj3-download_3.2.12.orig.tar.xz] I: copying [./biomaj3-download_3.2.12-2.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./biomaj3-download_3.2.12-2.dsc: no acceptable signature found dpkg-source: info: extracting biomaj3-download in biomaj3-download-3.2.12 dpkg-source: info: unpacking biomaj3-download_3.2.12.orig.tar.xz dpkg-source: info: unpacking biomaj3-download_3.2.12-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying locale-sensitive.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/985276/tmp/hooks/D01_modify_environment starting debug: Running on codethink03-arm64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Sep 3 07:56 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/985276/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/985276/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") BASH_VERSION='5.2.37(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=arm64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DIRSTACK=() DISTRIBUTION=unstable EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=aarch64 HOST_ARCH=arm64 IFS=' ' INVOCATION_ID=8639e8ca3c1a478eb7c3a930500b3814 LANG=C LANGUAGE=nl_BE:nl LC_ALL=C MACHTYPE=aarch64-unknown-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=985276 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.UPWU1Oy1/pbuilderrc_PTsu --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.UPWU1Oy1/b2 --logfile b2/build.log biomaj3-download_3.2.12-2.dsc' SUDO_GID=109 SUDO_UID=104 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://192.168.101.4:3128 I: uname -a Linux i-capture-the-hostname 6.1.0-37-cloud-arm64 #1 SMP Debian 6.1.140-1 (2025-05-22) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 12 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/985276/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, protobuf-compiler, python3-all, python3-bcrypt, python3-consul, python3-flask, python3-humanfriendly, python3-irodsclient, python3-pytest, python3-pika, python3-prometheus-client, python3-protobuf, python3-pycurl, python3-pymongo, python3-redis, python3-requests, python3-setuptools, python3-yaml, python3-biomaj3-core, python3-biomaj3-zipkin, python3-ftputil, python3-tenacity, python3-simpleeval, rsync dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19964 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on protobuf-compiler; however: Package protobuf-compiler is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-bcrypt; however: Package python3-bcrypt is not installed. pbuilder-satisfydepends-dummy depends on python3-consul; however: Package python3-consul is not installed. pbuilder-satisfydepends-dummy depends on python3-flask; however: Package python3-flask is not installed. pbuilder-satisfydepends-dummy depends on python3-humanfriendly; however: Package python3-humanfriendly is not installed. pbuilder-satisfydepends-dummy depends on python3-irodsclient; however: Package python3-irodsclient is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-pika; however: Package python3-pika is not installed. pbuilder-satisfydepends-dummy depends on python3-prometheus-client; however: Package python3-prometheus-client is not installed. pbuilder-satisfydepends-dummy depends on python3-protobuf; however: Package python3-protobuf is not installed. pbuilder-satisfydepends-dummy depends on python3-pycurl; however: Package python3-pycurl is not installed. pbuilder-satisfydepends-dummy depends on python3-pymongo; however: Package python3-pymongo is not installed. pbuilder-satisfydepends-dummy depends on python3-redis; however: Package python3-redis is not installed. pbuilder-satisfydepends-dummy depends on python3-requests; however: Package python3-requests is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-yaml; however: Package python3-yaml is not installed. pbuilder-satisfydepends-dummy depends on python3-biomaj3-core; however: Package python3-biomaj3-core is not installed. pbuilder-satisfydepends-dummy depends on python3-biomaj3-zipkin; however: Package python3-biomaj3-zipkin is not installed. pbuilder-satisfydepends-dummy depends on python3-ftputil; however: Package python3-ftputil is not installed. pbuilder-satisfydepends-dummy depends on python3-tenacity; however: Package python3-tenacity is not installed. pbuilder-satisfydepends-dummy depends on python3-simpleeval; however: Package python3-simpleeval is not installed. pbuilder-satisfydepends-dummy depends on rsync; however: Package rsync is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbrotli1{a} libcom-err2{a} libcurl3t64-gnutls{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgnutls30t64{a} libgssapi-krb5-2{a} libidn2-0{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap2{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libp11-kit0{a} libpipeline1{a} libpopt0{a} libprotobuf32t64{a} libprotoc32t64{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libtasn1-6{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} libyaml-0-2{a} m4{a} man-db{a} media-types{a} netbase{a} openssl{a} po-debconf{a} protobuf-compiler{a} python3{a} python3-all{a} python3-autocommand{a} python3-bcrypt{a} python3-biomaj3-core{a} python3-biomaj3-zipkin{a} python3-blinker{a} python3-bson{a} python3-certifi{a} python3-chardet{a} python3-charset-normalizer{a} python3-click{a} python3-consul{a} python3-decorator{a} python3-defusedxml{a} python3-dnspython{a} python3-elastic-transport{a} python3-elasticsearch{a} python3-flask{a} python3-ftputil{a} python3-humanfriendly{a} python3-idna{a} python3-inflect{a} python3-iniconfig{a} python3-irodsclient{a} python3-itsdangerous{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-jinja2{a} python3-markupsafe{a} python3-minimal{a} python3-more-itertools{a} python3-packaging{a} python3-pika{a} python3-pkg-resources{a} python3-pluggy{a} python3-prettytable{a} python3-prometheus-client{a} python3-protobuf{a} python3-py-zipkin{a} python3-pycurl{a} python3-pymongo{a} python3-pytest{a} python3-redis{a} python3-requests{a} python3-setuptools{a} python3-simpleeval{a} python3-tenacity{a} python3-typeguard{a} python3-typing-extensions{a} python3-urllib3{a} python3-wcwidth{a} python3-werkzeug{a} python3-yaml{a} python3-zipp{a} python3.13{a} python3.13-minimal{a} readline-common{a} rsync{a} sensible-utils{a} tzdata{a} The following packages are RECOMMENDED but will NOT be installed: curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libprotobuf-dev libsasl2-modules lynx publicsuffix python3-asgiref python3-babel python3-bson-ext python3-cryptography python3-dotenv python3-gridfs python3-h2 python3-httpcore python3-httpx python3-openssl python3-pygments python3-pyinotify python3-pymongo-ext wget 0 packages upgraded, 128 newly installed, 0 to remove and 0 not upgraded. Need to get 30.3 MB of archives. After unpacking 127 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main arm64 libexpat1 arm64 2.7.1-2 [93.3 kB] Get: 2 http://deb.debian.org/debian unstable/main arm64 libpython3.13-minimal arm64 3.13.5-2 [856 kB] Get: 3 http://deb.debian.org/debian unstable/main arm64 python3.13-minimal arm64 3.13.5-2 [2003 kB] Get: 4 http://deb.debian.org/debian unstable/main arm64 python3-minimal arm64 3.13.5-1 [27.2 kB] Get: 5 http://deb.debian.org/debian unstable/main arm64 media-types all 13.0.0 [29.3 kB] Get: 6 http://deb.debian.org/debian unstable/main arm64 netbase all 6.5 [12.4 kB] Get: 7 http://deb.debian.org/debian unstable/main arm64 tzdata all 2025b-4 [260 kB] Get: 8 http://deb.debian.org/debian unstable/main arm64 libffi8 arm64 3.4.8-2 [21.3 kB] Get: 9 http://deb.debian.org/debian unstable/main arm64 readline-common all 8.2-6 [69.4 kB] Get: 10 http://deb.debian.org/debian unstable/main arm64 libreadline8t64 arm64 8.2-6 [159 kB] Get: 11 http://deb.debian.org/debian unstable/main arm64 libpython3.13-stdlib arm64 3.13.5-2 [1892 kB] Get: 12 http://deb.debian.org/debian unstable/main arm64 python3.13 arm64 3.13.5-2 [757 kB] Get: 13 http://deb.debian.org/debian unstable/main arm64 libpython3-stdlib arm64 3.13.5-1 [10.2 kB] Get: 14 http://deb.debian.org/debian unstable/main arm64 python3 arm64 3.13.5-1 [28.2 kB] Get: 15 http://deb.debian.org/debian unstable/main arm64 libpopt0 arm64 1.19+dfsg-2 [42.8 kB] Get: 16 http://deb.debian.org/debian unstable/main arm64 rsync arm64 3.4.1+ds1-5 [409 kB] Get: 17 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.25 [25.0 kB] Get: 18 http://deb.debian.org/debian unstable/main arm64 openssl arm64 3.5.1-1 [1457 kB] Get: 19 http://deb.debian.org/debian unstable/main arm64 ca-certificates all 20250419 [162 kB] Get: 20 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.46-5 [338 kB] Get: 21 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.46-5 [103 kB] Get: 22 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.46-5 [43.7 kB] Get: 23 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.23.1-2 [241 kB] Get: 24 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 25 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-9 [1130 kB] Get: 26 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.41-5 [93.8 kB] Get: 27 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 28 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.1-1 [1453 kB] Get: 29 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.19-8 [285 kB] Get: 30 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3.1 [494 kB] Get: 31 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20240727.1 [60.2 kB] Get: 32 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.17-4 [862 kB] Get: 33 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.23.1-2 [770 kB] Get: 34 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.24.2 [90.9 kB] Get: 35 http://deb.debian.org/debian unstable/main arm64 libtool all 2.5.4-4 [539 kB] Get: 36 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 37 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 38 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 39 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 40 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 41 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 42 http://deb.debian.org/debian unstable/main arm64 libunistring5 arm64 1.3-2 [453 kB] Get: 43 http://deb.debian.org/debian unstable/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-2.1 [630 kB] Get: 44 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.23.1-2 [1611 kB] Get: 45 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 46 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 47 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.24.2 [919 kB] Get: 48 http://deb.debian.org/debian unstable/main arm64 dh-python all 6.20250414 [116 kB] Get: 49 http://deb.debian.org/debian unstable/main arm64 libbrotli1 arm64 1.1.0-2+b7 [308 kB] Get: 50 http://deb.debian.org/debian unstable/main arm64 libcom-err2 arm64 1.47.2-3+b3 [24.9 kB] Get: 51 http://deb.debian.org/debian unstable/main arm64 libidn2-0 arm64 2.3.8-2 [107 kB] Get: 52 http://deb.debian.org/debian unstable/main arm64 libp11-kit0 arm64 0.25.5-3 [409 kB] Get: 53 http://deb.debian.org/debian unstable/main arm64 libtasn1-6 arm64 4.20.0-2 [47.3 kB] Get: 54 http://deb.debian.org/debian unstable/main arm64 libgnutls30t64 arm64 3.8.9-3 [1375 kB] Get: 55 http://deb.debian.org/debian unstable/main arm64 libkrb5support0 arm64 1.21.3-5 [32.4 kB] Get: 56 http://deb.debian.org/debian unstable/main arm64 libk5crypto3 arm64 1.21.3-5 [81.2 kB] Get: 57 http://deb.debian.org/debian unstable/main arm64 libkeyutils1 arm64 1.6.3-6 [9716 B] Get: 58 http://deb.debian.org/debian unstable/main arm64 libkrb5-3 arm64 1.21.3-5 [308 kB] Get: 59 http://deb.debian.org/debian unstable/main arm64 libgssapi-krb5-2 arm64 1.21.3-5 [127 kB] Get: 60 http://deb.debian.org/debian unstable/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-9 [20.1 kB] Get: 61 http://deb.debian.org/debian unstable/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-9 [55.6 kB] Get: 62 http://deb.debian.org/debian unstable/main arm64 libldap2 arm64 2.6.10+dfsg-1 [179 kB] Get: 63 http://deb.debian.org/debian unstable/main arm64 libnghttp2-14 arm64 1.64.0-1.1 [71.4 kB] Get: 64 http://deb.debian.org/debian unstable/main arm64 libnghttp3-9 arm64 1.8.0-1 [63.2 kB] Get: 65 http://deb.debian.org/debian unstable/main arm64 libngtcp2-16 arm64 1.11.0-1 [121 kB] Get: 66 http://deb.debian.org/debian unstable/main arm64 libngtcp2-crypto-gnutls8 arm64 1.11.0-1 [28.2 kB] Get: 67 http://deb.debian.org/debian unstable/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB] Get: 68 http://deb.debian.org/debian unstable/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b5 [56.8 kB] Get: 69 http://deb.debian.org/debian unstable/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Get: 70 http://deb.debian.org/debian unstable/main arm64 libcurl3t64-gnutls arm64 8.14.1-2 [353 kB] Get: 71 http://deb.debian.org/debian unstable/main arm64 libprotobuf32t64 arm64 3.21.12-11 [858 kB] Get: 72 http://deb.debian.org/debian unstable/main arm64 libprotoc32t64 arm64 3.21.12-11 [790 kB] Get: 73 http://deb.debian.org/debian unstable/main arm64 libyaml-0-2 arm64 0.2.5-2 [49.2 kB] Get: 74 http://deb.debian.org/debian unstable/main arm64 protobuf-compiler arm64 3.21.12-11 [84.7 kB] Get: 75 http://deb.debian.org/debian unstable/main arm64 python3-all arm64 3.13.5-1 [1044 B] Get: 76 http://deb.debian.org/debian unstable/main arm64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 77 http://deb.debian.org/debian unstable/main arm64 python3-bcrypt arm64 4.2.0-2.1+b1 [188 kB] Get: 78 http://deb.debian.org/debian unstable/main arm64 python3-more-itertools all 10.7.0-1 [67.4 kB] Get: 79 http://deb.debian.org/debian unstable/main arm64 python3-typing-extensions all 4.13.2-1 [90.5 kB] Get: 80 http://deb.debian.org/debian unstable/main arm64 python3-typeguard all 4.4.2-1 [37.3 kB] Get: 81 http://deb.debian.org/debian unstable/main arm64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 82 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 83 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 84 http://deb.debian.org/debian unstable/main arm64 python3-zipp all 3.21.0-1 [10.6 kB] Get: 85 http://deb.debian.org/debian unstable/main arm64 python3-setuptools all 78.1.1-0.1 [738 kB] Get: 86 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.context all 6.0.1-1 [8276 B] Get: 87 http://deb.debian.org/debian unstable/main arm64 python3-pkg-resources all 78.1.1-0.1 [224 kB] Get: 88 http://deb.debian.org/debian unstable/main arm64 python3-certifi all 2025.1.31+ds-1 [9652 B] Get: 89 http://deb.debian.org/debian unstable/main arm64 python3-urllib3 all 2.3.0-3 [115 kB] Get: 90 http://deb.debian.org/debian unstable/main arm64 python3-elastic-transport all 8.17.1-2 [37.0 kB] Get: 91 http://deb.debian.org/debian unstable/main arm64 python3-elasticsearch all 8.17.2-2 [223 kB] Get: 92 http://deb.debian.org/debian unstable/main arm64 python3-charset-normalizer arm64 3.4.2-1 [120 kB] Get: 93 http://deb.debian.org/debian unstable/main arm64 python3-idna all 3.10-1 [42.0 kB] Get: 94 http://deb.debian.org/debian unstable/main arm64 python3-chardet all 5.2.0+dfsg-2 [108 kB] Get: 95 http://deb.debian.org/debian unstable/main arm64 python3-requests all 2.32.3+dfsg-5 [72.2 kB] Get: 96 http://deb.debian.org/debian unstable/main arm64 python3-biomaj3-core all 3.0.28-4 [25.1 kB] Get: 97 http://deb.debian.org/debian unstable/main arm64 python3-py-zipkin all 1.2.8-2 [36.4 kB] Get: 98 http://deb.debian.org/debian unstable/main arm64 python3-biomaj3-zipkin all 0.2.2-3 [15.1 kB] Get: 99 http://deb.debian.org/debian unstable/main arm64 python3-blinker all 1.9.0-1 [12.6 kB] Get: 100 http://deb.debian.org/debian unstable/main arm64 python3-bson all 4.10.1-6 [87.2 kB] Get: 101 http://deb.debian.org/debian unstable/main arm64 python3-click all 8.2.0+0.really.8.1.8-1 [95.4 kB] Get: 102 http://deb.debian.org/debian unstable/main arm64 python3-consul all 1.5.5-1 [23.9 kB] Get: 103 http://deb.debian.org/debian unstable/main arm64 python3-decorator all 5.2.1-2 [33.0 kB] Get: 104 http://deb.debian.org/debian unstable/main arm64 python3-defusedxml all 0.7.1-3 [43.4 kB] Get: 105 http://deb.debian.org/debian unstable/main arm64 python3-dnspython all 2.7.0-1 [164 kB] Get: 106 http://deb.debian.org/debian unstable/main arm64 python3-itsdangerous all 2.2.0-2 [18.1 kB] Get: 107 http://deb.debian.org/debian unstable/main arm64 python3-markupsafe arm64 2.1.5-1+b4 [14.1 kB] Get: 108 http://deb.debian.org/debian unstable/main arm64 python3-jinja2 all 3.1.6-1 [107 kB] Get: 109 http://deb.debian.org/debian unstable/main arm64 python3-werkzeug all 3.1.3-2 [207 kB] Get: 110 http://deb.debian.org/debian unstable/main arm64 python3-flask all 3.1.1-1 [107 kB] Get: 111 http://deb.debian.org/debian unstable/main arm64 python3-ftputil all 5.1.0-1 [40.4 kB] Get: 112 http://deb.debian.org/debian unstable/main arm64 python3-humanfriendly all 10.0-6 [85.6 kB] Get: 113 http://deb.debian.org/debian unstable/main arm64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 114 http://deb.debian.org/debian unstable/main arm64 python3-wcwidth all 0.2.13+dfsg1-1 [24.9 kB] Get: 115 http://deb.debian.org/debian unstable/main arm64 python3-prettytable all 3.15.1-1 [41.8 kB] Get: 116 http://deb.debian.org/debian unstable/main arm64 python3-irodsclient all 3.0.0-1 [213 kB] Get: 117 http://deb.debian.org/debian unstable/main arm64 python3-packaging all 25.0-1 [56.6 kB] Get: 118 http://deb.debian.org/debian unstable/main arm64 python3-pika all 1.3.2-1 [125 kB] Get: 119 http://deb.debian.org/debian unstable/main arm64 python3-pluggy all 1.5.0-1 [26.9 kB] Get: 120 http://deb.debian.org/debian unstable/main arm64 python3-prometheus-client all 0.21.1+ds1-1 [44.9 kB] Get: 121 http://deb.debian.org/debian unstable/main arm64 python3-protobuf arm64 3.21.12-11 [242 kB] Get: 122 http://deb.debian.org/debian unstable/main arm64 python3-pycurl arm64 7.45.6-1 [69.4 kB] Get: 123 http://deb.debian.org/debian unstable/main arm64 python3-pymongo all 4.10.1-6 [272 kB] Get: 124 http://deb.debian.org/debian unstable/main arm64 python3-pytest all 8.3.5-2 [250 kB] Get: 125 http://deb.debian.org/debian unstable/main arm64 python3-redis all 6.1.0-2 [249 kB] Get: 126 http://deb.debian.org/debian unstable/main arm64 python3-simpleeval all 1.0.3-1 [24.0 kB] Get: 127 http://deb.debian.org/debian unstable/main arm64 python3-tenacity all 8.4.2+really8.4.1-2 [46.0 kB] Get: 128 http://deb.debian.org/debian unstable/main arm64 python3-yaml arm64 6.0.2-1+b2 [122 kB] Fetched 30.3 MB in 0s (94.6 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19964 files and directories currently installed.) Preparing to unpack .../libexpat1_2.7.1-2_arm64.deb ... Unpacking libexpat1:arm64 (2.7.1-2) ... Selecting previously unselected package libpython3.13-minimal:arm64. Preparing to unpack .../libpython3.13-minimal_3.13.5-2_arm64.deb ... Unpacking libpython3.13-minimal:arm64 (3.13.5-2) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../python3.13-minimal_3.13.5-2_arm64.deb ... Unpacking python3.13-minimal (3.13.5-2) ... Setting up libpython3.13-minimal:arm64 (3.13.5-2) ... Setting up libexpat1:arm64 (2.7.1-2) ... Setting up python3.13-minimal (3.13.5-2) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20298 files and directories currently installed.) 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Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.2-6) ... Selecting previously unselected package libpython3.13-stdlib:arm64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.5-2_arm64.deb ... Unpacking libpython3.13-stdlib:arm64 (3.13.5-2) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.5-2_arm64.deb ... Unpacking python3.13 (3.13.5-2) ... 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Setting up python3-click (8.2.0+0.really.8.1.8-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up python3-markupsafe (2.1.5-1+b4) ... Setting up python3-simpleeval (1.0.3-1) ... Setting up python3-bson (4.10.1-6) ... Setting up python3-decorator (5.2.1-2) ... Setting up python3-jinja2 (3.1.6-1) ... Setting up python3-packaging (25.0-1) ... Setting up python3-chardet (5.2.0+dfsg-2) ... Setting up python3-wcwidth (0.2.13+dfsg1-1) ... Setting up python3-humanfriendly (10.0-6) ... Setting up python3-certifi (2025.1.31+ds-1) ... Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up python3-werkzeug (3.1.3-2) ... Setting up python3-idna (3.10-1) ... Setting up python3-typing-extensions (4.13.2-1) ... Setting up python3-redis (6.1.0-2) ... Setting up python3-urllib3 (2.3.0-3) ... Setting up python3-pluggy (1.5.0-1) ... Setting up python3-dnspython (2.7.0-1) ... Setting up python3-py-zipkin (1.2.8-2) ... Setting up python3-protobuf (3.21.12-11) ... Setting up python3-pymongo (4.10.1-6) ... Setting up python3-prettytable (3.15.1-1) ... Setting up libngtcp2-crypto-gnutls8:arm64 (1.11.0-1) ... Setting up python3-blinker (1.9.0-1) ... Setting up dh-python (6.20250414) ... Setting up python3-more-itertools (10.7.0-1) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up python3-elastic-transport (8.17.1-2) ... Setting up python3-ftputil (5.1.0-1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.1-1) ... Setting up python3-defusedxml (0.7.1-3) ... Setting up python3-charset-normalizer (3.4.2-1) ... Setting up python3-pika (1.3.2-1) ... Setting up python3-pytest (8.3.5-2) ... Setting up python3-tenacity (8.4.2+really8.4.1-2) ... Setting up python3-bcrypt (4.2.0-2.1+b1) ... Setting up python3-typeguard (4.4.2-1) ... Setting up libcurl3t64-gnutls:arm64 (8.14.1-2) ... Setting up python3-itsdangerous (2.2.0-2) ... Setting up python3-all (3.13.5-1) ... Setting up python3-yaml (6.0.2-1+b2) ... Setting up debhelper (13.24.2) ... Setting up python3-inflect (7.3.1-2) ... Setting up python3-prometheus-client (0.21.1+ds1-1) ... Setting up python3-pycurl (7.45.6-1) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-requests (2.32.3+dfsg-5) ... Setting up python3-consul (1.5.5-1) ... Setting up python3-irodsclient (3.0.0-1) ... /usr/lib/python3/dist-packages/irods/test/admin_test.py:379: SyntaxWarning: invalid escape sequence '\]' new_password = """abc123!"#$%&'()*+,-./:;<=>?@[\]^_`{|}~Z""" /usr/lib/python3/dist-packages/irods/test/admin_test.py:406: SyntaxWarning: invalid escape sequence '\]' new_comment = """comment-abc123!"#$%&'()*+,-./:;<=>?@[\]^_{|}~Z""" # omitting backtick due to #170 /usr/lib/python3/dist-packages/irods/test/admin_test.py:425: SyntaxWarning: invalid escape sequence '\]' new_info = """info-abc123!"#$%&'()*+,-./:;<=>?@[\]^_{|}~Z""" # omitting backtick due to #170 /usr/lib/python3/dist-packages/irods/test/data_obj_test.py:37: SyntaxWarning: invalid escape sequence '\.' localhost_with_optional_domain_pattern = re.compile("localhost(\.\S\S*)?$") /usr/lib/python3/dist-packages/irods/test/data_obj_test.py:420: SyntaxWarning: invalid escape sequence '\s' NumThreadsRegex = re.compile("^num_threads\s*=\s*(\d+)", re.MULTILINE) /usr/lib/python3/dist-packages/irods/test/data_obj_test.py:604: SyntaxWarning: invalid escape sequence '\s' "No\s+Checksum\s+Available.+\s+Replica\s\[(\d+)\]", re.IGNORECASE /usr/lib/python3/dist-packages/irods/test/data_obj_test.py:1049: SyntaxWarning: invalid escape sequence '\S' re.finditer("redirect_to_host = (\S+)", search_text), /usr/lib/python3/dist-packages/irods/test/data_obj_test.py:1050: SyntaxWarning: invalid escape sequence '\S' re.finditer("target_host = (\S+)", search_text), /usr/lib/python3/dist-packages/irods/test/rule_test.py:423: SyntaxWarning: invalid escape sequence '\[' self.assertRegexpMatches(lines[0], ".*\[Hello world!\]") /usr/lib/python3/dist-packages/irods/test/rule_test.py:445: SyntaxWarning: invalid escape sequence '\[' self.assertRegexpMatches(lines[0], "\[STRING\]\[\]") /usr/lib/python3/dist-packages/irods/test/rule_test.py:446: SyntaxWarning: invalid escape sequence '\[' self.assertRegexpMatches(lines[1], "\[STRING\]\[\]") /usr/lib/python3/dist-packages/irods/test/rule_test.py:455: SyntaxWarning: invalid escape sequence '\[' self.assertRegexpMatches(lines[0], "\[INTEGER\]\[5\]") /usr/lib/python3/dist-packages/irods/test/rule_test.py:456: SyntaxWarning: invalid escape sequence '\[' self.assertRegexpMatches(lines[1], "\[STRING\]\[A String\]") Setting up python3-pkg-resources (78.1.1-0.1) ... Setting up python3-elasticsearch (8.17.2-2) ... Setting up python3-setuptools (78.1.1-0.1) ... Setting up python3-biomaj3-zipkin (0.2.2-3) ... Setting up python3-flask (3.1.1-1) ... Setting up python3-biomaj3-core (3.0.28-4) ... Processing triggers for libc-bin (2.41-11) ... Processing triggers for ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/985276/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for unstable I: user script /srv/workspace/pbuilder/985276/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/biomaj3-download-3.2.12/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../biomaj3-download_3.2.12-2_source.changes dpkg-buildpackage: info: source package biomaj3-download dpkg-buildpackage: info: source version 3.2.12-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py clean /usr/lib/python3/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self._enforce_underscore(opt, section) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. (Affected: biomaj_download). This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self._enforce_underscore(opt, section) /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU Affero General Public License v3 or later (AGPLv3+) See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running clean removing '/build/reproducible-path/biomaj3-download-3.2.12/.pybuild/cpython3_3.13_biomaj-download/build' (and everything under it) 'build/bdist.linux-aarch64' does not exist -- can't clean it 'build/scripts-3.13' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild debian/rules override_dh_clean make[1]: Entering directory '/build/reproducible-path/biomaj3-download-3.2.12' dh_clean rm -rf biomaj_download.egg-info if [ -e biomaj_download/message/downmessage_pb2.py.bak ] ; then mv biomaj_download/message/downmessage_pb2.py.bak biomaj_download/message/downmessage_pb2.py; fi make[1]: Leaving directory '/build/reproducible-path/biomaj3-download-3.2.12' debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/biomaj3-download-3.2.12' cp -a biomaj_download/message/downmessage_pb2.py biomaj_download/message/downmessage_pb2.py.bak dh_auto_configure I: pybuild base:311: python3.13 setup.py config /usr/lib/python3/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self._enforce_underscore(opt, section) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. (Affected: biomaj_download). This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self._enforce_underscore(opt, section) /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU Affero General Public License v3 or later (AGPLv3+) See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running config make[1]: Leaving directory '/build/reproducible-path/biomaj3-download-3.2.12' debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/biomaj3-download-3.2.12' cd biomaj_download/message && protoc --python_out=. downmessage.proto dh_auto_build I: pybuild base:311: /usr/bin/python3 setup.py build /usr/lib/python3/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self._enforce_underscore(opt, section) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. (Affected: biomaj_download). This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self._enforce_underscore(opt, section) /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU Affero General Public License v3 or later (AGPLv3+) See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running build running build_py creating /build/reproducible-path/biomaj3-download-3.2.12/.pybuild/cpython3_3.13_biomaj-download/build/biomaj_download copying biomaj_download/wsgi.py -> /build/reproducible-path/biomaj3-download-3.2.12/.pybuild/cpython3_3.13_biomaj-download/build/biomaj_download copying biomaj_download/downloadservice.py -> /build/reproducible-path/biomaj3-download-3.2.12/.pybuild/cpython3_3.13_biomaj-download/build/biomaj_download copying biomaj_download/downloadclient.py -> /build/reproducible-path/biomaj3-download-3.2.12/.pybuild/cpython3_3.13_biomaj-download/build/biomaj_download copying biomaj_download/biomaj_download_web.py -> /build/reproducible-path/biomaj3-download-3.2.12/.pybuild/cpython3_3.13_biomaj-download/build/biomaj_download copying biomaj_download/__init__.py -> /build/reproducible-path/biomaj3-download-3.2.12/.pybuild/cpython3_3.13_biomaj-download/build/biomaj_download creating /build/reproducible-path/biomaj3-download-3.2.12/.pybuild/cpython3_3.13_biomaj-download/build/biomaj_download/message copying biomaj_download/message/downmessage_pb2.py -> /build/reproducible-path/biomaj3-download-3.2.12/.pybuild/cpython3_3.13_biomaj-download/build/biomaj_download/message copying biomaj_download/message/__init__.py -> /build/reproducible-path/biomaj3-download-3.2.12/.pybuild/cpython3_3.13_biomaj-download/build/biomaj_download/message creating /build/reproducible-path/biomaj3-download-3.2.12/.pybuild/cpython3_3.13_biomaj-download/build/biomaj_download/download copying biomaj_download/download/rsync.py -> /build/reproducible-path/biomaj3-download-3.2.12/.pybuild/cpython3_3.13_biomaj-download/build/biomaj_download/download copying biomaj_download/download/protocolirods.py -> /build/reproducible-path/biomaj3-download-3.2.12/.pybuild/cpython3_3.13_biomaj-download/build/biomaj_download/download copying biomaj_download/download/localcopy.py -> /build/reproducible-path/biomaj3-download-3.2.12/.pybuild/cpython3_3.13_biomaj-download/build/biomaj_download/download copying biomaj_download/download/interface.py -> /build/reproducible-path/biomaj3-download-3.2.12/.pybuild/cpython3_3.13_biomaj-download/build/biomaj_download/download copying biomaj_download/download/downloadthreads.py -> /build/reproducible-path/biomaj3-download-3.2.12/.pybuild/cpython3_3.13_biomaj-download/build/biomaj_download/download copying biomaj_download/download/direct.py -> /build/reproducible-path/biomaj3-download-3.2.12/.pybuild/cpython3_3.13_biomaj-download/build/biomaj_download/download copying biomaj_download/download/curl.py -> /build/reproducible-path/biomaj3-download-3.2.12/.pybuild/cpython3_3.13_biomaj-download/build/biomaj_download/download copying biomaj_download/download/__init__.py -> /build/reproducible-path/biomaj3-download-3.2.12/.pybuild/cpython3_3.13_biomaj-download/build/biomaj_download/download running egg_info creating biomaj_download.egg-info writing biomaj_download.egg-info/PKG-INFO writing dependency_links to biomaj_download.egg-info/dependency_links.txt writing requirements to biomaj_download.egg-info/requires.txt writing top-level names to biomaj_download.egg-info/top_level.txt writing manifest file 'biomaj_download.egg-info/SOURCES.txt' reading manifest file 'biomaj_download.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.txt' under directory 'biomaj_core' adding license file 'LICENSE' writing manifest file 'biomaj_download.egg-info/SOURCES.txt' running build_scripts creating build/scripts-3.13 copying and adjusting bin/biomaj_download_consumer.py -> build/scripts-3.13 changing mode of build/scripts-3.13/biomaj_download_consumer.py from 644 to 755 make[1]: Leaving directory '/build/reproducible-path/biomaj3-download-3.2.12' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/biomaj3-download-3.2.12' LOCAL_IRODS=0 NETWORK=0 python3 -m pytest -v tests/biomaj_tests.py ============================= test session starts ============================== platform linux -- Python 3.13.5, pytest-8.3.5, pluggy-1.5.0 -- /usr/bin/python3 cachedir: .pytest_cache rootdir: /build/reproducible-path/biomaj3-download-3.2.12 plugins: typeguard-4.4.2 collecting ... collected 61 items tests/biomaj_tests.py::TestDownloadInterface::test_retry_parsing PASSED [ 1%] tests/biomaj_tests.py::TestBiomajLocalDownload::test_local_list PASSED [ 3%] tests/biomaj_tests.py::TestBiomajLocalDownload::test_local_list_error PASSED [ 4%] tests/biomaj_tests.py::TestBiomajLocalDownload::test_local_download PASSED [ 6%] tests/biomaj_tests.py::TestBiomajLocalDownload::test_local_download_in_subdir PASSED [ 8%] tests/biomaj_tests.py::TestBiomajLocalDownload::test_local_download_hardlinks PASSED [ 9%] tests/biomaj_tests.py::TestBiomajHTTPDownload::test_http_list SKIPPED [ 11%] tests/biomaj_tests.py::TestBiomajHTTPDownload::test_http_list_error SKIPPED [ 13%] tests/biomaj_tests.py::TestBiomajHTTPDownload::test_http_list_dateregexp SKIPPED [ 14%] tests/biomaj_tests.py::TestBiomajHTTPDownload::test_http_download_no_size SKIPPED [ 16%] tests/biomaj_tests.py::TestBiomajHTTPDownload::test_http_download_no_date SKIPPED [ 18%] tests/biomaj_tests.py::TestBiomajHTTPDownload::test_http_download SKIPPED [ 19%] tests/biomaj_tests.py::TestBiomajHTTPDownload::test_http_download_in_subdir SKIPPED [ 21%] tests/biomaj_tests.py::TestBiomajHTTPDownload::test_redirection SKIPPED [ 22%] tests/biomaj_tests.py::TestBiomajHTTPSDownload::test_download SKIPPED [ 24%] tests/biomaj_tests.py::TestBiomajSFTPDownload::test_list_error SKIPPED [ 26%] tests/biomaj_tests.py::TestBiomajSFTPDownload::test_download SKIPPED [ 27%] tests/biomaj_tests.py::TestBiomajDirectFTPDownload::test_ftp_list SKIPPED [ 29%] tests/biomaj_tests.py::TestBiomajDirectFTPDownload::test_ftp_list_error SKIPPED [ 31%] tests/biomaj_tests.py::TestBiomajDirectFTPDownload::test_download SKIPPED [ 32%] tests/biomaj_tests.py::TestBiomajDirectFTPSDownload::test_ftps_list SKIPPED [ 34%] tests/biomaj_tests.py::TestBiomajDirectFTPSDownload::test_download SKIPPED [ 36%] tests/biomaj_tests.py::TestBiomajDirectHTTPDownload::test_http_list SKIPPED [ 37%] tests/biomaj_tests.py::TestBiomajDirectHTTPDownload::test_http_list_error SKIPPED [ 39%] tests/biomaj_tests.py::TestBiomajDirectHTTPDownload::test_download SKIPPED [ 40%] tests/biomaj_tests.py::TestBiomajDirectHTTPDownload::test_download_get_params_save_as SKIPPED [ 42%] tests/biomaj_tests.py::TestBiomajDirectHTTPDownload::test_download_save_as SKIPPED [ 44%] tests/biomaj_tests.py::TestBiomajDirectHTTPDownload::test_download_post_params SKIPPED [ 45%] tests/biomaj_tests.py::TestBiomajDirectHTTPDownload::test_redirection SKIPPED [ 47%] tests/biomaj_tests.py::TestBiomajFTPDownload::test_ftp_list SKIPPED [ 49%] tests/biomaj_tests.py::TestBiomajFTPDownload::test_ftp_list_error SKIPPED [ 50%] tests/biomaj_tests.py::TestBiomajFTPDownload::test_download SKIPPED [ 52%] tests/biomaj_tests.py::TestBiomajFTPDownload::test_download_skip_check_uncompress SKIPPED [ 54%] tests/biomaj_tests.py::TestBiomajFTPDownload::test_download_in_subdir SKIPPED [ 55%] tests/biomaj_tests.py::TestBiomajFTPDownload::test_download_or_copy SKIPPED [ 57%] tests/biomaj_tests.py::TestBiomajFTPDownload::test_download_or_copy_directhttp SKIPPED [ 59%] tests/biomaj_tests.py::TestBiomajFTPDownload::test_get_more_recent_file SKIPPED [ 60%] tests/biomaj_tests.py::TestBiomajFTPDownload::test_download_retry SKIPPED [ 62%] tests/biomaj_tests.py::TestBiomajFTPDownload::test_ms_server SKIPPED [ 63%] tests/biomaj_tests.py::TestBiomajFTPDownload::test_download_tcp_keepalive SKIPPED [ 65%] tests/biomaj_tests.py::TestBiomajFTPDownload::test_download_ftp_method SKIPPED [ 67%] tests/biomaj_tests.py::TestBiomajFTPSDownload::test_ftps_list SKIPPED [ 68%] tests/biomaj_tests.py::TestBiomajFTPSDownload::test_ftps_list_error SKIPPED [ 70%] tests/biomaj_tests.py::TestBiomajFTPSDownload::test_download SKIPPED [ 72%] tests/biomaj_tests.py::TestBiomajFTPSDownload::test_ftps_list_no_ssl SKIPPED [ 73%] tests/biomaj_tests.py::TestBiomajFTPSDownload::test_download_no_ssl SKIPPED [ 75%] tests/biomaj_tests.py::TestBiomajFTPSDownload::test_download_ssl_certificate SKIPPED [ 77%] tests/biomaj_tests.py::TestBiomajRSYNCDownload::test_rsync_list PASSED [ 78%] tests/biomaj_tests.py::TestBiomajRSYNCDownload::test_rsync_list_error PASSED [ 80%] tests/biomaj_tests.py::TestBiomajRSYNCDownload::test_rsync_match PASSED [ 81%] tests/biomaj_tests.py::TestBiomajRSYNCDownload::test_rsync_download PASSED [ 83%] tests/biomaj_tests.py::TestBiomajRSYNCDownload::test_rsync_general_download PASSED [ 85%] tests/biomaj_tests.py::TestBiomajRSYNCDownload::test_rsync_download_or_copy PASSED [ 86%] tests/biomaj_tests.py::TestBiomajRSYNCDownload::test_rsync_download_in_subdir PASSED [ 88%] tests/biomaj_tests.py::TestBiomajRSYNCDownload::test_rsync_download_skip_check_uncompress PASSED [ 90%] tests/biomaj_tests.py::TestBiomajRSYNCDownload::test_rsync_download_retry PASSED [ 91%] tests/biomaj_tests.py::TestBiomajIRODSDownload::test_irods_list SKIPPED [ 93%] tests/biomaj_tests.py::TestBiomajLocalIRODSDownload::test_irods_download SKIPPED [ 95%] tests/biomaj_tests.py::TestBiomajLocalIRODSDownload::test_irods_download_retry SKIPPED [ 96%] tests/biomaj_tests.py::TestBiomajLocalIRODSDownload::test_irods_download_skip_check_uncompress SKIPPED [ 98%] tests/biomaj_tests.py::TestBiomajLocalIRODSDownload::test_irods_list_error SKIPPED [100%] =============================== warnings summary =============================== tests/biomaj_tests.py:453 /build/reproducible-path/biomaj3-download-3.2.12/tests/biomaj_tests.py:453: SyntaxWarning: invalid escape sequence '\s' "[\w\-\.]+.tar.gz)<\/a>[\s]+([0-9]{2}-[A-Za-z]{3}-[0-9]{4}[\s][0-9]{2}:[0-9]{2})[\s]+([0-9]+[A-Za-z])", tests/biomaj_tests.py:454 /build/reproducible-path/biomaj3-download-3.2.12/tests/biomaj_tests.py:454: SyntaxWarning: invalid escape sequence '\s' "([\w\-\.]+.tar.gz)<\/a>[\s]+([0-9]{2}-[A-Za-z]{3}-[0-9]{4}[\s][0-9]{2}:[0-9]{2})[\s]+([0-9]+[A-Za-z])", ../../../usr/lib/python3/dist-packages/biomaj_core/utils.py:11 /usr/lib/python3/dist-packages/biomaj_core/utils.py:11: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html import pkg_resources tests/biomaj_tests.py::TestBiomajRSYNCDownload::test_rsync_download tests/biomaj_tests.py::TestBiomajRSYNCDownload::test_rsync_download_in_subdir tests/biomaj_tests.py::TestBiomajRSYNCDownload::test_rsync_download_in_subdir /usr/lib/python3/dist-packages/biomaj_core/utils.py:428: DeprecationWarning: The 'warn' method is deprecated, use 'warning' instead logger.warn("archive_check: unable to process check call for '" + str(archivefile) + "'") -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ================= 15 passed, 46 skipped, 6 warnings in 27.49s ================== make[1]: Leaving directory '/build/reproducible-path/biomaj3-download-3.2.12' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_installdirs -O--buildsystem=pybuild dh_auto_install --destdir=debian/python3-biomaj3-download/ -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/biomaj3-download-3.2.12/debian/python3-biomaj3-download /usr/lib/python3/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self._enforce_underscore(opt, section) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. (Affected: biomaj_download). This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self._enforce_underscore(opt, section) /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU Affero General Public License v3 or later (AGPLv3+) See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py copying biomaj_download/message/downmessage_pb2.py -> /build/reproducible-path/biomaj3-download-3.2.12/.pybuild/cpython3_3.13_biomaj-download/build/biomaj_download/message running egg_info writing biomaj_download.egg-info/PKG-INFO writing dependency_links to biomaj_download.egg-info/dependency_links.txt writing requirements to biomaj_download.egg-info/requires.txt writing top-level names to biomaj_download.egg-info/top_level.txt reading manifest file 'biomaj_download.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.txt' under directory 'biomaj_core' adding license file 'LICENSE' writing manifest file 'biomaj_download.egg-info/SOURCES.txt' running build_scripts running install_lib creating /build/reproducible-path/biomaj3-download-3.2.12/debian/python3-biomaj3-download/usr/lib/python3.13/dist-packages creating /build/reproducible-path/biomaj3-download-3.2.12/debian/python3-biomaj3-download/usr/lib/python3.13/dist-packages/biomaj_download creating /build/reproducible-path/biomaj3-download-3.2.12/debian/python3-biomaj3-download/usr/lib/python3.13/dist-packages/biomaj_download/download copying /build/reproducible-path/biomaj3-download-3.2.12/.pybuild/cpython3_3.13_biomaj-download/build/biomaj_download/download/__init__.py -> /build/reproducible-path/biomaj3-download-3.2.12/debian/python3-biomaj3-download/usr/lib/python3.13/dist-packages/biomaj_download/download copying /build/reproducible-path/biomaj3-download-3.2.12/.pybuild/cpython3_3.13_biomaj-download/build/biomaj_download/download/curl.py -> /build/reproducible-path/biomaj3-download-3.2.12/debian/python3-biomaj3-download/usr/lib/python3.13/dist-packages/biomaj_download/download copying /build/reproducible-path/biomaj3-download-3.2.12/.pybuild/cpython3_3.13_biomaj-download/build/biomaj_download/download/direct.py -> /build/reproducible-path/biomaj3-download-3.2.12/debian/python3-biomaj3-download/usr/lib/python3.13/dist-packages/biomaj_download/download copying /build/reproducible-path/biomaj3-download-3.2.12/.pybuild/cpython3_3.13_biomaj-download/build/biomaj_download/download/downloadthreads.py -> /build/reproducible-path/biomaj3-download-3.2.12/debian/python3-biomaj3-download/usr/lib/python3.13/dist-packages/biomaj_download/download copying /build/reproducible-path/biomaj3-download-3.2.12/.pybuild/cpython3_3.13_biomaj-download/build/biomaj_download/download/interface.py -> /build/reproducible-path/biomaj3-download-3.2.12/debian/python3-biomaj3-download/usr/lib/python3.13/dist-packages/biomaj_download/download copying /build/reproducible-path/biomaj3-download-3.2.12/.pybuild/cpython3_3.13_biomaj-download/build/biomaj_download/download/localcopy.py -> /build/reproducible-path/biomaj3-download-3.2.12/debian/python3-biomaj3-download/usr/lib/python3.13/dist-packages/biomaj_download/download copying /build/reproducible-path/biomaj3-download-3.2.12/.pybuild/cpython3_3.13_biomaj-download/build/biomaj_download/download/protocolirods.py -> /build/reproducible-path/biomaj3-download-3.2.12/debian/python3-biomaj3-download/usr/lib/python3.13/dist-packages/biomaj_download/download copying /build/reproducible-path/biomaj3-download-3.2.12/.pybuild/cpython3_3.13_biomaj-download/build/biomaj_download/download/rsync.py -> /build/reproducible-path/biomaj3-download-3.2.12/debian/python3-biomaj3-download/usr/lib/python3.13/dist-packages/biomaj_download/download creating /build/reproducible-path/biomaj3-download-3.2.12/debian/python3-biomaj3-download/usr/lib/python3.13/dist-packages/biomaj_download/message copying /build/reproducible-path/biomaj3-download-3.2.12/.pybuild/cpython3_3.13_biomaj-download/build/biomaj_download/message/downmessage_pb2.py -> /build/reproducible-path/biomaj3-download-3.2.12/debian/python3-biomaj3-download/usr/lib/python3.13/dist-packages/biomaj_download/message copying /build/reproducible-path/biomaj3-download-3.2.12/.pybuild/cpython3_3.13_biomaj-download/build/biomaj_download/message/__init__.py -> /build/reproducible-path/biomaj3-download-3.2.12/debian/python3-biomaj3-download/usr/lib/python3.13/dist-packages/biomaj_download/message copying /build/reproducible-path/biomaj3-download-3.2.12/.pybuild/cpython3_3.13_biomaj-download/build/biomaj_download/__init__.py -> /build/reproducible-path/biomaj3-download-3.2.12/debian/python3-biomaj3-download/usr/lib/python3.13/dist-packages/biomaj_download copying /build/reproducible-path/biomaj3-download-3.2.12/.pybuild/cpython3_3.13_biomaj-download/build/biomaj_download/biomaj_download_web.py -> /build/reproducible-path/biomaj3-download-3.2.12/debian/python3-biomaj3-download/usr/lib/python3.13/dist-packages/biomaj_download copying /build/reproducible-path/biomaj3-download-3.2.12/.pybuild/cpython3_3.13_biomaj-download/build/biomaj_download/downloadclient.py -> /build/reproducible-path/biomaj3-download-3.2.12/debian/python3-biomaj3-download/usr/lib/python3.13/dist-packages/biomaj_download copying /build/reproducible-path/biomaj3-download-3.2.12/.pybuild/cpython3_3.13_biomaj-download/build/biomaj_download/downloadservice.py -> /build/reproducible-path/biomaj3-download-3.2.12/debian/python3-biomaj3-download/usr/lib/python3.13/dist-packages/biomaj_download copying /build/reproducible-path/biomaj3-download-3.2.12/.pybuild/cpython3_3.13_biomaj-download/build/biomaj_download/wsgi.py -> /build/reproducible-path/biomaj3-download-3.2.12/debian/python3-biomaj3-download/usr/lib/python3.13/dist-packages/biomaj_download byte-compiling /build/reproducible-path/biomaj3-download-3.2.12/debian/python3-biomaj3-download/usr/lib/python3.13/dist-packages/biomaj_download/download/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/biomaj3-download-3.2.12/debian/python3-biomaj3-download/usr/lib/python3.13/dist-packages/biomaj_download/download/curl.py to curl.cpython-313.pyc byte-compiling /build/reproducible-path/biomaj3-download-3.2.12/debian/python3-biomaj3-download/usr/lib/python3.13/dist-packages/biomaj_download/download/direct.py to direct.cpython-313.pyc byte-compiling /build/reproducible-path/biomaj3-download-3.2.12/debian/python3-biomaj3-download/usr/lib/python3.13/dist-packages/biomaj_download/download/downloadthreads.py to downloadthreads.cpython-313.pyc byte-compiling /build/reproducible-path/biomaj3-download-3.2.12/debian/python3-biomaj3-download/usr/lib/python3.13/dist-packages/biomaj_download/download/interface.py to interface.cpython-313.pyc byte-compiling /build/reproducible-path/biomaj3-download-3.2.12/debian/python3-biomaj3-download/usr/lib/python3.13/dist-packages/biomaj_download/download/localcopy.py to localcopy.cpython-313.pyc byte-compiling /build/reproducible-path/biomaj3-download-3.2.12/debian/python3-biomaj3-download/usr/lib/python3.13/dist-packages/biomaj_download/download/protocolirods.py to protocolirods.cpython-313.pyc byte-compiling /build/reproducible-path/biomaj3-download-3.2.12/debian/python3-biomaj3-download/usr/lib/python3.13/dist-packages/biomaj_download/download/rsync.py to rsync.cpython-313.pyc byte-compiling /build/reproducible-path/biomaj3-download-3.2.12/debian/python3-biomaj3-download/usr/lib/python3.13/dist-packages/biomaj_download/message/downmessage_pb2.py to downmessage_pb2.cpython-313.pyc byte-compiling /build/reproducible-path/biomaj3-download-3.2.12/debian/python3-biomaj3-download/usr/lib/python3.13/dist-packages/biomaj_download/message/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/biomaj3-download-3.2.12/debian/python3-biomaj3-download/usr/lib/python3.13/dist-packages/biomaj_download/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/biomaj3-download-3.2.12/debian/python3-biomaj3-download/usr/lib/python3.13/dist-packages/biomaj_download/biomaj_download_web.py to biomaj_download_web.cpython-313.pyc byte-compiling /build/reproducible-path/biomaj3-download-3.2.12/debian/python3-biomaj3-download/usr/lib/python3.13/dist-packages/biomaj_download/downloadclient.py to downloadclient.cpython-313.pyc byte-compiling /build/reproducible-path/biomaj3-download-3.2.12/debian/python3-biomaj3-download/usr/lib/python3.13/dist-packages/biomaj_download/downloadservice.py to downloadservice.cpython-313.pyc byte-compiling /build/reproducible-path/biomaj3-download-3.2.12/debian/python3-biomaj3-download/usr/lib/python3.13/dist-packages/biomaj_download/wsgi.py to wsgi.cpython-313.pyc running install_egg_info Copying biomaj_download.egg-info to /build/reproducible-path/biomaj3-download-3.2.12/debian/python3-biomaj3-download/usr/lib/python3.13/dist-packages/biomaj_download-3.2.12.egg-info Skipping SOURCES.txt running install_scripts copying build/scripts-3.13/biomaj_download_consumer.py -> /build/reproducible-path/biomaj3-download-3.2.12/debian/python3-biomaj3-download/usr/bin changing mode of /build/reproducible-path/biomaj3-download-3.2.12/debian/python3-biomaj3-download/usr/bin/biomaj_download_consumer.py to 755 debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/biomaj3-download-3.2.12' dh_install sed -i '1s;^;#!/usr/bin/python3\n;' debian/python3-biomaj3-download/usr/bin/biomaj_download_consumer.py make[1]: Leaving directory '/build/reproducible-path/biomaj3-download-3.2.12' dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild I: dh_python3 tools:114: replacing shebang in debian/python3-biomaj3-download/usr/bin/biomaj_download_consumer.py I: dh_python3 pydist:316: Cannot find package that provides python_consul. Please add package that provides it to Build-Depends or add "python_consul python3-consul" line to debian/py3dist-overrides or add proper dependency to Depends by hand and ignore this info. dh_installsystemduser -O--buildsystem=pybuild dh_lintian -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-biomaj3-download' in '../python3-biomaj3-download_3.2.12-2_all.deb'. dpkg-genbuildinfo --build=binary -O../biomaj3-download_3.2.12-2_arm64.buildinfo dpkg-genchanges --build=binary -O../biomaj3-download_3.2.12-2_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/985276/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/985276/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/985276 and its subdirectories I: Current time: Thu Sep 3 21:59:07 +14 2026 I: pbuilder-time-stamp: 1788422347 + false + set +x Thu Sep 3 07:59:07 UTC 2026 I: Signing ./b2/biomaj3-download_3.2.12-2_arm64.buildinfo as biomaj3-download_3.2.12-2_arm64.buildinfo.asc Thu Sep 3 07:59:07 UTC 2026 I: Signed ./b2/biomaj3-download_3.2.12-2_arm64.buildinfo as ./b2/biomaj3-download_3.2.12-2_arm64.buildinfo.asc Thu Sep 3 07:59:07 UTC 2026 - build #2 for biomaj3-download/unstable/arm64 on codethink03-arm64 done. Starting cleanup. All cleanup done. Thu Sep 3 07:59:07 UTC 2026 - reproducible_build.sh stopped running as /tmp/jenkins-script-JUMi49dS, removing. /srv/reproducible-results/rbuild-debian/r-b-build.UPWU1Oy1: total 112 drwxr-xr-x 2 jenkins jenkins 4096 Aug 1 01:33 b1 drwxr-xr-x 2 jenkins jenkins 4096 Aug 1 01:36 b2 -rw-r--r-- 1 jenkins jenkins 2541 Dec 20 2024 biomaj3-download_3.2.12-2.dsc -rw------- 1 jenkins jenkins 95766 Aug 1 01:33 rbuildlog.vnWeOhR /srv/reproducible-results/rbuild-debian/r-b-build.UPWU1Oy1/b1: total 200 -rw-r--r-- 1 jenkins jenkins 14460 Aug 1 01:33 biomaj3-download_3.2.12-2.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2541 Aug 1 01:33 biomaj3-download_3.2.12-2.dsc -rw-r--r-- 1 jenkins jenkins 7923 Aug 1 01:33 biomaj3-download_3.2.12-2_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 8805 Aug 1 01:33 biomaj3-download_3.2.12-2_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1222 Aug 1 01:33 biomaj3-download_3.2.12-2_arm64.changes -rw-r--r-- 1 jenkins jenkins 1373 Aug 1 01:33 biomaj3-download_3.2.12-2_source.changes -rw-r--r-- 1 jenkins jenkins 91745 Aug 1 01:33 build.log -rw-r--r-- 1 jenkins jenkins 49480 Aug 1 01:33 python3-biomaj3-download_3.2.12-2_all.deb /srv/reproducible-results/rbuild-debian/r-b-build.UPWU1Oy1/b2: total 192 -rw-r--r-- 1 jenkins jenkins 14460 Aug 1 01:36 biomaj3-download_3.2.12-2.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2541 Aug 1 01:36 biomaj3-download_3.2.12-2.dsc -rw-r--r-- 1 jenkins jenkins 7923 Aug 1 01:36 biomaj3-download_3.2.12-2_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 8805 Aug 1 01:36 biomaj3-download_3.2.12-2_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1222 Aug 1 01:36 biomaj3-download_3.2.12-2_arm64.changes -rw-r--r-- 1 jenkins jenkins 1373 Aug 1 01:36 biomaj3-download_3.2.12-2_source.changes -rw-r--r-- 1 jenkins jenkins 93693 Aug 1 01:36 build.log -rw-r--r-- 1 jenkins jenkins 49480 Aug 1 01:36 python3-biomaj3-download_3.2.12-2_all.deb Fri Aug 1 01:36:08 UTC 2025 I: Deleting $TMPDIR on codethink03-arm64.debian.net. Fri Aug 1 01:36:09 UTC 2025 I: biomaj3-download_3.2.12-2_arm64.changes: Format: 1.8 Date: Fri, 20 Dec 2024 21:53:22 +0100 Source: biomaj3-download Binary: python3-biomaj3-download Architecture: all Version: 3.2.12-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: python3-biomaj3-download - BioMAJ download management library Closes: 1043846 Changes: biomaj3-download (3.2.12-2) unstable; urgency=medium . * Team upload. * Fix clean target Closes: #1043846 * Standards-Version: 4.7.0 (routine-update) Checksums-Sha1: c2a4ae67ab1241d1dad6a4713d61cf2822f3c994 7923 biomaj3-download_3.2.12-2_arm64.buildinfo 167868d068fb586ff2e7ef2bf66210e21ab768e4 49480 python3-biomaj3-download_3.2.12-2_all.deb Checksums-Sha256: cc7f4886ee498c8a90b0781a3b4ca86c40f74b63974c3f7b85ba6a3d9c7c6446 7923 biomaj3-download_3.2.12-2_arm64.buildinfo 69bdcc7174c160a828c259387ce9ef476ecb172850113140a320d4ad9c09284a 49480 python3-biomaj3-download_3.2.12-2_all.deb Files: 85a3c5f95e0fd69150515278123fd540 7923 python optional biomaj3-download_3.2.12-2_arm64.buildinfo 46c9abe1c21f9c4ea881107ebf0271ce 49480 python optional python3-biomaj3-download_3.2.12-2_all.deb removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/biomaj3-download_3.2.12-2.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/biomaj3-download_3.2.12-2.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/arm64/biomaj3-download_3.2.12-2.build1.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/arm64/biomaj3-download_3.2.12-2.build2.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/buildinfo/unstable/arm64/biomaj3-download_3.2.12-2_arm64.buildinfo' removed '/var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/arm64/biomaj3-download_3.2.12-2.diff.gz' Diff of the two buildlogs: -- --- b1/build.log 2025-08-01 01:33:28.012936582 +0000 +++ b2/build.log 2025-08-01 01:36:08.745140954 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Thu Jul 31 13:32:01 -12 2025 -I: pbuilder-time-stamp: 1754011921 +I: Current time: Thu Sep 3 21:56:30 +14 2026 +I: pbuilder-time-stamp: 1788422190 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -24,52 +24,84 @@ dpkg-source: info: applying locale-sensitive.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/698221/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/985276/tmp/hooks/D01_modify_environment starting +debug: Running on codethink03-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Sep 3 07:56 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/985276/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/985276/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='d266207391c8401f95cac1a7a099b05d' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='698221' - PS1='# ' - PS2='> ' + INVOCATION_ID=8639e8ca3c1a478eb7c3a930500b3814 + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=985276 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.UPWU1Oy1/pbuilderrc_QmPH --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.UPWU1Oy1/b1 --logfile b1/build.log biomaj3-download_3.2.12-2.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.UPWU1Oy1/pbuilderrc_PTsu --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.UPWU1Oy1/b2 --logfile b2/build.log biomaj3-download_3.2.12-2.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink04-arm64 6.1.0-37-cloud-arm64 #1 SMP Debian 6.1.140-1 (2025-05-22) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-37-cloud-arm64 #1 SMP Debian 6.1.140-1 (2025-05-22) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 May 12 19:25 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/698221/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 May 12 2025 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/985276/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -281,7 +313,7 @@ Get: 126 http://deb.debian.org/debian unstable/main arm64 python3-simpleeval all 1.0.3-1 [24.0 kB] Get: 127 http://deb.debian.org/debian unstable/main arm64 python3-tenacity all 8.4.2+really8.4.1-2 [46.0 kB] Get: 128 http://deb.debian.org/debian unstable/main arm64 python3-yaml arm64 6.0.2-1+b2 [122 kB] -Fetched 30.3 MB in 0s (105 MB/s) +Fetched 30.3 MB in 0s (94.6 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19964 files and directories currently installed.) @@ -700,8 +732,8 @@ Setting up tzdata (2025b-4) ... Current default time zone: 'Etc/UTC' -Local time is now: Fri Aug 1 01:32:20 UTC 2025. -Universal Time is now: Fri Aug 1 01:32:20 UTC 2025. +Local time is now: Thu Sep 3 07:57:15 UTC 2026. +Universal Time is now: Thu Sep 3 07:57:15 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20240727.1) ... @@ -855,7 +887,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/biomaj3-download-3.2.12/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../biomaj3-download_3.2.12-2_source.changes +I: user script /srv/workspace/pbuilder/985276/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/985276/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/biomaj3-download-3.2.12/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../biomaj3-download_3.2.12-2_source.changes dpkg-buildpackage: info: source package biomaj3-download dpkg-buildpackage: info: source version 3.2.12-2 dpkg-buildpackage: info: source distribution unstable @@ -873,8 +909,8 @@ Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. - By 2026-Mar-03, you need to update your project and remove deprecated calls - or your builds will no longer be supported. + This deprecation is overdue, please update your project and remove deprecated + calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** @@ -891,8 +927,8 @@ versions. Please use the underscore name 'description_file' instead. (Affected: biomaj_download). - By 2026-Mar-03, you need to update your project and remove deprecated calls - or your builds will no longer be supported. + This deprecation is overdue, please update your project and remove deprecated + calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** @@ -939,8 +975,8 @@ Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. - By 2026-Mar-03, you need to update your project and remove deprecated calls - or your builds will no longer be supported. + This deprecation is overdue, please update your project and remove deprecated + calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** @@ -957,8 +993,8 @@ versions. Please use the underscore name 'description_file' instead. (Affected: biomaj_download). - By 2026-Mar-03, you need to update your project and remove deprecated calls - or your builds will no longer be supported. + This deprecation is overdue, please update your project and remove deprecated + calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** @@ -992,8 +1028,8 @@ Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. - By 2026-Mar-03, you need to update your project and remove deprecated calls - or your builds will no longer be supported. + This deprecation is overdue, please update your project and remove deprecated + calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** @@ -1010,8 +1046,8 @@ versions. Please use the underscore name 'description_file' instead. (Affected: biomaj_download). - By 2026-Mar-03, you need to update your project and remove deprecated calls - or your builds will no longer be supported. + This deprecation is overdue, please update your project and remove deprecated + calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** @@ -1160,7 +1196,7 @@ logger.warn("archive_check: unable to process check call for '" + str(archivefile) + "'") -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html -================= 15 passed, 46 skipped, 6 warnings in 27.31s ================== +================= 15 passed, 46 skipped, 6 warnings in 27.49s ================== make[1]: Leaving directory '/build/reproducible-path/biomaj3-download-3.2.12' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild @@ -1175,8 +1211,8 @@ Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. - By 2026-Mar-03, you need to update your project and remove deprecated calls - or your builds will no longer be supported. + This deprecation is overdue, please update your project and remove deprecated + calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** @@ -1193,8 +1229,8 @@ versions. Please use the underscore name 'description_file' instead. (Affected: biomaj_download). - By 2026-Mar-03, you need to update your project and remove deprecated calls - or your builds will no longer be supported. + This deprecation is overdue, please update your project and remove deprecated + calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** @@ -1313,12 +1349,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/985276/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/985276/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/698221 and its subdirectories -I: Current time: Thu Jul 31 13:33:26 -12 2025 -I: pbuilder-time-stamp: 1754012006 +I: removing directory /srv/workspace/pbuilder/985276 and its subdirectories +I: Current time: Thu Sep 3 21:59:07 +14 2026 +I: pbuilder-time-stamp: 1788422347 Compressing the 2nd log... /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/arm64/biomaj3-download_3.2.12-2.diff: 74.7% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/arm64/biomaj3-download_3.2.12-2.diff.gz b2/build.log: 84.2% -- replaced with stdout Compressing the 1st log... b1/build.log: 84.6% -- replaced with stdout Fri Aug 1 01:36:10 UTC 2025 I: diffoscope 302 will be used to compare the two builds: ++ date -u +%s + DIFFOSCOPE_STAMP=/var/log/reproducible-builds/diffoscope_stamp_biomaj3-download_unstable_arm64_1754012170 + touch /var/log/reproducible-builds/diffoscope_stamp_biomaj3-download_unstable_arm64_1754012170 + RESULT=0 + systemd-run '--description=diffoscope on biomaj3-download/3.2.12-2 in unstable/arm64' --slice=rb-build-diffoscope.slice -u rb-diffoscope-arm64_11-115273 '--property=SuccessExitStatus=1 124' --user --send-sighup --pipe --wait -E TMPDIR timeout 155m nice schroot --directory /srv/reproducible-results/rbuild-debian/r-b-build.UPWU1Oy1 --run-session -c jenkins-reproducible-unstable-diffoscope-211a7b2b-a627-467c-8c18-0b8bc1908521 -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian/r-b-build.UPWU1Oy1/dbd-tmp-KSnkyiK ; timeout 150m diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.UPWU1Oy1/biomaj3-download_3.2.12-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.UPWU1Oy1/biomaj3-download_3.2.12-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.UPWU1Oy1/biomaj3-download_3.2.12-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.UPWU1Oy1/b1/biomaj3-download_3.2.12-2_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.UPWU1Oy1/b2/biomaj3-download_3.2.12-2_arm64.changes' + false + set +x Running as unit: rb-diffoscope-arm64_11-115273.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.UPWU1Oy1/biomaj3-download_3.2.12-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.UPWU1Oy1/biomaj3-download_3.2.12-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.UPWU1Oy1/biomaj3-download_3.2.12-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.UPWU1Oy1/b1/biomaj3-download_3.2.12-2_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.UPWU1Oy1/b2/biomaj3-download_3.2.12-2_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 160ms CPU time consumed: 162ms _ _ _ _____ _ _ | |__ (_) ___ _ __ ___ __ _ (_)___ / __| | _____ ___ __ | | | '_ \| |/ _ \| '_ ` _ \ / _` || | |_ \ _____ / _` |/ _ \ \ /\ / / '_ \| | | |_) | | (_) | | | | | | (_| || |___) |_____| (_| | (_) \ V V /| | | | | |_.__/|_|\___/|_| |_| |_|\__,_|/ |____/ \__,_|\___/ \_/\_/ |_| |_|_| |__/ _ ___ __ _ __| | / _ \ / _` |/ _` | | (_) | (_| | (_| | \___/ \__,_|\__,_| Fri Aug 1 01:36:10 UTC 2025 I: diffoscope 302 found no differences in the changes files, and a .buildinfo file also exists. Fri Aug 1 01:36:10 UTC 2025 I: biomaj3-download from unstable built successfully and reproducibly on arm64. INSERT 0 1 INSERT 0 1 DELETE 1 [2025-08-01 01:36:11] INFO: Starting at 2025-08-01 01:36:11.070399 [2025-08-01 01:36:11] INFO: Generating the pages of 1 package(s) [2025-08-01 01:36:11] CRITICAL: https://tests.reproducible-builds.org/debian/unstable/arm64/biomaj3-download didn't produce a buildlog, even though it has been built. [2025-08-01 01:36:11] INFO: Finished at 2025-08-01 01:36:11.296778, took: 0:00:00.226383 Fri Aug 1 01:36:11 UTC 2025 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/unstable/arm64/biomaj3-download.html Fri Aug 1 01:36:11 UTC 2025 I: Removing signed biomaj3-download_3.2.12-2_arm64.buildinfo.asc files: removed './b1/biomaj3-download_3.2.12-2_arm64.buildinfo.asc' removed './b2/biomaj3-download_3.2.12-2_arm64.buildinfo.asc' 1754012171 arm64 unstable biomaj3-download Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/biomaj3-download_3.2.12-2.rbuild.log: 82.8% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/biomaj3-download_3.2.12-2.rbuild.log.gz [2025-08-01 01:36:11] INFO: Starting at 2025-08-01 01:36:11.590857 [2025-08-01 01:36:11] INFO: Generating the pages of 1 package(s) [2025-08-01 01:36:11] INFO: Finished at 2025-08-01 01:36:11.815668, took: 0:00:00.224817 All cleanup done. Fri Aug 1 01:36:11 UTC 2025 - total duration: 0h 4m 24s. Fri Aug 1 01:36:11 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-qabplovW, removing. Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 4min 25.738s CPU time consumed: 4.512s